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spencer-gable-cook commited on
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Upload miracl_ace_script.sh

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  1. miracl_ace_script.sh +1 -1
miracl_ace_script.sh CHANGED
@@ -24,4 +24,4 @@ done
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  # Run job
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  module load apptainer
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- apptainer run --nv -B "${INPUT_DIR}:/input_dir" -B "${OUTPUT_DIR}:/output_dir" miracl_cho_fir_fix.sif miracl flow ace --single /input_dir --sa_output_folder /output_dir --sa_model_type unet --rca_orient_code ARI --sa_resolution 3.5 3.5 4.0 --ctn_down 10 --rca_voxel_size 25 --ctn_channame Signal --sa_batch_size 2
 
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  # Run job
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  module load apptainer
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+ apptainer run --nv -B "${INPUT_DIR}:/input_dir" -B "${OUTPUT_DIR}:/output_dir" miracl_ace_container.sif miracl flow ace --single /input_dir --sa_output_folder /output_dir --sa_model_type unet --rca_orient_code ARI --sa_resolution 3.5 3.5 4.0 --ctn_down 10 --rca_voxel_size 25 --ctn_channame Signal --sa_batch_size 2