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ims2trans18_fold1/wandb/run-20260711_153642-itz6huuj/files/output.log
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Processing Files (1 / 1) : 100%|██████████| 52.7MB / 52.7MB, 28.8MB/s
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ims2trans18_fold1/wandb/run-20260711_153642-itz6huuj/files/requirements.txt
ADDED
|
@@ -0,0 +1,124 @@
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| 1 |
+
six==1.17.0
|
| 2 |
+
nvidia-cutlass-dsl==4.6.0
|
| 3 |
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et_xmlfile==2.0.0
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| 4 |
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certifi==2026.4.22
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| 5 |
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nvidia-nccl-cu12==2.27.5
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| 6 |
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regex==2026.6.28
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| 7 |
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ml_dtypes==0.5.4
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| 8 |
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simpleitk==2.5.4
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| 9 |
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kiwisolver==1.5.0
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| 10 |
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idna==3.13
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| 11 |
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annotated-types==0.7.0
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| 12 |
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nvidia-cutlass-dsl-libs-cu12==4.6.0
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| 13 |
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cycler==0.12.1
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| 14 |
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ptflops==0.7.5
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| 15 |
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typing-inspection==0.4.2
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| 16 |
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ninja==1.13.0
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| 17 |
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nvidia-cufile-cu12==1.13.1.3
|
| 18 |
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nvidia-cuda-nvrtc-cu12==12.8.93
|
| 19 |
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cloudpickle==3.1.2
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| 20 |
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python-dateutil==2.9.0.post0
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| 21 |
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tokenizers==0.22.2
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| 22 |
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packaging==26.2
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| 23 |
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wcwidth==0.6.0
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| 24 |
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safetensors==0.7.0
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| 25 |
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torch_c_dlpack_ext==0.1.5
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| 26 |
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mdurl==0.1.2
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| 27 |
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click==8.3.3
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| 28 |
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Jinja2==3.1.6
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| 29 |
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dynamic_network_architectures==0.4.3
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| 30 |
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contourpy==1.3.3
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| 32 |
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nvidia-curand-cu12==10.3.9.90
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| 33 |
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PyYAML==6.0.3
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| 34 |
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GitPython==3.1.49
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| 35 |
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| 36 |
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nvidia-cusparselt-cu12==0.7.1
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| 37 |
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nvidia-cusparse-cu12==12.5.8.93
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| 38 |
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z3-solver==4.15.4.0
|
| 39 |
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nvidia-nvtx-cu12==12.8.90
|
| 40 |
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nvidia-nvjitlink-cu12==12.8.93
|
| 41 |
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nvidia-cufft-cu12==11.3.3.83
|
| 42 |
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httpcore==1.0.9
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| 43 |
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cuda-python==13.3.1
|
| 44 |
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MiMoSe==0.0.2
|
| 45 |
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nvidia-cublas-cu12==12.8.4.1
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| 46 |
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nodeocc==1.0.26
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| 47 |
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| 48 |
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| 49 |
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|
| 50 |
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thop==0.1.1-2209072238
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| 51 |
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| 53 |
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anyio==4.13.0
|
| 54 |
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nvidia-cudnn-cu12==9.10.2.21
|
| 55 |
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|
| 56 |
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nvidia-cuda-cupti-cu12==12.8.90
|
| 57 |
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nvidia-cuda-nvdisasm==13.3.73
|
| 58 |
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typer==0.25.0
|
| 59 |
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| 60 |
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causal-conv1d==1.6.2.post1
|
| 61 |
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requests==2.33.1
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| 62 |
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| 63 |
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filelock==3.29.0
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| 65 |
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httpx==0.28.1
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| 66 |
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nvidia-cusolver-cu12==11.7.3.90
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| 67 |
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markdown-it-py==4.0.0
|
| 68 |
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urllib3==2.6.3
|
| 69 |
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h11==0.16.0
|
| 70 |
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nvidia-nvshmem-cu12==3.3.20
|
| 71 |
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pyparsing==3.3.2
|
| 72 |
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annotated-doc==0.0.4
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| 73 |
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hf-xet==1.4.3
|
| 74 |
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cuda-pathfinder==1.5.6
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| 75 |
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platformdirs==4.9.6
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| 76 |
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MedPy==0.5.2
|
| 77 |
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einops==0.8.2
|
| 78 |
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wheel==0.47.0
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| 79 |
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tqdm==4.67.3
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| 80 |
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h5py==3.16.0
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| 81 |
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protobuf==6.33.6
|
| 82 |
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nvidia-cuda-runtime-cu12==12.8.90
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| 83 |
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fsspec==2026.4.0
|
| 84 |
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ttkbootstrap==1.20.2
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| 85 |
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nvidia-cutlass-dsl-libs-base==4.6.0
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| 86 |
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mpmath==1.3.0
|
| 87 |
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rich==15.0.0
|
| 88 |
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pillow==12.2.0
|
| 89 |
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cuda-bindings==13.3.1
|
| 90 |
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quack-kernels==0.6.0
|
| 91 |
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prompt_toolkit==3.0.52
|
| 92 |
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joblib==1.5.3
|
| 93 |
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pydantic==2.13.3
|
| 94 |
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nvidia-cutlass-dsl-libs-core==4.6.0
|
| 95 |
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openpyxl==3.1.5
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| 96 |
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huggingface_hub==1.13.0
|
| 97 |
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torchvision==0.24.1
|
| 98 |
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sentry-sdk==2.58.0
|
| 99 |
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cuda-core==1.0.1
|
| 100 |
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apache-tvm-ffi==0.1.9
|
| 101 |
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wandb==0.26.1
|
| 102 |
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fonttools==4.62.1
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| 103 |
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Pygments==2.20.0
|
| 104 |
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triton==3.5.1
|
| 105 |
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setuptools==82.0.1
|
| 106 |
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networkx==3.6.1
|
| 107 |
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matplotlib==3.10.9
|
| 108 |
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numpy==2.4.4
|
| 109 |
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scikit-learn==1.8.0
|
| 110 |
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scipy==1.17.1
|
| 111 |
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pandas==3.0.2
|
| 112 |
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sympy==1.14.0
|
| 113 |
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transformers==5.12.1
|
| 114 |
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tilelang==0.1.8
|
| 115 |
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torch==2.9.1
|
| 116 |
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mypy_extensions==1.1.0
|
| 117 |
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iniconfig==2.3.0
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| 118 |
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| 119 |
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ruff==0.15.12
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| 120 |
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librt==0.9.0
|
| 121 |
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|
| 122 |
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|
| 123 |
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mypy==1.20.2
|
| 124 |
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MiMoSe==0.0.2
|
ims2trans18_fold1/wandb/run-20260711_153642-itz6huuj/files/wandb-metadata.json
ADDED
|
@@ -0,0 +1,107 @@
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| 1 |
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{
|
| 2 |
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"os": "Linux-5.15.0-181-generic-x86_64-with-glibc2.35",
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| 3 |
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"python": "CPython 3.12.13",
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| 4 |
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"startedAt": "2026-07-11T15:36:42.479725Z",
|
| 5 |
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"args": [
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| 6 |
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"train",
|
| 7 |
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"--config",
|
| 8 |
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"ims2trans_18.yaml",
|
| 9 |
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"--fold",
|
| 10 |
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"1",
|
| 11 |
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"--run-suffix",
|
| 12 |
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"fold1",
|
| 13 |
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"--seed",
|
| 14 |
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"0",
|
| 15 |
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"--try-resume"
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| 16 |
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],
|
| 17 |
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"program": "/homes/ocarpentiero/MiMoSe/.venv/bin/mimose",
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| 18 |
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"codePath": ".venv/bin/mimose",
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| 19 |
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"codePathLocal": ".venv/bin/mimose",
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| 20 |
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"git": {
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| 21 |
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"remote": "https://github.com/AImageLab-zip/IM-Fuse.git",
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| 22 |
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"commit": "e46b66f7f11297b665f08beb875e1f5b08a6e6a1"
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| 23 |
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},
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| 24 |
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"root": "/work/phd_mimose/runs/ims2trans18_fold1",
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| 25 |
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"host": "bimbogigi",
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| 26 |
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"executable": "/homes/ocarpentiero/MiMoSe/.venv/bin/python3",
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| 27 |
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"cpu_count": 40,
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| 28 |
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{
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| 42 |
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"name": "NVIDIA L40S",
|
| 43 |
+
"memoryTotal": "48305799168",
|
| 44 |
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"cudaCores": 18176,
|
| 45 |
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"architecture": "Ada",
|
| 46 |
+
"uuid": "GPU-9b60e8f2-a135-853b-3d04-99936fabf224"
|
| 47 |
+
}
|
| 48 |
+
],
|
| 49 |
+
"cudaVersion": "13.2",
|
| 50 |
+
"slurm": {
|
| 51 |
+
"cluster_name": "aimagelab",
|
| 52 |
+
"conf": "/etc/slurm/slurm.conf",
|
| 53 |
+
"cpus_on_node": "8",
|
| 54 |
+
"cpus_per_task": "8",
|
| 55 |
+
"distribution": "cyclic",
|
| 56 |
+
"gpus_on_node": "1",
|
| 57 |
+
"gtids": "0",
|
| 58 |
+
"job_account": "phd_mimose",
|
| 59 |
+
"job_cpus_per_node": "8",
|
| 60 |
+
"job_dependency": "singleton",
|
| 61 |
+
"job_end_time": "1783870578",
|
| 62 |
+
"job_gid": "502",
|
| 63 |
+
"job_gpus": "0",
|
| 64 |
+
"job_id": "63795",
|
| 65 |
+
"job_name": "IMS2TRANS18_FOLD_1",
|
| 66 |
+
"job_nodelist": "bimbogigi",
|
| 67 |
+
"job_num_nodes": "1",
|
| 68 |
+
"job_partition": "boost_usr_prod",
|
| 69 |
+
"job_qos": "normal",
|
| 70 |
+
"job_start_time": "1783784178",
|
| 71 |
+
"job_uid": "92375",
|
| 72 |
+
"job_user": "ocarpentiero",
|
| 73 |
+
"jobid": "63795",
|
| 74 |
+
"launch_node_ipaddr": "155.185.48.224",
|
| 75 |
+
"localid": "0",
|
| 76 |
+
"mem_per_node": "102400",
|
| 77 |
+
"nnodes": "1",
|
| 78 |
+
"nodeid": "0",
|
| 79 |
+
"nodelist": "bimbogigi",
|
| 80 |
+
"nprocs": "1",
|
| 81 |
+
"ntasks": "1",
|
| 82 |
+
"oom_kill_step": "0",
|
| 83 |
+
"prio_process": "0",
|
| 84 |
+
"procid": "0",
|
| 85 |
+
"pty_port": "35549",
|
| 86 |
+
"pty_win_col": "100",
|
| 87 |
+
"pty_win_row": "20",
|
| 88 |
+
"srun_comm_host": "155.185.48.224",
|
| 89 |
+
"srun_comm_port": "37361",
|
| 90 |
+
"step_gpus": "2",
|
| 91 |
+
"step_id": "0",
|
| 92 |
+
"step_launcher_port": "37361",
|
| 93 |
+
"step_nodelist": "dracula",
|
| 94 |
+
"step_num_nodes": "1",
|
| 95 |
+
"step_num_tasks": "1",
|
| 96 |
+
"step_tasks_per_node": "1",
|
| 97 |
+
"stepid": "0",
|
| 98 |
+
"submit_dir": "/homes/ocarpentiero/MiMoSe",
|
| 99 |
+
"submit_host": "dracula",
|
| 100 |
+
"task_pid": "2446669",
|
| 101 |
+
"tasks_per_node": "1",
|
| 102 |
+
"topology_addr": "bimbogigi",
|
| 103 |
+
"topology_addr_pattern": "node",
|
| 104 |
+
"tres_per_task": "cpu=8"
|
| 105 |
+
},
|
| 106 |
+
"writerId": "ccl7j2joerailrcphe3obiktevx9zx6r"
|
| 107 |
+
}
|
lckd23_fold1/wandb/debug-internal.log
ADDED
|
@@ -0,0 +1,11 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{"time":"2026-07-19T13:59:56.679400713+02:00","level":"INFO","msg":"wandb-core"}
|
| 2 |
+
{"time":"2026-07-19T13:59:56.679422828+02:00","level":"INFO","msg":"stream: starting","core version":"0.26.1"}
|
| 3 |
+
{"time":"2026-07-19T13:59:57.531976539+02:00","level":"WARN","msg":"featurechecker: GraphQL client is nil, skipping feature loading"}
|
| 4 |
+
{"time":"2026-07-19T13:59:57.532005738+02:00","level":"WARN","msg":"featurechecker: GraphQL client is nil, skipping feature loading"}
|
| 5 |
+
{"time":"2026-07-19T13:59:57.532058402+02:00","level":"INFO","msg":"stream: created new stream","id":"26cax8fm"}
|
| 6 |
+
{"time":"2026-07-19T13:59:57.532120911+02:00","level":"INFO","msg":"handler: started"}
|
| 7 |
+
{"time":"2026-07-19T13:59:57.535901755+02:00","level":"INFO","msg":"stream: started"}
|
| 8 |
+
{"time":"2026-07-19T13:59:57.535995757+02:00","level":"INFO","msg":"sender: started"}
|
| 9 |
+
{"time":"2026-07-19T13:59:57.535944449+02:00","level":"INFO","msg":"writer: started","stream_id":"26cax8fm"}
|
| 10 |
+
{"time":"2026-07-19T13:59:57.638543372+02:00","level":"WARN","msg":"featurechecker: GraphQL client is nil, skipping feature loading"}
|
| 11 |
+
{"time":"2026-07-19T13:59:57.638578146+02:00","level":"WARN","msg":"runupserter: server does not expand metric globs but the x_server_side_expand_glob_metrics setting is set; ignoring"}
|
lckd23_fold1/wandb/debug.log
ADDED
|
@@ -0,0 +1,19 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
2026-07-19 13:59:52,675 INFO MainThread:1593257 [wandb_setup.py:_flush():81] Current SDK version is 0.26.1
|
| 2 |
+
2026-07-19 13:59:52,676 INFO MainThread:1593257 [wandb_setup.py:_flush():81] Configure stats pid to 1593257
|
| 3 |
+
2026-07-19 13:59:52,676 INFO MainThread:1593257 [wandb_setup.py:_flush():81] Loading settings from environment variables
|
| 4 |
+
2026-07-19 13:59:52,678 INFO MainThread:1593257 [wandb_init.py:setup_run_log_directory():723] Logging user logs to /work/phd_mimose/runs/lckd23_fold1/wandb/offline-run-20260719_135952-26cax8fm/logs/debug.log
|
| 5 |
+
2026-07-19 13:59:52,680 INFO MainThread:1593257 [wandb_init.py:setup_run_log_directory():724] Logging internal logs to /work/phd_mimose/runs/lckd23_fold1/wandb/offline-run-20260719_135952-26cax8fm/logs/debug-internal.log
|
| 6 |
+
2026-07-19 13:59:52,680 INFO MainThread:1593257 [wandb_init.py:init():850] calling init triggers
|
| 7 |
+
2026-07-19 13:59:52,680 INFO MainThread:1593257 [wandb_init.py:init():855] wandb.init called with sweep_config: {}
|
| 8 |
+
config: {'input_dir': '/work/phd_mimose/lckd-preprocessed', 'output_dir': '/work/phd_mimose/runs/lckd23_fold1', 'num_epochs': 980, 'validation_every': 10, 'batch_size': 2, 'num_workers': 8, 'fp16': False, 'compile': False, 'seed': 0, 'custom_trainer_kwargs': {'iter_per_epoch': None, 'patch_size': 128, 'debug': False, 'transform_kind': 'imfuse', 'train_masking_mode': 'random', 'val_masking_mode': 'validation', 'warmup_fraction': 0.41, 'split_file': '/homes/ecandeloro/MiMoSe/src/mimose/data/splits/splits_5fold.json', 'fold': 1}, 'model_class': 'LCKD', 'model_kwargs': {'num_cls': 4}, 'optimizer_class': 'SGD', 'optimizer': {'lr': 0.01, 'weight_decay': 0.0005, 'betas': None, 'momentum': 0.99, 'eps': None}, 'loss_class': 'LCKDLoss', 'loss_kwargs': {'num_classes': None, 'kd_weight': 0.1, 'eps': 0.001, 'log_clamp_min': 0.005}, 'scheduler_class': 'PolynomialLR', 'scheduler_kwargs': {'total_iters': 980, 'power': 0.9}, 'dataset_type': <DatasetType.BRATS23: 'brats23'>, 'iter_per_epoch': None, 'patch_size': 128, 'debug': False, 'train_masking_mode': <MaskingMode.RANDOM: 'random'>, 'val_masking_mode': <MaskingMode.VALIDATION: 'validation'>, 'warmup_fraction': 0.41, 'warmup_epochs': 402, 'split_file': '/homes/ecandeloro/MiMoSe/src/mimose/data/splits/splits_5fold.json', '_wandb': {}}
|
| 9 |
+
2026-07-19 13:59:52,680 INFO MainThread:1593257 [wandb_init.py:init():898] starting backend
|
| 10 |
+
2026-07-19 13:59:56,560 INFO MainThread:1593257 [wandb_init.py:init():913] sending inform_init request
|
| 11 |
+
2026-07-19 13:59:57,537 INFO MainThread:1593257 [wandb_init.py:init():918] backend started and connected
|
| 12 |
+
2026-07-19 13:59:57,540 INFO MainThread:1593257 [wandb_init.py:init():988] updated telemetry
|
| 13 |
+
2026-07-19 13:59:57,631 INFO MainThread:1593257 [wandb_init.py:init():1011] communicating run to backend with 90.0 second timeout
|
| 14 |
+
2026-07-19 13:59:57,642 INFO MainThread:1593257 [wandb_init.py:init():1056] starting run threads in backend
|
| 15 |
+
2026-07-19 13:59:58,576 INFO MainThread:1593257 [wandb_run.py:_console_start():2554] atexit reg
|
| 16 |
+
2026-07-19 13:59:58,576 INFO MainThread:1593257 [wandb_run.py:_redirect():2403] redirect: wrap_raw
|
| 17 |
+
2026-07-19 13:59:58,576 INFO MainThread:1593257 [wandb_run.py:_redirect():2472] Wrapping output streams.
|
| 18 |
+
2026-07-19 13:59:58,576 INFO MainThread:1593257 [wandb_run.py:_redirect():2495] Redirects installed.
