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README_original.txt
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NucMM (Mouse) Dataset Release
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- image.h5: micro-CT (uCT) image volume of mouse visual cortex
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- Image: image volumes for training and validation
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- Label: instance segmentation volumes for training and validation
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==========
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Train/val volume size: (192, 192, 192)
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Training volume start coordinates (4 volumes):
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0 200 200
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0 604 576
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508 200 576
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508 604 200
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Validation volume start coordinates (4 volumes):
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0 200 576
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0 604 200
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508 200 200
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508 604 576
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==========
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The instance segmentation label of the whole volume is release by request. Please check the grand challenge website (https://nucmm.grand-challenge.org/) for guidance to request the instance segmentation label.
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==========
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Citation:
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@inproceedings{lin2021nucmm,
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title={NucMM Dataset: 3D Neuronal Nuclei Instance Segmentation at Sub-Cubic Millimeter Scale},
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author={Lin, Zudi and Wei, Donglai and Petkova, Mariela D and Wu, Yuelong and Ahmed, Zergham and Zou, Silin and Wendt, Nils and Boulanger-Weill, Jonathan and Wang, Xueying and Dhanyasi, Nagaraju and others},
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booktitle={International Conference on Medical Image Computing and Computer-Assisted Intervention},
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pages={164--174},
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year={2021},
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organization={Springer}
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}
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