Update VenusMutHub dataset with new doi.csv file

doi.csv

@@ -0,0 +1,232 @@
+mutant_file_id,doi
+1A3G_kcatkm57_alpha-Ketoglutarate,10.1021/acscatal.9b01464
+1A6K_ee,doi.org/10.1002/anie.201608680
+1BXZ_ee,doi.org/10.1002/cbic.201700562
+1MLC_2_Kd-wtKd-mut,http://dx.doi.org/10.1038/nbt1336
+1NWW_ee,doi.org/10.1021/jacs.7b10278
+1XWW_activity,10.1371/journal.pone.0235133
+1XWW_kcatkm,10.1371/journal.pone.0235133
+1XWW_km,10.1371/journal.pone.0235133
+1Z42_ee_1,doi.org/10.1002/adsc.200900644
+1Z42_ee_2,doi.org/10.1002/adsc.200900644
+1Z42_ee_3,doi.org/10.1002/adsc.200900644
+2Q0Q_ee_1,doi.org/10.1021/acscatal.0c01767
+2Q0Q_ee_2,doi.org/10.1021/acscatal.0c01767
+2YLR_ee,doi.org/10.1021/ja5098034
+3FCR_activity-substrate-1,10.1021/acscatal.4c00987
+3FCR_activity-substrate-2,10.1021/acscatal.4c00987
+3FCR_ee,10.1021/acscatal.4c00987
+3WUY_ee,10.1002/anie.202012243
+4DF2_ee,10.1021/cs500429k
+4O98_kcat,10.1002/bit.26012
+4O98_kcatkm,10.1002/bit.26012
+4O98_km,10.1002/bit.26012
+4OVI_ee_2,doi.org/10.1021/ja5098034
+4OVI_ee_3,doi.org/10.1021/ja5098034
+4OVI_ee_4_substreate_1a,doi.org/10.1021/ja5098034
+4OVI_ee_4_substreate_4b,doi.org/10.1021/ja5098034
+4OVI_ee_4_substreate_4c,doi.org/10.1021/ja5098034
+4S2P_kcatkm,10.1038/s41929-024-01117-4
+5A71_ee,doi.org/10.1021/jacs.9b02709
+5A71_kcat,10.1038/s41467-019-11155-3
+5A71_kcatkm,10.1038/s41467-019-11155-3
+5A71_km,10.1038/s41467-019-11155-3
+5T6M_km,10.1021/jacs.8b03490
+5Z2X_ee,doi.org/10.1021/jacs.8b08640
+6CUK_turnover_rate,10.1038/s41467-024-50698-y
+6JXG_activity,10.1186/s13068-021-01973-3
+7EMG_ee,10.1039/d1cc04542c
+7LOO_activity,10.1021/acs.jafc.4c03715
+7YVR_activity,doi.org/10.1021/acscatal.0c05607
+7YVR_de,doi.org/10.1021/acscatal.0c05607
+8IOZ_activity,10.1016/j.isci.2024.109034
+A0A059TC02_activity,10.1105/tpc.114.127399
+A0A0H2V871_DGE_activity,10.1021/bi060950i
+A0A0H2V871_Ent_activity,10.1021/bi060950i
+A0A0I9QGZ2_ee_1,doi.org/10.1039/c4cc08436e
+A0A0I9QGZ2_ee_2,doi.org/10.1039/c4cc08436e
+A0A0I9QGZ2_kcat,10.1002/anie.201701169
+A0A0I9QGZ2_kcatkm,10.1002/anie.201701169
+A0A0I9QGZ2_km,10.1002/anie.201701169
+A0A0K8P6T7_activity,10.1002/cbic.201800097
+A0A0K8P6T7_TPA_activity,10.1002/cbic.201800097
+A0A0K8P6T7_yield,10.1002/cbic.201800097
+A0A0K8P8E7_activity,10.1038/s41467-019-09326-3
+A0A0P0ZBS7_activity,10.1007/s12033-015-9839-4
+A0A7I6N400_ee,10.1021/acsomega.0c03070
+A0MGZ7_substrate_VII_activity,10.1021/acschembio.6b00841
+A0MGZ7_substrate_VI_activity,10.1021/acschembio.6b00841