|
| 19 |
+
2026-07-19 13:59:58,603 INFO MainThread:1593257 [wandb_init.py:init():1094] run started, returning control to user process
|
lckd23_fold1/wandb/offline-run-20260719_135952-26cax8fm/files/requirements.txt
ADDED
|
@@ -0,0 +1,116 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
hf-xet==1.4.3
|
| 2 |
+
prompt_toolkit==3.0.52
|
| 3 |
+
smmap==5.0.3
|
| 4 |
+
safetensors==0.7.0
|
| 5 |
+
pyparsing==3.3.2
|
| 6 |
+
torchvision==0.24.1
|
| 7 |
+
nvidia-cuda-nvrtc-cu12==12.8.93
|
| 8 |
+
httpcore==1.0.9
|
| 9 |
+
ninja==1.13.0
|
| 10 |
+
certifi==2026.4.22
|
| 11 |
+
cycler==0.12.1
|
| 12 |
+
setuptools==82.0.1
|
| 13 |
+
urllib3==2.6.3
|
| 14 |
+
torch_c_dlpack_ext==0.1.5
|
| 15 |
+
networkx==3.6.1
|
| 16 |
+
gitdb==4.0.12
|
| 17 |
+
cuda-bindings==13.3.1
|
| 18 |
+
protobuf==6.33.6
|
| 19 |
+
apache-tvm-ffi==0.1.9
|
| 20 |
+
charset-normalizer==3.4.7
|
| 21 |
+
sympy==1.14.0
|
| 22 |
+
Pygments==2.20.0
|
| 23 |
+
thop==0.1.1-2209072238
|
| 24 |
+
fonttools==4.62.1
|
| 25 |
+
filelock==3.29.0
|
| 26 |
+
nvidia-cuda-cupti-cu12==12.8.90
|
| 27 |
+
nvidia-cusparselt-cu12==0.7.1
|
| 28 |
+
typer==0.25.0
|
| 29 |
+
annotated-types==0.7.0
|
| 30 |
+
mamba-ssm==2.3.2.post1
|
| 31 |
+
timm==1.0.22
|
| 32 |
+
scikit-learn==1.8.0
|
| 33 |
+
nvidia-cutlass-dsl==4.6.0
|
| 34 |
+
wheel==0.47.0
|
| 35 |
+
cuda-pathfinder==1.5.6
|
| 36 |
+
nvidia-curand-cu12==10.3.9.90
|
| 37 |
+
cuda-python==13.3.1
|
| 38 |
+
anyio==4.13.0
|
| 39 |
+
packaging==26.2
|
| 40 |
+
nvidia-cuda-runtime-cu12==12.8.90
|
| 41 |
+
MarkupSafe==3.0.3
|
| 42 |
+
PyYAML==6.0.3
|
| 43 |
+
nvidia-cutlass-dsl-libs-base==4.6.0
|
| 44 |
+
torch==2.9.1
|
| 45 |
+
tilelang==0.1.8
|
| 46 |
+
nvidia-nvjitlink-cu12==12.8.93
|
| 47 |
+
ttkbootstrap==1.20.2
|
| 48 |
+
six==1.17.0
|
| 49 |
+
annotated-doc==0.0.4
|
| 50 |
+
pydantic_core==2.46.3
|
| 51 |
+
typing_extensions==4.15.0
|
| 52 |
+
Jinja2==3.1.6
|
| 53 |
+
nvidia-cublas-cu12==12.8.4.1
|
| 54 |
+
mdurl==0.1.2
|
| 55 |
+
et_xmlfile==2.0.0
|
| 56 |
+
nvidia-nccl-cu12==2.27.5
|
| 57 |
+
ml_dtypes==0.5.4
|
| 58 |
+
wcwidth==0.6.0
|
| 59 |
+
click==8.3.3
|
| 60 |
+
z3-solver==4.15.4.0
|
| 61 |
+
shellingham==1.5.4
|
| 62 |
+
dynamic_network_architectures==0.4.3
|
| 63 |
+
pillow==12.2.0
|
| 64 |
+
nvidia-cutlass-dsl-libs-cu12==4.6.0
|
| 65 |
+
markdown-it-py==4.0.0
|
| 66 |
+
nvidia-nvtx-cu12==12.8.90
|
| 67 |
+
causal-conv1d==1.6.2.post1
|
| 68 |
+
pydantic==2.13.3
|
| 69 |
+
h11==0.16.0
|
| 70 |
+
nvidia-cudnn-cu12==9.10.2.21
|
| 71 |
+
nvidia-cufft-cu12==11.3.3.83
|
| 72 |
+
requests==2.33.1
|
| 73 |
+
rich==15.0.0
|
| 74 |
+
psutil==7.2.2
|
| 75 |
+
nvidia-cusparse-cu12==12.5.8.93
|
| 76 |
+
typing-inspection==0.4.2
|
| 77 |
+
transformers==5.12.1
|
| 78 |
+
nodeocc==1.0.26
|
| 79 |
+
numpy==2.4.4
|
| 80 |
+
nvidia-cufile-cu12==1.13.1.3
|
| 81 |
+
cloudpickle==3.1.2
|
| 82 |
+
pandas==3.0.2
|
| 83 |
+
scipy==1.17.1
|
| 84 |
+
tqdm==4.67.3
|
| 85 |
+
platformdirs==4.9.6
|
| 86 |
+
nvidia-cutlass-dsl-libs-core==4.6.0
|
| 87 |
+
joblib==1.5.3
|
| 88 |
+
quack-kernels==0.6.0
|
| 89 |
+
regex==2026.6.28
|
| 90 |
+
kiwisolver==1.5.0
|
| 91 |
+
python-dateutil==2.9.0.post0
|
| 92 |
+
tokenizers==0.22.2
|
| 93 |
+
einops==0.8.2
|
| 94 |
+
contourpy==1.3.3
|
| 95 |
+
MiMoSe==0.0.2
|
| 96 |
+
triton==3.5.1
|
| 97 |
+
ptflops==0.7.5
|
| 98 |
+
mpmath==1.3.0
|
| 99 |
+
openpyxl==3.1.5
|
| 100 |
+
GitPython==3.1.49
|
| 101 |
+
idna==3.13
|
| 102 |
+
fsspec==2026.4.0
|
| 103 |
+
MedPy==0.5.2
|
| 104 |
+
nvidia-cuda-nvdisasm==13.3.73
|
| 105 |
+
httpx==0.28.1
|
| 106 |
+
sentry-sdk==2.58.0
|
| 107 |
+
cuda-core==1.0.1
|
| 108 |
+
threadpoolctl==3.6.0
|
| 109 |
+
h5py==3.16.0
|
| 110 |
+
nvidia-nvshmem-cu12==3.3.20
|
| 111 |
+
wandb==0.26.1
|
| 112 |
+
huggingface_hub==1.13.0
|
| 113 |
+
nvidia-cusolver-cu12==11.7.3.90
|
| 114 |
+
matplotlib==3.10.9
|
| 115 |
+
simpleitk==2.5.4
|
| 116 |
+
MiMoSe==0.0.2
|
lckd23_fold1/wandb/offline-run-20260719_135952-26cax8fm/logs/debug-core.log
ADDED
|
@@ -0,0 +1,13 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{"time":"2026-07-19T13:59:56.375865217+02:00","level":"INFO","msg":"main: starting server","port-filename":"/tmp/tmp36skca7s/port-2316297.txt","pid":2316297,"detached":false,"idle-timeout":600000000000,"log-level":0,"disable-analytics":false,"shutdown-on-parent-exit":false,"enable-dcgm-profiling":false}
|
| 2 |
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{"time":"2026-07-19T13:59:56.380934594+02:00","level":"INFO","msg":"main: starting server","port-filename":"/tmp/tmprlww5wx3/port-2316295.txt","pid":2316295,"detached":false,"idle-timeout":600000000000,"log-level":0,"disable-analytics":false,"shutdown-on-parent-exit":false,"enable-dcgm-profiling":false}
|
| 3 |
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{"time":"2026-07-19T13:59:56.387316045+02:00","level":"INFO","msg":"server: accepting connections","addr":{"Name":"/tmp/wandb-2316297-2316495-1116733518/socket","Net":"unix"}}
|
| 4 |
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{"time":"2026-07-19T13:59:56.387426716+02:00","level":"INFO","msg":"server: will exit if parent process dies","ppid":2316297}
|
| 5 |
+
{"time":"2026-07-19T13:59:56.387320218+02:00","level":"INFO","msg":"server: accepting connections","addr":{"Name":"/tmp/wandb-2316295-2316496-1039211372/socket","Net":"unix"}}
|
| 6 |
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{"time":"2026-07-19T13:59:56.387516556+02:00","level":"INFO","msg":"server: will exit if parent process dies","ppid":2316295}
|
| 7 |
+
{"time":"2026-07-19T13:59:56.568506589+02:00","level":"INFO","msg":"connection: ManageConnectionData: new connection created","id":"1(@)"}
|
| 8 |
+
{"time":"2026-07-19T13:59:56.570708559+02:00","level":"INFO","msg":"connection: ManageConnectionData: new connection created","id":"1(@)"}
|
| 9 |
+
{"time":"2026-07-19T13:59:56.673324187+02:00","level":"INFO","msg":"handleInformInit: received","streamId":"d21xf80r","id":"1(@)"}
|
| 10 |
+
{"time":"2026-07-19T13:59:56.674821923+02:00","level":"INFO","msg":"handleInformInit: received","streamId":"wxadj93b","id":"1(@)"}
|
| 11 |
+
{"time":"2026-07-19T13:59:57.553590972+02:00","level":"INFO","msg":"handleInformInit: stream started","streamId":"wxadj93b","id":"1(@)"}
|
| 12 |
+
{"time":"2026-07-19T13:59:57.554592098+02:00","level":"INFO","msg":"handleInformInit: stream started","streamId":"d21xf80r","id":"1(@)"}
|
| 13 |
+
{"time":"2026-07-19T13:59:57.677380968+02:00","level":"INFO","msg":"connection: cancelling request","id":"1(@)","requestId":"t3osln4ovdqx"}
|
lckd23_fold1/wandb/offline-run-20260719_135952-26cax8fm/logs/debug-internal.log
ADDED
|
@@ -0,0 +1,11 @@
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| 1 |
+
{"time":"2026-07-19T13:59:56.679400713+02:00","level":"INFO","msg":"wandb-core"}
|
| 2 |
+
{"time":"2026-07-19T13:59:56.679422828+02:00","level":"INFO","msg":"stream: starting","core version":"0.26.1"}
|
| 3 |
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{"time":"2026-07-19T13:59:57.531976539+02:00","level":"WARN","msg":"featurechecker: GraphQL client is nil, skipping feature loading"}
|
| 4 |
+
{"time":"2026-07-19T13:59:57.532005738+02:00","level":"WARN","msg":"featurechecker: GraphQL client is nil, skipping feature loading"}
|
| 5 |
+
{"time":"2026-07-19T13:59:57.532058402+02:00","level":"INFO","msg":"stream: created new stream","id":"26cax8fm"}
|
| 6 |
+
{"time":"2026-07-19T13:59:57.532120911+02:00","level":"INFO","msg":"handler: started"}
|
| 7 |
+
{"time":"2026-07-19T13:59:57.535901755+02:00","level":"INFO","msg":"stream: started"}
|
| 8 |
+
{"time":"2026-07-19T13:59:57.535995757+02:00","level":"INFO","msg":"sender: started"}
|
| 9 |
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{"time":"2026-07-19T13:59:57.535944449+02:00","level":"INFO","msg":"writer: started","stream_id":"26cax8fm"}
|
| 10 |
+
{"time":"2026-07-19T13:59:57.638543372+02:00","level":"WARN","msg":"featurechecker: GraphQL client is nil, skipping feature loading"}
|
| 11 |
+
{"time":"2026-07-19T13:59:57.638578146+02:00","level":"WARN","msg":"runupserter: server does not expand metric globs but the x_server_side_expand_glob_metrics setting is set; ignoring"}
|
lckd23_fold1/wandb/offline-run-20260719_135952-26cax8fm/logs/debug.log
ADDED
|
@@ -0,0 +1,19 @@
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| 1 |
+
2026-07-19 13:59:52,675 INFO MainThread:1593257 [wandb_setup.py:_flush():81] Current SDK version is 0.26.1
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| 2 |
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2026-07-19 13:59:52,676 INFO MainThread:1593257 [wandb_setup.py:_flush():81] Configure stats pid to 1593257
|
| 3 |
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2026-07-19 13:59:52,676 INFO MainThread:1593257 [wandb_setup.py:_flush():81] Loading settings from environment variables
|
| 4 |
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2026-07-19 13:59:52,678 INFO MainThread:1593257 [wandb_init.py:setup_run_log_directory():723] Logging user logs to /work/phd_mimose/runs/lckd23_fold1/wandb/offline-run-20260719_135952-26cax8fm/logs/debug.log
|
| 5 |
+
2026-07-19 13:59:52,680 INFO MainThread:1593257 [wandb_init.py:setup_run_log_directory():724] Logging internal logs to /work/phd_mimose/runs/lckd23_fold1/wandb/offline-run-20260719_135952-26cax8fm/logs/debug-internal.log
|
| 6 |
+
2026-07-19 13:59:52,680 INFO MainThread:1593257 [wandb_init.py:init():850] calling init triggers
|
| 7 |
+
2026-07-19 13:59:52,680 INFO MainThread:1593257 [wandb_init.py:init():855] wandb.init called with sweep_config: {}
|
| 8 |
+
config: {'input_dir': '/work/phd_mimose/lckd-preprocessed', 'output_dir': '/work/phd_mimose/runs/lckd23_fold1', 'num_epochs': 980, 'validation_every': 10, 'batch_size': 2, 'num_workers': 8, 'fp16': False, 'compile': False, 'seed': 0, 'custom_trainer_kwargs': {'iter_per_epoch': None, 'patch_size': 128, 'debug': False, 'transform_kind': 'imfuse', 'train_masking_mode': 'random', 'val_masking_mode': 'validation', 'warmup_fraction': 0.41, 'split_file': '/homes/ecandeloro/MiMoSe/src/mimose/data/splits/splits_5fold.json', 'fold': 1}, 'model_class': 'LCKD', 'model_kwargs': {'num_cls': 4}, 'optimizer_class': 'SGD', 'optimizer': {'lr': 0.01, 'weight_decay': 0.0005, 'betas': None, 'momentum': 0.99, 'eps': None}, 'loss_class': 'LCKDLoss', 'loss_kwargs': {'num_classes': None, 'kd_weight': 0.1, 'eps': 0.001, 'log_clamp_min': 0.005}, 'scheduler_class': 'PolynomialLR', 'scheduler_kwargs': {'total_iters': 980, 'power': 0.9}, 'dataset_type': <DatasetType.BRATS23: 'brats23'>, 'iter_per_epoch': None, 'patch_size': 128, 'debug': False, 'train_masking_mode': <MaskingMode.RANDOM: 'random'>, 'val_masking_mode': <MaskingMode.VALIDATION: 'validation'>, 'warmup_fraction': 0.41, 'warmup_epochs': 402, 'split_file': '/homes/ecandeloro/MiMoSe/src/mimose/data/splits/splits_5fold.json', '_wandb': {}}
|
| 9 |
+
2026-07-19 13:59:52,680 INFO MainThread:1593257 [wandb_init.py:init():898] starting backend
|
| 10 |
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2026-07-19 13:59:56,560 INFO MainThread:1593257 [wandb_init.py:init():913] sending inform_init request
|
| 11 |
+
2026-07-19 13:59:57,537 INFO MainThread:1593257 [wandb_init.py:init():918] backend started and connected
|
| 12 |
+
2026-07-19 13:59:57,540 INFO MainThread:1593257 [wandb_init.py:init():988] updated telemetry
|
| 13 |
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2026-07-19 13:59:57,631 INFO MainThread:1593257 [wandb_init.py:init():1011] communicating run to backend with 90.0 second timeout
|
| 14 |
+
2026-07-19 13:59:57,642 INFO MainThread:1593257 [wandb_init.py:init():1056] starting run threads in backend
|
| 15 |
+
2026-07-19 13:59:58,576 INFO MainThread:1593257 [wandb_run.py:_console_start():2554] atexit reg
|
| 16 |
+
2026-07-19 13:59:58,576 INFO MainThread:1593257 [wandb_run.py:_redirect():2403] redirect: wrap_raw
|
| 17 |
+
2026-07-19 13:59:58,576 INFO MainThread:1593257 [wandb_run.py:_redirect():2472] Wrapping output streams.
|
| 18 |
+
2026-07-19 13:59:58,576 INFO MainThread:1593257 [wandb_run.py:_redirect():2495] Redirects installed.
|
| 19 |
+
2026-07-19 13:59:58,603 INFO MainThread:1593257 [wandb_init.py:init():1094] run started, returning control to user process
|
m3ae18_fold3/huggingface/m3ae18_fold3/config.json
ADDED
|
@@ -0,0 +1,7 @@
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|
| 1 |
+
{
|
| 2 |
+
"mimose_model_name": "M3AE",
|
| 3 |
+
"model_class": "M3AE",
|
| 4 |
+
"model_kwargs": {
|
| 5 |
+
"num_cls": 4
|
| 6 |
+
}
|
| 7 |
+
}
|
m3ae18_fold3/wandb/debug-internal.log
ADDED
|
The diff for this file is too large to render.
See raw diff
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m3ae18_fold3/wandb/debug.log
ADDED
|
@@ -0,0 +1,23 @@
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| 1 |
+
2026-07-16 08:50:56,393 INFO MainThread:1534426 [wandb_setup.py:_flush():81] Current SDK version is 0.26.1
|
| 2 |
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2026-07-16 08:50:56,393 INFO MainThread:1534426 [wandb_setup.py:_flush():81] Configure stats pid to 1534426
|
| 3 |
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2026-07-16 08:50:56,393 INFO MainThread:1534426 [wandb_setup.py:_flush():81] Loading settings from environment variables
|
| 4 |
+
2026-07-16 08:50:56,394 INFO MainThread:1534426 [wandb_init.py:setup_run_log_directory():723] Logging user logs to /work/phd_mimose/runs/m3ae18_fold3/wandb/run-20260716_085056-aoh8p5or/logs/debug.log
|
| 5 |
+
2026-07-16 08:50:56,395 INFO MainThread:1534426 [wandb_init.py:setup_run_log_directory():724] Logging internal logs to /work/phd_mimose/runs/m3ae18_fold3/wandb/run-20260716_085056-aoh8p5or/logs/debug-internal.log
|
| 6 |
+
2026-07-16 08:50:56,395 INFO MainThread:1534426 [wandb_init.py:init():850] calling init triggers
|
| 7 |
+
2026-07-16 08:50:56,395 INFO MainThread:1534426 [wandb_init.py:init():855] wandb.init called with sweep_config: {}
|
| 8 |
+
config: {'input_dir': '/work/phd_mimose/m3ae-preprocessed', 'output_dir': '/work/phd_mimose/runs/m3ae18_fold3', 'num_epochs': 300, 'validation_every': 10, 'batch_size': 8, 'num_workers': 8, 'fp16': False, 'compile': False, 'seed': 0, 'custom_trainer_kwargs': {'iter_per_epoch': None, 'patch_size': 128, 'debug': False, 'transform_kind': 'imfuse', 'train_masking_mode': 'random', 'val_masking_mode': 'validation', 'pretrain_fraction': 0.15, 'limage_lr': 0.005, 'limage_reg_weight': 0.005, 'split_file': '/homes/ocarpentiero/MiMoSe/src/mimose/data/splits/splits_5fold.json', 'fold': 3}, 'model_class': 'M3AE', 'model_kwargs': {'num_cls': 4}, 'optimizer_class': 'Adam', 'optimizer': {'lr': 0.0024, 'weight_decay': 1e-05, 'betas': (0.9, 0.999), 'momentum': None, 'eps': 1e-08}, 'loss_class': 'M3AELoss', 'loss_kwargs': {'num_classes': None, 'log_clamp_min': 0.005}, 'scheduler_class': 'CosineAnnealingLR', 'scheduler_kwargs': {'T_max': 300, 'eta_min': 0.0}, 'push_to_hf': True, 'hf_repo': 'AImageLab-Zip/MiMoSe', 'dataset_type': <DatasetType.BRATS18: 'brats18'>, 'iter_per_epoch': None, 'patch_size': 128, 'debug': False, 'train_masking_mode': <MaskingMode.RANDOM: 'random'>, 'val_masking_mode': <MaskingMode.VALIDATION: 'validation'>, 'split_file': '/homes/ocarpentiero/MiMoSe/src/mimose/data/splits/splits_5fold.json', '_wandb': {}}
|
| 9 |
+
2026-07-16 08:50:56,395 INFO MainThread:1534426 [wandb_init.py:init():898] starting backend
|
| 10 |
+
2026-07-16 08:50:56,936 INFO MainThread:1534426 [wandb_init.py:init():913] sending inform_init request
|
| 11 |
+
2026-07-16 08:50:57,319 INFO MainThread:1534426 [wandb_init.py:init():918] backend started and connected
|
| 12 |
+
2026-07-16 08:50:57,328 INFO MainThread:1534426 [wandb_init.py:init():988] updated telemetry
|
| 13 |
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2026-07-16 08:50:57,385 INFO MainThread:1534426 [wandb_init.py:init():1011] communicating run to backend with 90.0 second timeout
|
| 14 |
+
2026-07-16 08:50:57,732 INFO MainThread:1534426 [wandb_init.py:init():1056] starting run threads in backend
|
| 15 |
+
2026-07-16 08:50:58,112 INFO MainThread:1534426 [wandb_run.py:_console_start():2554] atexit reg
|
| 16 |
+
2026-07-16 08:50:58,112 INFO MainThread:1534426 [wandb_run.py:_redirect():2403] redirect: wrap_raw
|
| 17 |
+
2026-07-16 08:50:58,112 INFO MainThread:1534426 [wandb_run.py:_redirect():2472] Wrapping output streams.
