sources.csv

Dataset,Experiment,Dataset DOI / URL,Grouping,2D images,3D acquisitions,Training tiles
Desmosomes in A431 Cells FIB-SEM Volume,A431 Cell Desmosome FIB-SEM,https://openorganelle.janelia.org/datasets/aic_desmosome-1,Public,0,1,108
Desmosomes in A431 Cells - aic_desmosome-2 (FIB-SEM),A431 Cell Desmosome-ER FIB-SEM,https://doi.org/10.25378/janelia.22670176,Public,0,1,582
Desmosomes in A431 Cells - aic_desmosome-3 (FIB-SEM),A431 Cell Desmosome-ER FIB-SEM,https://doi.org/10.25378/janelia.22675078,Public,0,1,716
Data set 01 - Giardia lamblia adherent SBF-SEM series,Adherent Cell SBF-SEM,https://doi.org/10.5281/zenodo.11196419,Public,0,1,308
Data set 02 - Giardia lamblia adherent SBF-SEM series,Adherent Cell SBF-SEM,https://doi.org/10.5281/zenodo.11197168,Public,0,1,320
Data set 04 - HeLa adherent SBF-SEM series,Adherent Cell SBF-SEM,https://doi.org/10.5281/zenodo.11198586,Public,0,1,400
Data set 05 - HeLa adherent SBF-SEM series,Adherent Cell SBF-SEM,https://doi.org/10.5281/zenodo.11198691,Public,0,1,400
Data set 06 - HeLa adherent SBF-SEM series,Adherent Cell SBF-SEM,https://doi.org/10.5281/zenodo.11199320,Public,0,1,400
Data set 07 - HeLa adherent SBF-SEM series,Adherent Cell SBF-SEM,https://doi.org/10.5281/zenodo.11199433,Public,0,1,352
Data set 08 - HeLa adherent SBF-SEM series,Adherent Cell SBF-SEM,https://doi.org/10.5281/zenodo.11202406,Public,0,1,360
Data set 09 - HeLa adherent SBF-SEM series,Adherent Cell SBF-SEM,https://doi.org/10.5281/zenodo.11203027,Public,0,2,640
Data set 10 - HeLa adherent SBF-SEM series,Adherent Cell SBF-SEM,https://doi.org/10.5281/zenodo.11203782,Public,0,1,391
An Aedes aegypti mosquito antennal lobe EM dataset,Aedes aegypti Antennal Lobe ssTEM,https://doi.org/10.60533/boss-2025-gcyr,Public,0,1,400
Cali 2018 aging mouse cortex FIB-SEM volumes,Aging Mouse Cortex FIB-SEM,https://doi.org/10.5061/dryad.bh78sn5,Public,0,6,51
Horizontal cell connectivity in the anchovy retina - a 3D electron microscopic study - Scan 1,Anchovy Retina Horizontal Cell Connectivity,https://doi.org/10.6019/EMPIAR-12585,Public,0,1,210
Horizontal cell connectivity in the anchovy retina - a 3D electron microscopic study - Scan 2,Anchovy Retina Horizontal Cell Connectivity,https://doi.org/10.6019/EMPIAR-12586,Public,0,1,400
Horizontal cell connectivity in the anchovy retina - a 3D electron microscopic study - Scan 3,Anchovy Retina Horizontal Cell Connectivity,https://doi.org/10.6019/EMPIAR-12587,Public,0,1,400
Horizontal cell connectivity in the anchovy retina - a 3D electron microscopic study - Scan 4b,Anchovy Retina Horizontal Cell Connectivity,https://doi.org/10.6019/EMPIAR-12591,Public,0,1,288
Horizontal cell connectivity in the anchovy retina - a 3D electron microscopic study - Scan 5 part 1,Anchovy Retina Horizontal Cell Connectivity,https://doi.org/10.6019/EMPIAR-12592,Public,0,1,100
Horizontal cell connectivity in the anchovy retina - a 3D electron microscopic study - Scan 5 part 2,Anchovy Retina Horizontal Cell Connectivity,https://doi.org/10.6019/EMPIAR-12610,Public,0,1,78
Horizontal cell connectivity in the anchovy retina - a 3D electron microscopic study - Scan 6,Anchovy Retina Horizontal Cell Connectivity,https://doi.org/10.6019/EMPIAR-12609,Public,0,1,40
"Supporting data for ""Socially regulated developmental plasticity in the color pattern of an anemonefish""",Anemonefish Skin TEM,https://doi.org/10.5281/zenodo.16400562,Public,31,0,324

"SBF-SEM micrographs of A. algerae microsporidia spores, 45 min germination",Anncaliia algerae Spore Germination SBF-SEM,https://doi.org/10.6019/EMPIAR-11368,Public,0,1,400

"SBF-SEM micrographs of A. algerae microsporidia spores, 5 min germination",Anncaliia algerae Spore Germination SBF-SEM,https://doi.org/10.6019/EMPIAR-11367,Public,0,3,1200

"SBF-SEM micrographs of A. algerae spores, Ungerminated",Anncaliia algerae Ungerminated Spores SBF-SEM,https://doi.org/10.6019/EMPIAR-11369,Public,0,1,400

Dataset of microscopy (Confocal and electron) - Outer epidermal edges mediate cell-cell adhesion for tissue integrity in plants,Arabidopsis Hypocotyl Epidermis Cell Adhesion TEM,https://doi.org/10.5281/zenodo.15125559,Public,476,0,1895

Arabidopsis Root Phloem SBF-SEM Volumes,Arabidopsis Root Phloem SBF-SEM,https://doi.org/10.6019/EMPIAR-10442,Public,0,4,464

"Ultrastructure description of the spermatozoa of the Amazon bonytongue Arapaima gigas (Schinz, 1822)",Arapaima gigas Spermatozoa,https://doi.org/10.5281/zenodo.8359643,Public,20,0,19

BANC Adult Drosophila CNS EM Volume,BANC Adult Drosophila CNS Connectome ssTEM,https://doi.org/10.60533/boss-2025-941r,Public,0,1,220

Volume electron microscopy reveals bacterial endosymbiosis within host mitochondria,Bacterial Endosymbiosis in Host Mitochondria vEM,https://www.ebi.ac.uk/biostudies/studies/S-BIAD2413,Public,0,13,690

Borrelia burgdorferi between neighbouring endothelial cells in a lymphatic capillary,Borrelia burgdorferi in Mouse Skin Vasculature SBF-SEM,https://doi.org/10.6084/m9.figshare.30043093.v1,Public,0,1,51

Borrelia burgdorferi engulfed by a neutrophil,Borrelia burgdorferi in Mouse Skin Vasculature SBF-SEM,https://doi.org/10.6084/m9.figshare.30042721.v1,Public,0,1,100

Borrelia burgdorferi in contact with the pericyte projection and the fibroblast,Borrelia burgdorferi in Mouse Skin Vasculature SBF-SEM,https://doi.org/10.6084/m9.figshare.30042805.v1,Public,0,1,137

Borrelia burgdorferi partially enclosed within a lymphatic capillary of an endothelial cell,Borrelia burgdorferi in Mouse Skin Vasculature SBF-SEM,https://doi.org/10.6084/m9.figshare.30042739.v1,Public,0,1,19

