================================================================================ RUNNER FOLDS | FIXED STRATIFIED 10-PHASE 8/1/1 ================================================================================ Experiment name : stratified_holdout_v1 Resume folds : False Experiment root : /workspace/runs/TransUNet_Simplified_Phase1/repeated_holdout/stratified_holdout_v1 Experiment DB : /workspace/runs/TransUNet_Simplified_Phase1/repeated_holdout/stratified_holdout_v1/experiment_state.sqlite3 Dataset name : BUSI_with_classes Split type : 80_10_10 Split generation mode : fixed_stratified_phases_8_1_1 Generation display : fixed stratified 10-phase 8/1/1 Phase count : 10 Phase val offset : 1 Phase execution mode : manual Train percent mode : 100% of phase-train only Selected phases : [1] Sampling mode : incremental Repeat execution mode : auto Percent execution mode: manual Selected percents : [100] Strategies : [2, 3] Percent repeats : 100% x1 Execution mode : train_eval Run smoke test : True Test iter control : False Test iter target t : 1 Run overfit test : False Run Optuna : False Load existing studies : False Repo backup enabled : False Phase timing summary : /workspace/runs/TransUNet_Simplified_Phase1/repeated_holdout/stratified_holdout_v1/phase_timing_summary.json Backbone : SMP R50-ViT-B_16 [Pipeline Check] Validated BUSI_with_classes metadata from /workspace/BUSI_with_classes/pipeline_check.json -------------------------------------------------------------------------------- Loaded Class Distribution | 80_10_10 | 100% -------------------------------------------------------------------------------- Base train classes : benign=349, malignant=168, total=517 Train subset classes : benign=349, malignant=168, total=517 Validation classes : benign=44, malignant=21, total=65 Test classes : benign=44, malignant=21, total=65 Computing BUSI train mean/std: 0%| | 0/517 [00:00 tgt (1, 64, 768) (interpolated) [TransUNet] PosEmbed updated : True [TransUNet] ResNet root conv updated: True [TransUNet] ViT block-0 query updated: True [TransUNet] img_size=128, patches.grid=(8, 8), n_skip=3, n_classes=1 -------------------------------------------------------------------------------- Model Parameter Summary | Strategy 2: SMP TransUNet (R50-ViT-B_16) supervised | Smoke Test -------------------------------------------------------------------------------- Strategy : 2 Model : Strategy 2: SMP TransUNet (R50-ViT-B_16) supervised | Smoke Test Dropout p : 0.2000 Total params : 105,174,545 Trainable params : 105,174,545 Frozen params : 0 BN layers : 9 GN layers : 52 channels_last : True AMP dtype : torch.bfloat16 torch.compile : True Backbone family : smp encoder : 97,787,200 decoder : 7,387,200 segmentation_head : 145 dropout : 0 [CUDA Cleanup] smoke phase=001 | repeat=01 | strategy=2 | pct=100%: allocated=0.01 GB, reserved=0.02 GB, peak=0.67 GB [Smoke Test] phase=001 | repeat=01 | strategy=2 | pct=100% passed. Saved panel to smoke_panel.png and mask to smoke_prediction.png. [Optuna Off] Using manual hyperparameters for strategy=2, percent=100% from /workspace/TransUNet_Setup/best_params_strat2.json. head_lr : 3.921e-04 encoder_lr : 2.158e-04 weight_decay : 2.50812e-05 dropout_p : 0.15427 tmax : 5 entropy_lr : 3.000e-04 load_pretrained: grid-size from 14 to 8 -------------------------------------------------------------------------------- TransUNet Checkpoint Verification -------------------------------------------------------------------------------- [TransUNet] OK Loaded R50+ViT-B/16 ImageNet checkpoint [TransUNet] File : /workspace/model/vit_checkpoint/imagenet21k/R50+ViT-B_16.npz (439.9 MB) [TransUNet] NPZ arrays : 358 [TransUNet] PosEmbed shape : src (1, 197, 768) -> tgt (1, 64, 768) (interpolated) [TransUNet] PosEmbed updated : True [TransUNet] ResNet root conv updated: True [TransUNet] ViT block-0 query updated: True [TransUNet] img_size=128, patches.grid=(8, 8), n_skip=3, n_classes=1 -------------------------------------------------------------------------------- Model Parameter Summary | Strategy 2: SMP TransUNet (R50-ViT-B_16) supervised -------------------------------------------------------------------------------- Strategy : 2 Model : Strategy 2: SMP TransUNet (R50-ViT-B_16) supervised Dropout p : 0.1543 Total params : 105,174,545 Trainable params : 105,174,545 Frozen params : 0 BN layers : 9 GN layers : 52 channels_last : True AMP dtype : torch.bfloat16 torch.compile : True Backbone family : smp encoder : 97,787,200 decoder : 7,387,200 segmentation_head : 145 dropout : 0 Epoch 1/100: 0%| | 0/17 [00:00 tgt (1, 64, 768) (interpolated) [TransUNet] PosEmbed updated : True [TransUNet] ResNet root conv updated: True [TransUNet] ViT block-0 query updated: True [TransUNet] img_size=128, patches.grid=(8, 8), n_skip=3, n_classes=1 [Checkpoint Restore] path=/workspace/runs/TransUNet_Simplified_Phase1/repeated_holdout/stratified_holdout_v1/phase_001/pct_100/repeat_01/strategy_2/final/checkpoints/best.pt epoch=78 run_type=final backbone=smp Evaluating: 0%| | 0/3 [00:00 tgt (1, 64, 768) (interpolated) [TransUNet] PosEmbed updated : True [TransUNet] ResNet root conv updated: True [TransUNet] ViT block-0 query updated: True [TransUNet] img_size=128, patches.grid=(8, 8), n_skip=3, n_classes=1 -------------------------------------------------------------------------------- Strategy 2 Bootstrap OK | strategy3.smp_model -------------------------------------------------------------------------------- Checkpoint : /workspace/runs/TransUNet_Simplified_Phase1/repeated_holdout/stratified_holdout_v1/phase_001/pct_100/repeat_01/strategy_2/final/checkpoints/best.pt Checkpoint prefix : smp_model. Loaded tensors : 409 Strict load : passed -------------------------------------------------------------------------------- Model Parameter Summary | Strategy 3 Lite: SMP TransUNet (R50-ViT-B_16) + RL | Smoke Test -------------------------------------------------------------------------------- Strategy : 3 Model : Strategy 3 Lite: SMP TransUNet (R50-ViT-B_16) + RL | Smoke Test Dropout p : 0.2000 Total params : 107,733,138 Trainable params : 2,558,593 Frozen params : 105,174,545 BN layers : 9 GN layers : 58 channels_last : True AMP dtype : torch.bfloat16 torch.compile : True Backbone family : smp S3 variant : lite S3 bootstrap loaded : True S3 freeze requested : True S3 frozen now : True S3 encoder state : frozen S3 decoder state : frozen S3 seg head state : frozen encoder : 97,787,200 decoder : 7,387,200 segmentation_head : 145 sam : 0 policy_head : 959,873 value_head : 0 [CUDA Cleanup] smoke phase=001 | repeat=01 | strategy=3 | pct=100%: allocated=0.02 GB, reserved=0.04 GB, peak=1.61 GB [Smoke Test] phase=001 | repeat=01 | strategy=3 | pct=100% passed. Saved panel to smoke_panel.png and mask to smoke_prediction.png. [Optuna Off] Using manual hyperparameters for strategy=3, percent=100% from /workspace/TransUNet_Setup/best_params_strat3.json. head_lr : 2.049e-04 encoder_lr : 0.000e+00 weight_decay : 0.001 dropout_p : 0.05 tmax : 4 entropy_lr : 3.000e-04 load_pretrained: grid-size from 14 to 8 -------------------------------------------------------------------------------- TransUNet Checkpoint Verification -------------------------------------------------------------------------------- [TransUNet] OK Loaded R50+ViT-B/16 ImageNet checkpoint [TransUNet] File : /workspace/model/vit_checkpoint/imagenet21k/R50+ViT-B_16.npz (439.9 MB) [TransUNet] NPZ arrays : 358 [TransUNet] PosEmbed shape : src (1, 197, 768) -> tgt (1, 64, 768) (interpolated) [TransUNet] PosEmbed updated : True [TransUNet] ResNet root conv updated: True [TransUNet] ViT block-0 query updated: True [TransUNet] img_size=128, patches.grid=(8, 8), n_skip=3, n_classes=1 -------------------------------------------------------------------------------- Strategy 2 Bootstrap OK | strategy3.smp_model -------------------------------------------------------------------------------- Checkpoint : /workspace/runs/TransUNet_Simplified_Phase1/repeated_holdout/stratified_holdout_v1/phase_001/pct_100/repeat_01/strategy_2/final/checkpoints/best.pt Checkpoint prefix : smp_model. Loaded tensors : 409 Strict load : passed -------------------------------------------------------------------------------- Model Parameter Summary | Strategy 3 Lite: SMP TransUNet (R50-ViT-B_16) + RL -------------------------------------------------------------------------------- Strategy : 3 Model : Strategy 3 Lite: SMP TransUNet (R50-ViT-B_16) + RL Dropout p : 0.0500 Total params : 107,733,138 Trainable params : 2,558,593 Frozen params : 105,174,545 BN layers : 9 GN layers : 58 channels_last : True AMP dtype : torch.bfloat16 torch.compile : True Backbone family : smp S3 variant : lite S3 bootstrap loaded : True S3 freeze requested : True S3 frozen now : True S3 encoder state : frozen S3 decoder state : frozen S3 seg head state : frozen encoder : 97,787,200 decoder : 7,387,200 segmentation_head : 145 sam : 0 policy_head : 959,873 value_head : 0 Epoch 1/120: 0%| | 0/17 [00:00 tgt (1, 64, 768) (interpolated) [TransUNet] PosEmbed updated : True [TransUNet] ResNet root conv updated: True [TransUNet] ViT block-0 query updated: True [TransUNet] img_size=128, patches.grid=(8, 8), n_skip=3, n_classes=1 -------------------------------------------------------------------------------- Strategy 2 Bootstrap OK | strategy3.smp_model -------------------------------------------------------------------------------- Checkpoint : /workspace/runs/TransUNet_Simplified_Phase1/repeated_holdout/stratified_holdout_v1/phase_001/pct_100/repeat_01/strategy_2/final/checkpoints/best.pt Checkpoint prefix : smp_model. Loaded tensors : 409 Strict load : passed [Strategy3 Compatibility] source=/workspace/runs/TransUNet_Simplified_Phase1/repeated_holdout/stratified_holdout_v1/phase_001/pct_100/repeat_01/strategy_3/final/checkpoints/best.pt mode=refinement legacy_policy_head=False refinement_adapter=True [Checkpoint Restore] path=/workspace/runs/TransUNet_Simplified_Phase1/repeated_holdout/stratified_holdout_v1/phase_001/pct_100/repeat_01/strategy_3/final/checkpoints/best.pt epoch=107 run_type=final backbone=smp Evaluating: 0%| | 0/3 [00:00 /workspace/runs/TransUNet_Simplified_Phase1/repeated_holdout/stratified_holdout_v1/phase_timing_summary.json (mean=789.87s, std=340.98s). [CUDA Cleanup] bundle release: allocated=0.02 GB, reserved=0.04 GB, peak=0.02 GB ================================================================================ FIXED PHASE EXECUTION COMPLETE ================================================================================ Experiment root : /workspace/runs/TransUNet_Simplified_Phase1/repeated_holdout/stratified_holdout_v1 Experiment DB : /workspace/runs/TransUNet_Simplified_Phase1/repeated_holdout/stratified_holdout_v1/experiment_state.sqlite3 Raw metrics export : /workspace/runs/TransUNet_Simplified_Phase1/repeated_holdout/stratified_holdout_v1/exports/raw_run_metrics.csv Aggregate export : /workspace/runs/TransUNet_Simplified_Phase1/repeated_holdout/stratified_holdout_v1/exports/aggregated_metrics_by_percent_strategy.csv