ASaiSusmitha danjacobellis commited on
Commit
8637ec2
·
verified ·
0 Parent(s):

Duplicate from danjacobellis/chexpert

Browse files

Co-authored-by: Dan Jacobellis <danjacobellis@users.noreply.huggingface.co>

.gitattributes ADDED
@@ -0,0 +1,55 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ *.7z filter=lfs diff=lfs merge=lfs -text
2
+ *.arrow filter=lfs diff=lfs merge=lfs -text
3
+ *.bin filter=lfs diff=lfs merge=lfs -text
4
+ *.bz2 filter=lfs diff=lfs merge=lfs -text
5
+ *.ckpt filter=lfs diff=lfs merge=lfs -text
6
+ *.ftz filter=lfs diff=lfs merge=lfs -text
7
+ *.gz filter=lfs diff=lfs merge=lfs -text
8
+ *.h5 filter=lfs diff=lfs merge=lfs -text
9
+ *.joblib filter=lfs diff=lfs merge=lfs -text
10
+ *.lfs.* filter=lfs diff=lfs merge=lfs -text
11
+ *.lz4 filter=lfs diff=lfs merge=lfs -text
12
+ *.mlmodel filter=lfs diff=lfs merge=lfs -text
13
+ *.model filter=lfs diff=lfs merge=lfs -text
14
+ *.msgpack filter=lfs diff=lfs merge=lfs -text
15
+ *.npy filter=lfs diff=lfs merge=lfs -text
16
+ *.npz filter=lfs diff=lfs merge=lfs -text
17
+ *.onnx filter=lfs diff=lfs merge=lfs -text
18
+ *.ot filter=lfs diff=lfs merge=lfs -text
19
+ *.parquet filter=lfs diff=lfs merge=lfs -text
20
+ *.pb filter=lfs diff=lfs merge=lfs -text
21
+ *.pickle filter=lfs diff=lfs merge=lfs -text
22
+ *.pkl filter=lfs diff=lfs merge=lfs -text
23
+ *.pt filter=lfs diff=lfs merge=lfs -text
24
+ *.pth filter=lfs diff=lfs merge=lfs -text
25
+ *.rar filter=lfs diff=lfs merge=lfs -text
26
+ *.safetensors filter=lfs diff=lfs merge=lfs -text
27
+ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
28
+ *.tar.* filter=lfs diff=lfs merge=lfs -text
29
+ *.tar filter=lfs diff=lfs merge=lfs -text
30
+ *.tflite filter=lfs diff=lfs merge=lfs -text
31
+ *.tgz filter=lfs diff=lfs merge=lfs -text
32
+ *.wasm filter=lfs diff=lfs merge=lfs -text
33
+ *.xz filter=lfs diff=lfs merge=lfs -text
34
+ *.zip filter=lfs diff=lfs merge=lfs -text
35
+ *.zst filter=lfs diff=lfs merge=lfs -text
36
+ *tfevents* filter=lfs diff=lfs merge=lfs -text
37
+ # Audio files - uncompressed
38
+ *.pcm filter=lfs diff=lfs merge=lfs -text
39
+ *.sam filter=lfs diff=lfs merge=lfs -text
40
+ *.raw filter=lfs diff=lfs merge=lfs -text
41
+ # Audio files - compressed
42
+ *.aac filter=lfs diff=lfs merge=lfs -text
43
+ *.flac filter=lfs diff=lfs merge=lfs -text
44
+ *.mp3 filter=lfs diff=lfs merge=lfs -text
45
+ *.ogg filter=lfs diff=lfs merge=lfs -text
46
+ *.wav filter=lfs diff=lfs merge=lfs -text
47
+ # Image files - uncompressed
48
+ *.bmp filter=lfs diff=lfs merge=lfs -text
49
+ *.gif filter=lfs diff=lfs merge=lfs -text
50
+ *.png filter=lfs diff=lfs merge=lfs -text
51
+ *.tiff filter=lfs diff=lfs merge=lfs -text
52
+ # Image files - compressed
53
+ *.jpg filter=lfs diff=lfs merge=lfs -text
54
+ *.jpeg filter=lfs diff=lfs merge=lfs -text
55
+ *.webp filter=lfs diff=lfs merge=lfs -text
README.md ADDED
@@ -0,0 +1,184 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ ---
2
+ dataset_info:
3
+ features:
4
+ - name: Path
5
+ dtype: string
6
+ - name: Sex
7
+ dtype:
8
+ class_label:
9
+ names:
10
+ '0': Male
11
+ '1': Female
12
+ - name: Age
13
+ dtype: int64
14
+ - name: Frontal/Lateral
15
+ dtype:
16
+ class_label:
17
+ names:
18
+ '0': Frontal
19
+ '1': Lateral
20
+ - name: AP/PA
21