Borrelia burgdorferi under a pericyte in dorsal skin,Borrelia burgdorferi in Mouse Skin Vasculature SBF-SEM,https://doi.org/10.6084/m9.figshare.30041983.v2,Public,0,1,54

Borrelia burgdorferi within a collagen bundle in mouse ear,Borrelia burgdorferi in Mouse Skin Vasculature SBF-SEM,https://doi.org/10.6084/m9.figshare.30042088.v1,Public,0,1,18

Immune cells migrating from the vein in dorsal skin,Borrelia burgdorferi in Mouse Skin Vasculature SBF-SEM,https://doi.org/10.6084/m9.figshare.30042151.v1,Public,0,1,400

Multisite adhesion of Borrelia burgdorferi to the blood capillary surface in dorsal skin,Borrelia burgdorferi in Mouse Skin Vasculature SBF-SEM,https://doi.org/10.6084/m9.figshare.30042646.v1,Public,0,1,80

Pericyte targeting by Borrelia burgdorferi,Borrelia burgdorferi in Mouse Skin Vasculature SBF-SEM,https://doi.org/10.6084/m9.figshare.30042550.v1,Public,0,1,64

Transcellular migration of Borrelia burgdorferi through a lymphatic capillary endothelial cell,Borrelia burgdorferi in Mouse Skin Vasculature SBF-SEM,https://doi.org/10.6084/m9.figshare.30043204.v1,Public,0,1,19

C. elegans Anterior Pharynx ssTEM,C. elegans Anterior Pharynx ssTEM,https://doi.org/10.60533/BOSS-2015-FBTX,Public,0,1,400

Witvliet 2020 Dataset 1 L1 C. elegans Brain,C. elegans Brain Postnatal Development,https://doi.org/10.60533/BOSS-2020-FQI7,Public,0,1,400

Witvliet 2020 Dataset 2 C. elegans Brain,C. elegans Brain Postnatal Development,https://doi.org/10.60533/BOSS-2020-FQI7,Public,0,1,400

Witvliet 2020 Dataset 3 L1 C. elegans Brain,C. elegans Brain Postnatal Development,https://doi.org/10.60533/BOSS-2020-FQI7,Public,0,1,400

Witvliet 2020 Dataset 4 C. elegans Brain,C. elegans Brain Postnatal Development,https://doi.org/10.60533/BOSS-2020-FQI7,Public,0,1,400

Witvliet 2020 Dataset 5 L2 C. elegans Brain,C. elegans Brain Postnatal Development,https://doi.org/10.60533/BOSS-2020-FQI7,Public,0,1,400

Witvliet 2020 Dataset 6 L3 C. elegans Brain,C. elegans Brain Postnatal Development,https://doi.org/10.60533/BOSS-2020-FQI7,Public,0,1,400

Witvliet 2020 Dataset 7 Young Adult C. elegans Brain,C. elegans Brain Postnatal Development,https://doi.org/10.60533/BOSS-2020-FQI7,Public,0,1,400

Witvliet 2020 Dataset 8 Young Adult C. elegans Brain,C. elegans Brain Postnatal Development,https://doi.org/10.60533/BOSS-2020-FQI7,Public,0,1,400

Entire C. elegans dauer larva (e1370) volume,C. elegans Dauer Larva FIB-SEM,https://doi.org/10.25378/janelia.20376591,Public,0,1,219

Yim Choe Bae 2024 C. elegans Dauer Nerve Ring TEM,C. elegans Dauer Nerve Ring TEM,https://doi.org/10.60533/BOSS-2023-RTPH,Public,0,1,400

White et al. 1986 C. elegans N2U Nerve Ring,C. elegans Nervous System Connectome TEM,https://doi.org/10.60533/boss-1986-745j,Public,0,1,239

Overexpression of an ALS-associated FUS mutation in C. elegans disrupts NMJ morphology and leads to defective neuromuscular transmission,C. elegans Neuromuscular Junction ALS-FUS ET,https://doi.org/10.5061/dryad.9ghx3ffg0,Public,0,6,37

COS-7 cell overexpressing ER and mitochondria markers for CLEM,COS-7 Cell ER & Mitochondria FIB-SEM,https://doi.org/10.25378/janelia.13123385,Public,0,1,71

"FIB-SEM Dataset (Obara + Nixon-Abell et al., 2023)",COS-7 Cell ER-Mitochondria Contact Site FIB-SEM,https://doi.org/10.25378/janelia.24502954.v1,Public,0,1,332

COS-7 Cell FIB-SEM Volume,COS-7 Cell FIB-SEM,https://doi.org/10.25378/janelia.24943716,Public,0,1,358

Interphase COS-7 Cell FIB-SEM Volume,COS-7 Cell FIB-SEM (Xu 2021),https://doi.org/10.25378/janelia.24944559,Public,0,1,208

C. elegans motor circuit serial-section EM volumes,Caenorhabditis elegans Motor Circuit SEM,https://doi.org/10.60533/BOSS-2022-1JI1,Public,0,5,1592

Quantitative subcellular reconstruction reveals a lipid mediated inter-organelle biogenesis network,Cal51 Cell Organelle Biogenesis Knockout FIB-SEM,https://doi.org/10.6019/EMPIAR-11695,Public,0,6,435

"SBF-SEM datasets related to the manuscript ""Trans-cellular tunnels induced by the fungal pathogen Candida albicans facilitate invasion through successive epithelial cells without host damage"" by Lachat et al, 2022.",Candida albicans Epithelial Invasion SBF-SEM,https://doi.org/10.5281/zenodo.5776104,Public,0,11,450

Enigmatic tubular ultrastructure in the bacterial defensive symbiont of the Asian citrus psyllid Diaphorina citri,Candidatus Profftella armatura Tubular Ultrastructure SBF-SEM,https://doi.org/10.6084/m9.figshare.29371466.v2,Public,0,2,80

Transmission Electron Microscopy Tilt Series Data of Chondrocyte Primary Cilia in situ,Chicken Chondrocyte Primary Cilia ET,https://doi.org/10.5281/zenodo.4592614,Public,0,1,1

Chicken Embryonic Heart Multiscale Imaging,Chicken Embryonic Heart SBF-SEM,https://doi.org/10.5061/dryad.hdr7sqvg5,Public,0,4,450

Dataset- Creating a Virtual Leaf,Chickpea Leaf SBF-SEM,https://doi.org/10.5281/zenodo.7943403,Public,0,2,160

Chlamydomonas Cryo-Slice and View on Thermo Scientific Helios 5 Hydra PFIB,Chlamydomonas Cryo FIB-SEM,https://doi.org/10.6019/EMPIAR-11275,Public,0,1,18

Cryo-FIB-SEM data on Chlamydomonas reinhardtii cells,Chlamydomonas reinhardtii Cryo-FIB-SEM,https://doi.org/10.6019/EMPIAR-10870,Public,0,2,12

Subcellular architecture collodaria photosymbiosis,Collodaria Photosymbiosis FIB-SEM,https://doi.org/10.6019/EMPIAR-10738,Public,0,7,506

FIB-SEM Chinese Hamster Ovary cell line sample dataset,Contextual High-throughput vEM Acquisition FIB-SEM,https://doi.org/10.6019/EMPIAR-12660,Public,0,1,96

