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BrookeZhao94 commited on
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  1. metadata.json +8 -1
metadata.json CHANGED
@@ -1,5 +1,6 @@
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  {
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  "1mlc":{"pdb":"1mlc_bae", "pdb_path":"./data/complex_structure/1mlc_bae.pdb", "heavy_chain":"B", "light_chain":"A", "antigen_chains":["E"], "affinity_data":["./data/binding_affinity/1mlc_benchmarking_data.csv"], "receptor_chains":["E"], "ligand_chains":["B","A"], "chain_order":["B","A","E"], "epitope_chain":"E", "paratope_chain":"B"},
 
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  "1n8z":{"pdb":"1n8z_bac", "pdb_path":"./data/complex_structure/1n8z_bac.pdb", "heavy_chain":"B", "light_chain":"A", "antigen_chains":["C"], "affinity_data":["./data/binding_affinity/1n8z_benchmarking_data.csv"], "receptor_chains":["C"], "ligand_chains":["B","A"], "chain_order":["B","A","C"], "epitope_chain":"C", "paratope_chain":"B"},
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  "2fjg":{"pdb":"2fjg_hlv", "pdb_path":"./data/complex_structure/2fjg_hlv.pdb", "heavy_chain":"H", "light_chain":"L", "antigen_chains":["V"], "affinity_data":["./data/binding_affinity/2fjg_benchmarking_data.csv"], "receptor_chains":["V"], "ligand_chains":["H","L"], "chain_order":["H","L","V"], "epitope_chain":"V", "paratope_chain":"H"},
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  "3gbn":{"pdb":"3gbn_hlab", "pdb_path":"./data/complex_structure/3gbn_hlab.pdb", "heavy_chain":"H", "light_chain":"L", "antigen_chains":["A","B"], "affinity_data":["./data/binding_affinity/3gbn_h1_benchmarking_data.csv","./data/binding_affinity/3gbn_h9_benchmarking_data.csv"], "receptor_chains":["A","B"], "ligand_chains":["H","L"], "chain_order":["H","L","A","B"], "epitope_chain":"B", "paratope_chain":"H"},
@@ -7,5 +8,11 @@
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  "aayl49":{"pdb":"aayl49_bca", "pdb_path":"./data/complex_structure/AAYL49_bca.pdb", "heavy_chain":"B", "light_chain":"C", "antigen_chains":["A"], "affinity_data":["./data/binding_affinity/aayl49_benchmarking_data.csv"], "receptor_chains":["A"], "ligand_chains":["B","C"], "chain_order":["B","C","A"], "epitope_chain":"A", "paratope_chain":"B"},
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  "aayl49_ML":{"pdb":"aayl49_bca", "pdb_path":"./data/complex_structure/AAYL49_bca.pdb", "heavy_chain":"B", "light_chain":"C", "antigen_chains":["A"], "affinity_data":["./data/binding_affinity/aayl49_ML_benchmarking_data.csv"], "receptor_chains":["A"], "ligand_chains":["B","C"], "chain_order":["B","C","A"], "epitope_chain":"A", "paratope_chain":"B"},
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  "aayl51":{"pdb":"aayl51_bca", "pdb_path":"./data/complex_structure/AAYL51_bca.pdb", "heavy_chain":"B", "light_chain":"C", "antigen_chains":["A"], "affinity_data":["./data/binding_affinity/aayl51_benchmarking_data.csv"], "receptor_chains":["A"], "ligand_chains":["B","C"], "chain_order":["B","C","A"], "epitope_chain":"A", "paratope_chain":"B"},
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- "1mhp":{"pdb":"1mhp_hla", "pdb_path":"./data/complex_structure/1mhp_hla.pdb", "heavy_chain":"H", "light_chain":"L", "antigen_chains":["A"], "affinity_data":["./data/binding_affinity/1mhp_benchmarking_data.csv"], "receptor_chains":["A"], "ligand_chains":["H","L"], "chain_order":["H","L","A"], "epitope_chain":"A", "paratope_chain":"H"}
 
 
 
 
 
 
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  }
 
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  {
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  "1mlc":{"pdb":"1mlc_bae", "pdb_path":"./data/complex_structure/1mlc_bae.pdb", "heavy_chain":"B", "light_chain":"A", "antigen_chains":["E"], "affinity_data":["./data/binding_affinity/1mlc_benchmarking_data.csv"], "receptor_chains":["E"], "ligand_chains":["B","A"], "chain_order":["B","A","E"], "epitope_chain":"E", "paratope_chain":"B"},
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+ "1mlc_LC":{"pdb":"1mlc_bae", "pdb_path":"./data/complex_structure/1mlc_bae.pdb", "heavy_chain":"B", "light_chain":"A", "antigen_chains":["E"], "affinity_data":["./data/binding_affinity/1mlc_LC_benchmarking_data.csv"], "receptor_chains":["E"], "ligand_chains":["B","A"], "chain_order":["B","A","E"], "epitope_chain":"E", "paratope_chain":"B"},
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  "1n8z":{"pdb":"1n8z_bac", "pdb_path":"./data/complex_structure/1n8z_bac.pdb", "heavy_chain":"B", "light_chain":"A", "antigen_chains":["C"], "affinity_data":["./data/binding_affinity/1n8z_benchmarking_data.csv"], "receptor_chains":["C"], "ligand_chains":["B","A"], "chain_order":["B","A","C"], "epitope_chain":"C", "paratope_chain":"B"},
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  "2fjg":{"pdb":"2fjg_hlv", "pdb_path":"./data/complex_structure/2fjg_hlv.pdb", "heavy_chain":"H", "light_chain":"L", "antigen_chains":["V"], "affinity_data":["./data/binding_affinity/2fjg_benchmarking_data.csv"], "receptor_chains":["V"], "ligand_chains":["H","L"], "chain_order":["H","L","V"], "epitope_chain":"V", "paratope_chain":"H"},
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  "3gbn":{"pdb":"3gbn_hlab", "pdb_path":"./data/complex_structure/3gbn_hlab.pdb", "heavy_chain":"H", "light_chain":"L", "antigen_chains":["A","B"], "affinity_data":["./data/binding_affinity/3gbn_h1_benchmarking_data.csv","./data/binding_affinity/3gbn_h9_benchmarking_data.csv"], "receptor_chains":["A","B"], "ligand_chains":["H","L"], "chain_order":["H","L","A","B"], "epitope_chain":"B", "paratope_chain":"H"},
 
