| name: biomni_e1 |
| channels: |
| - bioconda |
| - conda-forge |
| - defaults |
| dependencies: |
| - altair=5.5.0 |
| - asttokens=3.0.0 |
| - attrs=25.3.0 |
| - aws-c-auth=0.9.0 |
| - aws-c-cal=0.9.2 |
| - aws-c-common=0.12.4 |
| - aws-c-compression=0.3.1 |
| - aws-c-event-stream=0.5.5 |
| - aws-c-http=0.10.4 |
| - aws-c-io=0.21.2 |
| - aws-c-mqtt=0.13.3 |
| - aws-c-s3=0.8.6 |
| - aws-c-sdkutils=0.2.4 |
| - aws-checksums=0.2.7 |
| - aws-crt-cpp=0.33.1 |
| - aws-sdk-cpp=1.11.606 |
| - azure-core-cpp=1.16.0 |
| - azure-identity-cpp=1.12.0 |
| - azure-storage-blobs-cpp=12.14.0 |
| - azure-storage-common-cpp=12.10.0 |
| - azure-storage-files-datalake-cpp=12.12.0 |
| - bedtools=2.31.1 |
| - biopython=1.85 |
| - blast=2.16.0 |
| - blinker=1.9.0 |
| - bokeh=3.7.3 |
| - bowtie2=2.5.4 |
| - brotli-bin=1.1.0 |
| - brotli-python=1.1.0 |
| - bwa=0.7.19 |
| - bzip2=1.0.8 |
| - c-ares=1.34.5 |
| - ca-certificates=2025.8.3 |
| - cairo=1.18.4 |
| - certifi=2025.8.3 |
| - cffi=1.17.1 |
| - charset-normalizer=3.4.2 |
| - contourpy=1.3.3 |
| - curl=8.14.1 |
| - cycler=0.12.1 |
| - decorator=5.2.1 |
| - diamond=2.1.13 |
| - entrez-direct=22.4 |
| - exceptiongroup=1.3.0 |
| - executing=2.2.0 |
| - fastqc=0.12.1 |
| - font-ttf-dejavu-sans-mono=2.37 |
| - font-ttf-inconsolata=3.000 |
| - font-ttf-source-code-pro=2.038 |
| - font-ttf-ubuntu=0.83 |
| - fontconfig=2.15.0 |
| - fonts-conda-ecosystem=1 |
| - fonts-conda-forge=1 |
| - fonttools=4.59.0 |
| - freetype=2.13.3 |
| - gflags=2.2.2 |
| - giflib=5.2.2 |
| - gitdb=4.0.12 |
| - gitpython=3.1.45 |
| - glog=0.7.1 |
| - gmp=6.3.0 |
| - graphite2=1.3.14 |
| - gseapy=1.1.9 |
| - h2=4.2.0 |
| - harfbuzz=11.3.3 |
| - hpack=4.1.0 |
| - htslib=1.22.1 |
| - hyperframe=6.1.0 |
| - icu=75.1 |
| - idna=3.10 |
| - importlib-metadata=8.7.0 |
| - infernal=1.1.5 |
| - ipython=9.4.0 |
| - ipython_pygments_lexers=1.1.1 |
| - jedi=0.19.2 |
| - jinja2=3.1.6 |
| - jsonschema=4.25.0 |
| - jsonschema-specifications=2025.4.1 |
| - kiwisolver=1.4.8 |
| - krb5=1.21.3 |
| - lcms2=2.17 |
| - lerc=4.0.0 |
| - libabseil=20250512.1 |
| - libarrow=21.0.0 |
| - libarrow-acero=21.0.0 |
| - libarrow-compute=21.0.0 |
| - libarrow-dataset=21.0.0 |
| - libarrow-substrait=21.0.0 |
| - libasprintf=0.25.1 |
| - libblas=3.9.0 |
| - libbrotlicommon=1.1.0 |
| - libbrotlidec=1.1.0 |
| - libbrotlienc=1.1.0 |
| - libcblas=3.9.0 |
| - libcrc32c=1.1.2 |
| - libcurl=8.14.1 |
| - libdeflate=1.22 |
| - libedit=3.1.20250104 |
| - libev=4.33 |
| - libevent=2.1.12 |