|
| 18 |
+
2026-07-16 08:50:58,112 INFO MainThread:1534426 [wandb_run.py:_redirect():2495] Redirects installed.
|
| 19 |
+
2026-07-16 08:50:58,120 INFO MainThread:1534426 [wandb_init.py:init():1094] run started, returning control to user process
|
| 20 |
+
2026-07-16 12:58:59,985 INFO MainThread:1534426 [wandb_run.py:_finish():2321] finishing run homarone-unimore/MiMoSe/aoh8p5or
|
| 21 |
+
2026-07-16 12:58:59,987 INFO MainThread:1534426 [wandb_run.py:_atexit_cleanup():2520] got exitcode: 0
|
| 22 |
+
2026-07-16 12:58:59,989 INFO MainThread:1534426 [wandb_run.py:_restore():2502] restore
|
| 23 |
+
2026-07-16 12:58:59,989 INFO MainThread:1534426 [wandb_run.py:_restore():2508] restore done
|
m3ae18_fold3/wandb/run-20260716_085056-aoh8p5or/files/config.yaml
ADDED
|
@@ -0,0 +1,187 @@
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|
| 1 |
+
_wandb:
|
| 2 |
+
value:
|
| 3 |
+
cli_version: 0.26.1
|
| 4 |
+
e:
|
| 5 |
+
c1lz1hj5ym342fya2f1xc8mdao5kp7ja:
|
| 6 |
+
args:
|
| 7 |
+
- train
|
| 8 |
+
- --config
|
| 9 |
+
- m3ae_18.yaml
|
| 10 |
+
- --fold
|
| 11 |
+
- "3"
|
| 12 |
+
- --run-suffix
|
| 13 |
+
- fold3
|
| 14 |
+
- --seed
|
| 15 |
+
- "0"
|
| 16 |
+
- --try-resume
|
| 17 |
+
codePath: .venv/bin/mimose
|
| 18 |
+
codePathLocal: .venv/bin/mimose
|
| 19 |
+
cpu_count: 24
|
| 20 |
+
cpu_count_logical: 48
|
| 21 |
+
cudaVersion: "13.2"
|
| 22 |
+
disk:
|
| 23 |
+
/:
|
| 24 |
+
total: "214643507200"
|
| 25 |
+
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git:
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| 28 |
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commit: 210b4b036fc8ef05a1259b830025b1633fe5fb48
|
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|
| 30 |
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|
| 31 |
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|
| 32 |
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|
| 33 |
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|
| 34 |
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|
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| 40 |
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|
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os: Linux-5.15.0-181-generic-x86_64-with-glibc2.35
|
| 42 |
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program: /homes/ocarpentiero/MiMoSe/.venv/bin/mimose
|
| 43 |
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python: CPython 3.12.13
|
| 44 |
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root: /work/phd_mimose/runs/m3ae18_fold3
|
| 45 |
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slurm:
|
| 46 |
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cluster_name: aimagelab
|
| 47 |
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conf: /etc/slurm/slurm.conf
|
| 48 |
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cpus_on_node: "8"
|
| 49 |
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cpus_per_task: "8"
|
| 50 |
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|
| 51 |
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|
| 52 |
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|
| 53 |
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|
| 54 |
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| 55 |
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|
| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
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|
| 64 |
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|
| 65 |
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|
| 66 |
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|
| 67 |
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| 68 |
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|
| 69 |
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| 71 |
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| 72 |
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|
| 73 |
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| 74 |
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ntasks: "1"
|
| 75 |
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|
| 76 |
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|
| 77 |
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procid: "0"
|
| 78 |
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submit_dir: /homes/ocarpentiero/MiMoSe
|
| 79 |
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submit_host: ailb-login-03
|
| 80 |
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task_pid: "1534423"
|
| 81 |
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tasks_per_node: "1"
|
| 82 |
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topology_addr: franco
|
| 83 |
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topology_addr_pattern: node
|
| 84 |
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tres_per_task: cpu=8
|
| 85 |
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startedAt: "2026-07-16T06:50:56.289021Z"
|
| 86 |
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writerId: c1lz1hj5ym342fya2f1xc8mdao5kp7ja
|
| 87 |
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python_version: 3.12.13
|
| 89 |
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| 94 |
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| 95 |
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| 100 |
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| 102 |
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| 103 |
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| 104 |
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|
| 105 |
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| 106 |
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|
| 109 |
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| 110 |
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|
| 111 |
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|
| 112 |
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|
| 113 |
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compile:
|
| 114 |
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|
| 115 |
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custom_trainer_kwargs:
|
| 116 |
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value:
|
| 117 |
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|
| 118 |
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|
| 119 |
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iter_per_epoch: null
|
| 120 |
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|
| 121 |
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limage_reg_weight: 0.005
|
| 122 |
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|
| 123 |
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|
| 124 |
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split_file: /homes/ocarpentiero/MiMoSe/src/mimose/data/splits/splits_5fold.json
|
| 125 |
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|
| 126 |
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transform_kind: imfuse
|
| 127 |
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val_masking_mode: validation
|
| 128 |
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dataset_type:
|
| 129 |
+
value: BRATS18
|
| 130 |
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|
| 131 |
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|
| 132 |
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fp16:
|
| 133 |
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|
| 134 |
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hf_repo:
|
| 135 |
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|
| 136 |
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|
| 137 |
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value: /work/phd_mimose/m3ae-preprocessed
|
| 138 |
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iter_per_epoch:
|
| 139 |
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|
| 140 |
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loss_class:
|
| 141 |
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value: M3AELoss
|
| 142 |
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loss_kwargs:
|
| 143 |
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value:
|
| 144 |
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|
| 145 |
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num_classes: null
|
| 146 |
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model_class:
|
| 147 |
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value: M3AE
|
| 148 |
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model_kwargs:
|
| 149 |
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value:
|
| 150 |
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|
| 151 |
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|
| 152 |
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value: 300
|
| 153 |
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|
| 154 |
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|
| 155 |
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optimizer:
|
| 156 |
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value:
|
| 157 |
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betas:
|
| 158 |
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|
| 159 |
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|
| 160 |
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eps: 1e-08
|
| 161 |
+
lr: 0.0024
|
| 162 |
+
momentum: null
|
| 163 |
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weight_decay: 1e-05
|
| 164 |
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optimizer_class:
|
| 165 |
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value: Adam
|
| 166 |
+
output_dir:
|
| 167 |
+
value: /work/phd_mimose/runs/m3ae18_fold3
|
| 168 |
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patch_size:
|
| 169 |
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value: 128
|
| 170 |
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push_to_hf:
|
| 171 |
+
value: true
|
| 172 |
+
scheduler_class:
|
| 173 |
+
value: CosineAnnealingLR
|
| 174 |
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scheduler_kwargs:
|
| 175 |
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value:
|
| 176 |
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T_max: 300
|
| 177 |
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eta_min: 0
|
| 178 |
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seed:
|
| 179 |
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value: 0
|
| 180 |
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split_file:
|
| 181 |
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value: /homes/ocarpentiero/MiMoSe/src/mimose/data/splits/splits_5fold.json
|
| 182 |
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train_masking_mode:
|
| 183 |
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value: RANDOM
|
| 184 |
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val_masking_mode:
|
| 185 |
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value: VALIDATION
|
| 186 |
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validation_every:
|
| 187 |
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value: 10
|
m3ae18_fold3/wandb/run-20260716_085056-aoh8p5or/files/output.log
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
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|
|
|
|
|
|
|
|
|
| 1 |
+
Processing Files (1 / 1) : 100%|██████████| 52.4MB / 52.4MB, 11.4MB/s
|
| 2 |
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New Data Upload : 100%|██████████| 52.4MB / 52.4MB, 11.4MB/s
|
| 3 |
+
..._weights_only.safetensors: 100%|██████████| 52.4MB / 52.4MB
|
m3ae18_fold3/wandb/run-20260716_085056-aoh8p5or/files/requirements.txt
ADDED
|
@@ -0,0 +1,124 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
six==1.17.0
|
| 2 |
+
nvidia-cutlass-dsl==4.6.0
|
| 3 |
+
et_xmlfile==2.0.0
|
| 4 |
+
certifi==2026.4.22
|
| 5 |
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nvidia-nccl-cu12==2.27.5
|
| 6 |
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regex==2026.6.28
|
| 7 |
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ml_dtypes==0.5.4
|
| 8 |
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simpleitk==2.5.4
|
| 9 |
+
kiwisolver==1.5.0
|
| 10 |
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idna==3.13
|
| 11 |
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annotated-types==0.7.0
|
| 12 |
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nvidia-cutlass-dsl-libs-cu12==4.6.0
|
| 13 |
+
cycler==0.12.1
|
| 14 |
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ptflops==0.7.5
|
| 15 |
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typing-inspection==0.4.2
|
| 16 |
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ninja==1.13.0
|
| 17 |
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nvidia-cufile-cu12==1.13.1.3
|
| 18 |
+
nvidia-cuda-nvrtc-cu12==12.8.93
|
| 19 |
+
cloudpickle==3.1.2
|
| 20 |
+
python-dateutil==2.9.0.post0
|
| 21 |
+
tokenizers==0.22.2
|
| 22 |
+
packaging==26.2
|
| 23 |
+
wcwidth==0.6.0
|
| 24 |
+
safetensors==0.7.0
|
| 25 |
+
torch_c_dlpack_ext==0.1.5
|
| 26 |
+
mdurl==0.1.2
|
| 27 |
+
click==8.3.3
|
| 28 |
+
Jinja2==3.1.6
|
| 29 |
+
dynamic_network_architectures==0.4.3
|
| 30 |
+
contourpy==1.3.3
|
| 31 |
+
pydantic_core==2.46.3
|
| 32 |
+
nvidia-curand-cu12==10.3.9.90
|
| 33 |
+
PyYAML==6.0.3
|
| 34 |
+
GitPython==3.1.49
|
| 35 |
+
gitdb==4.0.12
|
| 36 |
+
nvidia-cusparselt-cu12==0.7.1
|
| 37 |
+
nvidia-cusparse-cu12==12.5.8.93
|
| 38 |
+
z3-solver==4.15.4.0
|
| 39 |
+
nvidia-nvtx-cu12==12.8.90
|
| 40 |
+
nvidia-nvjitlink-cu12==12.8.93
|
| 41 |
+
nvidia-cufft-cu12==11.3.3.83
|
| 42 |
+
httpcore==1.0.9
|
| 43 |
+
cuda-python==13.3.1
|
| 44 |
+
MiMoSe==0.0.2
|
| 45 |
+
nvidia-cublas-cu12==12.8.4.1
|
| 46 |
+
nodeocc==1.0.26
|
| 47 |
+
MarkupSafe==3.0.3
|
| 48 |
+
timm==1.0.22
|
| 49 |
+
charset-normalizer==3.4.7
|
| 50 |
+
thop==0.1.1-2209072238
|
| 51 |
+
shellingham==1.5.4
|
| 52 |
+
threadpoolctl==3.6.0
|
| 53 |
+
anyio==4.13.0
|
| 54 |
+
nvidia-cudnn-cu12==9.10.2.21
|
| 55 |
+
smmap==5.0.3
|
| 56 |
+
nvidia-cuda-cupti-cu12==12.8.90
|
| 57 |
+
nvidia-cuda-nvdisasm==13.3.73
|
| 58 |
+
typer==0.25.0
|
| 59 |
+
typing_extensions==4.15.0
|
| 60 |
+
causal-conv1d==1.6.2.post1
|
| 61 |
+
requests==2.33.1
|
| 62 |
+
mamba-ssm==2.3.2.post1
|
| 63 |
+
psutil==7.2.2
|
| 64 |
+
filelock==3.29.0
|
| 65 |
+
httpx==0.28.1
|
| 66 |
+
nvidia-cusolver-cu12==11.7.3.90
|
| 67 |
+
markdown-it-py==4.0.0
|
| 68 |
+
urllib3==2.6.3
|
| 69 |
+
h11==0.16.0
|
| 70 |
+
nvidia-nvshmem-cu12==3.3.20
|
| 71 |
+
pyparsing==3.3.2
|
| 72 |
+
annotated-doc==0.0.4
|
| 73 |
+
hf-xet==1.4.3
|
| 74 |
+
cuda-pathfinder==1.5.6
|
| 75 |
+
platformdirs==4.9.6
|
| 76 |
+
MedPy==0.5.2
|
| 77 |
+
einops==0.8.2
|
| 78 |
+
wheel==0.47.0
|
| 79 |
+
tqdm==4.67.3
|
| 80 |
+
h5py==3.16.0
|
| 81 |
+
protobuf==6.33.6
|
| 82 |
+
nvidia-cuda-runtime-cu12==12.8.90
|
| 83 |
+
fsspec==2026.4.0
|
| 84 |
+
ttkbootstrap==1.20.2
|
| 85 |
+
nvidia-cutlass-dsl-libs-base==4.6.0
|
| 86 |
+
mpmath==1.3.0
|
| 87 |
+
rich==15.0.0
|
| 88 |
+
pillow==12.2.0
|
| 89 |
+
cuda-bindings==13.3.1
|
| 90 |
+
quack-kernels==0.6.0
|
| 91 |
+
prompt_toolkit==3.0.52
|
| 92 |
+
joblib==1.5.3
|
| 93 |
+
pydantic==2.13.3
|
| 94 |
+
nvidia-cutlass-dsl-libs-core==4.6.0
|
| 95 |
+
openpyxl==3.1.5
|
| 96 |
+
huggingface_hub==1.13.0
|
| 97 |
+
torchvision==0.24.1
|
| 98 |
+
sentry-sdk==2.58.0
|
| 99 |
+
cuda-core==1.0.1
|
| 100 |
+
apache-tvm-ffi==0.1.9
|
| 101 |
+
wandb==0.26.1
|
| 102 |
+
fonttools==4.62.1
|
| 103 |
+
Pygments==2.20.0
|
| 104 |
+
triton==3.5.1
|
| 105 |
+
setuptools==82.0.1
|
| 106 |
+
networkx==3.6.1
|
| 107 |
+
matplotlib==3.10.9
|
| 108 |
+
numpy==2.4.4
|
| 109 |
+
scikit-learn==1.8.0
|
| 110 |
+
scipy==1.17.1
|
| 111 |
+
pandas==3.0.2
|
| 112 |
+
sympy==1.14.0
|
| 113 |
+
transformers==5.12.1
|
| 114 |
+
tilelang==0.1.8
|
| 115 |
+
torch==2.9.1
|
| 116 |
+
mypy_extensions==1.1.0
|
| 117 |
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iniconfig==2.3.0
|
| 118 |
+
pluggy==1.6.0
|
| 119 |
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ruff==0.15.12
|
| 120 |
+
librt==0.9.0
|
| 121 |
+
pathspec==1.1.1
|
| 122 |
+
pytest==9.0.3
|
| 123 |
+
mypy==1.20.2
|
| 124 |
+
MiMoSe==0.0.2
|
m3ae18_fold3/wandb/run-20260716_085056-aoh8p5or/files/wandb-metadata.json
ADDED
|
@@ -0,0 +1,92 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
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|
|
|
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| 1 |
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m3ae18_fold3/wandb/run-20260716_085056-aoh8p5or/files/wandb-summary.json
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m3ae18_fold3/wandb/run-20260716_085056-aoh8p5or/logs/debug-core.log
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m3ae18_fold3/wandb/run-20260716_085056-aoh8p5or/logs/debug-internal.log
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m3ae18_fold3/wandb/run-20260716_085056-aoh8p5or/logs/debug.log
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2026-07-16 08:50:56,395 INFO MainThread:1534426 [wandb_init.py:setup_run_log_directory():724] Logging internal logs to /work/phd_mimose/runs/m3ae18_fold3/wandb/run-20260716_085056-aoh8p5or/logs/debug-internal.log
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2026-07-16 08:50:56,395 INFO MainThread:1534426 [wandb_init.py:init():850] calling init triggers
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2026-07-16 08:50:56,395 INFO MainThread:1534426 [wandb_init.py:init():855] wandb.init called with sweep_config: {}
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| 8 |
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config: {'input_dir': '/work/phd_mimose/m3ae-preprocessed', 'output_dir': '/work/phd_mimose/runs/m3ae18_fold3', 'num_epochs': 300, 'validation_every': 10, 'batch_size': 8, 'num_workers': 8, 'fp16': False, 'compile': False, 'seed': 0, 'custom_trainer_kwargs': {'iter_per_epoch': None, 'patch_size': 128, 'debug': False, 'transform_kind': 'imfuse', 'train_masking_mode': 'random', 'val_masking_mode': 'validation', 'pretrain_fraction': 0.15, 'limage_lr': 0.005, 'limage_reg_weight': 0.005, 'split_file': '/homes/ocarpentiero/MiMoSe/src/mimose/data/splits/splits_5fold.json', 'fold': 3}, 'model_class': 'M3AE', 'model_kwargs': {'num_cls': 4}, 'optimizer_class': 'Adam', 'optimizer': {'lr': 0.0024, 'weight_decay': 1e-05, 'betas': (0.9, 0.999), 'momentum': None, 'eps': 1e-08}, 'loss_class': 'M3AELoss', 'loss_kwargs': {'num_classes': None, 'log_clamp_min': 0.005}, 'scheduler_class': 'CosineAnnealingLR', 'scheduler_kwargs': {'T_max': 300, 'eta_min': 0.0}, 'push_to_hf': True, 'hf_repo': 'AImageLab-Zip/MiMoSe', 'dataset_type': <DatasetType.BRATS18: 'brats18'>, 'iter_per_epoch': None, 'patch_size': 128, 'debug': False, 'train_masking_mode': <MaskingMode.RANDOM: 'random'>, 'val_masking_mode': <MaskingMode.VALIDATION: 'validation'>, 'split_file': '/homes/ocarpentiero/MiMoSe/src/mimose/data/splits/splits_5fold.json', '_wandb': {}}
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| 21 |
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m3fecon18_fold1/huggingface/m3fecon18_fold1/config.json
ADDED
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{
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| 2 |
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"mimose_model_name": "M3FeCon",
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| 3 |
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"model_class": "M3FeCon",
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| 4 |
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"model_kwargs": {
|
| 5 |
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"num_cls": 4
|
| 6 |
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|
| 7 |
+
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m3fecon18_fold1/wandb/debug.log
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2026-07-15 10:00:55,746 INFO MainThread:941988 [wandb_setup.py:_flush():81] Current SDK version is 0.26.1
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2026-07-15 10:00:55,748 INFO MainThread:941988 [wandb_init.py:setup_run_log_directory():724] Logging internal logs to /work/phd_mimose/runs/m3fecon18_fold1/wandb/run-20260715_100055-qijay3oy/logs/debug-internal.log
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| 6 |
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2026-07-15 10:00:55,748 INFO MainThread:941988 [wandb_init.py:init():850] calling init triggers
|
| 7 |
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2026-07-15 10:00:55,748 INFO MainThread:941988 [wandb_init.py:init():855] wandb.init called with sweep_config: {}
|
| 8 |
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config: {'input_dir': '/work/phd_mimose/m3fecon-preprocessed', 'output_dir': '/work/phd_mimose/runs/m3fecon18_fold1', 'num_epochs': 500, 'validation_every': 10, 'batch_size': 8, 'num_workers': 8, 'fp16': True, 'compile': False, 'seed': 0, 'custom_trainer_kwargs': {'iter_per_epoch': None, 'patch_size': 128, 'debug': False, 'transform_kind': 'imfuse', 'train_masking_mode': 'random', 'val_masking_mode': 'validation', 'split_file': '/homes/ocarpentiero/MiMoSe/src/mimose/data/splits/splits_5fold.json', 'fold': 1}, 'model_class': 'M3FeCon', 'model_kwargs': {'num_cls': 4}, 'optimizer_class': 'SGD', 'optimizer': {'lr': 0.01, 'weight_decay': 3e-05, 'betas': None, 'momentum': 0.99, 'eps': None}, 'loss_class': 'M3FeConLoss', 'loss_kwargs': {'num_classes': None, 'log_clamp_min': 0.005}, 'scheduler_class': 'PolynomialLR', 'scheduler_kwargs': {'total_iters': 500, 'power': 0.9}, 'push_to_hf': True, 'hf_repo': 'AImageLab-Zip/MiMoSe', 'dataset_type': <DatasetType.BRATS18: 'brats18'>, 'iter_per_epoch': None, 'patch_size': 128, 'debug': False, 'train_masking_mode': <MaskingMode.RANDOM: 'random'>, 'val_masking_mode': <MaskingMode.VALIDATION: 'validation'>, 'split_file': '/homes/ocarpentiero/MiMoSe/src/mimose/data/splits/splits_5fold.json', '_wandb': {}}
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| 9 |
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2026-07-15 10:00:55,748 INFO MainThread:941988 [wandb_init.py:init():898] starting backend
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| 12 |
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2026-07-15 10:00:56,623 INFO MainThread:941988 [wandb_init.py:init():988] updated telemetry
|
| 13 |
+
2026-07-15 10:00:56,662 INFO MainThread:941988 [wandb_init.py:init():1011] communicating run to backend with 90.0 second timeout
|
| 14 |
+
2026-07-15 10:00:57,020 INFO MainThread:941988 [wandb_init.py:init():1056] starting run threads in backend
|
| 15 |
+
2026-07-15 10:00:57,421 INFO MainThread:941988 [wandb_run.py:_console_start():2554] atexit reg
|
| 16 |
+
2026-07-15 10:00:57,421 INFO MainThread:941988 [wandb_run.py:_redirect():2403] redirect: wrap_raw
|
| 17 |
+
2026-07-15 10:00:57,421 INFO MainThread:941988 [wandb_run.py:_redirect():2472] Wrapping output streams.
