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@@ -1,320 +1,326 @@
----
-license: other
-license_name: physionet-credentialed-health-data-1.5.0
-license_link: https://physionet.org/content/mimiciv/view-license/3.1/
-pretty_name: ADS599 Capstone Modeling Data — Empty Patient State
-dataset_info:
-- config_name: all_med_actions
-  features:
-  - name: ed_stay_id
-    dtype: float64
-  - name: subject_id
-    dtype: int64
-  - name: charttime
-    dtype: timestamp[ns]
-  - name: minutes_into_stay
-    dtype: float64
-  - name: drug_class
-    dtype: string
-  - name: action_idx
-    dtype: int64
-  - name: source
-    dtype: string
-  splits:
-  - name: all_med_actions
-    num_bytes: 93408141
-    num_examples: 1235609
-  download_size: 16415454
-  dataset_size: 93408141
-- config_name: combined_medication_features
-  features:
-  - name: ed_stay_id
-    dtype: int64
-  - name: subject_id
-    dtype: int64
-  - name: recon_ace_inhibitor
-    dtype: uint8
-  - name: recon_analgesic___nsaid
-    dtype: uint8
-  - name: recon_analgesic___opioid_nsaid
-    dtype: uint8
-  - name: recon_antiarrhythmic
-    dtype: uint8
-  - name: recon_antibiotic
-    dtype: uint8
-  - name: recon_anticoagulant
-    dtype: uint8
-  - name: recon_anticonvulsant
-    dtype: uint8
-  - name: recon_antiemetic
-    dtype: uint8
-  - name: recon_antiplatelet
-    dtype: uint8
-  - name: recon_antipsychotic
-    dtype: uint8
-  - name: recon_benzodiazepine___sedative_anxiolytic
-    dtype: uint8
-  - name: recon_beta_blocker
-    dtype: uint8
-  - name: recon_bronchodilator
-    dtype: uint8
-  - name: recon_calcium_channel_blocker
-    dtype: uint8
-  - name: recon_corticosteroid
-    dtype: uint8
-  - name: recon_diuretic
-    dtype: uint8
-  - name: recon_gi___acid_suppression
-    dtype: uint8
-  - name: recon_insulin_glucose
-    dtype: uint8
-  - name: recon_nitrate
-    dtype: uint8
-  - name: recon_n_total_meds
-    dtype: uint16
-  - name: recon_n_drug_classes
-    dtype: uint8
-  - name: edmeds_ace_inhibitor
-    dtype: uint8
-  - name: edmeds_analgesic___acetaminophen
-    dtype: uint8
-  - name: edmeds_analgesic___nsaid
-    dtype: uint8
-  - name: edmeds_analgesic___opioid_nsaid
-    dtype: uint8
-  - name: edmeds_antiarrhythmic
-    dtype: uint8
-  - name: edmeds_antibiotic
-    dtype: uint8
-  - name: edmeds_anticoagulant
-    dtype: uint8
-  - name: edmeds_anticonvulsant
-    dtype: uint8
-  - name: edmeds_antiemetic
-    dtype: uint8
-  - name: edmeds_antiplatelet
-    dtype: uint8
-  - name: edmeds_antipsychotic
-    dtype: uint8
-  - name: edmeds_benzodiazepine___sedative_anxiolytic
-    dtype: uint8
-  - name: edmeds_beta_blocker
-    dtype: uint8
-  - name: edmeds_bronchodilator
-    dtype: uint8
-  - name: edmeds_calcium_channel_blocker
-    dtype: uint8
-  - name: edmeds_corticosteroid
-    dtype: uint8
-  - name: edmeds_diuretic
-    dtype: uint8
-  - name: edmeds_gi___acid_suppression
-    dtype: uint8
-  - name: edmeds_iv_fluid
-    dtype: uint8
-  - name: edmeds_insulin_glucose
-    dtype: uint8
-  - name: edmeds_nitrate
-    dtype: uint8
-  - name: edmeds_other
-    dtype: uint8
-  - name: edmeds_n_dispenses
-    dtype: uint16
-  - name: edmeds_n_drug_classes
-    dtype: uint8
-  splits:
-  - name: med_only