| - libexpat=2.7.1 |
| - libffi=3.4.6 |
| - libfreetype=2.13.3 |
| - libfreetype6=2.13.3 |
| - libgettextpo=0.25.1 |
| - libgfortran=15.1.0 |
| - libgfortran5=15.1.0 |
| - libglib=2.84.2 |
| - libgoogle-cloud=2.39.0 |
| - libgoogle-cloud-storage=2.39.0 |
| - libgrpc=1.73.1 |
| - libiconv=1.18 |
| - libidn2=2.3.8 |
| - libjpeg-turbo=3.1.0 |
| - liblapack=3.9.0 |
| - liblzma=5.8.1 |
| - libnghttp2=1.64.0 |
| - libopenblas=0.3.30 |
| - libopentelemetry-cpp=1.21.0 |
| - libopentelemetry-cpp-headers=1.21.0 |
| - libparquet=21.0.0 |
| - libpng=1.6.50 |
| - libprotobuf=6.31.1 |
| - libre2-11=2025.07.22 |
| - libsqlite=3.50.4 |
| - libssh2=1.11.1 |
| - libthrift=0.22.0 |
| - libtiff=4.7.0 |
| - libunistring=0.9.10 |
| - libutf8proc=2.10.0 |
| - libwebp-base=1.6.0 |
| - libxml2=2.13.8 |
| - libzlib=1.3.1 |
| - lz4-c=1.10.0 |
| - mafft=7.526 |
| |
| - markupsafe=3.0.2 |
| - matplotlib-base=3.10.5 |
| - matplotlib-inline=0.1.7 |
| - mpfr=4.2.1 |
| - munkres=1.1.4 |
| - narwhals=2.0.1 |
| - ncbi-vdb=3.2.1 |
| - ncurses=6.5 |
| - nlohmann_json=3.12.0 |
| - openjdk=23.0.2 |
| - openjpeg=2.5.3 |
| - openssl=3.5.1 |
| - orc=2.1.3 |
| - packaging=25.0 |
| - pandas=2.3.1 |
| - parso=0.8.4 |
| - pcre2=10.45 |
| - perl=5.32.1 |
| - perl-archive-tar=3.04 |
| - perl-carp=1.50 |
| - perl-common-sense=3.75 |
| - perl-compress-raw-bzip2=2.201 |
| - perl-compress-raw-zlib=2.202 |
| - perl-encode=3.21 |
| - perl-exporter=5.74 |
| - perl-exporter-tiny=1.002002 |
| - perl-extutils-makemaker=7.70 |
| - perl-io-compress=2.201 |
| - perl-io-zlib=1.15 |
| - perl-json=4.10 |
| - perl-json-xs=4.03 |
| - perl-list-moreutils=0.430 |
| - perl-list-moreutils-xs=0.430 |
| - perl-parent=0.243 |
| - perl-pathtools=3.75 |
| - perl-scalar-list-utils=1.70 |
| - perl-storable=3.15 |
| - perl-types-serialiser=1.01 |
| - pexpect=4.9.0 |
| - pickleshare=0.7.5 |
| - pillow=11.3.0 |
| - pip=25.2 |
| - pixman=0.46.4 |
| |
| - prometheus-cpp=1.3.0 |
| - prompt-toolkit=3.0.51 |
| - protobuf=6.31.1 |
| - ptyprocess=0.7.0 |
| - pure_eval=0.2.3 |
| - pyarrow=21.0.0 |
| - pyarrow-core=21.0.0 |
| - pycparser=2.22 |
| - pydeck=0.9.1 |
| - pygments=2.19.2 |
| - pyopengl=3.1.9 |
| - pyparsing=3.2.3 |
| - pysocks=1.7.1 |
| - python=3.11.13 |
| - python-dateutil=2.9.0.post0 |
| - python-tzdata=2025.2 |
| - python_abi=3.11 |
| - pytz=2025.2 |
| - pyyaml=6.0.2 |
| - qhull=2020.2 |
| - re2=2025.07.22 |
| - readline=8.2 |
| - referencing=0.36.2 |
| - requests=2.32.4 |
| - ripgrep=14.1.1 |
| - rpds-py=0.26.0 |
| - rpsbproc=0.5.0 |