+A0MGZ7_substrate_V_activity,10.1021/acschembio.6b00841
+A2QAN3_kcat,?10.1111/febs.14083
+A2QAN3_kcatkm,?10.1111/febs.14083
+A2RJT9_DCIP_activity,10.1074/jbc.M303767200
+A2RJT9_oxygen_activity,10.1074/jbc.M303767200
+A4QAA6_activity,doi/10.1021/acs.jafc.3c09589
+A4XGA6_M5_Epimerization_activity,10.1016/j.ijbiomac.2019.11.015
+A4XGA6_M5_Isomerization_activity,10.1016/j.ijbiomac.2019.11.015
+AAD07447_1_activity_product_3-FL,10.1002/bit.25944
+AAD07447_1_activity_product_Lex,10.1002/bit.25944
+AAD07447_1_kcatkm_substrate_GDP,10.1002/bit.25944
+AAD07447_1_kcatkm_substrate_lactose,10.1002/bit.25944
+AAD07447_1_kcat_substrate_GDP,10.1002/bit.25944
+AAD07447_1_kcat_substrate_lactose,10.1002/bit.25944
+AAD07447_1_km_substrate_GDP,10.1002/bit.25944
+AAD07447_1_km_substrate_lactose,10.1002/bit.25944
+AB333782_activity,10.1016/j.enzmictec.2024.110481
+ABS64560_1_activity,10.1007/s00253-015-6527-z
+ACCO_ee,10.1038/s44160-024-00536-2
+ACY56506_1_km,10.1128/AEM.01817-16
+AGQ46835_1_kcat,10.1016/j.enzmictec.2015.12.012
+AGQ46835_1_kcatkm,10.1016/j.enzmictec.2015.12.012
+AGQ46835_1_km,10.1016/j.enzmictec.2015.12.012
+AHW42593_1_activity,10.1016/j.enzmictec.2018.03.001
+AHZ56660_1_kcat,10.1111/1751-7915.12168
+AHZ56660_1_km,10.1111/1751-7915.12168
+ALB07219_1_activity,10.1007/s00449-020-02393-7
+ASG2_exp,10.1002/biot.202400347
+BAA88830_1_activity,10.1186/s12934-020-01451-9
+BAA_activity,10.1021/acs.jafc.4c05070
+BsSDR10_R-R-R-2_de,10.1021/jacsau.4c00284
+BsSDR10_R-S-S-2_de,10.1021/jacsau.4c00284
+BsSDR10_S-R-R-2_de,10.1021/jacsau.4c00284
+BsSDR10_S-S-S-2_de,10.1021/jacsau.4c00284
+BsSDR10_S7_R-R-R-2_de,10.1021/jacsau.4c00284
+BsSDR10_S7_R-S-S-2_de,10.1021/jacsau.4c00284
+BsSDR10_S7_S-R-R-2_de,10.1021/jacsau.4c00284
+BsSDR10_S7_S-S-S-2_de,10.1021/jacsau.4c00284
+C6DAH4_activity,10.1002/cbic.201700609
+CCA64021_1_activity,10.1007/s12010-019-03170-3
+CQR83192_1_activity,10.1007/s10529-018-2607-3
+CQR83192_1_kcat,10.1007/s10529-018-2607-3
+D4Z2G1_activity,10.1021/bi026427v
+E8RUP5_activity,10.1021/jacs.6b10389
+EHK72968_1_ee,10.1016/j.bbrc.2015.11.038
+EIJ78397_1_kcatkm,10.1021/acssynbio.8b00481
+EU348855_E-value,10.3390/molecules29204864
+GAP38373_1_relative_kcat,10.1002/cbic.202300373
+I6XD65_NAM_activity,10.1111/j.1742-4658.2007.06241.x
+I6XD65_PZA_activity,10.1111/j.1742-4658.2007.06241.x
+KAL2709656_de,doi.org/10.1021/acscatal.0c05607
+KdAKR_activity,10.1002/biot.202300637
+KE07_kcat,10.1038/nature06879
+KE70_kcatkm,10.1038/nature06879
+KmAKR_variant_3_activity,10.1016/j.bioorg.2021.104712