-    num_bytes: 25173099
-    num_examples: 399573
-  download_size: 6049182
-  dataset_size: 25173099
-- config_name: ed_meds_timestep
-  features:
-  - name: ed_stay_id
-    dtype: float64
-  - name: subject_id
-    dtype: int64
-  - name: charttime
-    dtype: timestamp[ns]
-  - name: minutes_into_stay
-    dtype: float64
-  - name: drug_class
-    dtype: string
-  - name: action_idx
-    dtype: int64
-  - name: source
-    dtype: string
-  - name: __index_level_0__
-    dtype: int64
-  splits:
-  - name: ed_meds_timestep
-    num_bytes: 27076675
-    num_examples: 323190
-  download_size: 7130448
-  dataset_size: 27076675
-- config_name: empty_patient_state
-  features:
-  - name: subject_id
-    dtype: int64
-  - name: ed_stay_id
-    dtype: int64
-  - name: hadm_id
-    dtype: float64
-  - name: time_steps
-    dtype: int64
-  splits:
-  - name: empty_patient_state
-    num_bytes: 4324549602
-    num_examples: 134616330
-  download_size: 11217914
-  dataset_size: 4324549602
-- config_name: meds_admitted_er_actions
-  features:
-  - name: subject_id
-    dtype: int64
-  - name: stay_id
-    dtype: int64
-  - name: hadm_id
-    dtype: float64
-  - name: pyxis_charttime
-    dtype: timestamp[ns, tz=UTC]
-  - name: pyxis_med_rn
-    dtype: float64
-  - name: pyxis_medication
-    dtype: string
-  - name: emar_id
-    dtype: 'null'
-  - name: emar_charttime
-    dtype: timestamp[ns, tz=UTC]
-  - name: emar_medication
-    dtype: 'null'
-  - name: event_txt
-    dtype: 'null'
-  - name: scheduletime
-    dtype: 'null'
-  - name: in_er
-    dtype: bool
-  - name: medication
-    dtype: string
-  - name: drug_class
-    dtype: string
-  - name: action_time
-    dtype: timestamp[ns]
-  - name: ed_stay_id
-    dtype: float64
-  - name: ed_intime
-    dtype: timestamp[ns]
-  - name: minutes_into_stay
-    dtype: float64
-  - name: action_idx
-    dtype: int64
-  - name: __index_level_0__
-    dtype: int64
-  splits:
-  - name: adm_er_clean
-    num_bytes: 148079076
-    num_examples: 912419
-  download_size: 29150917
-  dataset_size: 148079076
-- config_name: vitals
-  features:
-  - name: ed_stay_id
-    dtype: int64
-  - name: subject_id
-    dtype: int64
-  - name: charttime
-    dtype: timestamp[us]
-  - name: temperature
-    dtype: float64
-  - name: heartrate
-    dtype: float64
-  - name: resprate
-    dtype: float64
-  - name: o2sat
-    dtype: float64
-  - name: sbp
-    dtype: float64
-  - name: dbp
-    dtype: float64
-  - name: pain
-    dtype: large_string
-  - name: time_since_last_hrs
-    dtype: float64
-  - name: temperature_rolling2h
-    dtype: float64
-  - name: temperature_delta
-    dtype: float64
-  - name: temperature_rate
-    dtype: float64
-  - name: heartrate_rolling2h
-    dtype: float64
-  - name: heartrate_delta
-    dtype: float64
-  - name: heartrate_rate
-    dtype: float64
-  - name: resprate_rolling2h
-    dtype: float64
-  - name: resprate_delta
-    dtype: float64
-  - name: resprate_rate
-    dtype: float64
-  - name: o2sat_rolling2h
-    dtype: float64
-  - name: o2sat_delta
-    dtype: float64
-  - name: o2sat_rate
-    dtype: float64
-  - name: sbp_rolling2h
-    dtype: float64
-  - name: sbp_delta
-    dtype: float64
-  - name: sbp_rate
-    dtype: float64
-  - name: dbp_rolling2h