| - s2n=1.5.23 |
| - samtools=1.22.1 |
| - setuptools=80.9.0 |
| - six=1.17.0 |
| - smmap=5.0.2 |
| - snappy=1.2.2 |
| - stack_data=0.6.3 |
| - streamlit=1.47.1 |
| - tabulate=0.9.0 |
| - tenacity=9.1.2 |
| - tk=8.6.13 |
| - toml=0.10.2 |
| - tornado=6.5.1 |
| - traitlets=5.14.3 |
| - trimmomatic=0.39 |
| - trnascan-se=2.0.12 |
| - typing-extensions=4.14.1 |
| - typing_extensions=4.14.1 |
| - tzdata=2025b |
| - unicodedata2=16.0.0 |
| - urllib3=2.5.0 |
| - watchdog=6.0.0 |
| - wcwidth=0.2.13 |
| - wget=1.21.4 |
| - wheel=0.45.1 |
| - xyzservices=2025.4.0 |
| - yaml=0.2.5 |
| - zipp=3.23.0 |
| - zlib=1.3.1 |
| - zstd=1.5.7 |
| - pip: |
| - absl-py==2.3.1 |
| - adjusttext==1.3.0 |
| - aiobotocore |
| - aiofiles==24.1.0 |
| - aiohappyeyeballs==2.6.1 |
| - aiohttp==3.12.15 |
| - aioitertools==0.12.0 |
| - aiosignal==1.4.0 |
| - airr==1.5.1 |
| - alabaster==1.0.0 |
| - anndata==0.12.1 |
| - annotated-types==0.7.0 |
| - annoy==1.17.3 |
| - anthropic==0.60.0 |
| - anyio==4.9.0 |
| - appdirs==1.4.4 |
| - arboreto==0.1.6 |
| - argon2-cffi==25.1.0 |
| - argon2-cffi-bindings==25.1.0 |
| - array-api-compat==1.12.0 |
| - arrow==1.3.0 |
| - arviz==0.22.0 |
| - arxiv==2.2.0 |
| - asciitree==0.3.3 |
| - async-lru==2.0.5 |
| - authlib==1.6.1 |
| - autograd==1.8.0 |
| - autograd-gamma==0.5.0 |
| - awkward==2.8.6 |
| - awkward-cpp==48 |
| - babel==2.17.0 |
| - beautifulsoup4==4.13.4 |
| - bibtexparser==1.4.3 |
| - biom-format==2.1.16 |
| |
| - biopandas==0.5.1 |
| - biotite==1.4.0 |
| - biotraj==1.2.2 |
| - bleach==6.2.0 |
| - blitzgsea==1.3.54 |
| - blosc2==3.6.1 |
| - boltons==25.0.0 |
| - boto3 |
| - botocore |
| - brotli==1.1.0 |
| - cachetools==5.5.2 |
| - cellpose==4.0.6 |
| - cellxgene-census==1.17.0 |
| - cftime==1.6.4.post1 |
| - chex==0.1.90 |
| - click==8.2.1 |
| - clikit==0.6.2 |
| - cloudpickle==3.1.1 |
| - cobra==0.29.1 |
| - colorcet==3.1.0 |
| - coloredlogs==15.0.1 |
| - comm==0.2.3 |
| - community==1.0.0b1 |
| - cooler==0.10.4 |
| - crashtest==0.3.1 |
| - cryosparc-tools==4.7.1 |
| - cryptography==45.0.5 |
| - ctxcore==0.2.0 |
| - cyclopts==3.22.5 |
| - cython==0.29.37 |
| - cytoolz==1.0.1 |
| - cyvcf2==0.31.1 |
| - dask==2024.11.2 |
| - dask-expr==1.1.19 |
| - dask-image==2024.5.3 |
| - dataclasses==0.6 |
| - dataclasses-json==0.6.7 |
| - datashader==0.18.1 |
| - debugpy==1.8.15 |
| - decoupler==2.1.1 |
| - defusedxml==0.7.1 |
| - demes==0.2.3 |
| - depinfo==2.2.0 |
| - deprecated==1.2.18 |
| - deprecation==2.1.0 |
| - dill==0.4.0 |
