from __future__ import annotations import json from pathlib import Path import numpy as np from sklearn.model_selection import train_test_split PROJECT_DIR = Path(__file__).resolve().parent DATA_DIR = PROJECT_DIR / "data" def build_graph(nodes: int = 600, seed: int = 2033) -> dict[str, np.ndarray]: rng = np.random.default_rng(seed) subnets = np.repeat(np.arange(6), nodes // 6) adjacency = np.zeros((nodes, nodes), dtype=np.float32) for left in range(nodes): same_subnet = subnets == subnets[left] probabilities = np.where(same_subnet, 0.045, 0.0025) links = rng.random(nodes) < probabilities links[: left + 1] = False adjacency[left, links] = 1 adjacency = np.maximum(adjacency, adjacency.T) compromised = np.zeros(nodes, dtype=bool) seeds = rng.choice(nodes, size=14, replace=False) compromised[seeds] = True for _ in range(4): exposure = adjacency @ compromised.astype(np.float32) infection_probability = 1 - np.exp(-0.22 * exposure) new_infections = (rng.random(nodes) < infection_probability) & ~compromised compromised |= new_infections base = rng.normal(0, 1, (nodes, 8)).astype(np.float32) labels = compromised.astype(np.int64) signal = labels[:, None].astype(np.float32) features = base.copy() features[:, 0:1] += signal * rng.normal(1.0, 0.5, (nodes, 1)) features[:, 1:2] += signal * rng.normal(0.8, 0.6, (nodes, 1)) features[:, 2:3] += signal * rng.normal(0.7, 0.6, (nodes, 1)) features[:, 3:4] += signal * rng.normal(0.5, 0.7, (nodes, 1)) features[:, 4] += subnets * 0.12 indices = np.arange(nodes) train, remainder = train_test_split( indices, test_size=0.40, stratify=labels, random_state=seed, ) validation, test = train_test_split( remainder, test_size=0.50, stratify=labels[remainder], random_state=seed, ) return { "features": features, "adjacency": adjacency, "labels": labels, "subnets": subnets.astype(np.int64), "train_indices": train, "validation_indices": validation, "test_indices": test, "seed_nodes": seeds.astype(np.int64), } def main() -> None: DATA_DIR.mkdir(parents=True, exist_ok=True) graph = build_graph() np.savez_compressed(DATA_DIR / "meshgraph.npz", **graph) manifest = { "nodes": len(graph["labels"]), "edges": int(graph["adjacency"].sum() // 2), "features": graph["features"].shape[1], "subnets": len(np.unique(graph["subnets"])), "compromised_rate": float(graph["labels"].mean()), "train_nodes": len(graph["train_indices"]), "validation_nodes": len(graph["validation_indices"]), "test_nodes": len(graph["test_indices"]), "path": "meshgraph.npz", } (DATA_DIR / "manifest.json").write_text( json.dumps(manifest, indent=2), encoding="utf-8", ) print(json.dumps(manifest, indent=2)) if __name__ == "__main__": main()