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add README
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- README.md +160 -0
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README.md
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| 1 |
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---
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license: mit
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---
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# Quakeflow_NC
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## Introduction
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This dataset is part of the data (1970-2020) from [NCEDC (Northern California Earthquake Data Center)](https://ncedc.org/index.html) and is organized as several HDF5 files. The dataset structure is shown below, and you can find more information about the format at [AI4EPS](https://ai4eps.github.io/homepage/ml4earth/seismic_event_format1/))
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Cite the NCEDC and PhaseNet:
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Zhu, W., & Beroza, G. C. (2018). PhaseNet: A Deep-Neural-Network-Based Seismic Arrival Time Picking Method. arXiv preprint arXiv:1803.03211.
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NCEDC (2014), Northern California Earthquake Data Center. UC Berkeley Seismological Laboratory. Dataset. doi:10.7932/NCEDC.
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Acknowledge the NCEDC:
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Waveform data, metadata, or data products for this study were accessed through the Northern California Earthquake Data Center (NCEDC), doi:10.7932/NCEDC.
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```
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Group: / len:16227
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|- Group: /nc71111584 len:2
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| |-* begin_time = 2020-01-02T07:01:19.620
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| 24 |
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| |-* depth_km = 3.69
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| |-* end_time = 2020-01-02T07:03:19.620
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| |-* event_id = nc71111584
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| |-* event_time = 2020-01-02T07:01:48.240
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| |-* event_time_index = 2862
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| |-* latitude = 37.6545
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| |-* longitude = -118.8798
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| |-* magnitude = -0.15
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| |-* magnitude_type = D
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| |-* num_stations = 2
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| |- Dataset: /nc71111584/NC.MCB..HH (shape:(3, 12000))
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| | |- (dtype=float32)
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| | | |-* azimuth = 233.0
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| | | |-* component = ['E' 'N' 'Z']
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| 38 |
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| | | |-* distance_km = 1.9
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| | | |-* dt_s = 0.01
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| 40 |
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| | | |-* elevation_m = 2391.0
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| | | |-* emergence_angle = 159.0
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| | | |-* event_id = ['nc71111584' 'nc71111584']
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| | | |-* latitude = 37.6444
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| | | |-* location =
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| | | |-* longitude = -118.8968
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| | | |-* network = NC
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| | | |-* phase_index = [3000 3101]
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| | | |-* phase_polarity = ['U' 'N']
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| 49 |
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| | | |-* phase_remark = ['IP' 'ES']
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| 50 |
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| | | |-* phase_score = [1 2]
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| 51 |
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| | | |-* phase_time = ['2020-01-02T07:01:49.620' '2020-01-02T07:01:50.630']
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| 52 |
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| | | |-* phase_type = ['P' 'S']
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| 53 |
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| | | |-* snr = [2.82143 3.055604 1.8412642]
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| | | |-* station = MCB
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| | | |-* unit = 1e-6m/s
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| |- Dataset: /nc71111584/NC.MCB..HN (shape:(3, 12000))
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| | |- (dtype=float32)
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| | | |-* azimuth = 233.0
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| | | |-* component = ['E' 'N' 'Z']
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| 60 |
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......
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```
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| 63 |
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## How to use
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| 64 |
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| 65 |
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### Requirements
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| 66 |
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- datasets
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- h5py
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- fsspec
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| 69 |
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- pytorch
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| 70 |
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| 71 |
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### Usage
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| 72 |
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Import the necessary packages:
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| 73 |
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```python
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import h5py
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import numpy as np
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import torch
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from datasets import load_dataset
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```
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We have 6 configurations for the dataset:
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- "station"
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- "event"
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- "station_train"
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- "event_train"
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- "station_test"
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- "event_test"
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"station" yields station-based samples one by one, while "event" yields event-based samples one by one. The configurations with no suffix are the full dataset, while the configurations with suffix "_train" and "_test" only have corresponding split of the full dataset. Train split contains data from 1970 to 2019, while test split contains data in 2020.
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The sample of `station` is a dictionary with the following keys:
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- `data`: the waveform with shape `(3, nt)`, the default time length is 8192
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- `begin_time`: the begin time of the waveform data
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- `end_time`: the end time of the waveform data
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- `phase_time`: the phase arrival time
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- `phase_index`: the time point index of the phase arrival time
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- `phase_type`: the phase type
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- `phase_polarity`: the phase polarity in ('U', 'D', 'N')
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- `event_time`: the event time
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- `event_time_index`: the time point index of the event time
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- `event_location`: the event location with shape `(3,)`, including latitude, longitude, depth
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- `station_location`: the station location with shape `(3,)`, including latitude, longitude and depth
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The sample of `event` is a dictionary with the following keys:
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- `data`: the waveform with shape `(n_station, 3, nt)`, the default time length is 8192
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- `begin_time`: the begin time of the waveform data
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- `end_time`: the end time of the waveform data
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- `phase_time`: the phase arrival time with shape `(n_station,)`
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- `phase_index`: the time point index of the phase arrival time with shape `(n_station,)`
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- `phase_type`: the phase type with shape `(n_station,)`
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- `phase_polarity`: the phase polarity in ('U', 'D', 'N') with shape `(n_station,)`
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- `event_time`: the event time
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- `event_time_index`: the time point index of the event time
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- `event_location`: the space-time coordinates of the event with shape `(n_staion, 3)`
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- `station_location`: the space coordinates of the station with shape `(n_station, 3)`, including latitude, longitude and depth
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The default configuration is `station_test`. You can specify the configuration by argument `name`. For example:
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```python
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# load dataset
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# ATTENTION: Streaming(Iterable Dataset) is difficult to support because of the feature of HDF5
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# So we recommend to directly load the dataset and convert it into iterable later
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# The dataset is very large, so you need to wait for some time at the first time
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# to load "station_test" with test split
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quakeflow_nc = load_dataset("AI4EPS/quakeflow_nc", split="test")
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# or
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quakeflow_nc = load_dataset("AI4EPS/quakeflow_nc", name="station_test", split="test")
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# to load "event" with train split
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quakeflow_nc = load_dataset("AI4EPS/quakeflow_nc", name="event", split="train")
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```
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#### Example loading the dataset
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```python
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quakeflow_nc = load_dataset("AI4EPS/quakeflow_nc", name="station_test", split="test")
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# print the first sample of the iterable dataset
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for example in quakeflow_nc:
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print("\nIterable test\n")
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print(example.keys())
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for key in example.keys():
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if key == "data":
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print(key, np.array(example[key]).shape)
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else:
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print(key, example[key])
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break
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| 146 |
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# %%
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| 147 |
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quakeflow_nc = quakeflow_nc.with_format("torch")
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dataloader = DataLoader(quakeflow_nc, batch_size=8, num_workers=0, collate_fn=lambda x: x)
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| 149 |
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for batch in dataloader:
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print("\nDataloader test\n")
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| 152 |
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print(f"Batch size: {len(batch)}")
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| 153 |
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print(batch[0].keys())
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| 154 |
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for key in batch[0].keys():
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if key == "data":
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print(key, np.array(batch[0][key]).shape)
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else:
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print(key, batch[0][key])
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break
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```
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