FIB-SEM Mouse kidney tissue samples,Contextual High-throughput vEM Acquisition FIB-SEM,https://doi.org/10.6019/EMPIAR-12674,Public,0,1,24

FIB-SEM Nicotiana benthamiana epidermal cell,Contextual High-throughput vEM Acquisition FIB-SEM,https://doi.org/10.6019/EMPIAR-12659,Public,0,1,4

FIB-SEM Nicotiana benthamiana epidermal cell - conventional acquisition,Contextual High-throughput vEM Acquisition FIB-SEM,https://doi.org/10.6019/EMPIAR-12662,Public,0,1,36

FIB-SEM Rat brain tissue samples,Contextual High-throughput vEM Acquisition FIB-SEM,https://doi.org/10.6019/EMPIAR-12675,Public,0,1,88

FIB-SEM Trypanosoma cruzi cell samples,Contextual High-throughput vEM Acquisition FIB-SEM,https://doi.org/10.6019/EMPIAR-12661,Public,0,1,24

"3D imaging and quantitative analysis of digestive glands morphogenesis during crustacean development: application of micro-CT, light and electron microscopy",Crustacean Digestive Gland Morphogenesis TEM,https://doi.org/10.5281/zenodo.19369446,Public,7,0,7

Cultured mouse cerebellar granule neurons (jrc_mus-granule-neurons-2),Cultured Mouse Cerebellar Granule Neuron FIB-SEM (jrc_mus-granule-neurons-2),https://doi.org/10.25378/janelia.24222868,Public,0,1,79

Cultured mouse cerebellar granule neurons (jrc_mus-granule-neurons-3),Cultured Mouse Cerebellar Granule Neuron FIB-SEM (jrc_mus-granule-neurons-3),https://doi.org/10.25378/janelia.24222892,Public,0,1,397

DeepFocus Dataset 1.0,DeepFocus SEM Focus and Astigmatism Benchmark,https://doi.org/10.5281/zenodo.8416524,Public,47,0,47

P14 (d1) L4 Barrel Cortex,Developing Mouse Barrel Cortex Interneuron Synaptogenesis SBF-SEM,https://webknossos.org/datasets/P14_L4_AG_15-09-2015-5fce19f10100007c00cfaff0/view,Public,0,1,297

P14 (d2) L4 Barrel Cortex,Developing Mouse Barrel Cortex Interneuron Synaptogenesis SBF-SEM,https://webknossos.org/datasets/P14_L4_n2_AG_08-12-2016-5fce19f10100007c00cfafef/view,Public,0,1,311

P14 L2/3 Barrel Cortex,Developing Mouse Barrel Cortex Interneuron Synaptogenesis SBF-SEM,https://webknossos.org/datasets/P14_L23_AG_v3_17-03-2016-5fce1a690100007c00cfaff2/view,Public,0,1,240

P5 L4 Barrel Cortex,Developing Mouse Barrel Cortex Interneuron Synaptogenesis SBF-SEM,https://webknossos.org/datasets/2020-06-12-p5-align2-600590b70100001900bd2d33/view,Public,0,1,400

P7 (d1) L4 Barrel Cortex,Developing Mouse Barrel Cortex Interneuron Synaptogenesis SBF-SEM,https://webknossos.org/datasets/P7_L4_AG_27-05-2017_v1-5fce18c50100001900cfafec/view,Public,0,1,400

"P7 (d2, control) L4 Barrel Cortex",Developing Mouse Barrel Cortex Interneuron Synaptogenesis SBF-SEM,https://webknossos.org/datasets/2020-05-19-st045-align-600590860100008900bd2d31/view,Public,0,1,400

P9 (d1) L4 Barrel Cortex,Developing Mouse Barrel Cortex Interneuron Synaptogenesis SBF-SEM,https://webknossos.org/datasets/AG_P9_L4_30-06-2016-5fce193d0100006000cfafed/view,Public,0,1,400

P9 (d2) L4 Barrel Cortex,Developing Mouse Barrel Cortex Interneuron Synaptogenesis SBF-SEM,https://webknossos.org/datasets/P9_L4_OldVerios_24-12-2015_v1-5fce19b50100007a00cfafee/view,Public,0,1,328

"P9 (d3, control) L4 Barrel Cortex",Developing Mouse Barrel Cortex Interneuron Synaptogenesis SBF-SEM,https://webknossos.org/datasets/2020-06-06-st048-align-600590850100008000bd2d30/view,Public,0,1,400

P9 L2/3 Barrel Cortex,Developing Mouse Barrel Cortex Interneuron Synaptogenesis SBF-SEM,https://webknossos.org/datasets/2016-07-07_P9_L23_v1-5fce1a2d0100007a00cfaff1/view,Public,0,1,358

Developing retina in zebrafish 55 hpf larval eye,Developing Zebrafish Retina SBF-SEM,https://doi.org/10.6019/EMPIAR-11759,Public,0,1,36

Diplonemid Protist TEM Images,Diplonemid Protist TEM,https://doi.org/10.5281/zenodo.16882378,Public,46,0,210

Dividing HeLa Cell FIB-SEM at 11.2 min after anaphase onset,Dividing HeLa Cell FIB-SEM,https://doi.org/10.6019/EMPIAR-10109,Public,0,1,58

Dividing HeLa Cell FIB-SEM at 3.1 min after anaphase onset,Dividing HeLa Cell FIB-SEM,https://doi.org/10.6019/EMPIAR-10100,Public,0,1,186

Dividing HeLa Cell FIB-SEM at 3.9 min after anaphase onset,Dividing HeLa Cell FIB-SEM,https://doi.org/10.6019/EMPIAR-10102,Public,0,1,130

Dividing HeLa Cell FIB-SEM at 4.3 min after anaphase onset,Dividing HeLa Cell FIB-SEM,https://doi.org/10.6019/EMPIAR-10103,Public,0,1,68

Dividing HeLa Cell FIB-SEM at 6.3 min after anaphase onset,Dividing HeLa Cell FIB-SEM,https://doi.org/10.6019/EMPIAR-10101,Public,0,1,315

FIB-SEM of a dividing cell at 5.3 min after anaphase onset,Dividing HeLa Cell FIB-SEM,https://doi.org/10.6019/EMPIAR-10104,Public,0,1,63

FIB-SEM of a dividing cell at 5.7 min after anaphase onset,Dividing HeLa Cell FIB-SEM,https://doi.org/10.6019/EMPIAR-10105,Public,0,1,173

Drosophila brain: Fan-shaped body,Drosophila Brain Fan-Shaped Body FIB-SEM,https://doi.org/10.25378/janelia.24222598,Public,0,1,12

Drosophila brain: protocerebral bridge,Drosophila Brain Protocerebral Bridge FIB-SEM,https://doi.org/10.25378/janelia.24222652,Public,0,1,17

Drosophila Hemibrain FIB-SEM Volume,Drosophila Central Brain Hemibrain FIB-SEM,https://webknossos.org/datasets/flyem_hemibrain-6128c212010000a100ca0fd6/view,Public,0,1,333

Drosophila ellipsoid body,Drosophila Ellipsoid Body FIB-SEM,https://doi.org/10.25378/janelia.24221404,Public,0,1,12

