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README.md
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splits:
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- name: train
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num_bytes: 1152010120
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num_examples: 799
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- name: val
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num_bytes: 142411134
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num_examples: 100
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- name: test
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num_bytes: 144413008
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num_examples: 100
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download_size: 1438040809
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dataset_size: 1438834262
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configs:
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- config_name: default
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data_files:
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- split: train
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path: data/train-*
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- split: val
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path: data/val-*
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- split: test
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path: data/test-*
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---
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---
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license: other
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task_categories:
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- image-segmentation
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tags:
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- medical
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- endoscopy
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- colonoscopy
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- polyp
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- segmentation
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- bkai
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size_categories:
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- n<10K
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---
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# BKAI-IGH NeoPolyp (binary, MedCLIPSeg mirror)
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Re-hosted mirror of the **BKAI-IGH NeoPolyp "Small"** subset (Lan et al.,
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2021), originally released through the
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[BKAI-IGH NeoPolyp Kaggle competition](https://www.kaggle.com/c/bkai-igh-neopolyp/),
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intended for use with [EasyMedSeg](https://github.com/).
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This mirror is rebuilt from the
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[`TahaKoleilat/MedCLIPSeg`](https://huggingface.co/datasets/TahaKoleilat/MedCLIPSeg)
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HF dataset's `BKAI.zip` (the only freely-fetchable HF rehost we found that
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ships the masks). We chose this source because the canonical Kaggle URL
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requires Kaggle competition-acceptance + an API token, which is awkward
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for downstream automation.
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## Composition
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| Split | Images | With polyp |
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|---------|-------:|-----------:|
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| train | 799 | (computed) |
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| val | 100 | (computed) |
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| test | 100 | (computed) |
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| **All** | **999**| |
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Image dimensions: variable (~1280 × 950–1000 px), heterogeneous endoscopy
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frames in JPEG. The original Kaggle release contains 1,000 train (with
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masks) + 200 test (held-out masks); this mirror uses the 1,000 train pool
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re-split into 799/100/100. The 200-image canonical Kaggle test split with
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no public masks is **not** included.
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## Mask caveat — binary only
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The upstream MedCLIPSeg mirror saved the original
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3-channel RGB-coded semantic masks as **JPEG-compressed grayscale**.
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JPEG compression introduces boundary noise (we observed pixel values
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1–40 and 211–254 in addition to 0/255), and JPEG-on-label-map is
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inherently lossy.
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This mirror **thresholds at > 127** to recover a clean binary
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{0, 255} mask. **The 3-class
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(background / non-neoplastic polyp / neoplastic polyp) distinction in
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the original Kaggle PNGs is NOT recoverable from this source.**
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Use this mirror for **binary polyp segmentation** only. Pull the
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canonical Kaggle data directly if you need the 3-class formulation
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required to reproduce the NeoUNet / BlazeNeo benchmarks.
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## Schema
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| Column | Type | Description |
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|-------------|----------|---------------------------------------------|
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| `image` | `Image` | Source RGB frame (PNG bytes, variable size) |
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| `mask` | `Image` | Binary mask (`L` mode, 0/255) |
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| `image_id` | `string` | 32-char hex stem from the source filename |
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| `split` | `string` | `train` / `val` / `test` |
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| `has_polyp` | `bool` | `True` iff the mask contains any foreground |
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## License
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The original Kaggle release does not declare a public license; usage is
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implicitly governed by Kaggle competition rules ("research / academic use").
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The intermediate `TahaKoleilat/MedCLIPSeg` mirror redistributes under
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**CC-BY-NC-4.0** (mirror-imposed, not author-confirmed). Treat as
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**research / non-commercial only** until BKAI/IGH publishes a formal
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license.
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## Citation
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```bibtex
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@inproceedings{lan2021neounet,
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title = {{NeoUNet}: Towards Accurate Colon Polyp Segmentation
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and Neoplasm Detection},
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author = {Lan, Phan Ngoc and An, Nguyen Sy and Hang, Dao Viet
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and Long, Dao Van and Trung, Tran Quang
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and Thuy, Nguyen Thi and Sang, Dinh Viet},
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booktitle = {Advances in Visual Computing -- ISVC 2021},
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series = {Lecture Notes in Computer Science},
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volume = {13018},
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pages = {15--28},
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publisher = {Springer},
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year = {2021},
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doi = {10.1007/978-3-030-90436-4_2}
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}
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@article{an2022blazeneo,
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title = {{BlazeNeo}: Blazing Fast Polyp Segmentation
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and Neoplasm Detection},
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author = {An, Nguyen Sy and Lan, Phan Ngoc and Hang, Dao Viet
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and Long, Dao Van and Trung, Tran Quang
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and Thuy, Nguyen Thi and Sang, Dinh Viet},
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journal = {IEEE Access},
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volume = {10},
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pages = {43669--43684},
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year = {2022},
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doi = {10.1109/ACCESS.2022.3168693}
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}
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```
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