Datasets:
Add dataset README
Browse files
README.md
ADDED
|
@@ -0,0 +1,120 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
---
|
| 2 |
+
license: cc-by-nc-sa-4.0
|
| 3 |
+
task_categories:
|
| 4 |
+
- image-segmentation
|
| 5 |
+
tags:
|
| 6 |
+
- medical-imaging
|
| 7 |
+
- ultrasound
|
| 8 |
+
- fetal-imaging
|
| 9 |
+
- segmentation
|
| 10 |
+
- miccai-2024
|
| 11 |
+
pretty_name: ACOUSLIC-AI
|
| 12 |
+
size_categories:
|
| 13 |
+
- n<1K
|
| 14 |
+
---
|
| 15 |
+
|
| 16 |
+
# ACOUSLIC-AI Dataset
|
| 17 |
+
|
| 18 |
+
## Dataset Description
|
| 19 |
+
|
| 20 |
+
ACOUSLIC-AI (Abdominal Circumference Operator-agnostic UltraSound measurement in Low-Income Countries) is a dataset for the MICCAI 2024 challenge focused on fetal abdominal circumference measurement from ultrasound images.
|
| 21 |
+
|
| 22 |
+
### Dataset Summary
|
| 23 |
+
|
| 24 |
+
- **Source**: [Zenodo](https://zenodo.org/records/12697994)
|
| 25 |
+
- **Challenge**: [ACOUSLIC-AI Grand Challenge](https://acouslic-ai.grand-challenge.org/)
|
| 26 |
+
- **Version**: 1.1
|
| 27 |
+
- **License**: CC-BY-NC-SA 4.0
|
| 28 |
+
|
| 29 |
+
### Supported Tasks
|
| 30 |
+
|
| 31 |
+
- Fetal abdomen segmentation
|
| 32 |
+
- Abdominal circumference measurement
|
| 33 |
+
- Ultrasound image analysis
|
| 34 |
+
|
| 35 |
+
## Dataset Structure
|
| 36 |
+
|
| 37 |
+
```
|
| 38 |
+
.
|
| 39 |
+
├── images/
|
| 40 |
+
│ └── stacked_fetal_ultrasound/
|
| 41 |
+
│ └── *.mha (300 files, ~335MB each)
|
| 42 |
+
├── masks/
|
| 43 |
+
│ └── stacked_fetal_abdomen/
|
| 44 |
+
│ └── *.mha (300 files, ~335MB each)
|
| 45 |
+
└── circumferences/
|
| 46 |
+
└── fetal_abdominal_circumferences_per_sweep.csv
|
| 47 |
+
```
|
| 48 |
+
|
| 49 |
+
### Data Fields
|
| 50 |
+
|
| 51 |
+
**Images (.mha)**:
|
| 52 |
+
- 3D volumetric ultrasound stacks
|
| 53 |
+
- Format: MetaImage (.mha)
|
| 54 |
+
- Each file: ~335MB
|
| 55 |
+
|
| 56 |
+
**Masks (.mha)**:
|
| 57 |
+
- Segmentation masks with pixel values:
|
| 58 |
+
- 0: Background
|
| 59 |
+
- 1: Optimal plane (fetal abdomen)
|
| 60 |
+
- 2: Suboptimal plane
|
| 61 |
+
|
| 62 |
+
**Circumferences (CSV)**:
|
| 63 |
+
- `uuid`: Unique identifier matching image/mask filenames
|
| 64 |
+
- `subject_id`: Subject identifier
|
| 65 |
+
- `sweep_1_ac_mm` to `sweep_6_ac_mm`: Abdominal circumference measurements in mm
|
| 66 |
+
|
| 67 |
+
## Dataset Statistics
|
| 68 |
+
|
| 69 |
+
| Type | Count | Format | Size |
|
| 70 |
+
|------|-------|--------|------|
|
| 71 |
+
| Images | 300 | .mha | ~335MB each |
|
| 72 |
+
| Masks | 300 | .mha | ~335MB each |
|
| 73 |
+
| CSV | 1 | .csv | 24KB |
|
| 74 |
+
|
| 75 |
+
**Total size**: ~200GB
|
| 76 |
+
|
| 77 |
+
## Usage
|
| 78 |
+
|
| 79 |
+
```python
|
| 80 |
+
from huggingface_hub import snapshot_download
|
| 81 |
+
import SimpleITK as sitk
|
| 82 |
+
|
| 83 |
+
# Download dataset
|
| 84 |
+
local_dir = snapshot_download(
|
| 85 |
+
repo_id="Angelou0516/ACOUSLIC-AI",
|
| 86 |
+
repo_type="dataset"
|
| 87 |
+
)
|
| 88 |
+
|
| 89 |
+
# Load an image
|
| 90 |
+
image_path = f"{local_dir}/images/stacked_fetal_ultrasound/0199616b-bdeb-4119-97a3-a5a3571bd641.mha"
|
| 91 |
+
image = sitk.ReadImage(image_path)
|
| 92 |
+
array = sitk.GetArrayFromImage(image) # (D, H, W) numpy array
|
| 93 |
+
|
| 94 |
+
# Load corresponding mask
|
| 95 |
+
mask_path = f"{local_dir}/masks/stacked_fetal_abdomen/0199616b-bdeb-4119-97a3-a5a3571bd641.mha"
|
| 96 |
+
mask = sitk.ReadImage(mask_path)
|
| 97 |
+
mask_array = sitk.GetArrayFromImage(mask)
|
| 98 |
+
```
|
| 99 |
+
|
| 100 |
+
## Citation
|
| 101 |
+
|
| 102 |
+
If you use this dataset, please cite the original source:
|
| 103 |
+
|
| 104 |
+
```bibtex
|
| 105 |
+
@misc{acouslic_ai_2024,
|
| 106 |
+
title={ACOUSLIC-AI: Abdominal Circumference Operator-agnostic UltraSound measurement in Low-Income Countries},
|
| 107 |
+
year={2024},
|
| 108 |
+
publisher={Zenodo},
|
| 109 |
+
doi={10.5281/zenodo.12697994},
|
| 110 |
+
url={https://zenodo.org/records/12697994}
|
| 111 |
+
}
|
| 112 |
+
```
|
| 113 |
+
|
| 114 |
+
## License
|
| 115 |
+
|
| 116 |
+
This dataset is licensed under [CC-BY-NC-SA 4.0](https://creativecommons.org/licenses/by-nc-sa/4.0/).
|
| 117 |
+
|
| 118 |
+
## Acknowledgements
|
| 119 |
+
|
| 120 |
+
This dataset was created for the MICCAI 2024 ACOUSLIC-AI Challenge.
|