jax-fli-experiments / tools /reencode_parquet.py
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#!/usr/bin/env python3
"""Probe / dry-run / re-encode parquet files to dictionary + a chosen codec to shrink them.
Only the on-disk encoding changes; the logical data is preserved bit-for-bit, so HF
`load_dataset` features and config bundling are unaffected. Safe by design:
* verifies EVERY file before replacing: full-table data+type equality (orig.equals,
check_metadata=False) AND byte-identical 'huggingface' schema metadata AND the array
column's ARROW:extension metadata (what lets datasets rebuild Array2D)
* atomic: writes a temp then os.replace() — an interrupted run never leaves a half file
* one file at a time (peak RAM ~= largest single file)
* idempotent: in `reencode`, files already dictionary-encoded in the target codec are skipped
Modes (PATH may be a single .parquet file OR a folder, recursed for **/*.parquet):
probe read-only; measure target size and print the table. No verification, no write.
dryrun full verified pipeline (re-encode to temp + verify) but never replace. Prints table.
reencode same verified pipeline, then atomic in-place replace for files that shrink (>2%).
Every mode ends with a per-file + per-folder + grand-total size table.
Usage:
python reencode_parquet.py probe PATH [--codec ZSTD]
python reencode_parquet.py dryrun PATH [--codec ZSTD]
python reencode_parquet.py reencode PATH [--codec ZSTD]
--codec defaults to SNAPPY (pyarrow's default; what this dataset is already encoded with).
"""
import argparse
import glob
import os
import tempfile
import pyarrow.parquet as pq
HF_KEY = b"huggingface"
def iter_parquet(path):
"""A single .parquet file -> [path]; a folder -> sorted **/*.parquet (excl. hidden)."""
if os.path.isfile(path):
return [path]
files = glob.glob(os.path.join(path, "**", "*.parquet"), recursive=True)
return sorted(f for f in files if "/." not in f and not os.path.basename(f).startswith("."))
def uncompressed_size(path):
"""Sum of total_uncompressed_size over every column of every row group (logical size)."""
md = pq.ParquetFile(path).metadata
total = 0
for g in range(md.num_row_groups):
rg = md.row_group(g)
total += sum(rg.column(i).total_uncompressed_size for i in range(rg.num_columns))
return total
def _big_column(path):
"""The biggest (uncompressed) column of the first row group — representative of encoding."""
rg = pq.ParquetFile(path).metadata.row_group(0)
cols = [rg.column(i) for i in range(rg.num_columns)]
return max(cols, key=lambda c: c.total_uncompressed_size)
def _array_ext_meta(table):
"""Return the ARROW:extension metadata of the first extension column, or None."""
for f in table.schema:
m = f.metadata or {}
if b"ARROW:extension:name" in m:
return dict(m)
return None
def write_temp(table, codec, dirpath):
"""Write `table` to a temp file in `dirpath` with `codec` + dictionary. Return temp path."""
fd, tmp = tempfile.mkstemp(dir=dirpath, suffix=".reenc.tmp")
os.close(fd)
pq.write_table(table, tmp, compression=codec, use_dictionary=True)
return tmp
def verify(orig, tmp_path):
"""Raise if the re-encoded temp is not bit-for-bit equal to `orig` (data + key metadata)."""
back = pq.read_table(tmp_path)
if not orig.equals(back, check_metadata=False):
raise RuntimeError("DATA MISMATCH after re-encode")
if (back.schema.metadata or {}).get(HF_KEY) != (orig.schema.metadata or {}).get(HF_KEY):
raise RuntimeError("'huggingface' schema metadata changed")
if _array_ext_meta(back) != _array_ext_meta(orig):
raise RuntimeError("array extension metadata changed")
def process(path, mode, codec):
"""Return a row dict {path, current, uncompressed, target, status} for one file.
Modes: probe (measure only), dryrun (measure + verify), reencode (measure + verify + replace).
"""
current = os.path.getsize(path)
uncompr = uncompressed_size(path)
# reencode is idempotent: skip files already dict-encoded in the target codec.
if mode == "reencode":
big = _big_column(path)
if big.has_dictionary_page and big.compression == codec:
return dict(path=path, current=current, uncompressed=uncompr,
target=current, status="skipped (already)")
orig = pq.read_table(path)
dirpath = os.path.dirname(path) or "."
tmp = write_temp(orig, codec, dirpath)
try:
if mode != "probe":
verify(orig, tmp)
target = os.path.getsize(tmp)
beneficial = target < current * 0.98 # only worth it if it saves >2%
if mode == "reencode" and beneficial:
os.replace(tmp, path) # atomic in-place swap
tmp = None
return dict(path=path, current=current, uncompressed=uncompr,
target=target, status="written")
status = ("would shrink" if beneficial else "no gain") if mode != "probe" else "probed"
return dict(path=path, current=current, uncompressed=uncompr,
target=target, status=status)
finally:
if tmp and os.path.exists(tmp):
os.remove(tmp)
def _mb(n):
return f"{n / 1e6:9.1f} MB"
def _savings(current, target):
saved = current - target
pct = (1 - target / current) * 100 if current else 0
return f"{saved / 1e6:9.1f} MB ({pct:4.0f}%)"
def print_table(rows):
"""Per-file rows grouped by parent folder, a subtotal per folder, then a grand total."""
name_w = max([len(os.path.basename(r["path"])) for r in rows] + [12])
header = (f" {'file'.ljust(name_w)} | {'current':>12} | {'uncompr':>12} | "
f"{'target':>12} | {'savings':>18}")
sep = " " + "-" * (len(header) - 2)
folders = {}
for r in rows:
folders.setdefault(os.path.dirname(r["path"]) or ".", []).append(r)
g_cur = g_unc = g_tgt = 0
print(header)
print(sep)
for folder in sorted(folders):
fr = folders[folder]
f_cur = f_unc = f_tgt = 0
for r in fr:
print(f" {os.path.basename(r['path']).ljust(name_w)} | "
f"{_mb(r['current'])} | {_mb(r['uncompressed'])} | {_mb(r['target'])} | "
f"{_savings(r['current'], r['target'])} {r['status']}")
f_cur += r["current"]
f_unc += r["uncompressed"]
f_tgt += r["target"]
print(f" {('Folder ' + folder).ljust(name_w)} | "
f"{_mb(f_cur)} | {_mb(f_unc)} | {_mb(f_tgt)} | {_savings(f_cur, f_tgt)}")
print(sep)
g_cur += f_cur
g_unc += f_unc
g_tgt += f_tgt
print(f" {'GRAND TOTAL'.ljust(name_w)} | "
f"{_mb(g_cur)} | {_mb(g_unc)} | {_mb(g_tgt)} | {_savings(g_cur, g_tgt)}")
def main():
ap = argparse.ArgumentParser(description=__doc__,
formatter_class=argparse.RawDescriptionHelpFormatter)
ap.add_argument("mode", choices=["probe", "dryrun", "reencode"])
ap.add_argument("path", help="a .parquet file or a folder (recursed for **/*.parquet)")
ap.add_argument("--codec", default="SNAPPY", help="target compression codec (default: SNAPPY)")
args = ap.parse_args()
codec = args.codec.upper()
files = iter_parquet(args.path)
if not files:
raise SystemExit(f"no parquet files under {args.path}")
print(f"MODE: {args.mode.upper()} codec: {codec} ({len(files)} files)\n")
rows = []
for f in files:
rows.append(process(f, args.mode, codec))
print()
print_table(rows)
if __name__ == "__main__":
main()