+MN539024_1_km,10.1111/1751-7915.13812
+MT038422_1_activity_hydrolysis,10.1016/j.enzmictec.2020.109644
+MT038422_1_activity_transpeptidation,10.1016/j.enzmictec.2020.109644
+MT038422_1_kcat,10.1016/j.enzmictec.2020.109644
+MT038422_1_kcatkm,10.1016/j.enzmictec.2020.109644
+MT038422_1_km,10.1016/j.enzmictec.2020.109644
+myoglobin_ee,http://dx.doi.org/10.1016/j.chempr.2024.06.010
+nitrilase_ee,?10.1021/ja035742h
+O06543_activity,10.1074/jbc.M409704200
+O52063_activity,10.1371/journal.pone.0137700
+O54728_activity,10.1021/bi010237n
+O75355_ADPase_activity,10.1021/bi002711f
+O75355_ATPase_activity,10.1021/bi002711f
+O94220_activity,10.1016/j.fob.2013.10.009
+P00813_activity,10.1096/fj.12-212621
+P04517_exp,10.1016/j.jbiotec.2005.08.006
+P05030_activity,10.1002/j.1460-2075.1988.tb03010.x
+P05150_activity,10.1074/jbc.M300383200
+P06802_activity,10.1074/jbc.M007552200
+P08684_ee_1,doi.org/10.1002/cbic.201600546
+P08684_ee_2,doi.org/10.1002/cbic.201600546
+P0A2M9_kcatkm,10.1016/j.molcel.2007.11.011
+P0A2M9_vmax,10.1016/j.molcel.2007.11.011
+P0A873_vmax,10.1016/j.jmb.2003.09.011
+P0A8I5_kcat,10.1002/prot.20454
+P0ADG7_kcat,10.1021/bi9714161
+P11509_kcat,10.1080/15287394.2014.951757
+P11509_kcatkm,10.1080/15287394.2014.951757
+P11509_kd,10.1080/15287394.2014.951757
+P11509_km,10.1080/15287394.2014.951757
+P14779_ee,10.1002/cbic.201200244
+P14779_ee_2,10.1002/cbic.201200244
+P14779_ee_3,10.1002/cbic.201200244
+P15042_1_activity,10.1074/jbc.M111164200
+P15042_2_activity,10.1074/jbc.M413685200
+P22862_activity,10.1002/bit.27170
+P24058_vmax,10.1074/jbc.M107465200
+P25745_activity,10.1038/nature04896
+P27346_activity_aKG,10.1021/acscatal.2c04636
+P27346_activity_PBO,10.1021/acscatal.2c04636
+P27346_activity_PPO,10.1021/acscatal.2c04636
+P27346_activity_PTO,10.1021/acscatal.2c04636
+P27346_PBO_kcat,10.1021/acscatal.2c04636
+P27346_PBO_KcatKm,10.1021/acscatal.2c04636
+P27346_PBO_Km,10.1021/acscatal.2c04636
+P27346_PPO_kcat,10.1021/acscatal.2c04636
+P27346_PPO_kcatkm_csv,10.1021/acscatal.2c04636
+P27346_PPO_km,10.1021/acscatal.2c04636
+P29379_ee,10.1002/bit.26484
+P32738_kcat,10.1074/jbc.270.49.29111
+P33018_kcatkm,10.1074/jbc.M600996200
+P33018_vmax,10.1074/jbc.M600996200
+P36136_kcat,10.1074/jbc.M110.118315
+P36136_vmax,10.1074/jbc.M110.118315
+P46544_activity,10.1016/s0167-4838(98)00264-7
+P46849_activity,10.1016/j.str.2010.01.016
+P49768_1_activity,10.1038/nature14892
+P51697_activity,?10.1002/prot.10007
+P52061_kcat,10.1016/j.jmb.2007.10.012
+P56653_kcat,10.1021/bi0262303
