---
license: mit
---

List of sample identifiers from [ATB](https://allthebacteria.org) deduplicated at varying levels of identity based on nucleotide sequence using [sketchlib](https://docs.rs/sketchlib/latest/sketchlib/) v0.2.4.

Sketching and distance calculation conducted with below commands
```
sketchlib sketch -f ${infile} -o ${outpref} --k-vals 21 -s 10000 --threads 11
sketchlib dist ${outpref} -k 21 --ani --threads 11 -o ${outpref}_dists.tsv
```

Where `infile` is a set of genome inputs in the format:
```
GENOME000001	/path/to/GENOME000001.fasta
GENOME000002	/path/to/GENOME000002.fasta
GENOME000003	/path/to/GENOME000003.fasta
```