metabolic_models/models.json

{
  "breast_cancer": {
    "metabolic_filename": "Breast_Cancer.mat",
    "version": "1.1",
    "format": "mat",
    "repo_dir": "human",
    "organism": "Homo sapiens",
    "number of reactions": 6561,
    "number of metabolites": 2919,
    "gene identifier type": "Ensemble gene id",
    "description": "Genome-scale metabolic model of human breast cancer metabolism."
  },
  "colon_adenocarcinoma": {
    "metabolic_filename": "Colon_Adenocarcinoma.mat",
    "version": "1.1",
    "format": "mat",
    "repo_dir": "human",
    "organism": "Homo sapiens",
    "number of reactions": 6646,
    "number of metabolites": 2872,
    "gene identifier type": "Ensemble gene id",
    "description": "Genome-scale metabolic model of human colon adenocarcinoma metabolism."
  },
  "glioblastoma": {
    "metabolic_filename": "Glioblastoma.mat",
    "version": "1.1",
    "format": "mat",
    "repo_dir": "human",
    "organism": "Homo sapiens",
    "number of reactions": 6102,
    "number of metabolites": 2460,
    "gene identifier type": "Ensemble gene id",
    "description": "Genome-scale metabolic model of human glioblastoma metabolism."
  },
  "low_grade_glioma": {
    "metabolic_filename": "Low_Grade_Glioma.mat",
    "version": "1.1",
    "format": "mat",
    "repo_dir": "human",
    "organism": "Homo sapiens",
    "number of reactions": 5940,
    "number of metabolites": 2460,
    "gene identifier type": "Ensemble gene id",
    "description": "Genome-scale metabolic model of human low grade glioma metabolism."
  },
  "lung_adenocarcinoma": {
    "metabolic_filename": "Lung_Adenocarcinoma.mat",
    "version": "1.1",
    "format": "mat",
    "repo_dir": "human",
    "organism": "Homo sapiens",
    "number of reactions": 6145,
    "number of metabolites": 2660,
    "gene identifier type": "Ensemble gene id",
    "description": "Genome-scale metabolic model of human lung adenocarcinoma metabolism."
  },
  "lung_squamous_cell_carcinoma": {
    "metabolic_filename": "Lung_Squamous_Cell_Carcinoma.mat",
    "version": "1.1",
    "format": "mat",
    "repo_dir": "human",
    "organism": "Homo sapiens",
    "number of reactions": 6170,
    "number of metabolites": 2606,
    "gene identifier type": "Ensemble gene id",
    "description": "Genome-scale metabolic model of human lung squamous cell carcinoma metabolism."
  },
  "ovarian_cancer": {
    "metabolic_filename": "Ovarian_Cancer.mat",
    "version": "1.1",
    "format": "mat",
    "repo_dir": "human",
    "organism": "Homo sapiens",
    "number of reactions": 5668,
    "number of metabolites": 2323,
    "gene identifier type": "Ensemble gene id",
    "description": "Genome-scale metabolic model of human ovarian cancer metabolism."
  },
  "pancreatic_adenocarcinoma": {
    "metabolic_filename": "Pancreatic_Adenocarcinoma.mat",
    "version": "1.1",
    "format": "mat",
    "repo_dir": "human",
    "organism": "Homo sapiens",
    "number of reactions": 6129,
    "number of metabolites": 2594,
    "gene identifier type": "Ensemble gene id",
    "description": "Genome-scale metabolic model of human pancreatic adenocarcinoma metabolism."
  },
  "prostate_cancer": {
    "metabolic_filename": "Prostate_Cancer.mat",
    "version": "1.1",
    "format": "mat",
    "repo_dir": "human",
    "organism": "Homo sapiens",
    "number of reactions": 7541,
    "number of metabolites": 3460,
    "gene identifier type": "Ensemble gene id",
    "description": "Genome-scale metabolic model of human prostate cancer metabolism."
  },
  "skin_cutaneous_melanoma": {
    "metabolic_filename": "Skin_Cutaneous_Melanoma.mat",
    "version": "1.1",
    "format": "mat",
    "repo_dir": "human",
    "organism": "Homo sapiens",
    "number of reactions": 6342,
    "number of metabolites": 2712,
    "gene identifier type": "Ensemble gene id",
    "description": "Genome-scale metabolic model of human skin cutaneous melanoma metabolism."
  },
  "kidney_renal_clear_cell_carcinoma": {
    "metabolic_filename": "Kidney_Renal_Clear_Cell_Carcinoma.mat",
    "version": "1.1",
    "format": "mat",
    "repo_dir": "human",
    "organism": "Homo sapiens",
    "number of reactions": 7002,
    "number of metabolites": 3043,
    "gene identifier type": "Ensemble gene id",
    "description": "Genome-scale metabolic model of human kidney_renal_clear_cell_carcinoma metabolism."
  },
  "human_model": {
    "metabolic_filename": "Generic_Human.mat",
    "version": "1.1",
    "format": "mat",
    "repo_dir": "human",
    "organism": "Homo sapiens",
    "number of reactions": 7002,
    "number of metabolites": 2993,
    "gene identifier type": "Ensemble gene id",
    "description": "Curated generic human metabolic model."
  },
  "mouse_model": {
    "metabolic_filename": "Mouse_model.mat",
    "version": "1.1",
    "format": "mat",
    "repo_dir": "mouse",
    "organism": "Mus musculus",
    "number of reactions": 6942,
    "number of metabolites": 2759,
    "gene identifier type": "mouse gene symbols",
    "description": "Genome-scale metabolic model of mouse metabolism."
  }
}