-    dtype: float64
-  - name: dbp_delta
-    dtype: float64
-  - name: dbp_rate
-    dtype: float64
-  - name: pulse_pressure
-    dtype: float64
-  - name: map
-    dtype: float64
-  splits:
-  - name: vitals
-    num_bytes: 479613448
-    num_examples: 1893713
-  download_size: 84005509
-  dataset_size: 479613448
-configs:
-- config_name: all_med_actions
-  data_files:
-  - split: all_med_actions
-    path: modeling_data/all_med_actions-*
-- config_name: combined_medication_features
-  data_files:
-  - split: med_only
-    path: modeling_data/med_only-*
-- config_name: ed_meds_timestep
-  data_files:
-  - split: ed_meds_timestep
-    path: modeling_data/ed_meds_timestep-*
-- config_name: empty_patient_state
-  data_files:
-  - split: empty_patient_state
-    path: patient_state/*.parquet
-- config_name: meds_admitted_er_actions
-  data_files:
-  - split: adm_er_clean
-    path: modeling_data/adm_er_clean-*
-- config_name: vitals
-  data_files:
-  - split: vitals
-    path: vitals_triage/vitals-*
----
-
-## empty_patient_state
-
-Empty data frame for patient state. Subject_id, ed_stay_id and hadm_id are retained for identification. A row is added for each 10 min time block for that unique stay
-
-**License:** PhysioNet Credentialed Health Data License 1.5.0 — https://physionet.org/content/mimiciv/view-license/3.1/
+---
+license: other
+license_name: physionet-credentialed-health-data-1.5.0
+license_link: https://physionet.org/content/mimiciv/view-license/3.1/
+pretty_name: ADS599 Capstone Modeling Data — Empty Patient State
+dataset_info:
+- config_name: all_med_actions
+  features:
+  - name: ed_stay_id
+    dtype: float64
+  - name: subject_id
+    dtype: int64
+  - name: charttime
+    dtype: timestamp[ns]
+  - name: minutes_into_stay
+    dtype: float64
+  - name: drug_class
+    dtype: string
+  - name: action_idx
+    dtype: int64
+  - name: source
+    dtype: string
+  splits:
+  - name: all_med_actions
+    num_bytes: 93408141
+    num_examples: 1235609
+  download_size: 16415454
+  dataset_size: 93408141
+- config_name: combined_medication_features
+  features:
+  - name: ed_stay_id
+    dtype: int64
+  - name: subject_id
+    dtype: int64
+  - name: recon_ace_inhibitor
+    dtype: uint8
+  - name: recon_analgesic___nsaid
+    dtype: uint8
+  - name: recon_analgesic___opioid_nsaid
+    dtype: uint8
+  - name: recon_antiarrhythmic
+    dtype: uint8
+  - name: recon_antibiotic
+    dtype: uint8
+  - name: recon_anticoagulant
+    dtype: uint8
+  - name: recon_anticonvulsant
+    dtype: uint8
+  - name: recon_antiemetic
+    dtype: uint8
+  - name: recon_antiplatelet
+    dtype: uint8
+  - name: recon_antipsychotic
+    dtype: uint8
+  - name: recon_benzodiazepine___sedative_anxiolytic
+    dtype: uint8
+  - name: recon_beta_blocker
+    dtype: uint8
+  - name: recon_bronchodilator
+    dtype: uint8
+  - name: recon_calcium_channel_blocker
+    dtype: uint8
+  - name: recon_corticosteroid
+    dtype: uint8
+  - name: recon_diuretic
+    dtype: uint8
+  - name: recon_gi___acid_suppression
+    dtype: uint8
+  - name: recon_insulin_glucose
+    dtype: uint8
+  - name: recon_nitrate
+    dtype: uint8
+  - name: recon_n_total_meds
+    dtype: uint16
+  - name: recon_n_drug_classes
+    dtype: uint8