Drosophila gut,Drosophila Gut TEM,https://doi.org/10.5281/zenodo.6567258,Public,1,0,8

Drosophila Third Instar Larva EM Volume,Drosophila Larva Nociceptive Circuit TEM,https://doi.org/10.60533/BOSS-2017-0DCV,Public,0,1,400

Drosophila Larval Abdominal ssTEM (acardona_abd1_5),Drosophila Larval CNS ssTEM,https://doi.org/10.60533/BOSS-2015-WYEW,Public,0,1,400

Drosophila Whole Larval CNS ssTEM (acardona_0111_8),Drosophila Larval CNS ssTEM,https://doi.org/10.60533/BOSS-2015-WYEW,Public,0,1,143

Morphology and ultrastructure of external sense organs of Drosophila larvae,Drosophila Larval External Sense Organ Ultrastructure,https://doi.org/10.5061/dryad.1vhhmgr1z,Public,0,10,21

Drosophila Medulla Seven-Column FIB-SEM Volume,Drosophila Medulla Seven-Column FIB-SEM,https://webknossos.org/datasets/FIB-25_wkw-5bd881bc010000f22e3db5fb/view,Public,0,1,85

Drosophila muscle,Drosophila Muscle TEM,https://doi.org/10.5281/zenodo.6569281,Public,1,0,0

Drosophila mushroom body,Drosophila Mushroom Body Alpha Lobe FIB-SEM,https://doi.org/10.25378/janelia.27075448,Public,0,1,522

Drosophila brain: Entire alpha and alpha' lobes of a mushroom body,Drosophila Mushroom Body Alpha Lobes FIB-SEM,https://doi.org/10.25378/janelia.16638268,Public,0,1,400

Drosophila Optic Medulla Serial-Section TEM Volume,Drosophila Optic Medulla Connectome TEM,https://doi.org/10.60533/BOSS-2013-49GZ,Public,0,1,400

TEM tomograms of Drosophila tracheal terminal cells during subcellular tube formation,Drosophila Tracheal Terminal Cell ET,https://doi.org/10.6019/EMPIAR-10434,Public,0,6,375

Drosophila ventral nerve cord (VNC),Drosophila Ventral Nerve Cord FIB-SEM,https://doi.org/10.25378/janelia.24944649,Public,0,1,229

Phelps et al. 2021 Drosophila Ventral Nerve Cord,Drosophila Ventral Nerve Cord TEM,https://doi.org/10.60533/BOSS-2021-T21Z,Public,0,1,238

FlyWire FAFBv14 EM Volume,Drosophila Whole-Brain Connectome (FlyWire FAFB) TEM,https://doi.org/10.60533/BOSS-2020-F81C,Public,0,1,400

Drosophila brain: Accessory calyx,Drosophila melanogaster Brain Accessory Calyx FIB-SEM,https://doi.org/10.25378/janelia.13114514,Public,0,1,400

Drosophila brain: Fan-shaped body,Drosophila melanogaster Brain Fan-Shaped Body FIB-SEM,https://doi.org/10.25378/janelia.13114529,Public,0,1,246

D. melanogaster whole larva ('igor'),Drosophila melanogaster Whole Larva FIB-SEM,https://doi.org/10.25378/janelia.26426824,Public,0,1,366

Light-activated molecular machines display broad spectrum antibacterial action,E. coli Light-Activated Molecular Machine Antibacterial TEM,https://doi.org/10.5281/zenodo.5888177,Public,4,0,4

Data from: Homeostasis of metabolites in Escherichia coli on transition from anaerobic to aerobic conditions and the transient secretion of pyruvate,E. coli PykF Immunogold TEM,https://doi.org/10.5061/dryad.1n542,Public,153,0,153

Data from: Three-dimensional reconstruction on cell level: case study elucidates the ultrastructure of the spinning apparatus of Embia sp. (Insecta: Embioptera),Embia Spinning Apparatus SBF-SEM,https://doi.org/10.5061/dryad.vk3fg,Public,0,1,400

Sample preparation and data collection for serial block face scanning electron microscopy of mammalian cell monolayers.,Encephalitozoon intestinalis-Infected Vero Cell SBF-SEM,https://doi.org/10.6019/EMPIAR-11683,Public,0,11,3924

An intranuclear bacterial parasite of deep-sea mussels expresses apoptosis inhibitors acquired from its host,Endonucleobacter Intranuclear Parasite in Deep-Sea Mussel TEM,https://doi.org/10.5281/zenodo.13144501,Public,6,0,30

Targeted volume Correlative Light and Electron Microscopy of environmental marine microorganisms,Ensiculifera tyrrhenica Dinoflagellate FIB-SEM,https://doi.org/10.6019/EMPIAR-11399,Public,0,1,32

Understanding airspace in leaves: 3D anatomy and directional tortuosity,Eucalyptus Leaf Airspace SBF-SEM,https://doi.org/10.5281/zenodo.4766931,Public,0,4,241

Data from: Open water camouflage via 'leaky' light guides in the midwater squid Galiteuthis,Galiteuthis Squid Eye Photophore TEM,https://doi.org/10.5061/dryad.g703s,Public,5,0,6

SBF-SEM Dataset of Guinea Pig Fetal Day 55-59 Psoas Muscle,Guinea Pig Fetal Psoas Muscle SBF-SEM,https://doi.org/10.5281/zenodo.1435581,Public,0,6,807

"3D reconstruction of the tubular system of preterm G55/57, mid term G58/60 and term G66/68 of guinea pig left ventricles",Guinea Pig Left Ventricle SBF-SEM,https://doi.org/10.6019/EMPIAR-10147,Public,0,3,65

Correlative 3D SBFSEM data from: Intermittent bulk release of human cytomegalovirus,HCMV-Infected Human Fibroblast SBF-SEM,https://doi.org/10.5061/dryad.5dv41ns7z,Public,0,1,400

HeLa cell miniLM CLEM SBF-SEM stack,HeLa Cell CLEM SBF-SEM,https://doi.org/10.5281/zenodo.192470,Public,0,1,20

CLEMSite COPB1 Knockdown FIB-SEM Cell Volumes,HeLa Cell COPB1 Knockdown FIB-SEM,https://doi.org/10.6019/EMPIAR-11314,Public,0,25,125

BFA-treated HeLa Cell FIB-SEM Volume,HeLa Cell Early Secretory Pathway FIB-SEM,https://doi.org/10.25378/janelia.13469814,Public,0,1,558

H89-treated HeLa Cell FIB-SEM Volume - cell 1,HeLa Cell Early Secretory Pathway FIB-SEM,https://doi.org/10.25378/janelia.13469964,Public,0,1,302

H89-treated HeLa Cell FIB-SEM Volume - cell 2,HeLa Cell Early Secretory Pathway FIB-SEM,https://doi.org/10.25378/janelia.13469970,Public,0,1,400

HeLa Cell with RUSH Cargo FIB-SEM Volume - jrc_hela-21,HeLa Cell Early Secretory Pathway FIB-SEM,https://doi.org/10.25378/janelia.13469550,Public,0,1,156