|
| 18 |
+
2026-07-15 10:00:57,422 INFO MainThread:941988 [wandb_run.py:_redirect():2495] Redirects installed.
|
| 19 |
+
2026-07-15 10:00:57,434 INFO MainThread:941988 [wandb_init.py:init():1094] run started, returning control to user process
|
| 20 |
+
2026-07-15 21:08:04,276 INFO MainThread:941988 [wandb_run.py:_finish():2321] finishing run homarone-unimore/MiMoSe/qijay3oy
|
| 21 |
+
2026-07-15 21:08:04,277 INFO MainThread:941988 [wandb_run.py:_atexit_cleanup():2520] got exitcode: 0
|
| 22 |
+
2026-07-15 21:08:04,281 INFO MainThread:941988 [wandb_run.py:_restore():2502] restore
|
| 23 |
+
2026-07-15 21:08:04,281 INFO MainThread:941988 [wandb_run.py:_restore():2508] restore done
|
m3fecon18_fold1/wandb/run-20260715_100055-qijay3oy/files/config.yaml
ADDED
|
@@ -0,0 +1,182 @@
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|
| 1 |
+
_wandb:
|
| 2 |
+
value:
|
| 3 |
+
cli_version: 0.26.1
|
| 4 |
+
e:
|
| 5 |
+
swkry2kmvbypddm0g1ti54spqp292lnf:
|
| 6 |
+
args:
|
| 7 |
+
- train
|
| 8 |
+
- --config
|
| 9 |
+
- m3fecon_18.yaml
|
| 10 |
+
- --fold
|
| 11 |
+
- "1"
|
| 12 |
+
- --run-suffix
|
| 13 |
+
- fold1
|
| 14 |
+
- --seed
|
| 15 |
+
- "0"
|
| 16 |
+
- --try-resume
|
| 17 |
+
codePath: .venv/bin/mimose
|
| 18 |
+
codePathLocal: .venv/bin/mimose
|
| 19 |
+
cpu_count: 24
|
| 20 |
+
cpu_count_logical: 48
|
| 21 |
+
cudaVersion: "13.2"
|
| 22 |
+
disk:
|
| 23 |
+
/:
|
| 24 |
+
total: "214643507200"
|
| 25 |
+
used: "32275476480"
|
| 26 |
+
executable: /homes/ocarpentiero/MiMoSe/.venv/bin/python3
|
| 27 |
+
git:
|
| 28 |
+
commit: dbe44d0ffb90725da1a815f387c2bc6d29c1acea
|
| 29 |
+
remote: https://github.com/AImageLab-zip/IM-Fuse.git
|
| 30 |
+
gpu: NVIDIA L40S
|
| 31 |
+
gpu_count: 1
|
| 32 |
+
gpu_nvidia:
|
| 33 |
+
- architecture: Ada
|
| 34 |
+
cudaCores: 18176
|
| 35 |
+
memoryTotal: "48305799168"
|
| 36 |
+
name: NVIDIA L40S
|
| 37 |
+
uuid: GPU-62fb2705-8cba-79c8-6faa-36706b6669a4
|
| 38 |
+
host: labetty
|
| 39 |
+
memory:
|
| 40 |
+
total: "540712652800"
|
| 41 |
+
os: Linux-5.15.0-181-generic-x86_64-with-glibc2.35
|
| 42 |
+
program: /homes/ocarpentiero/MiMoSe/.venv/bin/mimose
|
| 43 |
+
python: CPython 3.12.13
|
| 44 |
+
root: /work/phd_mimose/runs/m3fecon18_fold1
|
| 45 |
+
slurm:
|
| 46 |
+
cluster_name: aimagelab
|
| 47 |
+
conf: /etc/slurm/slurm.conf
|
| 48 |
+
cpus_on_node: "8"
|
| 49 |
+
cpus_per_task: "8"
|
| 50 |
+
gpus_on_node: "1"
|
| 51 |
+
gtids: "0"
|
| 52 |
+
job_account: phd_mimose
|
| 53 |
+
job_cpus_per_node: "8"
|
| 54 |
+
job_dependency: singleton
|
| 55 |
+
job_end_time: "1784188836"
|
| 56 |
+
job_gid: "502"
|
| 57 |
+
job_gpus: "2"
|
| 58 |
+
job_id: "66172"
|
| 59 |
+
job_name: M3FECON18_FOLD_1
|
| 60 |
+
job_nodelist: labetty
|
| 61 |
+
job_num_nodes: "1"
|
| 62 |
+
job_partition: boost_usr_prod
|
| 63 |
+
job_qos: normal
|
| 64 |
+
job_start_time: "1784102436"
|
| 65 |
+
job_uid: "92375"
|
| 66 |
+
job_user: ocarpentiero
|
| 67 |
+
jobid: "66172"
|
| 68 |
+
localid: "0"
|
| 69 |
+
mem_per_node: "102400"
|
| 70 |
+
nnodes: "1"
|
| 71 |
+
nodeid: "0"
|
| 72 |
+
nodelist: labetty
|
| 73 |
+
nprocs: "1"
|
| 74 |
+
ntasks: "1"
|
| 75 |
+
oom_kill_step: "0"
|
| 76 |
+
prio_process: "0"
|
| 77 |
+
procid: "0"
|
| 78 |
+
submit_dir: /homes/ocarpentiero/MiMoSe
|
| 79 |
+
submit_host: ailb-login-02
|
| 80 |
+
task_pid: "941985"
|
| 81 |
+
tasks_per_node: "1"
|
| 82 |
+
topology_addr: labetty
|
| 83 |
+
topology_addr_pattern: node
|
| 84 |
+
tres_per_task: cpu=8
|
| 85 |
+
startedAt: "2026-07-15T08:00:55.609725Z"
|
| 86 |
+
writerId: swkry2kmvbypddm0g1ti54spqp292lnf
|
| 87 |
+
m: []
|
| 88 |
+
python_version: 3.12.13
|
| 89 |
+
t:
|
| 90 |
+
"1":
|
| 91 |
+
- 1
|
| 92 |
+
- 5
|
| 93 |
+
- 11
|
| 94 |
+
- 49
|
| 95 |
+
- 53
|
| 96 |
+
"2":
|
| 97 |
+
- 1
|
| 98 |
+
- 5
|
| 99 |
+
- 11
|
| 100 |
+
- 49
|
| 101 |
+
- 53
|
| 102 |
+
"3":
|
| 103 |
+
- 2
|
| 104 |
+
- 13
|
| 105 |
+
- 16
|
| 106 |
+
"4": 3.12.13
|
| 107 |
+
"5": 0.26.1
|
| 108 |
+
"6": 5.12.1
|
| 109 |
+
"12": 0.26.1
|
| 110 |
+
"13": linux-x86_64
|
| 111 |
+
batch_size:
|
| 112 |
+
value: 8
|
| 113 |
+
compile:
|
| 114 |
+
value: false
|
| 115 |
+
custom_trainer_kwargs:
|
| 116 |
+
value:
|
| 117 |
+
debug: false
|
| 118 |
+
fold: 1
|
| 119 |
+
iter_per_epoch: null
|
| 120 |
+
patch_size: 128
|
| 121 |
+
split_file: /homes/ocarpentiero/MiMoSe/src/mimose/data/splits/splits_5fold.json
|
| 122 |
+
train_masking_mode: random
|
| 123 |
+
transform_kind: imfuse
|
| 124 |
+
val_masking_mode: validation
|
| 125 |
+
dataset_type:
|
| 126 |
+
value: BRATS18
|
| 127 |
+
debug:
|
| 128 |
+
value: false
|
| 129 |
+
fp16:
|
| 130 |
+
value: true
|
| 131 |
+
hf_repo:
|
| 132 |
+
value: AImageLab-Zip/MiMoSe
|
| 133 |
+
input_dir:
|
| 134 |
+
value: /work/phd_mimose/m3fecon-preprocessed
|
| 135 |
+
iter_per_epoch:
|
| 136 |
+
value: null
|
| 137 |
+
loss_class:
|
| 138 |
+
value: M3FeConLoss
|
| 139 |
+
loss_kwargs:
|
| 140 |
+
value:
|
| 141 |
+
log_clamp_min: 0.005
|
| 142 |
+
num_classes: null
|
| 143 |
+
model_class:
|
| 144 |
+
value: M3FeCon
|
| 145 |
+
model_kwargs:
|
| 146 |
+
value:
|
| 147 |
+
num_cls: 4
|
| 148 |
+
num_epochs:
|
| 149 |
+
value: 500
|
| 150 |
+
num_workers:
|
| 151 |
+
value: 8
|
| 152 |
+
optimizer:
|
| 153 |
+
value:
|
| 154 |
+
betas: null
|
| 155 |
+
eps: null
|
| 156 |
+
lr: 0.01
|
| 157 |
+
momentum: 0.99
|
| 158 |
+
weight_decay: 3e-05
|
| 159 |
+
optimizer_class:
|
| 160 |
+
value: SGD
|
| 161 |
+
output_dir:
|
| 162 |
+
value: /work/phd_mimose/runs/m3fecon18_fold1
|
| 163 |
+
patch_size:
|
| 164 |
+
value: 128
|
| 165 |
+
push_to_hf:
|
| 166 |
+
value: true
|
| 167 |
+
scheduler_class:
|
| 168 |
+
value: PolynomialLR
|
| 169 |
+
scheduler_kwargs:
|
| 170 |
+
value:
|
| 171 |
+
power: 0.9
|
| 172 |
+
total_iters: 500
|
| 173 |
+
seed:
|
| 174 |
+
value: 0
|
| 175 |
+
split_file:
|
| 176 |
+
value: /homes/ocarpentiero/MiMoSe/src/mimose/data/splits/splits_5fold.json
|
| 177 |
+
train_masking_mode:
|
| 178 |
+
value: RANDOM
|
| 179 |
+
val_masking_mode:
|
| 180 |
+
value: VALIDATION
|
| 181 |
+
validation_every:
|
| 182 |
+
value: 10
|
m3fecon18_fold1/wandb/run-20260715_100055-qijay3oy/files/output.log
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
Processing Files (1 / 1) : 100%|██████████| 152MB / 152MB, 15.5MB/s
|
| 2 |
+
New Data Upload : 100%|██████████| 152MB / 152MB, 15.5MB/s
|
| 3 |
+
..._weights_only.safetensors: 100%|██████████| 152MB / 152MB
|
m3fecon18_fold1/wandb/run-20260715_100055-qijay3oy/files/requirements.txt
ADDED
|
@@ -0,0 +1,124 @@
|
|
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|
| 1 |
+
six==1.17.0
|
| 2 |
+
nvidia-cutlass-dsl==4.6.0
|
| 3 |
+
et_xmlfile==2.0.0
|
| 4 |
+
certifi==2026.4.22
|
| 5 |
+
nvidia-nccl-cu12==2.27.5
|
| 6 |
+
regex==2026.6.28
|
| 7 |
+
ml_dtypes==0.5.4
|
| 8 |
+
simpleitk==2.5.4
|
| 9 |
+
kiwisolver==1.5.0
|
| 10 |
+
idna==3.13
|
| 11 |
+
annotated-types==0.7.0
|
| 12 |
+
nvidia-cutlass-dsl-libs-cu12==4.6.0
|
| 13 |
+
cycler==0.12.1
|
| 14 |
+
ptflops==0.7.5
|
| 15 |
+
typing-inspection==0.4.2
|
| 16 |
+
ninja==1.13.0
|
| 17 |
+
nvidia-cufile-cu12==1.13.1.3
|
| 18 |
+
nvidia-cuda-nvrtc-cu12==12.8.93
|
| 19 |
+
cloudpickle==3.1.2
|
| 20 |
+
python-dateutil==2.9.0.post0
|
| 21 |
+
tokenizers==0.22.2
|
| 22 |
+
packaging==26.2
|
| 23 |
+
wcwidth==0.6.0
|
| 24 |
+
safetensors==0.7.0
|
| 25 |
+
torch_c_dlpack_ext==0.1.5
|
| 26 |
+
mdurl==0.1.2
|
| 27 |
+
click==8.3.3
|
| 28 |
+
Jinja2==3.1.6
|
| 29 |
+
dynamic_network_architectures==0.4.3
|
| 30 |
+
contourpy==1.3.3
|
| 31 |
+
pydantic_core==2.46.3
|
| 32 |
+
nvidia-curand-cu12==10.3.9.90
|
| 33 |
+
PyYAML==6.0.3
|
| 34 |
+
GitPython==3.1.49
|
| 35 |
+
gitdb==4.0.12
|
| 36 |
+
nvidia-cusparselt-cu12==0.7.1
|
| 37 |
+
nvidia-cusparse-cu12==12.5.8.93
|
| 38 |
+
z3-solver==4.15.4.0
|
| 39 |
+
nvidia-nvtx-cu12==12.8.90
|
| 40 |
+
nvidia-nvjitlink-cu12==12.8.93
|
| 41 |
+
nvidia-cufft-cu12==11.3.3.83
|
| 42 |
+
httpcore==1.0.9
|
| 43 |
+
cuda-python==13.3.1
|
| 44 |
+
MiMoSe==0.0.2
|
| 45 |
+
nvidia-cublas-cu12==12.8.4.1
|
| 46 |
+
nodeocc==1.0.26
|
| 47 |
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MarkupSafe==3.0.3
|
| 48 |
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timm==1.0.22
|
| 49 |
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charset-normalizer==3.4.7
|
| 50 |
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thop==0.1.1-2209072238
|
| 51 |
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shellingham==1.5.4
|
| 52 |
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threadpoolctl==3.6.0
|
| 53 |
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anyio==4.13.0
|
| 54 |
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nvidia-cudnn-cu12==9.10.2.21
|
| 55 |
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smmap==5.0.3
|
| 56 |
+
nvidia-cuda-cupti-cu12==12.8.90
|
| 57 |
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nvidia-cuda-nvdisasm==13.3.73
|
| 58 |
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typer==0.25.0
|
| 59 |
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typing_extensions==4.15.0
|
| 60 |
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causal-conv1d==1.6.2.post1
|
| 61 |
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requests==2.33.1
|
| 62 |
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mamba-ssm==2.3.2.post1
|
| 63 |
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psutil==7.2.2
|
| 64 |
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filelock==3.29.0
|
| 65 |
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httpx==0.28.1
|
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nvidia-cusolver-cu12==11.7.3.90
|
| 67 |
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markdown-it-py==4.0.0
|
| 68 |
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urllib3==2.6.3
|
| 69 |
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h11==0.16.0
|
| 70 |
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nvidia-nvshmem-cu12==3.3.20
|
| 71 |
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pyparsing==3.3.2
|
| 72 |
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annotated-doc==0.0.4
|
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hf-xet==1.4.3
|
| 74 |
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cuda-pathfinder==1.5.6
|
| 75 |
+
platformdirs==4.9.6
|
| 76 |
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MedPy==0.5.2
|
| 77 |
+
einops==0.8.2
|
| 78 |
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wheel==0.47.0
|
| 79 |
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tqdm==4.67.3
|
| 80 |
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h5py==3.16.0
|
| 81 |
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protobuf==6.33.6
|
| 82 |
+
nvidia-cuda-runtime-cu12==12.8.90
|
| 83 |
+
fsspec==2026.4.0
|
| 84 |
+
ttkbootstrap==1.20.2
|
| 85 |
+
nvidia-cutlass-dsl-libs-base==4.6.0
|
| 86 |
+
mpmath==1.3.0
|
| 87 |
+
rich==15.0.0
|
| 88 |
+
pillow==12.2.0
|
| 89 |
+
cuda-bindings==13.3.1
|
| 90 |
+
quack-kernels==0.6.0
|
| 91 |
+
prompt_toolkit==3.0.52
|
| 92 |
+
joblib==1.5.3
|
| 93 |
+
pydantic==2.13.3
|
| 94 |
+
nvidia-cutlass-dsl-libs-core==4.6.0
|
| 95 |
+
openpyxl==3.1.5
|
| 96 |
+
huggingface_hub==1.13.0
|
| 97 |
+
torchvision==0.24.1
|
| 98 |
+
sentry-sdk==2.58.0
|
| 99 |
+
cuda-core==1.0.1
|
| 100 |
+
apache-tvm-ffi==0.1.9
|
| 101 |
+
wandb==0.26.1
|
| 102 |
+
fonttools==4.62.1
|
| 103 |
+
Pygments==2.20.0
|
| 104 |
+
triton==3.5.1
|
| 105 |
+
setuptools==82.0.1
|
| 106 |
+
networkx==3.6.1
|
| 107 |
+
matplotlib==3.10.9
|
| 108 |
+
numpy==2.4.4
|
| 109 |
+
scikit-learn==1.8.0
|
| 110 |
+
scipy==1.17.1
|
| 111 |
+
pandas==3.0.2
|
| 112 |
+
sympy==1.14.0
|
| 113 |
+
transformers==5.12.1
|
| 114 |
+
tilelang==0.1.8
|
| 115 |
+
torch==2.9.1
|
| 116 |
+
mypy_extensions==1.1.0
|
| 117 |
+
iniconfig==2.3.0
|
| 118 |
+
pluggy==1.6.0
|
| 119 |
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ruff==0.15.12
|
| 120 |
+
librt==0.9.0
|
| 121 |
+
pathspec==1.1.1
|
| 122 |
+
pytest==9.0.3
|
| 123 |
+
mypy==1.20.2
|
| 124 |
+
MiMoSe==0.0.2
|
m3fecon18_fold1/wandb/run-20260715_100055-qijay3oy/files/wandb-metadata.json
ADDED
|
@@ -0,0 +1,92 @@
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"os": "Linux-5.15.0-181-generic-x86_64-with-glibc2.35",
|
| 3 |
+
"python": "CPython 3.12.13",
|
| 4 |
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"startedAt": "2026-07-15T08:00:55.609725Z",
|
| 5 |
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"args": [
|
| 6 |
+
"train",
|
| 7 |
+
"--config",
|
| 8 |
+
"m3fecon_18.yaml",
|
| 9 |
+
"--fold",
|
| 10 |
+
"1",
|
| 11 |
+
"--run-suffix",
|
| 12 |
+
"fold1",
|
| 13 |
+
"--seed",
|
| 14 |
+
"0",
|
| 15 |
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"--try-resume"
|
| 16 |
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],
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| 17 |
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"program": "/homes/ocarpentiero/MiMoSe/.venv/bin/mimose",
|
| 18 |
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"codePath": ".venv/bin/mimose",
|
| 19 |
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"codePathLocal": ".venv/bin/mimose",
|
| 20 |
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"git": {
|
| 21 |
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"remote": "https://github.com/AImageLab-zip/IM-Fuse.git",
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| 22 |
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"commit": "dbe44d0ffb90725da1a815f387c2bc6d29c1acea"
|
| 23 |
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},
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| 24 |
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"root": "/work/phd_mimose/runs/m3fecon18_fold1",
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| 25 |
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"host": "labetty",
|
| 26 |
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"executable": "/homes/ocarpentiero/MiMoSe/.venv/bin/python3",
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| 27 |
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"cpu_count": 24,
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"cpu_count_logical": 48,
|
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"gpu": "NVIDIA L40S",
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| 30 |
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"disk": {
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"/": {
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"total": "214643507200",
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"used": "32275476480"
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}
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"memory": {
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"total": "540712652800"
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},
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"gpu_nvidia": [
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{
|
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"name": "NVIDIA L40S",
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"memoryTotal": "48305799168",
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"cudaCores": 18176,
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"architecture": "Ada",
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| 46 |
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"uuid": "GPU-62fb2705-8cba-79c8-6faa-36706b6669a4"
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| 47 |
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}
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| 48 |
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],
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"cudaVersion": "13.2",
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| 50 |
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"slurm": {
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| 51 |
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"cluster_name": "aimagelab",
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| 52 |
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"conf": "/etc/slurm/slurm.conf",
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| 53 |
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"cpus_on_node": "8",
|
| 54 |
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"cpus_per_task": "8",
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| 55 |
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"gpus_on_node": "1",
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| 56 |
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"gtids": "0",
