""" GloVe embedding for fMRI language encoding. Uses the pre-trained GloVe 840B 300-d vectors. Download from: https://nlp.stanford.edu/data/glove.840B.300d.zip (~2.0 GB compressed) Place the decompressed text file at: lab3/data/raw/glove.840B.300d.txt Alternatively the smaller 6B / 100-d set works too: https://nlp.stanford.edu/data/glove.6B.zip → glove.6B.100d.txt (100-d) The pipeline mirrors bow.py and word2vec.py. """ import sys import os import numpy as np sys.path.insert(0, os.path.join(os.path.dirname(__file__), "..")) from preprocessing import downsample_word_vectors, make_delayed DEFAULT_GLOVE_PATH = os.path.join( os.path.dirname(__file__), "../../data/raw/glove.840B.300d.txt" ) GLOVE_DIM = 300 # change to 100 if using the 6B/100d file def load_glove(glove_path: str = DEFAULT_GLOVE_PATH) -> dict: """Load GloVe vectors from a plain-text file into a dict {word: np.ndarray}.""" print(f"Loading GloVe from {glove_path} …") embeddings = {} with open(glove_path, "r", encoding="utf-8") as f: for line in f: parts = line.rstrip().split(" ") word = parts[0] vec = np.array(parts[1:], dtype=np.float32) embeddings[word] = vec print(f"Loaded {len(embeddings):,} GloVe vectors (dim={next(iter(embeddings.values())).shape[0]})") return embeddings def get_glove_vectors(wordseqs: dict, glove: dict, dim: int = GLOVE_DIM) -> dict: """Look up each word token in the GloVe dictionary. OOV words receive a zero vector. Returns: {story: np.ndarray of shape (num_words, dim)} """ word_vectors = {} oov_total = 0 for story, ds in wordseqs.items(): vecs = [] for word in ds.data: w = word.lower() if w in glove: vecs.append(glove[w]) else: vecs.append(np.zeros(dim, dtype=np.float32)) oov_total += 1 word_vectors[story] = np.array(vecs, dtype=np.float32) if oov_total: print(f"GloVe OOV tokens: {oov_total}") return word_vectors def process_glove(stories_train, stories_test, wordseqs, glove_path=DEFAULT_GLOVE_PATH, dim=GLOVE_DIM, trim_start=5, trim_end=10, delays=range(1, 5)): """Full GloVe pipeline: embed → downsample → trim → lag.""" glove = load_glove(glove_path) all_stories = list(set(stories_train) | set(stories_test)) word_vectors = get_glove_vectors( {s: wordseqs[s] for s in all_stories}, glove, dim ) downsampled = downsample_word_vectors(all_stories, word_vectors, wordseqs) def _trim_and_lag(stories): mats = [] for story in stories: ds = downsampled[story] trimmed = ds[trim_start: len(ds) - trim_end] lagged = make_delayed(trimmed, list(delays)) mats.append(lagged) return np.vstack(mats) X_train = _trim_and_lag(stories_train) X_test = _trim_and_lag(stories_test) return X_train, X_test if __name__ == "__main__": import pickle wordseqs = pickle.load(open(sys.argv[1], "rb")) train_list = sys.argv[2].split(",") test_list = sys.argv[3].split(",") out_prefix = sys.argv[4] glove_path = sys.argv[5] if len(sys.argv) > 5 else DEFAULT_GLOVE_PATH X_train, X_test = process_glove(train_list, test_list, wordseqs, glove_path) np.save(f"{out_prefix}_train_glove_embeddings.npy", X_train) np.save(f"{out_prefix}_test_glove_embeddings.npy", X_test) print(f"Saved GloVe embeddings: train {X_train.shape}, test {X_test.shape}")