| - diskcache==5.6.3 |
| - distributed==2024.11.2 |
| - distro==1.9.0 |
| - dnspython==2.7.0 |
| - docrep==0.3.2 |
| - docstring-parser==0.17.0 |
| - docutils==0.21.2 |
| - domdf-python-tools==3.10.0 |
| - drmaa==0.7.9 |
| - email-validator==2.2.0 |
| - enum-tools==0.13.0 |
| - equinox==0.13.0 |
| - et-xmlfile==2.0.0 |
| - etils==1.13.0 |
| - faiss-cpu==1.11.0.post1 |
| - fake-useragent==2.2.0 |
| - fanc==0.9.28 |
| - fast-array-utils==1.2.1 |
| - fastapi==0.116.1 |
| - fasteners==0.19 |
| - fastjsonschema==2.21.1 |
| - fastmcp==2.11.0 |
| - fastprogress==1.0.3 |
| - fastremap==1.17.2 |
| - fcsparser==0.2.4 |
| - feedparser==6.0.11 |
| - ffmpy==0.6.1 |
| - filelock==3.18.0 |
| - filetype==1.2.0 |
| - fill-voids==2.1.0 |
| - flask==3.1.1 |
| - flax==0.11.0 |
| - flowcytometrytools==0.5.1 |
| - formulaic==1.2.0 |
| - formulaic-contrasts==1.0.0 |
| - fqdn==1.5.1 |
| - free-proxy==1.1.3 |
| - frozendict==2.4.6 |
| - frozenlist==1.7.0 |
| - fsspec==2025.7.0 |
| - future==1.0.0 |
| - fuzzywuzzy==0.18.0 |
| - genomic-regions==0.0.10 |
| - geopandas==1.1.1 |
| - gget==0.29.2 |
| - google-ai-generativelanguage==0.6.18 |
| - google-api-core==2.25.1 |
| - google-auth==2.40.3 |
| - googleapis-common-protos==1.70.0 |
| - googlesearch-python==1.3.0 |
| - gradio==5.39.0 |
| - gradio-client==1.11.0 |
| - graphql-core==3.2.6 |
| - greenlet==3.2.3 |
| - gridmap==0.15.0 |
| - groovy==0.1.2 |
| - grpcio==1.74.0 |
| - grpcio-status==1.74.0 |
| - h11==0.16.0 |
| - h5netcdf==1.6.3 |
| - h5py==3.14.0 |
| - harmony-pytorch==0.1.8 |
| - hf-xet==1.1.5 |
| - hmmlearn==0.3.3 |
| - httpcore==1.0.9 |
| |
| - httpx==0.28.1 |
| - httpx-sse==0.4.1 |
| - huggingface-hub==0.34.3 |
| - humanfriendly==10.0 |
| - humanize==4.12.3 |
| - igraph==0.11.9 |
| - imagecodecs==2025.8.2 |
| - imageio==2.37.0 |
| - imagesize==1.4.1 |
| - importlib-resources==6.5.2 |
| - inflect==7.5.0 |
| - iniconfig==2.1.0 |
| - interface-meta==1.3.0 |
| - interlap==0.2.7 |
| - intervaltree==3.1.0 |
| - ipykernel==6.30.0 |
| - ipywidgets==8.1.7 |
| - isodate==0.7.2 |
| - isoduration==20.11.0 |
| - itsdangerous==2.2.0 |
| - jax==0.6.2 |
| - jaxlib==0.6.2 |
| - jaxopt==0.8.5 |
| - jaxtyping==0.3.2 |
| - jiter==0.10.0 |
| - jmespath==1.0.1 |
| - joblib==1.5.1 |
| - json5==0.12.0 |
| - jsonpatch==1.33 |
| - jsonpointer==3.0.0 |
| - jsonschema-path==0.3.4 |
| - jupyter==1.1.1 |
| - jupyter-client==8.6.3 |
| - jupyter-console==6.6.3 |
| - jupyter-core==5.8.1 |
| - jupyter-events==0.12.0 |
| - jupyter-lsp==2.2.6 |
