Update README.md
Browse files
README.md
CHANGED
|
@@ -1,5 +1,39 @@
|
|
| 1 |
---
|
| 2 |
license: afl-3.0
|
|
|
|
|
|
|
|
|
|
|
|
|
| 3 |
---
|
| 4 |
|
| 5 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
---
|
| 2 |
license: afl-3.0
|
| 3 |
+
tags:
|
| 4 |
+
- medical
|
| 5 |
+
size_categories:
|
| 6 |
+
- 100M<n<1B
|
| 7 |
---
|
| 8 |
|
| 9 |
+
# Dataset for AVS-Net Pre-training
|
| 10 |
+
|
| 11 |
+
The dataset utilized in the pre-training of the AVS-Net: Attention-based Variable Splitting Network for P-MRI Acceleration model, developed by Y Zhang, J Li, Z Wang, J Duan, and J Li, incorporates data from five distinct protocol sequences. These are:
|
| 12 |
+
|
| 13 |
+
|
| 14 |
+
- (coronal_pd)Coronal Spin Density-weighted without Fat Suppression
|
| 15 |
+
- (coronal_pd_fs)Coronal Spin Density-weighted with Fat Suppression
|
| 16 |
+
- (sagittal_pd)Sagittal Spin Density-weighted
|
| 17 |
+
- (sagittal_t2)Sagittal T2-weighted with Fat Suppression
|
| 18 |
+
- (axial_t2)Axial T2-weighted with Fat Suppression
|
| 19 |
+
|
| 20 |
+
The dataset is structured on a slice-by-slice basis, with each slice containing 20 cases. Each case is comprised of two files: rawdata*.mat and espirit*.mat. The dataset's structure can be outlined as follows:
|
| 21 |
+
|
| 22 |
+
## Dataset: /rds/projects/d/duanj-ai-in-medical-imaging/knee_nyu
|
| 23 |
+
### Protocol: [coronal_pd, coronal_pd_fs, sagittal_pd, sagittal_t2, axial_t2]
|
| 24 |
+
|
| 25 |
+
Dataset architecture:
|
| 26 |
+
Approximately 40 slices per protocol, each slice containing 15 channels, with a height and width (HW) of (640, 368)
|
| 27 |
+
|
| 28 |
+
```
|
| 29 |
+
knee_nyu
|
| 30 |
+
- axial_t2 coronal_pd(X) coronal_pd_fs sagittal_pd sagittal_t2
|
| 31 |
+
| | | | |
|
| 32 |
+
- [1, 2, 3, 4, 5, 6, 7, 8, 9, 10], [11, 12, 13, 14, 15, 16, 17, 18, 19, 20] masks
|
| 33 |
+
| |
|
| 34 |
+
- [train] [val]
|
| 35 |
+
| |
|
| 36 |
+
- espirit*.mat(1-40), rawdata*.mat(1-40) *_masks.mat
|
| 37 |
+
```
|
| 38 |
+
|
| 39 |
+
In this structure, each protocol has approximately 40 slices, each consisting of 15 channels. The dimensions of the data are 640x368 (height x width). For each protocol, the slices are further divided into two groups: the training set ([train]) and the validation set ([val]). The training set includes the espirit*.mat and rawdata*.mat files for each slice, while the validation set contains *_masks.mat files.
|