HeLa Cell with RUSH Cargo FIB-SEM Volume - jrc_hela-22,HeLa Cell Early Secretory Pathway FIB-SEM,https://doi.org/10.25378/janelia.13469901,Public,0,1,270

FIB-SEM of a HeLa cell,HeLa Cell FIB-SEM AMST Alignment,https://doi.org/10.6019/EMPIAR-10311,Public,0,1,355

Benchmark FIB SEM data of HeLa cells previously imaged by Zeiss LSM900 Airyscan microscopy,HeLa Cell FIB-SEM Benchmark,https://doi.org/10.6019/EMPIAR-10819,Public,0,1,190

Kinesin-1 activity recorded in living cells with a precipitating dye FIB-SEM data 1,HeLa Cell Kinesin-1 FIB-SEM,https://doi.org/10.5281/zenodo.4477917,Public,0,1,119

Serial Block Face SEM of HeLa cell pellet with 5 nm pixels and 50 nm slices (benchmark dataset),HeLa Cell Pellet SBF-SEM,https://doi.org/10.6019/EMPIAR-10106,Public,0,1,400

Serial Block Face SEM of HeLa cell pellet with 10 nm pixels and 50 nm slices (benchmark dataset),HeLa Cell Pellet SBF-SEM Benchmark,https://doi.org/10.6019/EMPIAR-10094,Public,0,1,400

REEP3 and REEP4 determine the tubular morphology of the endoplasmic reticulum during mitosis,HeLa Cell REEP3/4 Knockdown SBF-SEM,https://doi.org/10.6019/EMPIAR-10994,Public,0,2,0

Cropped regions from Serial Block Face SEM of HeLa cell pellet with 10 nm pixels and 50 nm slices (benchmark dataset),HeLa Cell SBF-SEM ROI Benchmark,https://doi.org/10.6019/EMPIAR-10478,Public,0,18,1080

"FIB-SEM imaging of control HeLa cells, cells expressing WT STARD3, and cells expressing the STARD3 FA/YA mutant",HeLa STARD3 ER-Lysosome Contact FIB-SEM,https://doi.org/10.6019/EMPIAR-13156,Public,0,3,0

FIB-SEM dataset showing localization of a Golgi matrix protein GM130 in human hepatocellular carcinoma cell (Huh-7),Huh-7 GM130 FIB-SEM,https://doi.org/10.6019/EMPIAR-11849,Public,0,1,62

Light and electron microscopy continuum-resolution imaging of 3D cell cultures,Human 3D Cell Culture FIB-SEM,https://doi.org/10.6019/EMPIAR-11380,Public,0,4,208

Human Airway Epithelium ALI Culture FIB-SEM,Human Airway Epithelium ALI Culture FIB-SEM,https://doi.org/10.25378/janelia.26039314,Public,0,1,82

Human Airway Epithelium ALI FIB-SEM,Human Airway Epithelium ALI FIB-SEM,https://doi.org/10.25378/janelia.26035168,Public,0,1,15

Human Airway Epithelium FIB-SEM Volume,Human Airway Epithelium FIB-SEM,https://doi.org/10.25378/janelia.25625346,Public,0,1,152

SARS-CoV-2 infection in human adult lung alveolar stem cells,Human Alveolar Stem Cell Culture SARS-CoV-2 TEM,https://doi.org/10.6019/EMPIAR-10533,Public,780,0,3104

2D Transmission Electron Microscopy Images,Human Brain Immersion-Fixation Brain-Banking Preservation,https://doi.org/10.5281/zenodo.13887923,Public,0,131,181

"SBF-SEM Donor 100, Depth 10um, Representative Area 2",Human Brain Immersion-Fixation Brain-Banking Preservation,https://doi.org/10.5281/zenodo.13888109,Public,0,1,225

"SBF-SEM Donor 100, Depth 10um, Representative area 1",Human Brain Immersion-Fixation Brain-Banking Preservation,https://doi.org/10.5281/zenodo.13888106,Public,0,2,585

"SBF-SEM Donor 100, Depth 20um, Representative Area 1",Human Brain Immersion-Fixation Brain-Banking Preservation,https://doi.org/10.5281/zenodo.13888113,Public,0,1,400

"SBF-SEM Donor 100, Depth 20um, Representative Area 2",Human Brain Immersion-Fixation Brain-Banking Preservation,https://doi.org/10.5281/zenodo.13888116,Public,0,1,400

"SBF-SEM Donor 57, Depth 25um",Human Brain Immersion-Fixation Brain-Banking Preservation,https://doi.org/10.5281/zenodo.13888085,Public,0,1,400

Serial Section Transmission Electron Microscopy,Human Brain Immersion-Fixation Brain-Banking Preservation,https://doi.org/10.5281/zenodo.13887963,Public,0,2,156

Serial Block Face - Scanning Electron Microscopy of brain microvessels with/without P. falciparum egress products,Human Brain Microvessel Model P. falciparum SBF-SEM,https://doi.org/10.6019/EMPIAR-12967,Public,0,2,156

A detailed ultrastructural examination of lung cryobiopsy samples from a COVID-19 patient case series — Data set 08,Human COVID-19 Lung Cryobiopsy Ultrastructure,https://doi.org/10.5281/zenodo.5682693,Public,3,0,180

A detailed ultrastructural examination of lung cryobiopsy samples from a COVID-19 patient case series — Data set 09,Human COVID-19 Lung Cryobiopsy Ultrastructure,https://doi.org/10.5281/zenodo.5682744,Public,3,0,564

A detailed ultrastructural examination of lung cryobiopsy samples from a COVID-19 patient case series — Data set 10,Human COVID-19 Lung Cryobiopsy Ultrastructure,https://doi.org/10.5281/zenodo.5682815,Public,4,0,53

COVID-19 Lung Cryobiopsy — Data Set 07: Alveolar organisation,Human COVID-19 Lung Cryobiopsy Ultrastructure,https://doi.org/10.5281/zenodo.5682656,Public,3,0,555

COVID-19 Lung Cryobiopsy — Data Set 11: patient C05,Human COVID-19 Lung Cryobiopsy Ultrastructure,https://doi.org/10.5281/zenodo.5682850,Public,1,0,77

COVID-19 Lung Cryobiopsy — Data Set 12: patient C04 C07,Human COVID-19 Lung Cryobiopsy Ultrastructure,https://doi.org/10.5281/zenodo.5682881,Public,2,0,491

COVID-19 Lung Cryobiopsy — Data Set 13: patient C03,Human COVID-19 Lung Cryobiopsy Ultrastructure,https://doi.org/10.5281/zenodo.5682980,Public,7,0,1122

COVID-19 Lung Cryobiopsy — Data Set 14: patient C04,Human COVID-19 Lung Cryobiopsy Ultrastructure,https://doi.org/10.5281/zenodo.5683073,Public,9,0,1240

COVID-19 Lung Cryobiopsy — Data Set 15: patient C05,Human COVID-19 Lung Cryobiopsy Ultrastructure,https://doi.org/10.5281/zenodo.5683122,Public,7,0,2324

COVID-19 Lung Cryobiopsy — Data Set 16: patient C06,Human COVID-19 Lung Cryobiopsy Ultrastructure,https://doi.org/10.5281/zenodo.5702444,Public,8,0,751