| - jupyter-server==2.16.0 |
| - jupyter-server-terminals==0.5.3 |
| - jupyterlab==4.4.5 |
| - jupyterlab-pygments==0.3.0 |
| - jupyterlab-server==2.27.3 |
| - jupyterlab-widgets==3.0.15 |
| - lamin-utils==0.15.0 |
| - langchain==0.3.27 |
| - langchain-anthropic==0.3.18 |
| - langchain-community==0.3.27 |
| - langchain-core==0.3.72 |
| |
| - langchain-ollama==0.3.6 |
| - langchain-openai==0.3.28 |
| - langchain-text-splitters==0.3.9 |
| - langgraph==0.3.18 |
| - langgraph-checkpoint==2.1.1 |
| - langgraph-prebuilt==0.1.8 |
| - langgraph-sdk==0.1.74 |
| - langsmith==0.4.10 |
| - lark==1.2.2 |
| - lazy-loader==0.4 |
| - lazy-object-proxy==1.11.0 |
| - legacy-api-wrap==1.4.1 |
| - legendkit==0.3.6 |
| - levenshtein==0.27.1 |
| - lifelines==0.30.0 |
| - lightning==2.5.2 |
| - lightning-utilities==0.15.0 |
| - lineax==0.0.8 |
| - llvmlite==0.44.0 |
| - locket==1.0.0 |
| - logomaker==0.8.7 |
| - loompy==3.0.8 |
| - looseversion==1.1.2 |
| - lxml==6.0.0 |
| - lz4==4.4.4 |
| - macs2==2.2.9.1 |
| - markdown==3.8.2 |
| - markdown-it-py==3.0.0 |
| - marshmallow==3.26.1 |
| - marsilea==0.5.4 |
| - matplotlib-scalebar==0.9.0 |
| - mcp==1.12.3 |
| - mdurl==0.1.2 |
| - mistune==3.1.3 |
| - ml-collections==1.1.0 |
| - ml-dtypes==0.5.3 |
| - mmtf-python==1.1.3 |
| - more-itertools==10.7.0 |
| - mpmath==1.3.0 |
| - msgpack==1.1.1 |
| - msgpack-numpy==0.4.8 |
| - msprime==1.3.4 |
| - mudata==0.3.2 |
| - multidict==6.6.3 |
| - multipledispatch==1.0.0 |
| - multiprocess==0.70.18 |
| - multiprocessing-on-dill==3.5.0a4 |
| - multiscale-spatial-image==2.0.2 |
| - muon==0.1.7 |
| - mypy-extensions==1.1.0 |
| - mysql-connector-python==9.4.0 |
| - natsort==8.4.0 |
| - nbclient==0.10.2 |
| - nbconvert==7.16.6 |
| - nbformat==5.10.4 |
| - ncls==0.0.70 |
| - ndindex==1.10.0 |
| - nest-asyncio==1.6.0 |
| - netcdf4==1.7.2 |
| - networkx==3.5 |
| - newick==1.10.0 |
| - notebook==7.4.4 |
| - notebook-shim==0.2.4 |
| - numba==0.61.2 |
| - numcodecs==0.15.1 |
| - numexpr==2.11.0 |
| - numpy==2.1.0 |
| - numpy-groupies==0.11.3 |
| - numpyro==0.18.0 |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| - ollama==0.5.1 |
| - ome-zarr==0.11.1 |
| - omnipath==1.0.12 |
| - openai==1.98.0 |
| - openapi-core==0.19.5 |
| - openapi-pydantic==0.5.1 |
| - openapi-schema-validator==0.6.3 |
| - openapi-spec-validator==0.7.2 |
| - opencv-python==4.12.0.88 |
| - opencv-python-headless==4.12.0.88 |
| - openmm==8.3.1 |
| - openpyxl==3.1.5 |
| - opt-einsum==3.4.0 |
| - optax==0.2.5 |
| - optlang==1.8.3 |