+ dtype:
22
+ class_label:
23
+ names:
24
+ '0': AP
25
+ '1': PA
26
+ '2': ''
27
+ - name: No Finding
28
+ dtype:
29
+ class_label:
30
+ names:
31
+ '0': unlabeled
32
+ '1': uncertain
33
+ '2': absent
34
+ '3': present
35
+ - name: Enlarged Cardiomediastinum
36
+ dtype:
37
+ class_label:
38
+ names:
39
+ '0': unlabeled
40
+ '1': uncertain
41
+ '2': absent
42
+ '3': present
43
+ - name: Cardiomegaly
44
+ dtype:
45
+ class_label:
46
+ names:
47
+ '0': unlabeled
48
+ '1': uncertain
49
+ '2': absent
50
+ '3': present
51
+ - name: Lung Opacity
52
+ dtype:
53
+ class_label:
54
+ names:
55
+ '0': unlabeled
56
+ '1': uncertain
57
+ '2': absent
58
+ '3': present
59
+ - name: Lung Lesion
60
+ dtype:
61
+ class_label:
62
+ names:
63
+ '0': unlabeled
64
+ '1': uncertain
65
+ '2': absent
66
+ '3': present
67
+ - name: Edema
68
+ dtype:
69
+ class_label:
70
+ names:
71
+ '0': unlabeled
72
+ '1': uncertain
73
+ '2': absent
74
+ '3': present
75
+ - name: Consolidation
76
+ dtype:
77
+ class_label:
78
+ names:
79
+ '0': unlabeled
80
+ '1': uncertain
81
+ '2': absent
82
+ '3': present
83
+ - name: Pneumonia
84
+ dtype:
85
+ class_label:
86
+ names:
87
+ '0': unlabeled
88
+ '1': uncertain
89
+ '2': absent
90
+ '3': present
91
+ - name: Atelectasis
92
+ dtype:
93
+ class_label:
94
+ names:
95
+ '0': unlabeled
96
+ '1': uncertain
97
+ '2': absent
98
+ '3': present
99
+ - name: Pneumothorax
100
+ dtype:
101
+ class_label:
102
+ names:
103
+ '0': unlabeled
104
+ '1': uncertain
105
+ '2': absent
106
+ '3': present
107
+ - name: Pleural Effusion
108
+ dtype:
109
+ class_label:
110
+ names:
111
+ '0': unlabeled
112
+ '1': uncertain
113
+ '2': absent
114
+ '3': present
115
+ - name: Pleural Other
116
+ dtype:
117
+ class_label:
118
+ names:
119
+ '0': unlabeled
120
+ '1': uncertain
121
+ '2': absent
122
+ '3': present
123
+ - name: Fracture
124
+ dtype:
125
+ class_label:
126
+ names:
127
+ '0': unlabeled
128
+ '1': uncertain
129
+ '2': absent
130
+ '3': present
131
+ - name: Support Devices
132
+ dtype:
133
+ class_label:
134
+ names:
135
+ '0': unlabeled
136
+ '1': uncertain
137
+ '2': absent
138
+ '3': present
139
+ - name: image
140
+ dtype: image
141
+ splits:
142
+ - name: train
143
+ num_bytes: 11163990852.674
144
+ num_examples: 223414
145
+ - name: validation
146
+ num_bytes: 12063657
147
+ num_examples: 234
148
+ download_size: 11466560036
149
+ dataset_size: 11176054509.674
150
+ configs:
151
+ - config_name: default
152
+ data_files:
153
+ - split: train
154
+ path: data/train-*
155
+ - split: validation
156
+ path: data/validation-*
157
+ task_categories:
158
+ - image-classification
159
+ pretty_name: chexpert
160
+ size_categories:
161
+ - 100K<n<1M
162
+ ---
163
+
164
+ # CheXpert
165
+
166
+ CheXpert is a large dataset of chest X-rays and competition for automated chest x-ray interpretation, which features uncertainty labels and radiologist-labeled reference standard evaluation sets.
167
+
168
+ [https://stanfordmlgroup.github.io/competitions/chexpert/](https://stanfordmlgroup.github.io/competitions/chexpert/)
169
+
170
+ # Warning on AP/PA label
171
+
172
+ I could not find in the paper a mapping from the 0/1 label to AP/PA, so I assumed 0=AP and 1=PA. Looking at a few images this seems to be correct, but I'm not a radiologist.