COVID-19 Lung Cryobiopsy — Data Set 17: patient C07,Human COVID-19 Lung Cryobiopsy Ultrastructure,https://doi.org/10.5281/zenodo.5702550,Public,8,0,1713

COVID-19 Lung Cryobiopsy — Data Set 18: patient C08,Human COVID-19 Lung Cryobiopsy Ultrastructure,https://doi.org/10.5281/zenodo.5702609,Public,5,0,860

A novel Argonaute 2-Niche at the midzone is essential for Cell-division integrity,Human Cytokinetic Protrusion TEM,https://doi.org/10.5281/zenodo.4270681,Public,2,0,2

Dynamic loading of human engineered heart tissue enhances contractile function and drives a desmosome-linked disease phenotype (TEM data),Human Engineered Heart Tissue Dynamic Loading TEM,https://doi.org/10.5281/zenodo.5056166,Public,168,0,2633

Human Fetal Kidney TEM Tilescans,Human Fetal Kidney Nephrogenesis TEM,https://doi.org/10.17867/10000192,Public,40,0,8130

Stitched Human Intestinal Organoid TEM,Human Intestinal Organoid SARS-CoV-2 TEM,https://doi.org/10.6019/EMPIAR-10404,Public,2,0,2544

Multiscale human liver tissue sample volume electron microscopy,Human Liver SBF-SEM,https://doi.org/10.6019/EMPIAR-13356,Public,0,1,400

Integrative imaging reveals SARS-CoV-2 induced reshaping of subcellular morphology,Human Lung Cell SARS-CoV-2 Subcellular Morphology,https://doi.org/10.6019/EMPIAR-10490,Public,0,9,691

SBF-SEM and FIB-SEM datasets and models of human macrophage and A431 cells,Human Macrophage & A431 Nuclear-Envelope Lipid Droplet EM,https://doi.org/10.6019/EMPIAR-13420,Public,0,7,147

Human Medial Entorhinal Cortex FIB-SEM Volumes,Human Medial Entorhinal Cortex FIB-SEM,https://doi.org/10.60533/boss-2024-ekc7,Public,0,61,223

Exploring the 3D structure of chromosomes in mitotic cells,Human Mitotic Chromosome SBF-SEM,https://doi.org/10.6019/EMPIAR-11953,Public,0,13,1834

A high-throughput electron tomography workflow reveals over-elongated centrioles in relapsed-refractory multiple myeloma,Human Multiple Myeloma Plasma Cell ET,https://doi.org/10.6019/EMPIAR-11243,Public,0,358,4576

SBF SEM images of a notoroid in longitudinal orientation containing TNE-ZsGreen+ notochord cells (Fig S26 part 1),Human Notoroid SBF-SEM,https://doi.org/10.6019/EMPIAR-12162,Public,0,10,1614

SBF SEM images of a notoroid in longitudinal orientation containing TNE-ZsGreen+ notochord cells (Fig S26 part 2),Human Notoroid SBF-SEM,https://doi.org/10.6019/EMPIAR-12163,Public,0,7,1721

SBF SEM images of a notoroid in longitudinal orientation containing TNE-ZsGreen+ notochord cells (Fig S26 part 3),Human Notoroid SBF-SEM,https://doi.org/10.6019/EMPIAR-12164,Public,0,3,680

SBF SEM images of a notoroid in transverse orientation (Fig S24),Human Notoroid SBF-SEM,https://doi.org/10.6019/EMPIAR-12161,Public,0,3,251

ME/CFS PBMC TEM images,Human PBMC ME/CFS TEM,https://doi.org/10.25740/zm622tr7008,Public,813,0,1465

nPOD autoantibody-positive pancreas nanotomy,Human Pancreatic Islet Type 1 Diabetes STEM,https://doi.org/10.17867/10000168,Public,17,0,5727

nPOD control pancreas nanotomy,Human Pancreatic Islet Type 1 Diabetes STEM,https://doi.org/10.17867/10000168,Public,21,0,6495

nPOD type 1 diabetes pancreas nanotomy,Human Pancreatic Islet Type 1 Diabetes STEM,https://doi.org/10.17867/10000168,Public,24,0,7261

nPOD type 2 diabetes pancreas nanotomy,Human Pancreatic Islet Type 1 Diabetes STEM,https://doi.org/10.17867/10000168,Public,2,0,800

SBF SEM of Human term placental villi,Human Placental Villi SBF-SEM,https://doi.org/10.6019/EMPIAR-10967,Public,0,11,2042

Plasma Cell Centriole Electron Tomography,Human Plasma Cell Centriole ET,https://doi.org/10.6019/EMPIAR-11505,Public,0,24,297

Human renal carcinoma cell,Human Renal Carcinoma FIB-SEM,https://doi.org/10.25378/janelia.27075529,Public,0,1,400

Spatial Intra- and Intercellular Alignment of Respiratory Cilia and its Relation to Function,Human Respiratory Cilia SBF-SEM,https://doi.org/10.6019/EMPIAR-10312,Public,0,16,1487

Images and annotations for training and testing of Glycogen-segmenter,Human Skeletal Muscle Glycogen Segmentation TEM,https://doi.org/10.5281/zenodo.18390286,Public,1135,0,1135

Human Skin & Mucosa STEM Nanotomy Maps,Human Skin & Mucosa Blistering Disease Nanotomy TEM,https://idr.openmicroscopy.org/study/idr0141/,Public,10,0,1362

Human Temporal Cortex H01,Human Temporal Cortex H01 SEM,https://webknossos.org/datasets/h01_20210601-6128c212010000a100ca0fd7/view,Public,0,1,400

Human iPSC-Derived Lens Organoids Recapitulate Lens Development and Morphogenesis In Vitro,Human iPSC-Derived Lens Organoid SBF-SEM,https://doi.org/10.6019/EMPIAR-12990,Public,0,4,1279

Hydra Endodermal Nerve Net Volume EM,Hydra vulgaris Endodermal Nerve Net SEM,https://doi.org/10.60533/BOSS-2025-08G4,Public,0,1,400

Electron microscopy images of thalamus from acutely hydrogen sulfide poisoned mice,Hydrogen Sulfide Poisoned Mouse Thalamus TEM,https://doi.org/10.5061/dryad.k3j9kd5ds,Public,13,0,226

Interleaved scanning electron microscopy: exploring native samples at the mesoscale. Adult mouse brain,Interleaved FIB-SEM of Native Cryogenic Samples,https://doi.org/10.6019/EMPIAR-12244,Public,0,1,80

Interleaved scanning electron microscopy: exploring native samples at the mesoscale. E. gracilis,Interleaved FIB-SEM of Native Cryogenic Samples,https://doi.org/10.6019/EMPIAR-12239,Public,0,1,16

Interphase HeLa cell (jrc_hela-1) FIB-SEM volume,Interphase HeLa Cell jrc_hela-1 FIB-SEM,https://doi.org/10.25378/janelia.13123415,Public,0,1,386

Interphase HeLa cell (jrc_hela-2) FIB-SEM volume,Interphase HeLa Cell jrc_hela-2 FIB-SEM,https://doi.org/10.25378/janelia.13114211,Public,0,1,337

