Update README.md
Browse files
README.md
CHANGED
|
@@ -19,10 +19,12 @@ The dataset utilized in the pre-training of the AVS-Net: Attention-based Variabl
|
|
| 19 |
|
| 20 |
The dataset is structured on a slice-by-slice basis, with each slice containing 20 cases. Each case is comprised of two files: rawdata*.mat and espirit*.mat. The dataset's structure can be outlined as follows:
|
| 21 |
|
| 22 |
-
## Dataset: /rds/projects/d/duanj-ai-in-medical-imaging/knee_nyu
|
| 23 |
-
### Protocol: [coronal_pd, coronal_pd_fs, sagittal_pd, sagittal_t2, axial_t2]
|
| 24 |
|
| 25 |
-
Dataset architecture:
|
|
|
|
|
|
|
|
|
|
|
|
|
| 26 |
Approximately 40 slices per protocol, each slice containing 15 channels, with a height and width (HW) of (640, 368)
|
| 27 |
|
| 28 |
```
|
|
@@ -36,4 +38,14 @@ Approximately 40 slices per protocol, each slice containing 15 channels, with a
|
|
| 36 |
- espirit*.mat(1-40), rawdata*.mat(1-40) *_masks.mat
|
| 37 |
```
|
| 38 |
|
| 39 |
-
In this structure, each protocol has approximately 40 slices, each consisting of 15 channels. The dimensions of the data are 640x368 (height x width). For each protocol, the slices are further divided into two groups: the training set ([train]) and the validation set ([val]). The training set includes the espirit*.mat and rawdata*.mat files for each slice, while the validation set contains *_masks.mat files.
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 19 |
|
| 20 |
The dataset is structured on a slice-by-slice basis, with each slice containing 20 cases. Each case is comprised of two files: rawdata*.mat and espirit*.mat. The dataset's structure can be outlined as follows:
|
| 21 |
|
|
|
|
|
|
|
| 22 |
|
| 23 |
+
## Dataset architecture:
|
| 24 |
+
|
| 25 |
+
- name: /rds/projects/d/duanj-ai-in-medical-imaging/knee_fast_mri
|
| 26 |
+
- Protocol: [coronal_pd, coronal_pd_fs, sagittal_pd, sagittal_t2, axial_t2]
|
| 27 |
+
|
| 28 |
Approximately 40 slices per protocol, each slice containing 15 channels, with a height and width (HW) of (640, 368)
|
| 29 |
|
| 30 |
```
|
|
|
|
| 38 |
- espirit*.mat(1-40), rawdata*.mat(1-40) *_masks.mat
|
| 39 |
```
|
| 40 |
|
| 41 |
+
In this structure, each protocol has approximately 40 slices, each consisting of 15 channels. The dimensions of the data are 640x368 (height x width). For each protocol, the slices are further divided into two groups: the training set ([train]) and the validation set ([val]). The training set includes the espirit*.mat and rawdata*.mat files for each slice, while the validation set contains *_masks.mat files.
|
| 42 |
+
|
| 43 |
+
## Dataset Usage
|
| 44 |
+
|
| 45 |
+
> For a standalone knee dataset download, use `git lfs`(<https://git-lfs.com/>) to download from the `huggingface` datasets(<https://huggingface.co/datasets/AVS-Net/knee_coronal_pd>):
|
| 46 |
+
|
| 47 |
+
```bash
|
| 48 |
+
# Make sure you have git-lfs installed (https://git-lfs.com)
|
| 49 |
+
git lfs install
|
| 50 |
+
git clone -j8 git@hf.co:datasets/AVS-Net/knee_fast_mri
|
| 51 |
+
```
|