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  "aayl49":{"pdb":"aayl49_bca", "pdb_path":"./data/complex_structure/AAYL49_bca.pdb", "heavy_chain":"B", "light_chain":"C", "antigen_chains":["A"], "affinity_data":["./data/binding_affinity/aayl49_benchmarking_data.csv"], "receptor_chains":["A"], "ligand_chains":["B","C"], "chain_order":["B","C","A"], "epitope_chain":"A", "paratope_chain":"B"},
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  "aayl49_ML":{"pdb":"aayl49_bca", "pdb_path":"./data/complex_structure/AAYL49_bca.pdb", "heavy_chain":"B", "light_chain":"C", "antigen_chains":["A"], "affinity_data":["./data/binding_affinity/aayl49_ML_benchmarking_data.csv"], "receptor_chains":["A"], "ligand_chains":["B","C"], "chain_order":["B","C","A"], "epitope_chain":"A", "paratope_chain":"B"},
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  "aayl51":{"pdb":"aayl51_bca", "pdb_path":"./data/complex_structure/AAYL51_bca.pdb", "heavy_chain":"B", "light_chain":"C", "antigen_chains":["A"], "affinity_data":["./data/binding_affinity/aayl51_benchmarking_data.csv"], "receptor_chains":["A"], "ligand_chains":["B","C"], "chain_order":["B","C","A"], "epitope_chain":"A", "paratope_chain":"B"},
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+ "1mhp":{"pdb":"1mhp_hla", "pdb_path":"./data/complex_structure/1mhp_hla.pdb", "heavy_chain":"H", "light_chain":"L", "antigen_chains":["A"], "affinity_data":["./data/binding_affinity/1mhp_benchmarking_data.csv"], "receptor_chains":["A"], "ligand_chains":["H","L"], "chain_order":["H","L","A"], "epitope_chain":"A", "paratope_chain":"H"},
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+ "4d5_her2":{"pdb":"1n8z_bac", "pdb_path":"./data/complex_structure/1n8z_bac.pdb", "heavy_chain":"B", "light_chain":"A", "antigen_chains":["C"], "affinity_data":[ "./data/binding_affinity/4d5_her2_benchmarking_data.csv"], "receptor_chains":["C"], "ligand_chains":["B","A"], "chain_order":["B","A","C"], "epitope_chain":"C", "paratope_chain":"B"},
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+ "5a12_ang2":{"pdb":"4zfg_hla", "pdb_path":"./data/complex_structure/4zfg_hla.pdb", "heavy_chain":"H", "light_chain":"L", "antigen_chains":["A"], "affinity_data":[ "./data/binding_affinity/5a12_ang2_benchmarking_data.csv"], "receptor_chains":["A"], "ligand_chains":["H","L"], "chain_order":["H","L","A"], "epitope_chain":"A", "paratope_chain":"H"},
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+ "5a12_vegf":{"pdb":"4zff_hld", "pdb_path":"./data/complex_structure/4zff_hld.pdb", "heavy_chain":"H", "light_chain":"L", "antigen_chains":["D"], "affinity_data":[ "./data/binding_affinity/5a12_vegf_benchmarking_data.csv"], "receptor_chains":["D"], "ligand_chains":["H","L"], "chain_order":["H","L","D"], "epitope_chain":"A", "paratope_chain":"D"},
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+ "aayl50_LC":{"pdb":"aayl50_bca", "pdb_path":"./data/complex_structure/AAYL50_bca.pdb", "heavy_chain":"B", "light_chain":"C", "antigen_chains":["A"], "affinity_data":["./data/binding_affinity/aayl50_LC_benchmarking_data.csv"], "receptor_chains":["A"], "ligand_chains":["B","C"], "chain_order":["B","C","A"], "epitope_chain":"A", "paratope_chain":"B"},
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+ "aayl52":{"pdb":"aayl52_bca", "pdb_path":"./data/complex_structure/AAYL52_bca.pdb", "heavy_chain":"B", "light_chain":"C", "antigen_chains":["A"], "affinity_data":["./data/binding_affinity/aayl52_benchmarking_data.csv"], "receptor_chains":["A"], "ligand_chains":["B","C"], "chain_order":["B","C","A"], "epitope_chain":"A", "paratope_chain":"B"},
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+ "g6_LC":{"pdb":"2fjg_hlv", "pdb_path":"./data/complex_structure/2fjg_hlv.pdb", "heavy_chain":"H", "light_chain":"L", "antigen_chains":["V"], "affinity_data":["./data/binding_affinity/g6_LC_benchmarking_data.csv"], "receptor_chains":["V"], "ligand_chains":["H","L"], "chain_order":["H","L","V"], "epitope_chain":"V", "paratope_chain":"H"}
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  }