Jacobellis Dan (dgj335) commited on
Commit ·
3628d04
1
Parent(s): a3378d9
metadata
Browse files- README.ipynb +18 -3
- README.md +41 -26
- README_files/README_9_0.jpg +0 -0
- README_files/README_9_0.png +0 -0
- README_files/README_9_1.jpg +0 -0
- README_files/README_9_1.png +0 -0
- README_files/README_9_10.jpg +0 -0
- README_files/README_9_10.png +0 -0
- README_files/README_9_11.jpg +0 -0
- README_files/README_9_11.png +0 -0
- README_files/README_9_12.jpg +0 -0
- README_files/README_9_12.png +0 -0
- README_files/README_9_13.jpg +0 -0
- README_files/README_9_13.png +0 -0
- README_files/README_9_14.jpg +0 -0
- README_files/README_9_14.png +0 -0
- README_files/README_9_15.jpg +0 -0
- README_files/README_9_15.png +0 -0
- README_files/README_9_16.jpg +0 -0
- README_files/README_9_16.png +0 -0
- README_files/README_9_17.jpg +0 -0
- README_files/README_9_17.png +0 -0
- README_files/README_9_18.jpg +0 -0
- README_files/README_9_18.png +0 -0
- README_files/README_9_19.jpg +0 -0
- README_files/README_9_19.png +0 -0
- README_files/README_9_2.jpg +0 -0
- README_files/README_9_2.png +0 -0
- README_files/README_9_20.jpg +0 -0
- README_files/README_9_20.png +0 -0
- README_files/README_9_21.jpg +0 -0
- README_files/README_9_21.png +0 -0
- README_files/README_9_22.jpg +0 -0
- README_files/README_9_22.png +0 -0
- README_files/README_9_23.jpg +0 -0
- README_files/README_9_23.png +0 -0
- README_files/README_9_3.jpg +0 -0
- README_files/README_9_3.png +0 -0
- README_files/README_9_4.jpg +0 -0
- README_files/README_9_4.png +0 -0
- README_files/README_9_5.jpg +0 -0
- README_files/README_9_5.png +0 -0
- README_files/README_9_6.jpg +0 -0
- README_files/README_9_6.png +0 -0
- README_files/README_9_7.jpg +0 -0
- README_files/README_9_7.png +0 -0
- README_files/README_9_8.jpg +0 -0
- README_files/README_9_8.png +0 -0
- README_files/README_9_9.jpg +0 -0
- README_files/README_9_9.png +0 -0
README.ipynb
CHANGED
|
@@ -1,5 +1,21 @@
|
|
| 1 |
{
|
| 2 |
"cells": [
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 3 |
{
|
| 4 |
"cell_type": "code",
|
| 5 |
"execution_count": 1,
|
|
@@ -511,7 +527,7 @@
|
|
| 511 |
},
|
| 512 |
{
|
| 513 |
"cell_type": "code",
|
| 514 |
-
"execution_count":
|
| 515 |
"id": "ec5fceef-3c7e-4f7f-8cee-802f0b08f53a",
|
| 516 |
"metadata": {},
|
| 517 |
"outputs": [
|
|
@@ -521,8 +537,7 @@
|
|
| 521 |
"text": [
|
| 522 |
"[NbConvertApp] Converting notebook README.ipynb to markdown\n",
|
| 523 |
"[NbConvertApp] Support files will be in README_files/\n",
|
| 524 |
-
"[NbConvertApp]
|
| 525 |
-
"[NbConvertApp] Writing 7092 bytes to README.md\n"
|
| 526 |
]
|
| 527 |
}
|
| 528 |
],
|
|
|
|
| 1 |
{
|
| 2 |
"cells": [
|
| 3 |
+
{
|
| 4 |
+
"cell_type": "raw",
|
| 5 |
+
"id": "a5015ad6-39ff-4805-85b2-4a962ce0f97a",
|
| 6 |
+
"metadata": {},
|
| 7 |
+
"source": [
|
| 8 |
+
"---\n",
|
| 9 |
+
"datasets:\n",
|
| 10 |
+
"- danjacobellis/cell_seg_labeled\n",
|
| 11 |
+
"- danjacobellis/cell_seg\n",
|
| 12 |
+
"pipeline_tag: image-feature-extraction\n",
|
| 13 |
+
"tags:\n",
|
| 14 |
+
"- biology\n",
|
| 15 |
+
"- medical\n",
|
| 16 |
+
"---"
|
| 17 |
+
]
|
| 18 |
+
},
|
| 19 |
{
|
| 20 |
"cell_type": "code",
|
| 21 |
"execution_count": 1,
|
|
|
|
| 527 |
},
|
| 528 |
{
|
| 529 |
"cell_type": "code",
|
| 530 |
+
"execution_count": 11,
|
| 531 |
"id": "ec5fceef-3c7e-4f7f-8cee-802f0b08f53a",
|
| 532 |
"metadata": {},
|
| 533 |
"outputs": [
|
|
|
|
| 537 |
"text": [
|
| 538 |
"[NbConvertApp] Converting notebook README.ipynb to markdown\n",
|
| 539 |
"[NbConvertApp] Support files will be in README_files/\n",
|
| 540 |
+
"[NbConvertApp] Writing 7517 bytes to README.md\n"
|
|
|
|
| 541 |
]
|
| 542 |
}
|
| 543 |
],
|
README.md
CHANGED
|
@@ -1,3 +1,13 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
```python
|
| 2 |
import torch
|
| 3 |
import numpy as np
|
|
@@ -16,7 +26,7 @@ class Args: pass
|
|
| 16 |
|
| 17 |
```python
|
| 18 |
device = "cpu"
|
| 19 |
-
checkpoint = torch.load("
|
| 20 |
args = checkpoint['args']
|
| 21 |
args.crops_per_sample = 1
|
| 22 |
|
|
@@ -194,149 +204,154 @@ for i_img, img in enumerate(x):
|
|
| 194 |
|
| 195 |
|
| 196 |
|
| 197 |
-