+  - name: edmeds_ace_inhibitor
+    dtype: uint8
+  - name: edmeds_analgesic___acetaminophen
+    dtype: uint8
+  - name: edmeds_analgesic___nsaid
+    dtype: uint8
+  - name: edmeds_analgesic___opioid_nsaid
+    dtype: uint8
+  - name: edmeds_antiarrhythmic
+    dtype: uint8
+  - name: edmeds_antibiotic
+    dtype: uint8
+  - name: edmeds_anticoagulant
+    dtype: uint8
+  - name: edmeds_anticonvulsant
+    dtype: uint8
+  - name: edmeds_antiemetic
+    dtype: uint8
+  - name: edmeds_antiplatelet
+    dtype: uint8
+  - name: edmeds_antipsychotic
+    dtype: uint8
+  - name: edmeds_benzodiazepine___sedative_anxiolytic
+    dtype: uint8
+  - name: edmeds_beta_blocker
+    dtype: uint8
+  - name: edmeds_bronchodilator
+    dtype: uint8
+  - name: edmeds_calcium_channel_blocker
+    dtype: uint8
+  - name: edmeds_corticosteroid
+    dtype: uint8
+  - name: edmeds_diuretic
+    dtype: uint8
+  - name: edmeds_gi___acid_suppression
+    dtype: uint8
+  - name: edmeds_iv_fluid
+    dtype: uint8
+  - name: edmeds_insulin_glucose
+    dtype: uint8
+  - name: edmeds_nitrate
+    dtype: uint8
+  - name: edmeds_other
+    dtype: uint8
+  - name: edmeds_n_dispenses
+    dtype: uint16
+  - name: edmeds_n_drug_classes
+    dtype: uint8
+  splits:
+  - name: med_only
+    num_bytes: 25173099
+    num_examples: 399573
+  download_size: 6049182
+  dataset_size: 25173099
+- config_name: ed_meds_timestep
+  features:
+  - name: ed_stay_id
+    dtype: float64
+  - name: subject_id
+    dtype: int64
+  - name: charttime
+    dtype: timestamp[ns]
+  - name: minutes_into_stay
+    dtype: float64
+  - name: drug_class
+    dtype: string
+  - name: action_idx
+    dtype: int64
+  - name: source
+    dtype: string
+  - name: __index_level_0__
+    dtype: int64
+  splits:
+  - name: ed_meds_timestep
+    num_bytes: 27076675
+    num_examples: 323190
+  download_size: 7130448
+  dataset_size: 27076675
+- config_name: empty_patient_state
+  features:
+  - name: subject_id
+    dtype: int64
+  - name: ed_stay_id
+    dtype: int64
+  - name: hadm_id
+    dtype: float64
+  - name: time_steps
+    dtype: int64
+  splits:
+  - name: empty_patient_state
+    num_bytes: 4324549602
+    num_examples: 134616330
+  download_size: 11217914
+  dataset_size: 4324549602
+- config_name: meds_admitted_er_actions
+  features:
+  - name: subject_id
+    dtype: int64
+  - name: stay_id
+    dtype: int64
+  - name: hadm_id
+    dtype: float64
+  - name: pyxis_charttime
+    dtype: timestamp[ns, tz=UTC]
+  - name: pyxis_med_rn
+    dtype: float64
+  - name: pyxis_medication
+    dtype: string
+  - name: emar_id
+    dtype: 'null'
+  - name: emar_charttime
+    dtype: timestamp[ns, tz=UTC]
+  - name: emar_medication
+    dtype: 'null'
+  - name: event_txt
+    dtype: 'null'
+  - name: scheduletime
+    dtype: 'null'
+  - name: in_er
+    dtype: bool
+  - name: medication
+    dtype: string
+  - name: drug_class
+    dtype: string
+  - name: action_time
+    dtype: timestamp[ns]
+  - name: ed_stay_id
+    dtype: float64
+  - name: ed_intime
+    dtype: timestamp[ns]
+  - name: minutes_into_stay
+    dtype: float64
+  - name: action_idx
+    dtype: int64
+  - name: __index_level_0__
+    dtype: int64
+  splits:
+  - name: adm_er_clean
+    num_bytes: 148079076
+    num_examples: 912419
