analysis/C_reports.py

"""Generate the high-level within-C report."""

import argparse
from pathlib import Path
from analysis.letters_reports import generate_letter

LETTER = "C"


def generate(
    results_dir,
    protocols=(),
    output_dir=None,
    spatial_codes_dir=None,
    profile_path=None,
):
    return generate_letter(
        LETTER, results_dir, protocols, output_dir, spatial_codes_dir, profile_path
    )


def main():
    p = argparse.ArgumentParser(description="Generate the high-level within-C report.")
    p.add_argument("--results-dir", default="/root/results/C")
    p.add_argument("--protocol", action="append", default=[])
    p.add_argument("--output-dir", default="/workspace/reports")
    p.add_argument("--spatial-codes-dir", default=None)
    a = p.parse_args()
    result = generate(a.results_dir, a.protocol, a.output_dir, a.spatial_codes_dir)
    print(f"wrote {result['path']}")


if __name__ == "__main__":
    main()