|
| 30 |
args = checkpoint['args']
|
| 31 |
args.crops_per_sample = 1
|
| 32 |
|
|
|
|
| 204 |
|
| 205 |
|
| 206 |
|
| 207 |
+

|
| 208 |
|
| 209 |
|
| 210 |
|
| 211 |
|
| 212 |
|
| 213 |
+

|
| 214 |
|
| 215 |
|
| 216 |
|
| 217 |
|
| 218 |
|
| 219 |
+

|
| 220 |
|
| 221 |
|
| 222 |
|
| 223 |
|
| 224 |
|
| 225 |
+

|
| 226 |
|
| 227 |
|
| 228 |
|
| 229 |
|
| 230 |
|
| 231 |
+

|
| 232 |
|
| 233 |
|
| 234 |
|
| 235 |
|
| 236 |
|
| 237 |
+

|
| 238 |
|
| 239 |
|
| 240 |
|
| 241 |
|
| 242 |
|
| 243 |
+

|
| 244 |
|
| 245 |
|
| 246 |
|
| 247 |
|
| 248 |
|
| 249 |
+

|
| 250 |
|
| 251 |
|
| 252 |
|
| 253 |
|
| 254 |
|
| 255 |
+

|
| 256 |
|
| 257 |
|
| 258 |
|
| 259 |
|
| 260 |
|
| 261 |
+

|
| 262 |
|
| 263 |
|
| 264 |
|
| 265 |
|
| 266 |
|
| 267 |
+

|
| 268 |
|
| 269 |
|
| 270 |
|
| 271 |
|
| 272 |
|
| 273 |
+

|
| 274 |
|
| 275 |
|
| 276 |
|
| 277 |
|
| 278 |
|
| 279 |
+

|
| 280 |
|
| 281 |
|
| 282 |
|
| 283 |
|
| 284 |
|
| 285 |
+

|
| 286 |
|
| 287 |
|
| 288 |
|
| 289 |
|
| 290 |
|
| 291 |
+

|
| 292 |
|
| 293 |
|
| 294 |
|
| 295 |
|
| 296 |
|
| 297 |
+

|
| 298 |
|
| 299 |
|
| 300 |
|
| 301 |
|
| 302 |
|
| 303 |
+

|
| 304 |
|
| 305 |
|
| 306 |
|
| 307 |
|
| 308 |
|
| 309 |
+

|
| 310 |
|
| 311 |
|
| 312 |
|
| 313 |
|
| 314 |
|
| 315 |
+

|
| 316 |
|
| 317 |
|
| 318 |
|
| 319 |
|
| 320 |
|
| 321 |
+

|
| 322 |
|
| 323 |
|
| 324 |
|
| 325 |
|
| 326 |
|
| 327 |
+

|
| 328 |
|
| 329 |
|
| 330 |
|
| 331 |
|
| 332 |
|
| 333 |
+

|
| 334 |
|
| 335 |
|
| 336 |
|
| 337 |
|
| 338 |
|
| 339 |
+

|
| 340 |
|
| 341 |
|
| 342 |
|
| 343 |
|
| 344 |
|
| 345 |
+

|
| 346 |
|
| 347 |
|
| 348 |
|
| 349 |
|
| 350 |
```python
|
| 351 |
+
!jupyter nbconvert --to markdown README.ipynb
|
| 352 |
```
|
| 353 |
+
|
| 354 |
+
[NbConvertApp] Converting notebook README.ipynb to markdown
|
| 355 |
+
[NbConvertApp] Support files will be in README_files/