Interphase HeLa cell (jrc_hela-3) FIB-SEM volume,Interphase HeLa Cell jrc_hela-3 FIB-SEM,https://doi.org/10.25378/janelia.13114244,Public,0,1,510

Isolated cardiomyocyte TEM images and segmentation masks,Isolated Rat Cardiomyocyte TEM,https://doi.org/10.5281/zenodo.17068504,Public,9,0,215

Immortalized T-Cells (Jurkat) FIB-SEM volume,Jurkat T-Cell FIB-SEM,https://doi.org/10.25378/janelia.13114259,Public,0,1,400

KB-E0010 juvenile rat cortical glia SBF-SEM volume,Juvenile Rat Cortical Glia SBF-SEM,https://webknossos.org/datasets/KB-E0010-685bf5a2010000db05b3b6dd/view,Public,0,1,68

Curved crease origami at cellular scales enables hyper-extensibility of Lacrymaria olor,Lacrymaria olor Cell Hyperextensibility TEM,https://doi.org/10.5061/dryad.4xgxd25g0,Public,4,6,108

Hildebrand 2017 Larval Zebrafish ssEM,Larval Zebrafish Brain SEM,https://doi.org/10.60533/BOSS-2017-VAW4,Public,0,2,275

Leishmania mexicana Cell Cycle SBF-SEM,Leishmania mexicana Cell Cycle SBF-SEM,https://doi.org/10.6019/EMPIAR-11826,Public,0,1,400

SBFSEM imaging of Leishmania haptomonad-like cells attached to plastic,Leishmania mexicana Haptomonad Adhesion,https://doi.org/10.6019/EMPIAR-11464,Public,0,1,400

SBFSEM imaging of Leishmania haptomonads on the stomodeal valve in the sand fly,Leishmania mexicana Haptomonad Adhesion,https://doi.org/10.6019/EMPIAR-11463,Public,0,1,400

Serial section electron tomography of a Leishmania haptomonad on the stomodeal valve in the sand fly,Leishmania mexicana Haptomonad Adhesion,https://doi.org/10.6019/EMPIAR-11467,Public,0,1,160

Serial section electron tomography of a Leishmania haptomonad-like cell attached to plastic,Leishmania mexicana Haptomonad Adhesion,https://doi.org/10.6019/EMPIAR-11468,Public,0,1,160

Leishmania mexicana whole cell electron tomography,Leishmania mexicana Whole-Cell ET,https://doi.org/10.5281/zenodo.10652021,Public,0,3,5

LimeSeg Test Datasets,LimeSeg HeLa Cell FIB-SEM Test Dataset,https://doi.org/10.5281/zenodo.1472859,Public,0,1,40

FAST-EM array tomography data of wild-type MCF-7 cells prepared with the rOTO protocol and stained with uranyl acetate,MCF-7 Cell FAST-EM Array Tomography,https://doi.org/10.6019/EMPIAR-12190,Public,0,55,17594

MICrONS Basil Mouse Visual Cortex,MICrONS Mouse Visual Cortex TEM,https://doi.org/10.60533/BOSS-2019-QF8A,Public,0,1,400

MICrONS Interneuron Mouse Visual Cortex,MICrONS Mouse Visual Cortex TEM,https://doi.org/10.60533/BOSS-2022-LGIZ,Public,0,1,400

MICrONS Minnie Mouse Visual Cortex,MICrONS Mouse Visual Cortex TEM,https://doi.org/10.60533/BOSS-2021-T0SY,Public,0,2,800

MICrONS Pinky100 Mouse Visual Cortex,MICrONS Mouse Visual Cortex TEM,https://doi.org/10.60533/BOSS-2021-GTXY,Public,0,1,400

Development of protocols for the first serial block-face scanning electron microscopy (SBF SEM) studies of bone tissue,Mammalian Bone Osteocyte SBF-SEM,https://doi.org/10.5258/SOTON/D1089,Public,0,1,80

ASEM/incasem FIB-SEM Cell Volumes,Mammalian Cell Organelle Segmentation FIB-SEM,https://open.quiltdata.com/b/asem-project/tree/datasets/,Public,0,34,712

Human H5 L2/3 STG multiSEM Volume,Mammalian Cortex Connectomics,https://webknossos.org/datasets/H5_10_270um_L23_NH_NJ_extended_Aug22_2021_v2-62b17edd010000f70075d7ba/view,Public,0,1,82

Human H5-10 Superior Temporal Gyrus Volume,Mammalian Cortex Connectomics,https://webknossos.org/datasets/H5_10_270um_final_v1-62b17f91010000ef0075d7bf/view,Public,0,1,236

Human L2/3 IFG H6 4S Volume,Mammalian Cortex Connectomics,https://webknossos.org/datasets/H6_4S_FCx_VG_synapses_v1_typ_soma_exclusion_v2-62b17fcd010000eb0075d7c0/view,Public,0,1,400

Human L2/3 STG SBEM Volume,Mammalian Cortex Connectomics,https://webknossos.org/datasets/H5_5_AMK_2021-st700_segmentation_v1_typ_soma_excl_v1-62b17f19010000aa0075d7bc/view,Public,0,1,400

Macaque L2/3 (S1) SBF-SEM Volume,Mammalian Cortex Connectomics,https://webknossos.org/datasets/Mk1_F6_L23_JS_segmentation_v2_typ_soma_excl-62b17f19010000aa0075d7bb/view,Public,0,1,324

Macaque L2/3 STG SBF-SEM Volume,Mammalian Cortex Connectomics,https://webknossos.org/datasets/Mk1_T2_STG_VG_segmentation_v1_typ_soma_exclusion_v1-62b17f55010000eb0075d7be/view,Public,0,1,400

Mouse A2 L2/3 SBF-SEM Volume,Mammalian Cortex Connectomics,https://webknossos.org/datasets/Mouse_A2_L23_AMK_rotated-62b17edd010000f20075d7b9/view,Public,0,1,400

Mouse L2/3 PPC SBEM Volume,Mammalian Cortex Connectomics,https://webknossos.org/datasets/ppcAK99_76x79_segmentation_v1_typ_soma_excl_v1-62b18045010000020175d7c2/view,Public,0,1,174

Mouse L2/3 S1 SBEM Volume,Mammalian Cortex Connectomics,https://webknossos.org/datasets/ex144_st08x2_l23_segmentation_v6_typ_soma_excl_v1-62b19325010000860033e7c9/view,Public,0,1,332

Mouse V2 L2/3 SBEM Volume,Mammalian Cortex Connectomics,https://webknossos.org/datasets/V2_102_l23_ak_straightenedPosthoc_segmentation_v1_typ_soma_excl_v1-62b18081010000f50075d7c3/view,Public,0,1,261

Light and transmission electron microscopic images for quantitative lung morphology of mechanically ventilated rat lungs.,Mechanically Ventilated Rat Lung TEM,https://doi.org/10.5281/zenodo.3738928,Public,5196,0,5179

DeepContact training data,Membrane Contact Site EM Training Data,https://doi.org/10.6084/m9.figshare.19898404.v3,Public,269,0,601

MitoEM 2.0: A Benchmark for Challenging 3D Mitochondria Instance Segmentation from EM Images,MitoEM 2.0 3D Mitochondria Benchmark,https://doi.org/10.5281/zenodo.17613832,Public,0,45,463