| - orbax-checkpoint==0.11.20 |
| - orjson==3.11.1 |
| - ormsgpack==1.10.0 |
| - ott-jax==0.5.1 |
| - outcome==1.3.0.post0 |
| - overrides==7.7.0 |
| - pandocfilters==1.5.1 |
| - param==2.2.1 |
| - parse==1.20.2 |
| - partd==1.4.2 |
| - pastel==0.2.1 |
| - pathable==0.4.4 |
| - patsy==1.0.1 |
| - pertpy==1.0.1 |
| - pims==0.7 |
| - platformdirs==4.3.8 |
| - pluggy==1.6.0 |
| - ply==3.11 |
| - pooch==1.8.2 |
| - progressbar2==4.5.0 |
| - prometheus-client==0.22.1 |
| - propcache==0.3.2 |
| - proto-plus==1.26.1 |
| - psutil==7.0.0 |
| - pubchempy==1.0.4 |
| - py-cpuinfo==9.0.0 |
| - pyarrow-hotfix==0.7 |
| - pyasn1==0.6.1 |
| - pyasn1-modules==0.4.2 |
| - pybedtools==0.12.0 |
| - pybigwig==0.3.24 |
| - pyct==0.5.0 |
| - pydantic==2.11.7 |
| - pydantic-core==2.33.2 |
| - pydantic-settings==2.10.1 |
| - pydeseq2==0.5.2 |
| - pydub==0.25.1 |
| - pyfaidx==0.8.1.4 |
| - pykalman==0.10.1 |
| - pylev==1.4.0 |
| - pyliftover==0.4.1 |
| - pymassspec==2.6.0.post1 |
| - pymc3==3.11.4 |
| - pymed==0.8.9 |
| - pymzml==2.5.11 |
| - pynndescent==0.5.13 |
| - pyogrio==0.11.1 |
| - pyomo==6.9.2 |
| - pypdf2==3.0.1 |
| - pyperclip==1.9.0 |
| - pyproj==3.7.1 |
| - pyranges==0.1.4 |
| - pyro-api==0.1.2 |
| - pyro-ppl==1.9.1 |
| - pysam==0.23.3 |
| - pyscenic==0.12.1 |
| - pysimdjson==6.0.2 |
| |
| - pytdc==0.4.0 |
| - pytest==8.4.1 |
| - python-dotenv==1.1.1 |
| - python-json-logger==3.3.0 |
| - python-levenshtein==0.27.1 |
| - python-libsbml==5.20.5 |
| - python-multipart==0.0.20 |
| - python-utils==3.9.1 |
| - pytorch-lightning==2.5.2 |
| - pyzmq==27.0.1 |
| - rapidfuzz==3.13.0 |
| - rdkit==2025.3.5 |
| - rdkit-pypi==2022.9.5 |
| - regex==2025.7.34 |
| - reportlab==4.4.3 |
| - requests-toolbelt==1.0.0 |
| - rfc3339-validator==0.1.4 |
| - rfc3986-validator==0.1.1 |
| - rfc3987-syntax==1.1.0 |
| - rich==14.1.0 |
| - rich-rst==1.3.1 |
| - roifile==2025.5.10 |
| - roman-numerals-py==3.1.0 |
| - rsa==4.9.1 |
| - ruamel-yaml==0.18.14 |
| - ruamel-yaml-clib==0.2.12 |
| - ruff==0.12.7 |
| - s3fs==2025.7.0 |
| - s3transfer==0.13.1 |
| - safehttpx==0.1.6 |
| - safetensors==0.5.3 |
| - scanpy==1.11.4 |
| - scholarly==1.7.11 |
| - scikit-base==0.12.4 |
| - scikit-bio==0.7.0 |
| - scikit-image==0.25.2 |
| - scikit-learn==1.7.1 |
| - scikit-misc==0.5.1 |
| - scipy==1.15.0 |
| - scirpy==0.22.1 |
| - scrublet==0.2.3 |
| - scvelo==0.3.3 |
| - scvi-tools==1.3.3 |
| - sdjson==0.5.0 |
| - seaborn==0.13.2 |
| - segment-anything==1.0 |
| - selenium==4.34.2 |
| - semantic-version==2.10.0 |