|
| 356 |
+
[NbConvertApp] Writing 7517 bytes to README.md
|
| 357 |
+
|
README_files/README_9_0.jpg
ADDED
|
README_files/README_9_0.png
ADDED
|
README_files/README_9_1.jpg
ADDED
|
README_files/README_9_1.png
ADDED
|
README_files/README_9_10.jpg
ADDED
|
README_files/README_9_10.png
ADDED
|
README_files/README_9_11.jpg
ADDED
|
README_files/README_9_11.png
ADDED
|
README_files/README_9_12.jpg
ADDED
|
README_files/README_9_12.png
ADDED
|
README_files/README_9_13.jpg
ADDED
|
README_files/README_9_13.png
ADDED
|
README_files/README_9_14.jpg
ADDED
|
README_files/README_9_14.png
ADDED
|
README_files/README_9_15.jpg
ADDED
|
README_files/README_9_15.png
ADDED
|
README_files/README_9_16.jpg
ADDED
|
README_files/README_9_16.png
ADDED
|
README_files/README_9_17.jpg
ADDED
|
README_files/README_9_17.png
ADDED
|
README_files/README_9_18.jpg
ADDED
|
README_files/README_9_18.png
ADDED
|
README_files/README_9_19.jpg
ADDED
|
README_files/README_9_19.png
ADDED
|
README_files/README_9_2.jpg
ADDED
|
README_files/README_9_2.png
ADDED
|
README_files/README_9_20.jpg
ADDED
|
README_files/README_9_20.png
ADDED
|
README_files/README_9_21.jpg
ADDED
|
README_files/README_9_21.png
ADDED
|
README_files/README_9_22.jpg
ADDED
|
README_files/README_9_22.png
ADDED
|
README_files/README_9_23.jpg
ADDED
|
README_files/README_9_23.png
ADDED
|
README_files/README_9_3.jpg
ADDED
|
README_files/README_9_3.png
ADDED
|
README_files/README_9_4.jpg
ADDED
|
README_files/README_9_4.png
ADDED
|
README_files/README_9_5.jpg
ADDED
|
README_files/README_9_5.png
ADDED
|
README_files/README_9_6.jpg
ADDED
|
README_files/README_9_6.png
ADDED
|
README_files/README_9_7.jpg
ADDED
|
README_files/README_9_7.png
ADDED
|
README_files/README_9_8.jpg
ADDED
|
README_files/README_9_8.png
ADDED
|
README_files/README_9_9.jpg
ADDED
|
README_files/README_9_9.png
ADDED
|