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description: Attribute Standardizer Output Schema in alignment with BEDBASE schema
properties:
sample_name: #Not predicted by the model.
type: string
description: "Name of the sample"
genome:
type: string
description: "Type of Genome Assemblies (eg. GRCh38)"
species_name:
type: string
description: "Name of species. e.g. Homo sapiens.", alias="organism"
species_id:
type: string
description: "Species identifier, resolvable by identifiers.org (eg. taxonomy:9606)"
genotype:
type: string
description: "Genotype of the sample"
phenotype:
type: string
description: "Phenotype of the sample"
cell_type:
type: string
description: "Cell type, population of cells that can be grown indefinitely in the lab, used for research, drug testing, and studying biological processes"
cell_line:
type: string
description: "A cultured, immortalized cell population derived from a single cell type, used for experimental research or therapeutic purposes."
tissue:
type: string
description: "Tissue type"
library_source:
type: string
description: "Library source (e.g. genomic, transcriptomic)"
assay:
type: string
description: "Experimental protocol (e.g. ChIP-seq)", alias="exp_protocol"
antibody:
type: string
description: "Antibody used in the assay"
target:
type: string
description: "Target of the assay (e.g. H3K4me3)"
treatment:
type: string
description: "Treatment of the sample (e.g. drug treatment)"
required:
- None |