Upload README.txt with huggingface_hub

README.txt

@@ -0,0 +1,77 @@
+NucMM (Zebrafish) Dataset Release
+  - image.tif: electron microscopy (EM) image volume (downsampled from 4nm resolution)
+  - mask.h5: binary mask of the zebrafish brain region
+  - Image: image volumes for training and validation
+  - Label: instance segmentation volumes for training and validation
+
+==========
+Train/val volume size: (64, 64, 64)
+
+Training volume start coordinates (27 volumes):
+192 640 1408
+64 960 896
+192 384 960
+192 704 512
+192 960 832
+192 768 512
+64 448 960
+256 704 512
+192 512 704
+128 640 1088
+0 576 768
+320 704 640
+128 448 768
+64 384 832
+128 704 832
+64 576 640
+256 448 960
+256 640 832
+320 640 896
+256 768 1024
+128 384 768
+320 704 1088
+128 704 704
+192 448 832
+192 704 1728
+0 704 832
+128 640 256
+
+Validation volume start coordinates (27 volumes):
+256 768 896
+256 640 1088
+256 640 704
+256 1088 896
+64 768 512
+192 1088 832
+256 384 896
+128 384 896
+256 768 832
+192 384 896
+256 896 768
+128 640 704
+0 640 832
+320 448 832
+64 704 832
+256 832 832
+64 1024 896
+256 960 896
+64 512 1024
+64 832 1152
+128 832 896
+128 704 320
+64 896 1088
+256 384 832
+192 704 1472
+0 768 1024
+0 640 896
+
+==========
+Citation:
+@inproceedings{lin2021nucmm,
+  title={NucMM Dataset: 3D Neuronal Nuclei Instance Segmentation at Sub-Cubic Millimeter Scale},
+  author={Lin, Zudi and Wei, Donglai and Petkova, Mariela D and Wu, Yuelong and Ahmed, Zergham and Zou, Silin and Wendt, Nils and Boulanger-Weill, Jonathan and Wang, Xueying and Dhanyasi, Nagaraju and others},
+  booktitle={International Conference on Medical Image Computing and Computer-Assisted Intervention},
+  pages={164--174},
+  year={2021},
+  organization={Springer}
+}