+P58004_kcat,10.1038/ncomms10025
+P73574_activity,?10.1016/j.febslet.2015.09.001
+P73832_activity,10.1016/j.jmb.2009.07.001
+P77555_kcat,10.1371/journal.pone.0052066
+P77555_kcatkm,10.1371/journal.pone.0052066
+P78330_activity,10.1074/jbc.M204866200
+P80036_activity,10.1271/bbb.65.1542
+P95480_vmax,10.1002/anie.200802466
+P95867_activity,10.1021/jf073320b
+P9WHH9_DTNB_activity,10.1074/jbc.M507466200
+P9WHH9_LDH_activity,10.1074/jbc.M507466200
+P9WHH9_PDH_activity,10.1074/jbc.M507466200
+Q02353_N_deacetylase_activity,10.1074/jbc.274.4.1966
+Q02353_N_sulfotransferase_activity,10.1074/jbc.274.4.1966
+Q02890_activity,10.1074/jbc.M111383200
+Q03154_kcat,10.1074/jbc.M304233200
+Q06135_activity,10.1074/jbc.M807990200
+Q071N0_kcatkm,10.1074/jbc.M109.030957
+Q14RS0_activity,10.1016/j.enzmictec.2015.07.009
+Q16769_kcat,10.1073/pnas.0504184102
+Q16774_kcat,10.1074/jbc.RA119.009251
+Q2FHP2_activity,10.1038/s41467-019-13724-y
+Q2FV54_activity,10.1074/jbc.RA120.013108
+Q3YW59_activity,10.1038/nature13618
+Q44244_NSAR_kcat,10.1021/bi500573v
+Q44244_OSBS_kcat,10.1021/bi500573v
+Q47NX5_km,10.1128/AEM.01224-18
+Q4KAC6_kcat,10.1016/j.enzmictec.2019.01.002
+Q4KAC6_kcatkm,10.1016/j.enzmictec.2019.01.002
+Q4KAC6_km,10.1016/j.enzmictec.2019.01.002
+Q51559_activity,10.1111/febs.14954
+Q57261_activity,10.1016/j.abb.2009.07.023
+Q58431_activity,10.1021/bi0484769
+Q597B8_activity,10.1016/j.ijbiomac.2024.132084
+Q5F4D9_ee,10.1002/anie.201311091
+Q65EX3_activity,10.1073/pnas.1019480108
+Q6VAB4_kcatkm,10.1073/pnas.1902104116
+Q70PR7_activity,?10.1016/j.bmc.2004.02.029
+Q7SIG4_activity,10.1021/bi0500675
+Q86GC8_activity,10.1016/j.scitotenv.2024.173282
+Q86XE5_kcat,10.1371/journal.pone.0026021
+Q887Q3_activity,10.1074/jbc.M113.533158
+Q88LS1_activity,10.1128/mBio.01412-17
+Q8GCH2_kcat,?10.1074/jbc.M801227200
+Q8IYT2_activity,10.1038/ncomms4004
+Q8JFY9_activity,10.1074/jbc.M501160200
+Q8KLM3_activity,10.1074/jbc.M611912200
+Q8LPL7_activity,?10.1093/nar/gkz070
+QNC43959_1_kcatkm_substrate_R,10.1038/nature06879
+QNC43959_1_kcatkm_substrate_S,10.1038/nature06879
+QNC43959_1_kcat_substrate_R,10.1038/nature06879
+QNC43959_1_kcat_substrate_S,10.1038/nature06879
+QNC43959_1_ratio_of_kcatkm_R_over_S,10.1038/nature06879
+S5Y0Y3_residual_activity,10.1016/j.bbrc.2020.12.039
+S5Y0Y3_turn_over_frequency,10.1016/j.bbrc.2020.12.039
+Tr_Cel7B_activity,10.1021/ci500339v
+WLF46330_1_kcat_disulfide_bonds,10.1002/bit.28808
+WP_012492804_activity,doi.org/10.1128/AEM.02688-15
+WP_012492804_ee,doi.org/10.1128/AEM.02688-15