+  download_size: 29150917
+  dataset_size: 148079076
+- config_name: vitals
+  features:
+  - name: ed_stay_id
+    dtype: int64
+  - name: subject_id
+    dtype: int64
+  - name: charttime
+    dtype: timestamp[us]
+  - name: temperature
+    dtype: float64
+  - name: heartrate
+    dtype: float64
+  - name: resprate
+    dtype: float64
+  - name: o2sat
+    dtype: float64
+  - name: sbp
+    dtype: float64
+  - name: dbp
+    dtype: float64
+  - name: pain
+    dtype: large_string
+  - name: time_since_last_hrs
+    dtype: float64
+  - name: temperature_rolling2h
+    dtype: float64
+  - name: temperature_delta
+    dtype: float64
+  - name: temperature_rate
+    dtype: float64
+  - name: heartrate_rolling2h
+    dtype: float64
+  - name: heartrate_delta
+    dtype: float64
+  - name: heartrate_rate
+    dtype: float64
+  - name: resprate_rolling2h
+    dtype: float64
+  - name: resprate_delta
+    dtype: float64
+  - name: resprate_rate
+    dtype: float64
+  - name: o2sat_rolling2h
+    dtype: float64
+  - name: o2sat_delta
+    dtype: float64
+  - name: o2sat_rate
+    dtype: float64
+  - name: sbp_rolling2h
+    dtype: float64
+  - name: sbp_delta
+    dtype: float64
+  - name: sbp_rate
+    dtype: float64
+  - name: dbp_rolling2h
+    dtype: float64
+  - name: dbp_delta
+    dtype: float64
+  - name: dbp_rate
+    dtype: float64
+  - name: pulse_pressure
+    dtype: float64
+  - name: map
+    dtype: float64
+  splits:
+  - name: vitals
+    num_bytes: 479613448
+    num_examples: 1893713
+  download_size: 84005509
+  dataset_size: 479613448
+configs:
+- config_name: all_med_actions
+  data_files:
+  - split: all_med_actions
+    path: modeling_data/all_med_actions-*
+- config_name: combined_medication_features
+  data_files:
+  - split: med_only
+    path: modeling_data/med_only-*
+- config_name: ed_meds_timestep
+  data_files:
+  - split: ed_meds_timestep
+    path: modeling_data/ed_meds_timestep-*
+- config_name: empty_patient_state
+  data_files:
+  - split: empty_patient_state
+    path: patient_state/*.parquet
+- config_name: meds_admitted_er_actions
+  data_files:
+  - split: adm_er_clean
+    path: modeling_data/adm_er_clean-*
+- config_name: vitals
+  data_files:
+  - split: vitals
+    path: vitals_triage/*.parquet
+---
+
+## empty_patient_state
+
+Empty data frame for patient state. Subject_id, ed_stay_id and hadm_id are retained for identification. A row is added for each 10 min time block for that unique stay
+
+**License:** PhysioNet Credentialed Health Data License 1.5.0 — https://physionet.org/content/mimiciv/view-license/3.1/
+
+## vitals
+
+Vitals cleaned using the same pattern and methods as the triage stats.  Rhythm was dropped. Triage stats were added for each ed stay Missing values were handled using forward fill then backward fill for the groups that did not have an initial value. Remaining NaN values were filled using Iterative Imputer from sci-kit learn.  Features were engineered for each vital to get a rolling 2h average, the delta from the most recent value, a time delta, rate of change, a general time delta, pulse pressure, and average perfusion pressure 
+
+**License:** PhysioNet Credentialed Health Data License 1.5.0 — https://physionet.org/content/mimiciv/view-license/3.1/