|
| 57 |
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"job_account": "phd_mimose",
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| 58 |
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"job_cpus_per_node": "8",
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| 59 |
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"job_dependency": "singleton",
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| 60 |
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"job_end_time": "1784188836",
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| 61 |
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"job_gid": "502",
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| 62 |
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"job_gpus": "2",
|
| 63 |
+
"job_id": "66172",
|
| 64 |
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"job_name": "M3FECON18_FOLD_1",
|
| 65 |
+
"job_nodelist": "labetty",
|
| 66 |
+
"job_num_nodes": "1",
|
| 67 |
+
"job_partition": "boost_usr_prod",
|
| 68 |
+
"job_qos": "normal",
|
| 69 |
+
"job_start_time": "1784102436",
|
| 70 |
+
"job_uid": "92375",
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| 71 |
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"job_user": "ocarpentiero",
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| 72 |
+
"jobid": "66172",
|
| 73 |
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"localid": "0",
|
| 74 |
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"mem_per_node": "102400",
|
| 75 |
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"nnodes": "1",
|
| 76 |
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"nodeid": "0",
|
| 77 |
+
"nodelist": "labetty",
|
| 78 |
+
"nprocs": "1",
|
| 79 |
+
"ntasks": "1",
|
| 80 |
+
"oom_kill_step": "0",
|
| 81 |
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"prio_process": "0",
|
| 82 |
+
"procid": "0",
|
| 83 |
+
"submit_dir": "/homes/ocarpentiero/MiMoSe",
|
| 84 |
+
"submit_host": "ailb-login-02",
|
| 85 |
+
"task_pid": "941985",
|
| 86 |
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"tasks_per_node": "1",
|
| 87 |
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"topology_addr": "labetty",
|
| 88 |
+
"topology_addr_pattern": "node",
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| 89 |
+
"tres_per_task": "cpu=8"
|
| 90 |
+
},
|
| 91 |
+
"writerId": "swkry2kmvbypddm0g1ti54spqp292lnf"
|
| 92 |
+
}
|
m3fecon18_fold1/wandb/run-20260715_100055-qijay3oy/files/wandb-summary.json
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
{"val/wt_hd95":12.149305646237881,"val/et_hd95":114.49997160764207,"train/recon":0.1845790402342876,"val/dice":0.5842055759607058,"val/wt":0.782797498688712,"_runtime":40027,"_timestamp":1.784142468114845e+09,"train/cross":0.03475727653130889,"epoch":500,"train/dice":0.1841797480980555,"val/tc_hd95":23.007993988532814,"_wandb":{"runtime":40027},"val/tc":0.6217605761892754,"val/loss":0.4528504892669875,"val/etpp":0.4508364524344799,"_step":499,"lr":0,"val/etpp_hd95":111.35251798310122,"train/loss":0.4035160653293133,"val/et":0.3480586530041301}
|
m3fecon18_fold1/wandb/run-20260715_100055-qijay3oy/logs/debug-core.log
ADDED
|
@@ -0,0 +1,19 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
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{"time":"2026-07-15T10:00:55.863808078+02:00","level":"INFO","msg":"main: starting server","port-filename":"/tmp/tmpaxjwvskb/port-941988.txt","pid":941988,"detached":false,"idle-timeout":600000000000,"log-level":0,"disable-analytics":false,"shutdown-on-parent-exit":false,"enable-dcgm-profiling":false}
|
| 2 |
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{"time":"2026-07-15T10:00:55.864339625+02:00","level":"INFO","msg":"server: accepting connections","addr":{"Name":"/tmp/wandb-941988-942092-3413640949/socket","Net":"unix"}}
|
| 3 |
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{"time":"2026-07-15T10:00:55.864428023+02:00","level":"INFO","msg":"server: will exit if parent process dies","ppid":941988}
|
| 4 |
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{"time":"2026-07-15T10:00:56.04385948+02:00","level":"INFO","msg":"connection: ManageConnectionData: new connection created","id":"1(@)"}
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| 5 |
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{"time":"2026-07-15T10:00:56.077151311+02:00","level":"INFO","msg":"handleInformInit: received","streamId":"qijay3oy","id":"1(@)"}
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| 6 |
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{"time":"2026-07-15T10:00:56.618727682+02:00","level":"INFO","msg":"handleInformInit: stream started","streamId":"qijay3oy","id":"1(@)"}
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| 7 |
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{"time":"2026-07-15T10:01:02.432199273+02:00","level":"INFO","msg":"connection: cancelling request","id":"1(@)","requestId":"sctibd5y09au"}
|
| 8 |
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{"time":"2026-07-15T21:08:04.282863992+02:00","level":"INFO","msg":"connection: cancelling request","id":"1(@)","requestId":"sctibd5y09au"}
|
| 9 |
+
{"time":"2026-07-15T21:08:06.07280583+02:00","level":"INFO","msg":"connection: cancelling request","id":"1(@)","requestId":"sctibd5y09au"}
|
| 10 |
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{"time":"2026-07-15T21:08:06.091979615+02:00","level":"INFO","msg":"handleInformFinish: finish message received","streamId":"qijay3oy","id":"1(@)"}
|
| 11 |
+
{"time":"2026-07-15T21:08:06.097357351+02:00","level":"INFO","msg":"handleInformFinish: stream closed","streamId":"qijay3oy","id":"1(@)"}
|
| 12 |
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{"time":"2026-07-15T21:08:06.247476996+02:00","level":"INFO","msg":"handleInformTeardown: server teardown initiated","id":"1(@)"}
|
| 13 |
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{"time":"2026-07-15T21:08:06.247514999+02:00","level":"INFO","msg":"handleInformTeardown: server shutdown complete","id":"1(@)"}
|
| 14 |
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{"time":"2026-07-15T21:08:06.247522408+02:00","level":"INFO","msg":"connection: closing","id":"1(@)"}
|
| 15 |
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{"time":"2026-07-15T21:08:06.247555014+02:00","level":"INFO","msg":"server is shutting down"}
|
| 16 |
+
{"time":"2026-07-15T21:08:06.247613566+02:00","level":"INFO","msg":"connection: closed successfully","id":"1(@)"}
|
| 17 |
+
{"time":"2026-07-15T21:08:06.247639679+02:00","level":"INFO","msg":"connection: ManageConnectionData: connection closed","id":"1(@)"}
|
| 18 |
+
{"time":"2026-07-15T21:08:06.247622671+02:00","level":"INFO","msg":"server: listener closed","addr":{"Name":"/tmp/wandb-941988-942092-3413640949/socket","Net":"unix"}}
|
| 19 |
+
{"time":"2026-07-15T21:08:06.247652824+02:00","level":"INFO","msg":"server is closed"}
|
m3fecon18_fold1/wandb/run-20260715_100055-qijay3oy/logs/debug-internal.log
ADDED
|
The diff for this file is too large to render.
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|
|
|
m3fecon18_fold1/wandb/run-20260715_100055-qijay3oy/logs/debug.log
ADDED
|
@@ -0,0 +1,23 @@
|
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|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
2026-07-15 10:00:55,746 INFO MainThread:941988 [wandb_setup.py:_flush():81] Current SDK version is 0.26.1
|
| 2 |
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2026-07-15 10:00:55,746 INFO MainThread:941988 [wandb_setup.py:_flush():81] Configure stats pid to 941988
|
| 3 |
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2026-07-15 10:00:55,746 INFO MainThread:941988 [wandb_setup.py:_flush():81] Loading settings from environment variables
|
| 4 |
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2026-07-15 10:00:55,747 INFO MainThread:941988 [wandb_init.py:setup_run_log_directory():723] Logging user logs to /work/phd_mimose/runs/m3fecon18_fold1/wandb/run-20260715_100055-qijay3oy/logs/debug.log
|
| 5 |
+
2026-07-15 10:00:55,748 INFO MainThread:941988 [wandb_init.py:setup_run_log_directory():724] Logging internal logs to /work/phd_mimose/runs/m3fecon18_fold1/wandb/run-20260715_100055-qijay3oy/logs/debug-internal.log
|
| 6 |
+
2026-07-15 10:00:55,748 INFO MainThread:941988 [wandb_init.py:init():850] calling init triggers
|
| 7 |
+
2026-07-15 10:00:55,748 INFO MainThread:941988 [wandb_init.py:init():855] wandb.init called with sweep_config: {}
|
| 8 |
+
config: {'input_dir': '/work/phd_mimose/m3fecon-preprocessed', 'output_dir': '/work/phd_mimose/runs/m3fecon18_fold1', 'num_epochs': 500, 'validation_every': 10, 'batch_size': 8, 'num_workers': 8, 'fp16': True, 'compile': False, 'seed': 0, 'custom_trainer_kwargs': {'iter_per_epoch': None, 'patch_size': 128, 'debug': False, 'transform_kind': 'imfuse', 'train_masking_mode': 'random', 'val_masking_mode': 'validation', 'split_file': '/homes/ocarpentiero/MiMoSe/src/mimose/data/splits/splits_5fold.json', 'fold': 1}, 'model_class': 'M3FeCon', 'model_kwargs': {'num_cls': 4}, 'optimizer_class': 'SGD', 'optimizer': {'lr': 0.01, 'weight_decay': 3e-05, 'betas': None, 'momentum': 0.99, 'eps': None}, 'loss_class': 'M3FeConLoss', 'loss_kwargs': {'num_classes': None, 'log_clamp_min': 0.005}, 'scheduler_class': 'PolynomialLR', 'scheduler_kwargs': {'total_iters': 500, 'power': 0.9}, 'push_to_hf': True, 'hf_repo': 'AImageLab-Zip/MiMoSe', 'dataset_type': <DatasetType.BRATS18: 'brats18'>, 'iter_per_epoch': None, 'patch_size': 128, 'debug': False, 'train_masking_mode': <MaskingMode.RANDOM: 'random'>, 'val_masking_mode': <MaskingMode.VALIDATION: 'validation'>, 'split_file': '/homes/ocarpentiero/MiMoSe/src/mimose/data/splits/splits_5fold.json', '_wandb': {}}
|
| 9 |
+
2026-07-15 10:00:55,748 INFO MainThread:941988 [wandb_init.py:init():898] starting backend
|
| 10 |
+
2026-07-15 10:00:56,044 INFO MainThread:941988 [wandb_init.py:init():913] sending inform_init request
|
| 11 |
+
2026-07-15 10:00:56,620 INFO MainThread:941988 [wandb_init.py:init():918] backend started and connected
|
| 12 |
+
2026-07-15 10:00:56,623 INFO MainThread:941988 [wandb_init.py:init():988] updated telemetry
|
| 13 |
+
2026-07-15 10:00:56,662 INFO MainThread:941988 [wandb_init.py:init():1011] communicating run to backend with 90.0 second timeout
|
| 14 |
+
2026-07-15 10:00:57,020 INFO MainThread:941988 [wandb_init.py:init():1056] starting run threads in backend
|
| 15 |
+
2026-07-15 10:00:57,421 INFO MainThread:941988 [wandb_run.py:_console_start():2554] atexit reg
|
| 16 |
+
2026-07-15 10:00:57,421 INFO MainThread:941988 [wandb_run.py:_redirect():2403] redirect: wrap_raw
|
| 17 |
+
2026-07-15 10:00:57,421 INFO MainThread:941988 [wandb_run.py:_redirect():2472] Wrapping output streams.
|
| 18 |
+
2026-07-15 10:00:57,422 INFO MainThread:941988 [wandb_run.py:_redirect():2495] Redirects installed.
|
| 19 |
+
2026-07-15 10:00:57,434 INFO MainThread:941988 [wandb_init.py:init():1094] run started, returning control to user process
|
| 20 |
+
2026-07-15 21:08:04,276 INFO MainThread:941988 [wandb_run.py:_finish():2321] finishing run homarone-unimore/MiMoSe/qijay3oy
|
| 21 |
+
2026-07-15 21:08:04,277 INFO MainThread:941988 [wandb_run.py:_atexit_cleanup():2520] got exitcode: 0
|
| 22 |
+
2026-07-15 21:08:04,281 INFO MainThread:941988 [wandb_run.py:_restore():2502] restore
|
| 23 |
+
2026-07-15 21:08:04,281 INFO MainThread:941988 [wandb_run.py:_restore():2508] restore done
|
m3fecon23_fold5/wandb/debug-internal.log
ADDED
|
@@ -0,0 +1,11 @@
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|
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|
|
|
|
|
|
| 1 |
+
{"time":"2026-07-19T13:35:09.171186525+02:00","level":"INFO","msg":"wandb-core"}
|
| 2 |
+
{"time":"2026-07-19T13:35:09.171202645+02:00","level":"INFO","msg":"stream: starting","core version":"0.26.1"}
|
| 3 |
+
{"time":"2026-07-19T13:35:10.104064478+02:00","level":"WARN","msg":"featurechecker: GraphQL client is nil, skipping feature loading"}
|
| 4 |
+
{"time":"2026-07-19T13:35:10.104098312+02:00","level":"WARN","msg":"featurechecker: GraphQL client is nil, skipping feature loading"}
|
| 5 |
+
{"time":"2026-07-19T13:35:10.104151922+02:00","level":"INFO","msg":"stream: created new stream","id":"8bjezyvy"}
|
| 6 |
+
{"time":"2026-07-19T13:35:10.104238488+02:00","level":"INFO","msg":"handler: started"}
|
| 7 |
+
{"time":"2026-07-19T13:35:10.108008439+02:00","level":"INFO","msg":"stream: started"}
|
| 8 |
+
{"time":"2026-07-19T13:35:10.108032497+02:00","level":"INFO","msg":"writer: started","stream_id":"8bjezyvy"}
|
| 9 |
+
{"time":"2026-07-19T13:35:10.1081191+02:00","level":"INFO","msg":"sender: started"}
|
| 10 |
+
{"time":"2026-07-19T13:35:10.193018253+02:00","level":"WARN","msg":"featurechecker: GraphQL client is nil, skipping feature loading"}
|
| 11 |
+
{"time":"2026-07-19T13:35:10.193051455+02:00","level":"WARN","msg":"runupserter: server does not expand metric globs but the x_server_side_expand_glob_metrics setting is set; ignoring"}
|
m3fecon23_fold5/wandb/debug.log
ADDED
|
@@ -0,0 +1,19 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
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|
|
|
|
| 1 |
+
2026-07-19 13:35:00,621 INFO MainThread:1591298 [wandb_setup.py:_flush():81] Current SDK version is 0.26.1
|
| 2 |
+
2026-07-19 13:35:00,621 INFO MainThread:1591298 [wandb_setup.py:_flush():81] Configure stats pid to 1591298
|
| 3 |
+
2026-07-19 13:35:00,621 INFO MainThread:1591298 [wandb_setup.py:_flush():81] Loading settings from environment variables
|
| 4 |
+
2026-07-19 13:35:00,623 INFO MainThread:1591298 [wandb_init.py:setup_run_log_directory():723] Logging user logs to /work/phd_mimose/runs/m3fecon23_fold5/wandb/offline-run-20260719_133500-8bjezyvy/logs/debug.log
|
| 5 |
+
2026-07-19 13:35:00,625 INFO MainThread:1591298 [wandb_init.py:setup_run_log_directory():724] Logging internal logs to /work/phd_mimose/runs/m3fecon23_fold5/wandb/offline-run-20260719_133500-8bjezyvy/logs/debug-internal.log
|
| 6 |
+
2026-07-19 13:35:00,625 INFO MainThread:1591298 [wandb_init.py:init():850] calling init triggers
|
| 7 |
+
2026-07-19 13:35:00,626 INFO MainThread:1591298 [wandb_init.py:init():855] wandb.init called with sweep_config: {}
|
| 8 |
+
config: {'input_dir': '/work/phd_mimose/m3fecon-preprocessed', 'output_dir': '/work/phd_mimose/runs/m3fecon23_fold5', 'num_epochs': 500, 'validation_every': 10, 'batch_size': 8, 'num_workers': 8, 'fp16': True, 'compile': False, 'seed': 0, 'custom_trainer_kwargs': {'iter_per_epoch': None, 'patch_size': 128, 'debug': False, 'transform_kind': 'imfuse', 'train_masking_mode': 'random', 'val_masking_mode': 'validation', 'split_file': '/homes/ecandeloro/MiMoSe/src/mimose/data/splits/splits_5fold.json', 'fold': 5}, 'model_class': 'M3FeCon', 'model_kwargs': {'num_cls': 4}, 'optimizer_class': 'SGD', 'optimizer': {'lr': 0.01, 'weight_decay': 3e-05, 'betas': None, 'momentum': 0.99, 'eps': None}, 'loss_class': 'M3FeConLoss', 'loss_kwargs': {'num_classes': None, 'log_clamp_min': 0.005}, 'scheduler_class': 'PolynomialLR', 'scheduler_kwargs': {'total_iters': 500, 'power': 0.9}, 'dataset_type': <DatasetType.BRATS23: 'brats23'>, 'iter_per_epoch': None, 'patch_size': 128, 'debug': False, 'train_masking_mode': <MaskingMode.RANDOM: 'random'>, 'val_masking_mode': <MaskingMode.VALIDATION: 'validation'>, 'split_file': '/homes/ecandeloro/MiMoSe/src/mimose/data/splits/splits_5fold.json', '_wandb': {}}
|
| 9 |
+
2026-07-19 13:35:00,626 INFO MainThread:1591298 [wandb_init.py:init():898] starting backend
|
| 10 |
+
2026-07-19 13:35:09,025 INFO MainThread:1591298 [wandb_init.py:init():913] sending inform_init request
|
| 11 |
+
2026-07-19 13:35:10,109 INFO MainThread:1591298 [wandb_init.py:init():918] backend started and connected
|
| 12 |
+
2026-07-19 13:35:10,113 INFO MainThread:1591298 [wandb_init.py:init():988] updated telemetry
|
| 13 |
+
2026-07-19 13:35:10,188 INFO MainThread:1591298 [wandb_init.py:init():1011] communicating run to backend with 90.0 second timeout
|
| 14 |
+
2026-07-19 13:35:10,196 INFO MainThread:1591298 [wandb_init.py:init():1056] starting run threads in backend
|
| 15 |
+
2026-07-19 13:35:11,070 INFO MainThread:1591298 [wandb_run.py:_console_start():2554] atexit reg
|
| 16 |
+
2026-07-19 13:35:11,070 INFO MainThread:1591298 [wandb_run.py:_redirect():2403] redirect: wrap_raw
|
| 17 |
+
2026-07-19 13:35:11,070 INFO MainThread:1591298 [wandb_run.py:_redirect():2472] Wrapping output streams.
|
| 18 |
+
2026-07-19 13:35:11,070 INFO MainThread:1591298 [wandb_run.py:_redirect():2495] Redirects installed.
