metadata.json

{
  "n_records": 22020,
  "proteins": [
    "TPK1",
    "UBE2I",
    "SUMO1",
    "BRCA1_RING",
    "PTEN"
  ],
  "checkpoint": "prototype/v1_distill/epoch_9.pt",
  "esm_model": "facebook/esm2_t33_650M_UR50D",
  "fields": [
    "dms_score",
    "protein",
    "position",
    "wt_aa",
    "mut_aa",
    "wt_token",
    "mut_token",
    "esm_layers_wt",
    "esm_layers_mut",
    "esm_final_wt",
    "esm_final_mut",
    "esm_final_masked",
    "esm_final_at_pos_wt",
    "esm_final_at_pos_mut",
    "esm_final_at_pos_masked",
    "esm_at_pos_wt",
    "esm_at_pos_masked",
    "esm_at_pos_mut",
    "esm_logits_wt",
    "esm_logits_masked",
    "esm_logits_mut",
    "obs_logits_wt",
    "obs_logits_masked",
    "obs_logits_mut",
    "geo_wt",
    "geo_mut",
    "svd_S_wt",
    "svd_S_mut",
    "gate_wt",
    "gate_mut",
    "patchwork_wt",
    "patchwork_mut",
    "embed_wt",
    "embed_mut",
    "cos_to_anchors_wt",
    "tri_distances_wt",
    "nearest_anchor_wt",
    "soft_assignment_wt",
    "tri_gated_wt",
    "cos_to_anchors_mut",
    "tri_distances_mut",
    "nearest_anchor_mut",
    "soft_assignment_mut",
    "tri_gated_mut"
  ],
  "field_shapes": {
    "dms_score": [],
    "protein": "str",
    "position": [],
    "wt_aa": "str",
    "mut_aa": "str",
    "wt_token": [],
    "mut_token": [],
    "esm_layers_wt": [
      33,
      1280
    ],
    "esm_layers_mut": [
      33,
      1280
    ],
    "esm_final_wt": [
      1280
    ],
    "esm_final_mut": [
      1280
    ],
    "esm_final_masked": [
      1280
    ],
    "esm_final_at_pos_wt": [
      1280
    ],
    "esm_final_at_pos_mut": [
      1280
    ],
    "esm_final_at_pos_masked": [
      1280
    ],
    "esm_at_pos_wt": [
      33,
      1280
    ],
    "esm_at_pos_masked": [
      33,
      1280
    ],
    "esm_at_pos_mut": [
      33,
      1280
    ],
    "esm_logits_wt": [
      33
    ],
    "esm_logits_masked": [
      33
    ],
    "esm_logits_mut": [
      33
    ],
    "obs_logits_wt": [
      33
    ],
    "obs_logits_masked": [
      33
    ],
    "obs_logits_mut": [
      33
    ],
    "geo_wt": [
      768
    ],
    "geo_mut": [
      768
    ],
    "svd_S_wt": [
      5
    ],
    "svd_S_mut": [
      5
    ],
    "gate_wt": [
      32
    ],
    "gate_mut": [
      32
    ],
    "patchwork_wt": [
      256
    ],
    "patchwork_mut": [
      256
    ],
    "embed_wt": [
      256
    ],
    "embed_mut": [
      256
    ],
    "cos_to_anchors_wt": [
      32
    ],
    "tri_distances_wt": [
      32
    ],
    "nearest_anchor_wt": [],
    "soft_assignment_wt": [
      32
    ],
    "tri_gated_wt": [
      32
    ],
    "cos_to_anchors_mut": [
      32
    ],
    "tri_distances_mut": [
      32
    ],
    "nearest_anchor_mut": [],
    "soft_assignment_mut": [
      32
    ],
    "tri_gated_mut": [
      32
    ]
  }
}