173
+
174
+ ```
175
+ @inproceedings{irvin2019chexpert,
176
+ title={Chexpert: A large chest radiograph dataset with uncertainty labels and expert comparison},
177
+ author={Irvin, Jeremy and Rajpurkar, Pranav and Ko, Michael and Yu, Yifan and Ciurea-Ilcus, Silviana and Chute, Chris and Marklund, Henrik and Haghgoo, Behzad and Ball, Robyn and Shpanskaya, Katie and others},
178
+ booktitle={Proceedings of the AAAI conference on artificial intelligence},
179
+ volume={33},
180
+ number={01},
181
+ pages={590--597},
182
+ year={2019}
183
+ }
184
+ ```
data/train-00000-of-00023.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:b55daffbc7d03da9868d4fabb96f05fd613c6d226de243b3218bb4178b99ac4b
3
+ size 487196456
data/train-00001-of-00023.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:eedbc6a784ea78c69d89ec6ad6f476f637e043833022314a4db59cf815fad3d2
3
+ size 485956874
data/train-00002-of-00023.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:401c5497d0c7b506f15a6e0a97be95d857350d10154651c7ce7fc5cef745e8a9
3
+ size 485313737
data/train-00003-of-00023.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:9779bcc4b4cbab9b9bacfebf75f2474c8e528c8b64d623e4c75613ddc2a5bbed
3
+ size 485406561
data/train-00004-of-00023.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:bfc3ccd871047068b1f7bb3fcd9d78cf9c2231a6cef404d9ca4633ace9ed5184
3
+ size 486812174
data/train-00005-of-00023.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:d06c6fa7f57b0948e85c67c01242432ae1b228a0f8ba8cdd7c7202bac473a311
3
+ size 484157915
data/train-00006-of-00023.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:cc1c038986e5268f02f70da0333c1bf59ae90294462b54fed89a58acad0fc159
3
+ size 487437689
data/train-00007-of-00023.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:ff9a37f98ad987f1db89cdc0d1ec89abeebef3c07343044e639c34f9197f5bc1
3
+ size 484654164
data/train-00008-of-00023.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:d80d9dd8298707336825c1257042ac2973b52ef430a3cfb10ff04f05f815cf76
3
+ size 484548214
data/train-00009-of-00023.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:53f0f4fcd3838a76deb9443f9a40abc702cc748541c73342689f06016290a98a
3
+ size 484205225
data/train-00010-of-00023.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:bb427dfca6d0f5b5197c65e10c7d0261a562221c9c98dffc0412b14bd3e64e2d
3
+ size 485022486
data/train-00011-of-00023.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:f120b98357055478debfbdce96dc75267c491ca7fb05e76a7459da884eb2ea62
3
+ size 485954137
data/train-00012-of-00023.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:1c8638960ac0d52dd2e83dc10e832f27282ff4de07e6a41083de62187f7d8e38
3
+ size 486048181
data/train-00013-of-00023.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:bdbd542e1e49ae7817ce04a527b5397db2f04a7fa8d276d67c2444243d865b18
3
+ size 485379239
data/train-00014-of-00023.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:e43fd652e6301748f6308671ca5a71d9dca3e75f7395aa78b1c26e4e69eb48ee
3
+ size 493044079
data/train-00015-of-00023.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:b5de6b03c7e5baecf55b973a15f67dcefbaa0774058507e818055cb43de0a4de
3
+ size 523186749
data/train-00016-of-00023.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:6b46a5ed15f74169f0ca7c987613415154325c25be9606c41101e892bc8a7e98
3
+ size 521700634
data/train-00017-of-00023.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:73b782af9b078677cbfbf0929e8318d56b62f54f5ddbcf240f3c04af2fdf8434
3
+ size 523858084
data/train-00018-of-00023.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:9225e62dd5c4f1dc861cf05cfcbe6741445ddeedccfde78281ac72f15c057df0
3
+ size 520593827
data/train-00019-of-00023.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:e9de2c0d78b973efa72a0b24184b6e008dae6194823c173be79c355d6dc5d39f
3
+ size 520272345
data/train-00020-of-00023.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:a24d5a0c695107ad5f706bae6802be5c34168048dbeda8a06e5c346babf7aa99
3
+ size 518906954
data/train-00021-of-00023.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:02a433a82f52a0b97b0cfc9521d4e8e70d4dd7a2eca5f52d2a213b5db3565fe2
3
+ size 518752297
data/train-00022-of-00023.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:b64ec0405de204fa96116401261f19d4e0f835ebd45041ae2b0172e678d2b17b
3
+ size 516106867
data/validation-00000-of-00001.parquet ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:78a544b5bf0c98de2a1293e9de908e8f8857aebcad4819692314110472acf5b4
3
+ size 12045148