|
| 19 |
+
2026-07-19 13:35:11,105 INFO MainThread:1591298 [wandb_init.py:init():1094] run started, returning control to user process
|
m3fecon23_fold5/wandb/offline-run-20260719_133500-8bjezyvy/files/requirements.txt
ADDED
|
@@ -0,0 +1,116 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
hf-xet==1.4.3
|
| 2 |
+
prompt_toolkit==3.0.52
|
| 3 |
+
smmap==5.0.3
|
| 4 |
+
safetensors==0.7.0
|
| 5 |
+
pyparsing==3.3.2
|
| 6 |
+
torchvision==0.24.1
|
| 7 |
+
nvidia-cuda-nvrtc-cu12==12.8.93
|
| 8 |
+
httpcore==1.0.9
|
| 9 |
+
ninja==1.13.0
|
| 10 |
+
certifi==2026.4.22
|
| 11 |
+
cycler==0.12.1
|
| 12 |
+
setuptools==82.0.1
|
| 13 |
+
urllib3==2.6.3
|
| 14 |
+
torch_c_dlpack_ext==0.1.5
|
| 15 |
+
networkx==3.6.1
|
| 16 |
+
gitdb==4.0.12
|
| 17 |
+
cuda-bindings==13.3.1
|
| 18 |
+
protobuf==6.33.6
|
| 19 |
+
apache-tvm-ffi==0.1.9
|
| 20 |
+
charset-normalizer==3.4.7
|
| 21 |
+
sympy==1.14.0
|
| 22 |
+
Pygments==2.20.0
|
| 23 |
+
thop==0.1.1-2209072238
|
| 24 |
+
fonttools==4.62.1
|
| 25 |
+
filelock==3.29.0
|
| 26 |
+
nvidia-cuda-cupti-cu12==12.8.90
|
| 27 |
+
nvidia-cusparselt-cu12==0.7.1
|
| 28 |
+
typer==0.25.0
|
| 29 |
+
annotated-types==0.7.0
|
| 30 |
+
mamba-ssm==2.3.2.post1
|
| 31 |
+
timm==1.0.22
|
| 32 |
+
scikit-learn==1.8.0
|
| 33 |
+
nvidia-cutlass-dsl==4.6.0
|
| 34 |
+
wheel==0.47.0
|
| 35 |
+
cuda-pathfinder==1.5.6
|
| 36 |
+
nvidia-curand-cu12==10.3.9.90
|
| 37 |
+
cuda-python==13.3.1
|
| 38 |
+
anyio==4.13.0
|
| 39 |
+
packaging==26.2
|
| 40 |
+
nvidia-cuda-runtime-cu12==12.8.90
|
| 41 |
+
MarkupSafe==3.0.3
|
| 42 |
+
PyYAML==6.0.3
|
| 43 |
+
nvidia-cutlass-dsl-libs-base==4.6.0
|
| 44 |
+
torch==2.9.1
|
| 45 |
+
tilelang==0.1.8
|
| 46 |
+
nvidia-nvjitlink-cu12==12.8.93
|
| 47 |
+
ttkbootstrap==1.20.2
|
| 48 |
+
six==1.17.0
|
| 49 |
+
annotated-doc==0.0.4
|
| 50 |
+
pydantic_core==2.46.3
|
| 51 |
+
typing_extensions==4.15.0
|
| 52 |
+
Jinja2==3.1.6
|
| 53 |
+
nvidia-cublas-cu12==12.8.4.1
|
| 54 |
+
mdurl==0.1.2
|
| 55 |
+
et_xmlfile==2.0.0
|
| 56 |
+
nvidia-nccl-cu12==2.27.5
|
| 57 |
+
ml_dtypes==0.5.4
|
| 58 |
+
wcwidth==0.6.0
|
| 59 |
+
click==8.3.3
|
| 60 |
+
z3-solver==4.15.4.0
|
| 61 |
+
shellingham==1.5.4
|
| 62 |
+
dynamic_network_architectures==0.4.3
|
| 63 |
+
pillow==12.2.0
|
| 64 |
+
nvidia-cutlass-dsl-libs-cu12==4.6.0
|
| 65 |
+
markdown-it-py==4.0.0
|
| 66 |
+
nvidia-nvtx-cu12==12.8.90
|
| 67 |
+
causal-conv1d==1.6.2.post1
|
| 68 |
+
pydantic==2.13.3
|
| 69 |
+
h11==0.16.0
|
| 70 |
+
nvidia-cudnn-cu12==9.10.2.21
|
| 71 |
+
nvidia-cufft-cu12==11.3.3.83
|
| 72 |
+
requests==2.33.1
|
| 73 |
+
rich==15.0.0
|
| 74 |
+
psutil==7.2.2
|
| 75 |
+
nvidia-cusparse-cu12==12.5.8.93
|
| 76 |
+
typing-inspection==0.4.2
|
| 77 |
+
transformers==5.12.1
|
| 78 |
+
nodeocc==1.0.26
|
| 79 |
+
numpy==2.4.4
|
| 80 |
+
nvidia-cufile-cu12==1.13.1.3
|
| 81 |
+
cloudpickle==3.1.2
|
| 82 |
+
pandas==3.0.2
|
| 83 |
+
scipy==1.17.1
|
| 84 |
+
tqdm==4.67.3
|
| 85 |
+
platformdirs==4.9.6
|
| 86 |
+
nvidia-cutlass-dsl-libs-core==4.6.0
|
| 87 |
+
joblib==1.5.3
|
| 88 |
+
quack-kernels==0.6.0
|
| 89 |
+
regex==2026.6.28
|
| 90 |
+
kiwisolver==1.5.0
|
| 91 |
+
python-dateutil==2.9.0.post0
|
| 92 |
+
tokenizers==0.22.2
|
| 93 |
+
einops==0.8.2
|
| 94 |
+
contourpy==1.3.3
|
| 95 |
+
MiMoSe==0.0.2
|
| 96 |
+
triton==3.5.1
|
| 97 |
+
ptflops==0.7.5
|
| 98 |
+
mpmath==1.3.0
|
| 99 |
+
openpyxl==3.1.5
|
| 100 |
+
GitPython==3.1.49
|
| 101 |
+
idna==3.13
|
| 102 |
+
fsspec==2026.4.0
|
| 103 |
+
MedPy==0.5.2
|
| 104 |
+
nvidia-cuda-nvdisasm==13.3.73
|
| 105 |
+
httpx==0.28.1
|
| 106 |
+
sentry-sdk==2.58.0
|
| 107 |
+
cuda-core==1.0.1
|
| 108 |
+
threadpoolctl==3.6.0
|
| 109 |
+
h5py==3.16.0
|
| 110 |
+
nvidia-nvshmem-cu12==3.3.20
|
| 111 |
+
wandb==0.26.1
|
| 112 |
+
huggingface_hub==1.13.0
|
| 113 |
+
nvidia-cusolver-cu12==11.7.3.90
|
| 114 |
+
matplotlib==3.10.9
|
| 115 |
+
simpleitk==2.5.4
|
| 116 |
+
MiMoSe==0.0.2
|
m3fecon23_fold5/wandb/offline-run-20260719_133500-8bjezyvy/logs/debug-core.log
ADDED
|
@@ -0,0 +1,13 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{"time":"2026-07-19T13:35:08.924713296+02:00","level":"INFO","msg":"main: starting server","port-filename":"/tmp/tmp54oknibu/port-1591561.txt","pid":1591561,"detached":false,"idle-timeout":600000000000,"log-level":0,"disable-analytics":false,"shutdown-on-parent-exit":false,"enable-dcgm-profiling":false}
|
| 2 |
+
{"time":"2026-07-19T13:35:08.925225027+02:00","level":"INFO","msg":"main: starting server","port-filename":"/tmp/tmplxlmtigv/port-1591298.txt","pid":1591298,"detached":false,"idle-timeout":600000000000,"log-level":0,"disable-analytics":false,"shutdown-on-parent-exit":false,"enable-dcgm-profiling":false}
|
| 3 |
+
{"time":"2026-07-19T13:35:08.961689128+02:00","level":"INFO","msg":"server: will exit if parent process dies","ppid":1591561}
|
| 4 |
+
{"time":"2026-07-19T13:35:08.961777427+02:00","level":"INFO","msg":"server: will exit if parent process dies","ppid":1591298}
|
| 5 |
+
{"time":"2026-07-19T13:35:08.961681079+02:00","level":"INFO","msg":"server: accepting connections","addr":{"Name":"/tmp/wandb-1591561-1591872-1274513823/socket","Net":"unix"}}
|
| 6 |
+
{"time":"2026-07-19T13:35:08.961738027+02:00","level":"INFO","msg":"server: accepting connections","addr":{"Name":"/tmp/wandb-1591298-1591873-2596088302/socket","Net":"unix"}}
|
| 7 |
+
{"time":"2026-07-19T13:35:09.023160731+02:00","level":"INFO","msg":"connection: ManageConnectionData: new connection created","id":"1(@)"}
|
| 8 |
+
{"time":"2026-07-19T13:35:09.024782294+02:00","level":"INFO","msg":"connection: ManageConnectionData: new connection created","id":"1(@)"}
|
| 9 |
+
{"time":"2026-07-19T13:35:09.166585853+02:00","level":"INFO","msg":"handleInformInit: received","streamId":"8bjezyvy","id":"1(@)"}
|
| 10 |
+
{"time":"2026-07-19T13:35:09.167879763+02:00","level":"INFO","msg":"handleInformInit: received","streamId":"wecg4h0p","id":"1(@)"}
|
| 11 |
+
{"time":"2026-07-19T13:35:10.036721467+02:00","level":"INFO","msg":"handleInformInit: stream started","streamId":"wecg4h0p","id":"1(@)"}
|
| 12 |
+
{"time":"2026-07-19T13:35:10.108020273+02:00","level":"INFO","msg":"handleInformInit: stream started","streamId":"8bjezyvy","id":"1(@)"}
|
| 13 |
+
ime":"2026-07-19T13:35:10.06750142+02:00","level":"INFO","msg":"connection: cancelling request","id":"1(@)","requestId":"tkudx2qf9iqn"}
|
m3fecon23_fold5/wandb/offline-run-20260719_133500-8bjezyvy/logs/debug-internal.log
ADDED
|
@@ -0,0 +1,11 @@
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|
| 1 |
+
{"time":"2026-07-19T13:35:09.171186525+02:00","level":"INFO","msg":"wandb-core"}
|
| 2 |
+
{"time":"2026-07-19T13:35:09.171202645+02:00","level":"INFO","msg":"stream: starting","core version":"0.26.1"}
|
| 3 |
+
{"time":"2026-07-19T13:35:10.104064478+02:00","level":"WARN","msg":"featurechecker: GraphQL client is nil, skipping feature loading"}
|
| 4 |
+
{"time":"2026-07-19T13:35:10.104098312+02:00","level":"WARN","msg":"featurechecker: GraphQL client is nil, skipping feature loading"}
|
| 5 |
+
{"time":"2026-07-19T13:35:10.104151922+02:00","level":"INFO","msg":"stream: created new stream","id":"8bjezyvy"}
|
| 6 |
+
{"time":"2026-07-19T13:35:10.104238488+02:00","level":"INFO","msg":"handler: started"}
|
| 7 |
+
{"time":"2026-07-19T13:35:10.108008439+02:00","level":"INFO","msg":"stream: started"}
|
| 8 |
+
{"time":"2026-07-19T13:35:10.108032497+02:00","level":"INFO","msg":"writer: started","stream_id":"8bjezyvy"}
|
| 9 |
+
{"time":"2026-07-19T13:35:10.1081191+02:00","level":"INFO","msg":"sender: started"}
|
| 10 |
+
{"time":"2026-07-19T13:35:10.193018253+02:00","level":"WARN","msg":"featurechecker: GraphQL client is nil, skipping feature loading"}
|
| 11 |
+
{"time":"2026-07-19T13:35:10.193051455+02:00","level":"WARN","msg":"runupserter: server does not expand metric globs but the x_server_side_expand_glob_metrics setting is set; ignoring"}
|
m3fecon23_fold5/wandb/offline-run-20260719_133500-8bjezyvy/logs/debug.log
ADDED
|
@@ -0,0 +1,19 @@
|
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|
| 1 |
+
2026-07-19 13:35:00,621 INFO MainThread:1591298 [wandb_setup.py:_flush():81] Current SDK version is 0.26.1
|
| 2 |
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2026-07-19 13:35:00,621 INFO MainThread:1591298 [wandb_setup.py:_flush():81] Configure stats pid to 1591298
|
| 3 |
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2026-07-19 13:35:00,621 INFO MainThread:1591298 [wandb_setup.py:_flush():81] Loading settings from environment variables
|
| 4 |
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2026-07-19 13:35:00,623 INFO MainThread:1591298 [wandb_init.py:setup_run_log_directory():723] Logging user logs to /work/phd_mimose/runs/m3fecon23_fold5/wandb/offline-run-20260719_133500-8bjezyvy/logs/debug.log
|
| 5 |
+
2026-07-19 13:35:00,625 INFO MainThread:1591298 [wandb_init.py:setup_run_log_directory():724] Logging internal logs to /work/phd_mimose/runs/m3fecon23_fold5/wandb/offline-run-20260719_133500-8bjezyvy/logs/debug-internal.log
|
| 6 |
+
2026-07-19 13:35:00,625 INFO MainThread:1591298 [wandb_init.py:init():850] calling init triggers
|
| 7 |
+
2026-07-19 13:35:00,626 INFO MainThread:1591298 [wandb_init.py:init():855] wandb.init called with sweep_config: {}
|
| 8 |
+
config: {'input_dir': '/work/phd_mimose/m3fecon-preprocessed', 'output_dir': '/work/phd_mimose/runs/m3fecon23_fold5', 'num_epochs': 500, 'validation_every': 10, 'batch_size': 8, 'num_workers': 8, 'fp16': True, 'compile': False, 'seed': 0, 'custom_trainer_kwargs': {'iter_per_epoch': None, 'patch_size': 128, 'debug': False, 'transform_kind': 'imfuse', 'train_masking_mode': 'random', 'val_masking_mode': 'validation', 'split_file': '/homes/ecandeloro/MiMoSe/src/mimose/data/splits/splits_5fold.json', 'fold': 5}, 'model_class': 'M3FeCon', 'model_kwargs': {'num_cls': 4}, 'optimizer_class': 'SGD', 'optimizer': {'lr': 0.01, 'weight_decay': 3e-05, 'betas': None, 'momentum': 0.99, 'eps': None}, 'loss_class': 'M3FeConLoss', 'loss_kwargs': {'num_classes': None, 'log_clamp_min': 0.005}, 'scheduler_class': 'PolynomialLR', 'scheduler_kwargs': {'total_iters': 500, 'power': 0.9}, 'dataset_type': <DatasetType.BRATS23: 'brats23'>, 'iter_per_epoch': None, 'patch_size': 128, 'debug': False, 'train_masking_mode': <MaskingMode.RANDOM: 'random'>, 'val_masking_mode': <MaskingMode.VALIDATION: 'validation'>, 'split_file': '/homes/ecandeloro/MiMoSe/src/mimose/data/splits/splits_5fold.json', '_wandb': {}}
|
| 9 |
+
2026-07-19 13:35:00,626 INFO MainThread:1591298 [wandb_init.py:init():898] starting backend
|
| 10 |
+
2026-07-19 13:35:09,025 INFO MainThread:1591298 [wandb_init.py:init():913] sending inform_init request
|
| 11 |
+
2026-07-19 13:35:10,109 INFO MainThread:1591298 [wandb_init.py:init():918] backend started and connected
|
| 12 |
+
2026-07-19 13:35:10,113 INFO MainThread:1591298 [wandb_init.py:init():988] updated telemetry
|
| 13 |
+
2026-07-19 13:35:10,188 INFO MainThread:1591298 [wandb_init.py:init():1011] communicating run to backend with 90.0 second timeout
|
| 14 |
+
2026-07-19 13:35:10,196 INFO MainThread:1591298 [wandb_init.py:init():1056] starting run threads in backend
|
| 15 |
+
2026-07-19 13:35:11,070 INFO MainThread:1591298 [wandb_run.py:_console_start():2554] atexit reg
|
| 16 |
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2026-07-19 13:35:11,070 INFO MainThread:1591298 [wandb_run.py:_redirect():2403] redirect: wrap_raw
|
| 17 |
+
2026-07-19 13:35:11,070 INFO MainThread:1591298 [wandb_run.py:_redirect():2472] Wrapping output streams.
|
| 18 |
+
2026-07-19 13:35:11,070 INFO MainThread:1591298 [wandb_run.py:_redirect():2495] Redirects installed.
|
| 19 |
+
2026-07-19 13:35:11,105 INFO MainThread:1591298 [wandb_init.py:init():1094] run started, returning control to user process
|
mcpl18_fold1/wandb/debug-internal.log
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
mcpl18_fold1/wandb/debug.log
ADDED
|
@@ -0,0 +1,23 @@
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|
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|
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|
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|
|
|
|
|
|
|
|
| 1 |
+
2026-07-15 16:47:27,664 INFO MainThread:1289977 [wandb_setup.py:_flush():81] Current SDK version is 0.26.1
|
| 2 |
+
2026-07-15 16:47:27,665 INFO MainThread:1289977 [wandb_setup.py:_flush():81] Configure stats pid to 1289977
|
| 3 |
+
2026-07-15 16:47:27,665 INFO MainThread:1289977 [wandb_setup.py:_flush():81] Loading settings from environment variables
|
| 4 |
+
2026-07-15 16:47:27,666 INFO MainThread:1289977 [wandb_init.py:setup_run_log_directory():723] Logging user logs to /work/phd_mimose/runs/mcpl18_fold1/wandb/run-20260715_164718-81anxg9k/logs/debug.log
|
| 5 |
+
2026-07-15 16:47:27,667 INFO MainThread:1289977 [wandb_init.py:setup_run_log_directory():724] Logging internal logs to /work/phd_mimose/runs/mcpl18_fold1/wandb/run-20260715_164718-81anxg9k/logs/debug-internal.log
|
| 6 |
+
2026-07-15 16:47:27,667 INFO MainThread:1289977 [wandb_init.py:init():850] calling init triggers
|
| 7 |
+
2026-07-15 16:47:27,667 INFO MainThread:1289977 [wandb_init.py:init():855] wandb.init called with sweep_config: {}
|
| 8 |
+
config: {'input_dir': '/work/phd_mimose/mcpl-preprocessed', 'output_dir': '/work/phd_mimose/runs/mcpl18_fold1', 'num_epochs': 1100, 'validation_every': 10, 'batch_size': 8, 'num_workers': 8, 'fp16': False, 'compile': False, 'seed': 0, 'custom_trainer_kwargs': {'iter_per_epoch': None, 'patch_size': 128, 'debug': False, 'transform_kind': 'imfuse', 'train_masking_mode': 'random', 'val_masking_mode': 'validation', 'pretrain_fraction': 0.5454545454545454, 'limage_lr': 0.005, 'deep_supervised': True, 'consistency_weight': 0.1, 'class_contrast_weight': 0.01, 'modal_contrast_weight': 0.01, 'cc_modalities': 4, 'split_file': '/homes/ocarpentiero/MiMoSe/src/mimose/data/splits/splits_5fold.json', 'fold': 1}, 'model_class': 'MCPL', 'model_kwargs': {'num_cls': 4, 'cc_modalities': 4, 'layers': 6}, 'optimizer_class': 'Adam', 'optimizer': {'lr': 0.0012, 'weight_decay': 0.0001, 'betas': (0.9, 0.999), 'momentum': None, 'eps': 1e-08}, 'loss_class': 'MCPLLoss', 'loss_kwargs': {'num_classes': None, 'log_clamp_min': 0.005}, 'scheduler_class': 'CosineAnnealingLR', 'scheduler_kwargs': {'T_max': 600, 'eta_min': 0.0}, 'push_to_hf': True, 'hf_repo': 'AImageLab-Zip/MiMoSe', 'dataset_type': <DatasetType.BRATS18: 'brats18'>, 'iter_per_epoch': None, 'patch_size': 128, 'debug': False, 'train_masking_mode': <MaskingMode.RANDOM: 'random'>, 'val_masking_mode': <MaskingMode.VALIDATION: 'validation'>, 'split_file': '/homes/ocarpentiero/MiMoSe/src/mimose/data/splits/splits_5fold.json', '_wandb': {}}
|
| 9 |
+
2026-07-15 16:47:27,667 INFO MainThread:1289977 [wandb_init.py:init():898] starting backend
|
| 10 |
+
2026-07-15 16:47:27,970 INFO MainThread:1289977 [wandb_init.py:init():913] sending inform_init request
|
| 11 |
+
2026-07-15 16:47:28,342 INFO MainThread:1289977 [wandb_init.py:init():918] backend started and connected
|
| 12 |
+
2026-07-15 16:47:28,346 INFO MainThread:1289977 [wandb_init.py:init():988] updated telemetry
|
| 13 |
+
2026-07-15 16:47:28,387 INFO MainThread:1289977 [wandb_init.py:init():1011] communicating run to backend with 90.0 second timeout
|
| 14 |
+
2026-07-15 16:47:28,886 INFO MainThread:1289977 [wandb_init.py:init():1056] starting run threads in backend
|
| 15 |
+
2026-07-15 16:47:29,238 INFO MainThread:1289977 [wandb_run.py:_console_start():2554] atexit reg
|
| 16 |
+
2026-07-15 16:47:29,238 INFO MainThread:1289977 [wandb_run.py:_redirect():2403] redirect: wrap_raw
|
| 17 |
+
2026-07-15 16:47:29,238 INFO MainThread:1289977 [wandb_run.py:_redirect():2472] Wrapping output streams.