| - semver==3.0.4 |
| - send2trash==1.8.3 |
| - sentencepiece==0.2.0 |
| - session-info==1.0.1 |
| - session-info2==0.2 |
| - sgmllib3k==1.0.0 |
| - shapely==2.1.1 |
| - shellingham==1.5.4 |
| - simplejson==3.20.1 |
| - slicerator==1.1.0 |
| - sniffio==1.3.1 |
| - snowballstemmer==3.0.1 |
| - somacore==1.0.28 |
| - sorted-nearest==0.0.39 |
| - sortedcontainers==2.4.0 |
| - soupsieve==2.7 |
| - sparse==0.17.0 |
| - sparsecca==0.3.1 |
| - spatial-image==1.2.2 |
| - spatialdata==0.4.0 |
| - sphinx==8.2.3 |
| - sphinx-rtd-theme==3.0.2 |
| - sphinxcontrib-applehelp==2.0.0 |
| - sphinxcontrib-devhelp==2.0.0 |
| - sphinxcontrib-htmlhelp==2.1.0 |
| - sphinxcontrib-jquery==4.1 |
| - sphinxcontrib-jsmath==1.0.1 |
| - sphinxcontrib-qthelp==2.0.0 |
| - sphinxcontrib-serializinghtml==2.0.0 |
| - sqlalchemy==2.0.42 |
| - squarify==0.4.4 |
| - squidpy==1.6.5 |
| - sse-starlette==3.0.2 |
| - starlette==0.47.2 |
| - statsmodels==0.14.5 |
| - stdlib-list==0.11.1 |
| - swiglpk==5.0.12 |
| - sympy==1.14.0 |
| - tables==3.10.2 |
| - tblib==3.1.0 |
| - tensorboard==2.20.0 |
| - tensorboard-data-server==0.7.2 |
| - tensorstore==0.1.76 |
| - terminado==0.18.1 |
| - texttable==1.7.0 |
| - theano-pymc==1.1.2 |
| - threadpoolctl==3.6.0 |
| - tifffile==2025.6.11 |
| - tiktoken==0.9.0 |
| - tiledbsoma==1.17.1 |
| - tinycss2==1.4.0 |
| - tokenizers==0.21.4 |
| - tomlkit==0.13.3 |
| - tooluniverse==0.2.0 |
| - toolz==1.0.0 |
| - torch==2.7.1 |
| - torchmetrics==1.8.0 |
| - torchvision==0.22.1 |
| - tqdm==4.67.1 |
| - trackpy==0.7 |
| - transformers==4.54.1 |
| - treescope==0.1.9 |
| - trio==0.30.0 |
| - trio-websocket==0.12.2 |
| |
| - tskit==0.6.4 |
| - typeguard==4.4.4 |
| - typer==0.16.0 |
| - types-python-dateutil==2.9.0.20250708 |
| - typing-inspect==0.9.0 |
| - typing-inspection==0.4.1 |
| - umap-learn==0.5.9.post2 |
| - uri-template==1.3.0 |
| - uvicorn==0.35.0 |
| - validators==0.35.0 |
| - viennarna==2.7.0 |
| - wadler-lindig==0.1.7 |
| - webargs==8.7.0 |
| - webcolors==24.11.1 |
| - webencodings==0.5.1 |
| - websocket-client==1.8.0 |
| - websockets==15.0.1 |
| - werkzeug==3.1.1 |
| - widgetsnbextension==4.0.14 |
| - wrapt==1.17.2 |
| - wsproto==1.2.0 |
| - xarray==2024.11.0 |
| - xarray-dataclass==3.0.0 |
| - xarray-dataclasses==1.9.1 |
| - xarray-einstats==0.9.1 |
| - xarray-schema==0.0.3 |
| - xarray-spatial==0.4.0 |
| - yamlordereddictloader==0.4.2 |
| - yarl==1.20.1 |
| - zarr==2.18.7 |
| - zict==3.0.0 |
| - zstandard==0.23.0 |
| - mi-googlesearch-python==1.3.0.post1 |
|
|