|
| 18 |
+
2026-07-15 16:47:29,238 INFO MainThread:1289977 [wandb_run.py:_redirect():2495] Redirects installed.
|
| 19 |
+
2026-07-15 16:47:29,247 INFO MainThread:1289977 [wandb_init.py:init():1094] run started, returning control to user process
|
| 20 |
+
2026-07-15 21:53:39,888 INFO MainThread:1289977 [wandb_run.py:_finish():2321] finishing run homarone-unimore/MiMoSe/81anxg9k
|
| 21 |
+
2026-07-15 21:53:39,889 INFO MainThread:1289977 [wandb_run.py:_atexit_cleanup():2520] got exitcode: 0
|
| 22 |
+
2026-07-15 21:53:39,899 INFO MainThread:1289977 [wandb_run.py:_restore():2502] restore
|
| 23 |
+
2026-07-15 21:53:39,899 INFO MainThread:1289977 [wandb_run.py:_restore():2508] restore done
|
mcpl18_fold1/wandb/run-20260715_164718-81anxg9k/files/requirements.txt
ADDED
|
@@ -0,0 +1,124 @@
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|
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|
|
|
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|
|
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|
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|
|
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|
|
|
|
|
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|
|
|
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|
|
|
|
|
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|
|
|
|
|
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|
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|
|
|
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|
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|
|
|
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|
|
|
|
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|
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|
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|
|
|
|
|
|
|
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|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
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|
|
|
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|
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|
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|
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|
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|
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|
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|
|
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|
|
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|
|
|
|
|
|
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|
|
|
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|
|
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|
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|
|
|
|
|
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|
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|
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|
|
|
|
|
|
|
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|
|
|
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|
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|
|
| 1 |
+
six==1.17.0
|
| 2 |
+
nvidia-cutlass-dsl==4.6.0
|
| 3 |
+
et_xmlfile==2.0.0
|
| 4 |
+
certifi==2026.4.22
|
| 5 |
+
nvidia-nccl-cu12==2.27.5
|
| 6 |
+
regex==2026.6.28
|
| 7 |
+
ml_dtypes==0.5.4
|
| 8 |
+
simpleitk==2.5.4
|
| 9 |
+
kiwisolver==1.5.0
|
| 10 |
+
idna==3.13
|
| 11 |
+
annotated-types==0.7.0
|
| 12 |
+
nvidia-cutlass-dsl-libs-cu12==4.6.0
|
| 13 |
+
cycler==0.12.1
|
| 14 |
+
ptflops==0.7.5
|
| 15 |
+
typing-inspection==0.4.2
|
| 16 |
+
ninja==1.13.0
|
| 17 |
+
nvidia-cufile-cu12==1.13.1.3
|
| 18 |
+
nvidia-cuda-nvrtc-cu12==12.8.93
|
| 19 |
+
cloudpickle==3.1.2
|
| 20 |
+
python-dateutil==2.9.0.post0
|
| 21 |
+
tokenizers==0.22.2
|
| 22 |
+
packaging==26.2
|
| 23 |
+
wcwidth==0.6.0
|
| 24 |
+
safetensors==0.7.0
|
| 25 |
+
torch_c_dlpack_ext==0.1.5
|
| 26 |
+
mdurl==0.1.2
|
| 27 |
+
click==8.3.3
|
| 28 |
+
Jinja2==3.1.6
|
| 29 |
+
dynamic_network_architectures==0.4.3
|
| 30 |
+
contourpy==1.3.3
|
| 31 |
+
pydantic_core==2.46.3
|
| 32 |
+
nvidia-curand-cu12==10.3.9.90
|
| 33 |
+
PyYAML==6.0.3
|
| 34 |
+
GitPython==3.1.49
|
| 35 |
+
gitdb==4.0.12
|
| 36 |
+
nvidia-cusparselt-cu12==0.7.1
|
| 37 |
+
nvidia-cusparse-cu12==12.5.8.93
|
| 38 |
+
z3-solver==4.15.4.0
|
| 39 |
+
nvidia-nvtx-cu12==12.8.90
|
| 40 |
+
nvidia-nvjitlink-cu12==12.8.93
|
| 41 |
+
nvidia-cufft-cu12==11.3.3.83
|
| 42 |
+
httpcore==1.0.9
|
| 43 |
+
cuda-python==13.3.1
|
| 44 |
+
MiMoSe==0.0.2
|
| 45 |
+
nvidia-cublas-cu12==12.8.4.1
|
| 46 |
+
nodeocc==1.0.26
|
| 47 |
+
MarkupSafe==3.0.3
|
| 48 |
+
timm==1.0.22
|
| 49 |
+
charset-normalizer==3.4.7
|
| 50 |
+
thop==0.1.1-2209072238
|
| 51 |
+
shellingham==1.5.4
|
| 52 |
+
threadpoolctl==3.6.0
|
| 53 |
+
anyio==4.13.0
|
| 54 |
+
nvidia-cudnn-cu12==9.10.2.21
|
| 55 |
+
smmap==5.0.3
|
| 56 |
+
nvidia-cuda-cupti-cu12==12.8.90
|
| 57 |
+
nvidia-cuda-nvdisasm==13.3.73
|
| 58 |
+
typer==0.25.0
|
| 59 |
+
typing_extensions==4.15.0
|
| 60 |
+
causal-conv1d==1.6.2.post1
|
| 61 |
+
requests==2.33.1
|
| 62 |
+
mamba-ssm==2.3.2.post1
|
| 63 |
+
psutil==7.2.2
|
| 64 |
+
filelock==3.29.0
|
| 65 |
+
httpx==0.28.1
|
| 66 |
+
nvidia-cusolver-cu12==11.7.3.90
|
| 67 |
+
markdown-it-py==4.0.0
|
| 68 |
+
urllib3==2.6.3
|
| 69 |
+
h11==0.16.0
|
| 70 |
+
nvidia-nvshmem-cu12==3.3.20
|
| 71 |
+
pyparsing==3.3.2
|
| 72 |
+
annotated-doc==0.0.4
|
| 73 |
+
hf-xet==1.4.3
|
| 74 |
+
cuda-pathfinder==1.5.6
|
| 75 |
+
platformdirs==4.9.6
|
| 76 |
+
MedPy==0.5.2
|
| 77 |
+
einops==0.8.2
|
| 78 |
+
wheel==0.47.0
|
| 79 |
+
tqdm==4.67.3
|
| 80 |
+
h5py==3.16.0
|
| 81 |
+
protobuf==6.33.6
|
| 82 |
+
nvidia-cuda-runtime-cu12==12.8.90
|
| 83 |
+
fsspec==2026.4.0
|
| 84 |
+
ttkbootstrap==1.20.2
|
| 85 |
+
nvidia-cutlass-dsl-libs-base==4.6.0
|
| 86 |
+
mpmath==1.3.0
|
| 87 |
+
rich==15.0.0
|
| 88 |
+
pillow==12.2.0
|
| 89 |
+
cuda-bindings==13.3.1
|
| 90 |
+
quack-kernels==0.6.0
|
| 91 |
+
prompt_toolkit==3.0.52
|
| 92 |
+
joblib==1.5.3
|
| 93 |
+
pydantic==2.13.3
|
| 94 |
+
nvidia-cutlass-dsl-libs-core==4.6.0
|
| 95 |
+
openpyxl==3.1.5
|
| 96 |
+
huggingface_hub==1.13.0
|
| 97 |
+
torchvision==0.24.1
|
| 98 |
+
sentry-sdk==2.58.0
|
| 99 |
+
cuda-core==1.0.1
|
| 100 |
+
apache-tvm-ffi==0.1.9
|
| 101 |
+
wandb==0.26.1
|
| 102 |
+
fonttools==4.62.1
|
| 103 |
+
Pygments==2.20.0
|
| 104 |
+
triton==3.5.1
|
| 105 |
+
setuptools==82.0.1
|
| 106 |
+
networkx==3.6.1
|
| 107 |
+
matplotlib==3.10.9
|
| 108 |
+
numpy==2.4.4
|
| 109 |
+
scikit-learn==1.8.0
|
| 110 |
+
scipy==1.17.1
|
| 111 |
+
pandas==3.0.2
|
| 112 |
+
sympy==1.14.0
|
| 113 |
+
transformers==5.12.1
|
| 114 |
+
tilelang==0.1.8
|
| 115 |
+
torch==2.9.1
|
| 116 |
+
mypy_extensions==1.1.0
|
| 117 |
+
iniconfig==2.3.0
|
| 118 |
+
pluggy==1.6.0
|
| 119 |
+
ruff==0.15.12
|
| 120 |
+
librt==0.9.0
|
| 121 |
+
pathspec==1.1.1
|
| 122 |
+
pytest==9.0.3
|
| 123 |
+
mypy==1.20.2
|
| 124 |
+
MiMoSe==0.0.2
|
mcpl18_fold1/wandb/run-20260715_164718-81anxg9k/files/wandb-metadata.json
ADDED
|
@@ -0,0 +1,107 @@
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
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|
|
|
|
|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"os": "Linux-5.15.0-181-generic-x86_64-with-glibc2.35",
|
| 3 |
+
"python": "CPython 3.12.13",
|
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"startedAt": "2026-07-15T14:47:18.354488Z",
|
| 5 |
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"args": [
|
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+
"train",
|
| 7 |
+
"--config",
|
| 8 |
+
"mcpl_18.yaml",
|
| 9 |
+
"--fold",
|
| 10 |
+
"1",
|
| 11 |
+
"--run-suffix",
|
| 12 |
+
"fold1",
|
| 13 |
+
"--seed",
|
| 14 |
+
"0",
|
| 15 |
+
"--try-resume"
|
| 16 |
+
],
|
| 17 |
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"program": "/homes/ocarpentiero/MiMoSe/.venv/bin/mimose",
|
| 18 |
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"codePath": ".venv/bin/mimose",
|
| 19 |
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"codePathLocal": ".venv/bin/mimose",
|
| 20 |
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"git": {
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| 21 |
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| 23 |
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},
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| 24 |
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"root": "/work/phd_mimose/runs/mcpl18_fold1",
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"host": "franco",
|
| 26 |
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"executable": "/homes/ocarpentiero/MiMoSe/.venv/bin/python3",
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| 27 |
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"cpu_count": 24,
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"gpu": "NVIDIA L40S",
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"/": {
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{
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],
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| 49 |
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"cudaVersion": "13.2",
|
| 50 |
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"slurm": {
|
| 51 |
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"cluster_name": "aimagelab",
|
| 52 |
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"conf": "/etc/slurm/slurm.conf",
|
| 53 |
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|
| 54 |
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| 55 |
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| 56 |
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| 57 |
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"job_account": "phd_mimose",
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| 61 |
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"job_end_time": "1784213212",
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| 62 |
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| 63 |
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"job_gpus": "0",
|
| 64 |
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"job_id": "66691",
|
| 65 |
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"job_name": "MCPL18_FOLD_1",
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| 66 |
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"job_nodelist": "franco",
|
| 67 |
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"job_num_nodes": "1",
|
| 68 |
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"job_partition": "boost_usr_prod",
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| 69 |
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"job_qos": "normal",
|
| 70 |
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"job_start_time": "1784126812",
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| 71 |
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"job_uid": "92375",
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| 72 |
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"job_user": "ocarpentiero",
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| 73 |
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"launch_node_ipaddr": "155.185.49.58",
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| 77 |
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| 78 |
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| 80 |
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| 81 |
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| 84 |
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"submit_dir": "/homes/ocarpentiero/MiMoSe",
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}
|
mcpl18_fold1/wandb/run-20260715_164718-81anxg9k/logs/debug-core.log
ADDED
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@@ -0,0 +1,19 @@
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{"time":"2026-07-15T16:47:34.247498828+02:00","level":"INFO","msg":"connection: cancelling request","id":"1(@)","requestId":"vfn1tb1yoaj4"}
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{"time":"2026-07-15T21:53:48.453546208+02:00","level":"INFO","msg":"connection: cancelling request","id":"1(@)","requestId":"vfn1tb1yoaj4"}
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| 16 |
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| 17 |
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| 19 |
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mcpl18_fold1/wandb/run-20260715_164718-81anxg9k/logs/debug.log
ADDED
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@@ -0,0 +1,23 @@
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|
| 1 |
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2026-07-15 16:47:27,664 INFO MainThread:1289977 [wandb_setup.py:_flush():81] Current SDK version is 0.26.1
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2026-07-15 16:47:27,665 INFO MainThread:1289977 [wandb_setup.py:_flush():81] Configure stats pid to 1289977
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2026-07-15 16:47:27,665 INFO MainThread:1289977 [wandb_setup.py:_flush():81] Loading settings from environment variables
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|
| 5 |
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2026-07-15 16:47:27,667 INFO MainThread:1289977 [wandb_init.py:setup_run_log_directory():724] Logging internal logs to /work/phd_mimose/runs/mcpl18_fold1/wandb/run-20260715_164718-81anxg9k/logs/debug-internal.log
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| 6 |
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2026-07-15 16:47:27,667 INFO MainThread:1289977 [wandb_init.py:init():850] calling init triggers
|
| 7 |
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2026-07-15 16:47:27,667 INFO MainThread:1289977 [wandb_init.py:init():855] wandb.init called with sweep_config: {}
|
| 8 |
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config: {'input_dir': '/work/phd_mimose/mcpl-preprocessed', 'output_dir': '/work/phd_mimose/runs/mcpl18_fold1', 'num_epochs': 1100, 'validation_every': 10, 'batch_size': 8, 'num_workers': 8, 'fp16': False, 'compile': False, 'seed': 0, 'custom_trainer_kwargs': {'iter_per_epoch': None, 'patch_size': 128, 'debug': False, 'transform_kind': 'imfuse', 'train_masking_mode': 'random', 'val_masking_mode': 'validation', 'pretrain_fraction': 0.5454545454545454, 'limage_lr': 0.005, 'deep_supervised': True, 'consistency_weight': 0.1, 'class_contrast_weight': 0.01, 'modal_contrast_weight': 0.01, 'cc_modalities': 4, 'split_file': '/homes/ocarpentiero/MiMoSe/src/mimose/data/splits/splits_5fold.json', 'fold': 1}, 'model_class': 'MCPL', 'model_kwargs': {'num_cls': 4, 'cc_modalities': 4, 'layers': 6}, 'optimizer_class': 'Adam', 'optimizer': {'lr': 0.0012, 'weight_decay': 0.0001, 'betas': (0.9, 0.999), 'momentum': None, 'eps': 1e-08}, 'loss_class': 'MCPLLoss', 'loss_kwargs': {'num_classes': None, 'log_clamp_min': 0.005}, 'scheduler_class': 'CosineAnnealingLR', 'scheduler_kwargs': {'T_max': 600, 'eta_min': 0.0}, 'push_to_hf': True, 'hf_repo': 'AImageLab-Zip/MiMoSe', 'dataset_type': <DatasetType.BRATS18: 'brats18'>, 'iter_per_epoch': None, 'patch_size': 128, 'debug': False, 'train_masking_mode': <MaskingMode.RANDOM: 'random'>, 'val_masking_mode': <MaskingMode.VALIDATION: 'validation'>, 'split_file': '/homes/ocarpentiero/MiMoSe/src/mimose/data/splits/splits_5fold.json', '_wandb': {}}
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| 9 |
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2026-07-15 16:47:27,667 INFO MainThread:1289977 [wandb_init.py:init():898] starting backend
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2026-07-15 16:47:28,886 INFO MainThread:1289977 [wandb_init.py:init():1056] starting run threads in backend
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2026-07-15 16:47:29,238 INFO MainThread:1289977 [wandb_run.py:_console_start():2554] atexit reg
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| 19 |
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2026-07-15 16:47:29,247 INFO MainThread:1289977 [wandb_init.py:init():1094] run started, returning control to user process
|
| 20 |
+
2026-07-15 21:53:39,888 INFO MainThread:1289977 [wandb_run.py:_finish():2321] finishing run homarone-unimore/MiMoSe/81anxg9k
|
| 21 |
+
2026-07-15 21:53:39,889 INFO MainThread:1289977 [wandb_run.py:_atexit_cleanup():2520] got exitcode: 0
|
| 22 |
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2026-07-15 21:53:39,899 INFO MainThread:1289977 [wandb_run.py:_restore():2502] restore
|
| 23 |
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2026-07-15 21:53:39,899 INFO MainThread:1289977 [wandb_run.py:_restore():2508] restore done
|
mifpn23_fold5/wandb/debug-internal.log
ADDED
|
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|
|
|
mifpn23_fold5/wandb/debug.log
ADDED
|
@@ -0,0 +1,20 @@
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| 1 |
+
2026-07-20 13:59:15,673 INFO MainThread:1747873 [wandb_setup.py:_flush():81] Current SDK version is 0.26.1
|
| 2 |
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2026-07-20 13:59:15,673 INFO MainThread:1747873 [wandb_setup.py:_flush():81] Configure stats pid to 1747873
|
| 3 |
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2026-07-20 13:59:15,673 INFO MainThread:1747873 [wandb_setup.py:_flush():81] Loading settings from environment variables
|
| 4 |
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2026-07-20 13:59:15,674 INFO MainThread:1747873 [wandb_init.py:setup_run_log_directory():723] Logging user logs to /work/phd_mimose/runs/mifpn23_fold5/wandb/run-20260720_135915-x73w15so/logs/debug.log
|
| 5 |
+
2026-07-20 13:59:15,675 INFO MainThread:1747873 [wandb_init.py:setup_run_log_directory():724] Logging internal logs to /work/phd_mimose/runs/mifpn23_fold5/wandb/run-20260720_135915-x73w15so/logs/debug-internal.log
|
| 6 |
+
2026-07-20 13:59:15,675 INFO MainThread:1747873 [wandb_init.py:init():850] calling init triggers
|
| 7 |
+
2026-07-20 13:59:15,675 INFO MainThread:1747873 [wandb_init.py:init():855] wandb.init called with sweep_config: {}
|
| 8 |
+
config: {'input_dir': '/work/phd_mimose/mifpn-preprocessed', 'output_dir': '/work/phd_mimose/runs/mifpn23_fold5', 'num_epochs': 1000, 'validation_every': 10, 'batch_size': 4, 'num_workers': 8, 'fp16': False, 'compile': False, 'seed': 0, 'custom_trainer_kwargs': {'iter_per_epoch': None, 'region_fusion_start_epoch': 0, 'patch_size': 80, 'debug': False, 'transform_kind': 'imfuse', 'train_masking_mode': 'random', 'val_masking_mode': 'validation', 'split_file': '/homes/ocarpentiero/MiMoSe/src/mimose/data/splits/splits_5fold.json', 'fold': 5}, 'model_class': 'MIFPN', 'model_kwargs': {'num_cls': 4}, 'optimizer_class': 'AdamW', 'optimizer': {'lr': 0.0004, 'weight_decay': 0.0001, 'betas': (0.9, 0.999), 'momentum': None, 'eps': 1e-08}, 'loss_class': 'MIFPNLoss', 'loss_kwargs': {'num_classes': None, 'fuse_weight': 1.0, 'sep_weight': 1.0, 'prm_weight': 1.0, 'kl_weight': 1.0, 'eps': 0.001, 'log_clamp_min': 0.005}, 'scheduler_class': 'WarmupPolyLR', 'scheduler_kwargs': {'total_iters': 1000, 'power': 0.9, 'warmup_iters': 100}, 'push_to_hf': True, 'hf_repo': 'AImageLab-Zip/MiMoSe', 'dataset_type': <DatasetType.BRATS23: 'brats23'>, 'iter_per_epoch': None, 'region_fusion_start_epoch': 0, 'patch_size': 80, 'debug': False, 'train_masking_mode': <MaskingMode.RANDOM: 'random'>, 'val_masking_mode': <MaskingMode.VALIDATION: 'validation'>, 'split_file': '/homes/ocarpentiero/MiMoSe/src/mimose/data/splits/splits_5fold.json', '_wandb': {}}
|
| 9 |
+
2026-07-20 13:59:15,675 INFO MainThread:1747873 [wandb_init.py:init():898] starting backend
|
| 10 |
+
2026-07-20 13:59:16,383 INFO MainThread:1747873 [wandb_init.py:init():913] sending inform_init request
|
| 11 |
+
2026-07-20 13:59:16,946 INFO MainThread:1747873 [wandb_init.py:init():918] backend started and connected
|
| 12 |
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2026-07-20 13:59:16,950 INFO MainThread:1747873 [wandb_init.py:init():988] updated telemetry
|
| 13 |
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2026-07-20 13:59:16,975 INFO MainThread:1747873 [wandb_init.py:init():1011] communicating run to backend with 90.0 second timeout
|
| 14 |
+
2026-07-20 13:59:17,471 INFO MainThread:1747873 [wandb_init.py:init():1051] run resumed
|
| 15 |
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2026-07-20 13:59:17,475 INFO MainThread:1747873 [wandb_init.py:init():1056] starting run threads in backend
|
| 16 |
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2026-07-20 13:59:17,822 INFO MainThread:1747873 [wandb_run.py:_console_start():2554] atexit reg
|
| 17 |
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2026-07-20 13:59:17,822 INFO MainThread:1747873 [wandb_run.py:_redirect():2403] redirect: wrap_raw
|
| 18 |
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2026-07-20 13:59:17,823 INFO MainThread:1747873 [wandb_run.py:_redirect():2472] Wrapping output streams.
|
| 19 |
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2026-07-20 13:59:17,823 INFO MainThread:1747873 [wandb_run.py:_redirect():2495] Redirects installed.
|
| 20 |
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2026-07-20 13:59:17,828 INFO MainThread:1747873 [wandb_init.py:init():1094] run started, returning control to user process
|
mifpn23_fold5/wandb/run-20260718_055025-x73w15so/files/requirements.txt
ADDED
|
@@ -0,0 +1,124 @@
|
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|
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|
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|
|
|
|
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|
|
|
|
|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
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|
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|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
six==1.17.0
|
| 2 |
+
nvidia-cutlass-dsl==4.6.0
|
| 3 |
+
et_xmlfile==2.0.0
|
| 4 |
+
certifi==2026.4.22
|
| 5 |
+
nvidia-nccl-cu12==2.27.5
|
| 6 |
+
regex==2026.6.28
|
| 7 |
+
ml_dtypes==0.5.4
|
| 8 |
+
simpleitk==2.5.4
|
| 9 |
+
kiwisolver==1.5.0
|
| 10 |
+
idna==3.13
|
| 11 |
+
annotated-types==0.7.0
|
| 12 |
+
nvidia-cutlass-dsl-libs-cu12==4.6.0
|
| 13 |
+
cycler==0.12.1
|
| 14 |
+
ptflops==0.7.5
|
| 15 |
+
typing-inspection==0.4.2
|
| 16 |
+
ninja==1.13.0
|
| 17 |
+
nvidia-cufile-cu12==1.13.1.3
|
| 18 |
+
nvidia-cuda-nvrtc-cu12==12.8.93
|
| 19 |
+
cloudpickle==3.1.2
|
| 20 |
+
python-dateutil==2.9.0.post0
|
| 21 |
+
tokenizers==0.22.2
|
| 22 |
+
packaging==26.2
|
| 23 |
+
wcwidth==0.6.0
|
| 24 |
+
safetensors==0.7.0
|
| 25 |
+
torch_c_dlpack_ext==0.1.5
|
| 26 |
+
mdurl==0.1.2
|
| 27 |
+
click==8.3.3
|
| 28 |
+
Jinja2==3.1.6
|
| 29 |
+
dynamic_network_architectures==0.4.3
|
| 30 |
+
contourpy==1.3.3
|
| 31 |
+
pydantic_core==2.46.3
|
| 32 |
+
nvidia-curand-cu12==10.3.9.90
|
| 33 |
+
PyYAML==6.0.3
|
| 34 |
+
GitPython==3.1.49
|
| 35 |
+
gitdb==4.0.12
|
| 36 |
+
nvidia-cusparselt-cu12==0.7.1
|
| 37 |
+
nvidia-cusparse-cu12==12.5.8.93
|
| 38 |
+
z3-solver==4.15.4.0
|
| 39 |
+
nvidia-nvtx-cu12==12.8.90
|
| 40 |
+
nvidia-nvjitlink-cu12==12.8.93
|
| 41 |
+
nvidia-cufft-cu12==11.3.3.83
|
| 42 |
+
httpcore==1.0.9
|
| 43 |
+
cuda-python==13.3.1
|
| 44 |
+
MiMoSe==0.0.2
|
| 45 |
+
nvidia-cublas-cu12==12.8.4.1
|
| 46 |
+
nodeocc==1.0.26
|
| 47 |
+
MarkupSafe==3.0.3
|
| 48 |
+
timm==1.0.22
|
| 49 |
+
charset-normalizer==3.4.7
|
| 50 |
+
thop==0.1.1-2209072238
|
| 51 |
+
shellingham==1.5.4
|
| 52 |
+
threadpoolctl==3.6.0
|
| 53 |
+
anyio==4.13.0
|
| 54 |
+
nvidia-cudnn-cu12==9.10.2.21
|
| 55 |
+
smmap==5.0.3
|
| 56 |
+
nvidia-cuda-cupti-cu12==12.8.90
|
| 57 |
+
nvidia-cuda-nvdisasm==13.3.73
|
| 58 |
+
typer==0.25.0
|
| 59 |
+
typing_extensions==4.15.0
|
| 60 |
+
causal-conv1d==1.6.2.post1
|
| 61 |
+
requests==2.33.1
|
| 62 |
+
mamba-ssm==2.3.2.post1
|
| 63 |
+
psutil==7.2.2
|
| 64 |
+
filelock==3.29.0
|
| 65 |
+
httpx==0.28.1
|
| 66 |
+
nvidia-cusolver-cu12==11.7.3.90
|
| 67 |
+
markdown-it-py==4.0.0
|
| 68 |
+
urllib3==2.6.3
|
| 69 |
+
h11==0.16.0
|
| 70 |
+
nvidia-nvshmem-cu12==3.3.20
|
| 71 |
+
pyparsing==3.3.2
|
| 72 |
+
annotated-doc==0.0.4
|
| 73 |
+
hf-xet==1.4.3
|
| 74 |
+
cuda-pathfinder==1.5.6
|
| 75 |
+
platformdirs==4.9.6
|
| 76 |
+
MedPy==0.5.2
|
| 77 |
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einops==0.8.2
|
| 78 |
+
wheel==0.47.0
|
| 79 |
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tqdm==4.67.3
|
| 80 |
+
h5py==3.16.0
|
| 81 |
+
protobuf==6.33.6
|
| 82 |
+
nvidia-cuda-runtime-cu12==12.8.90
|
| 83 |
+
fsspec==2026.4.0
|
| 84 |
+
ttkbootstrap==1.20.2
|
| 85 |
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nvidia-cutlass-dsl-libs-base==4.6.0
|
| 86 |
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mpmath==1.3.0
|
| 87 |
+
rich==15.0.0
|
| 88 |
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pillow==12.2.0
|
| 89 |
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cuda-bindings==13.3.1
|
| 90 |
+
quack-kernels==0.6.0
|
| 91 |
+
prompt_toolkit==3.0.52
|
| 92 |
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joblib==1.5.3
|
| 93 |
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pydantic==2.13.3
|
| 94 |
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nvidia-cutlass-dsl-libs-core==4.6.0
|
| 95 |
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openpyxl==3.1.5
|
| 96 |
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huggingface_hub==1.13.0
|
| 97 |
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torchvision==0.24.1
|
| 98 |
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sentry-sdk==2.58.0
|
| 99 |
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cuda-core==1.0.1
|
| 100 |
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apache-tvm-ffi==0.1.9
|
| 101 |
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wandb==0.26.1
|
| 102 |
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fonttools==4.62.1
|
| 103 |
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Pygments==2.20.0
|
| 104 |
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triton==3.5.1
|
| 105 |
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setuptools==82.0.1
|
| 106 |
+
networkx==3.6.1
|
| 107 |
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matplotlib==3.10.9
|
| 108 |
+
numpy==2.4.4
|
| 109 |
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scikit-learn==1.8.0
|
| 110 |
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scipy==1.17.1
|
| 111 |
+
pandas==3.0.2
|
| 112 |
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sympy==1.14.0
|
| 113 |
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transformers==5.12.1
|
| 114 |
+
tilelang==0.1.8
|
| 115 |
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torch==2.9.1
|
| 116 |
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mypy_extensions==1.1.0
|
| 117 |
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iniconfig==2.3.0
|
| 118 |
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pluggy==1.6.0
|
| 119 |
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ruff==0.15.12
|
| 120 |
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librt==0.9.0
|
| 121 |
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pathspec==1.1.1
|
| 122 |
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pytest==9.0.3
|
| 123 |
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mypy==1.20.2
|
| 124 |
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MiMoSe==0.0.2
|
mifpn23_fold5/wandb/run-20260718_055025-x73w15so/files/wandb-metadata.json
ADDED
|
@@ -0,0 +1,92 @@
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|
|
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|
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|
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|
|
|
|
|
|
|
|
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|
|
|
|
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|
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|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"os": "Linux-5.15.0-181-generic-x86_64-with-glibc2.35",
|
| 3 |
+
"python": "CPython 3.12.13",
|
| 4 |
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"startedAt": "2026-07-18T03:50:25.005239Z",
|
| 5 |
+
"args": [
|
| 6 |
+
"train",
|
| 7 |
+
"--config",
|
| 8 |
+
"mifpn_23.yaml",
|
| 9 |
+
"--fold",
|
| 10 |
+
"5",
|
| 11 |
+
"--run-suffix",
|
| 12 |
+
"fold5",
|
| 13 |
+
"--seed",
|
| 14 |
+
"0",
|
| 15 |
+
"--try-resume"
|
| 16 |
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],
|
| 17 |
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"program": "/homes/ocarpentiero/MiMoSe/.venv/bin/mimose",
|
| 18 |
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"codePath": ".venv/bin/mimose",
|
| 19 |
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"codePathLocal": ".venv/bin/mimose",
|
| 20 |
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"git": {
|
| 21 |
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"remote": "https://github.com/AImageLab-zip/IM-Fuse.git",
|
| 22 |
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"commit": "210b4b036fc8ef05a1259b830025b1633fe5fb48"
|
| 23 |
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},
|
| 24 |
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"root": "/work/phd_mimose/runs/mifpn23_fold5",
|
| 25 |
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"host": "labetty",
|
| 26 |
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"executable": "/homes/ocarpentiero/MiMoSe/.venv/bin/python3",
|
| 27 |
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"cpu_count": 24,
|
| 28 |
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"cpu_count_logical": 48,
|
| 29 |
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|
| 30 |
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| 31 |
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|
| 46 |
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|
| 47 |
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|
| 48 |
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],
|
| 49 |
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"cudaVersion": "13.2",
|
| 50 |
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"slurm": {
|
| 51 |
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"cluster_name": "aimagelab",
|
| 52 |
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"conf": "/etc/slurm/slurm.conf",
|
| 53 |
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|
| 54 |
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|
| 55 |
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| 56 |
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| 57 |
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| 58 |
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| 59 |
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|
| 60 |
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"job_end_time": "1784433005",
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| 61 |
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| 62 |
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| 63 |
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"job_id": "67845",
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| 64 |
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| 65 |
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"job_nodelist": "labetty",
|
| 66 |
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"job_num_nodes": "1",
|
| 67 |
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"job_partition": "boost_usr_prod",
|
| 68 |
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"job_qos": "normal",
|
| 69 |
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"job_start_time": "1784346605",
|
| 70 |
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"job_uid": "92375",
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| 71 |
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"job_user": "ocarpentiero",
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| 72 |
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| 73 |
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"localid": "0",
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| 74 |
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| 75 |
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| 76 |
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| 77 |
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| 78 |
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| 79 |
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| 80 |
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| 81 |
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| 82 |
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| 83 |
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"submit_dir": "/homes/ocarpentiero/MiMoSe",
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| 84 |
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"submit_host": "ailb-login-03",
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| 85 |
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"task_pid": "1479923",
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| 86 |
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| 87 |
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"topology_addr": "labetty",
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| 88 |
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"topology_addr_pattern": "node",
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| 89 |
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"tres_per_task": "cpu=8"
|
| 90 |
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},
|
| 91 |
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"writerId": "4wzmgkh5iy0sukqy0a9sy7v3bcfhkox2"
|
| 92 |
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}
|
mifpn23_fold5/wandb/run-20260718_055025-x73w15so/logs/debug-core.log
ADDED
|
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|
| 1 |
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{"time":"2026-07-18T05:50:25.887354124+02:00","level":"INFO","msg":"main: starting server","port-filename":"/tmp/tmp8cjwfvb8/port-1479926.txt","pid":1479926,"detached":false,"idle-timeout":600000000000,"log-level":0,"disable-analytics":false,"shutdown-on-parent-exit":false,"enable-dcgm-profiling":false}
|
| 2 |
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{"time":"2026-07-18T05:50:25.888219738+02:00","level":"INFO","msg":"server: will exit if parent process dies","ppid":1479926}
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| 3 |
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{"time":"2026-07-18T05:50:25.888196459+02:00","level":"INFO","msg":"server: accepting connections","addr":{"Name":"/tmp/wandb-1479926-1479961-1387973029/socket","Net":"unix"}}
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{"time":"2026-07-18T05:50:26.059395143+02:00","level":"INFO","msg":"connection: ManageConnectionData: new connection created","id":"1(@)"}
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| 5 |
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{"time":"2026-07-18T05:50:26.077373792+02:00","level":"INFO","msg":"handleInformInit: received","streamId":"x73w15so","id":"1(@)"}
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{"time":"2026-07-18T05:50:26.405826224+02:00","level":"INFO","msg":"handleInformInit: stream started","streamId":"x73w15so","id":"1(@)"}
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{"time":"2026-07-18T05:50:32.138338145+02:00","level":"INFO","msg":"connection: cancelling request","id":"1(@)","requestId":"zsk7fl53xym7"}
|
mifpn23_fold5/wandb/run-20260718_055025-x73w15so/logs/debug-internal.log
ADDED
|
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|
|
|
mifpn23_fold5/wandb/run-20260718_055025-x73w15so/logs/debug.log
ADDED
|
@@ -0,0 +1,19 @@
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|
| 1 |
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2026-07-18 05:50:25,689 INFO MainThread:1479926 [wandb_setup.py:_flush():81] Current SDK version is 0.26.1
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2026-07-18 05:50:25,689 INFO MainThread:1479926 [wandb_setup.py:_flush():81] Configure stats pid to 1479926
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2026-07-18 05:50:25,689 INFO MainThread:1479926 [wandb_setup.py:_flush():81] Loading settings from environment variables
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2026-07-18 05:50:25,690 INFO MainThread:1479926 [wandb_init.py:setup_run_log_directory():723] Logging user logs to /work/phd_mimose/runs/mifpn23_fold5/wandb/run-20260718_055025-x73w15so/logs/debug.log
|
| 5 |
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2026-07-18 05:50:25,691 INFO MainThread:1479926 [wandb_init.py:setup_run_log_directory():724] Logging internal logs to /work/phd_mimose/runs/mifpn23_fold5/wandb/run-20260718_055025-x73w15so/logs/debug-internal.log
|
| 6 |
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2026-07-18 05:50:25,691 INFO MainThread:1479926 [wandb_init.py:init():850] calling init triggers
|
| 7 |
+
2026-07-18 05:50:25,691 INFO MainThread:1479926 [wandb_init.py:init():855] wandb.init called with sweep_config: {}
|
| 8 |
+
config: {'input_dir': '/work/phd_mimose/mifpn-preprocessed', 'output_dir': '/work/phd_mimose/runs/mifpn23_fold5', 'num_epochs': 1000, 'validation_every': 10, 'batch_size': 4, 'num_workers': 8, 'fp16': False, 'compile': False, 'seed': 0, 'custom_trainer_kwargs': {'iter_per_epoch': None, 'region_fusion_start_epoch': 0, 'patch_size': 80, 'debug': False, 'transform_kind': 'imfuse', 'train_masking_mode': 'random', 'val_masking_mode': 'validation', 'split_file': '/homes/ocarpentiero/MiMoSe/src/mimose/data/splits/splits_5fold.json', 'fold': 5}, 'model_class': 'MIFPN', 'model_kwargs': {'num_cls': 4}, 'optimizer_class': 'AdamW', 'optimizer': {'lr': 0.0004, 'weight_decay': 0.0001, 'betas': (0.9, 0.999), 'momentum': None, 'eps': 1e-08}, 'loss_class': 'MIFPNLoss', 'loss_kwargs': {'num_classes': None, 'fuse_weight': 1.0, 'sep_weight': 1.0, 'prm_weight': 1.0, 'kl_weight': 1.0, 'eps': 0.001, 'log_clamp_min': 0.005}, 'scheduler_class': 'WarmupPolyLR', 'scheduler_kwargs': {'total_iters': 1000, 'power': 0.9, 'warmup_iters': 100}, 'push_to_hf': True, 'hf_repo': 'AImageLab-Zip/MiMoSe', 'dataset_type': <DatasetType.BRATS23: 'brats23'>, 'iter_per_epoch': None, 'region_fusion_start_epoch': 0, 'patch_size': 80, 'debug': False, 'train_masking_mode': <MaskingMode.RANDOM: 'random'>, 'val_masking_mode': <MaskingMode.VALIDATION: 'validation'>, 'split_file': '/homes/ocarpentiero/MiMoSe/src/mimose/data/splits/splits_5fold.json', '_wandb': {}}
|
| 9 |
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2026-07-18 05:50:25,691 INFO MainThread:1479926 [wandb_init.py:init():898] starting backend
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| 10 |
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2026-07-18 05:50:26,060 INFO MainThread:1479926 [wandb_init.py:init():913] sending inform_init request
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| 11 |
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2026-07-18 05:50:26,406 INFO MainThread:1479926 [wandb_init.py:init():918] backend started and connected
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2026-07-18 05:50:26,410 INFO MainThread:1479926 [wandb_init.py:init():988] updated telemetry
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2026-07-18 05:50:26,442 INFO MainThread:1479926 [wandb_init.py:init():1011] communicating run to backend with 90.0 second timeout
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| 14 |
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2026-07-18 05:50:26,835 INFO MainThread:1479926 [wandb_init.py:init():1056] starting run threads in backend
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| 15 |
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2026-07-18 05:50:27,131 INFO MainThread:1479926 [wandb_run.py:_console_start():2554] atexit reg
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2026-07-18 05:50:27,131 INFO MainThread:1479926 [wandb_run.py:_redirect():2403] redirect: wrap_raw
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2026-07-18 05:50:27,132 INFO MainThread:1479926 [wandb_run.py:_redirect():2472] Wrapping output streams.
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| 18 |
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2026-07-18 05:50:27,132 INFO MainThread:1479926 [wandb_run.py:_redirect():2495] Redirects installed.
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| 19 |
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2026-07-18 05:50:27,136 INFO MainThread:1479926 [wandb_init.py:init():1094] run started, returning control to user process
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