Rules of engagement for cohesin and condensin complexes during mitotic chromosome formation,Mitotic Chromosome Condensin-Cohesin SBF-SEM,https://doi.org/10.6019/EMPIAR-11919,Public,0,4,523

Mitotic HeLa cell,Mitotic HeLa Cell FIB-SEM,https://doi.org/10.25378/janelia.13114472,Public,0,1,400

volume EM dataset of the 5-day-old Mnemiopsis leidyi aboral organ,Mnemiopsis leidyi Aboral Organ ssET,https://doi.org/10.6019/EMPIAR-13030,Public,0,1,167

Diabetic Human Capillary 1,Mouse & Human Diabetic Retinal Capillary SBF-SEM,https://doi.org/10.5281/zenodo.15164577,Public,0,1,244

Diabetic Human Capillary 2,Mouse & Human Diabetic Retinal Capillary SBF-SEM,https://doi.org/10.5281/zenodo.15164581,Public,0,1,36

Diabetic Human Capillary 3,Mouse & Human Diabetic Retinal Capillary SBF-SEM,https://doi.org/10.5281/zenodo.15164589,Public,0,1,124

Diabetic Mouse 1 Capillary 1,Mouse & Human Diabetic Retinal Capillary SBF-SEM,https://doi.org/10.5281/zenodo.15164369,Public,0,1,198

Diabetic Mouse 1 Capillary 2,Mouse & Human Diabetic Retinal Capillary SBF-SEM,https://doi.org/10.5281/zenodo.15164375,Public,0,1,86

Diabetic Mouse 1 Capillary 3,Mouse & Human Diabetic Retinal Capillary SBF-SEM,https://doi.org/10.5281/zenodo.15164386,Public,0,1,26

Diabetic Mouse 2 Capillary 1,Mouse & Human Diabetic Retinal Capillary SBF-SEM,https://doi.org/10.5281/zenodo.15164392,Public,0,1,141

Diabetic Mouse 2 Capillary 2,Mouse & Human Diabetic Retinal Capillary SBF-SEM,https://doi.org/10.5281/zenodo.15164395,Public,0,1,196

Diabetic Mouse 2 Capillary 3,Mouse & Human Diabetic Retinal Capillary SBF-SEM,https://doi.org/10.5281/zenodo.15164403,Public,0,1,189

Diabetic Mouse 3 Capillary 1,Mouse & Human Diabetic Retinal Capillary SBF-SEM,https://doi.org/10.5281/zenodo.15164465,Public,0,1,84

Diabetic Mouse 3 Capillary 2,Mouse & Human Diabetic Retinal Capillary SBF-SEM,https://doi.org/10.5281/zenodo.15164473,Public,0,1,244

Diabetic Mouse 3 Capillary 3,Mouse & Human Diabetic Retinal Capillary SBF-SEM,https://doi.org/10.5281/zenodo.15164479,Public,0,1,124

Non-diabetic Human Capillary 1,Mouse & Human Diabetic Retinal Capillary SBF-SEM,https://doi.org/10.5281/zenodo.15164516,Public,0,1,188

Non-diabetic Human Capillary 2,Mouse & Human Diabetic Retinal Capillary SBF-SEM,https://doi.org/10.5281/zenodo.15164547,Public,0,1,185

Non-diabetic Human Capillary 3,Mouse & Human Diabetic Retinal Capillary SBF-SEM,https://doi.org/10.5281/zenodo.15164557,Public,0,1,188

Non-diabetic Mouse 1 Capillary 1,Mouse & Human Diabetic Retinal Capillary SBF-SEM,https://doi.org/10.5281/zenodo.15163921,Public,0,1,33

Non-diabetic Mouse 1 Capillary 2,Mouse & Human Diabetic Retinal Capillary SBF-SEM,https://doi.org/10.5281/zenodo.15163977,Public,0,1,108

Non-diabetic Mouse 1 Capillary 3,Mouse & Human Diabetic Retinal Capillary SBF-SEM,https://doi.org/10.5281/zenodo.15164033,Public,0,1,162

Non-diabetic Mouse 2 Capillary 1,Mouse & Human Diabetic Retinal Capillary SBF-SEM,https://doi.org/10.5281/zenodo.15164075,Public,0,1,136

Non-diabetic Mouse 2 Capillary 2,Mouse & Human Diabetic Retinal Capillary SBF-SEM,https://doi.org/10.5281/zenodo.15164081,Public,0,1,184

Non-diabetic Mouse 2 Capillary 3,Mouse & Human Diabetic Retinal Capillary SBF-SEM,https://doi.org/10.5281/zenodo.15164210,Public,0,1,104

Non-diabetic Mouse 3 Capillary 1,Mouse & Human Diabetic Retinal Capillary SBF-SEM,https://doi.org/10.5281/zenodo.15164220,Public,0,1,168

Non-diabetic Mouse 3 Capillary 2,Mouse & Human Diabetic Retinal Capillary SBF-SEM,https://doi.org/10.5281/zenodo.15164263,Public,0,1,212

Non-diabetic Mouse 3 Capillary 3,Mouse & Human Diabetic Retinal Capillary SBF-SEM,https://doi.org/10.5281/zenodo.15164279,Public,0,1,292

2D and 3D instance segmentation of nuclei from volume electron microscopy data,Mouse & Human Nuclei Instance Segmentation vEM,https://www.ebi.ac.uk/biostudies/studies/S-BIAD2822,Public,10,2,0

Mouse V1 Layer 2/3 P105 EM Volume,Mouse & Macaque Visual Cortex Synapse Development SEM,https://doi.org/10.60533/boss-2023-0s41,Public,0,1,400

Mouse V1 Layer 2/3 P523 EM Volume,Mouse & Macaque Visual Cortex Synapse Development SEM,https://doi.org/10.60533/boss-2023-0s41,Public,0,1,400

Mouse V1 Layer 4 P105 EM Volume,Mouse & Macaque Visual Cortex Synapse Development SEM,https://doi.org/10.60533/boss-2023-0s41,Public,0,1,400

Mouse V1 Layer 4 P523 EM Volume,Mouse & Macaque Visual Cortex Synapse Development SEM,https://doi.org/10.60533/boss-2023-0s41,Public,0,1,400

Mouse V1 Layer 4 P6 EM Volume,Mouse & Macaque Visual Cortex Synapse Development SEM,https://doi.org/10.60533/boss-2023-0s41,Public,0,1,400

Rhesus Macaque V1 Layer 2/3 P3000 EM Volume,Mouse & Macaque Visual Cortex Synapse Development SEM,https://doi.org/10.60533/boss-2023-0s41,Public,0,1,400

Rhesus Macaque V1 Layer 2/3 P7 EM Volume,Mouse & Macaque Visual Cortex Synapse Development SEM,https://doi.org/10.60533/boss-2023-0s41,Public,0,1,400

Rhesus Macaque V1 Layer 2/3 P75 EM Volume,Mouse & Macaque Visual Cortex Synapse Development SEM,https://doi.org/10.60533/boss-2023-0s41,Public,0,1,400

Rhesus Macaque V1 Layer 4 P3000 EM Volume,Mouse & Macaque Visual Cortex Synapse Development SEM,https://doi.org/10.60533/boss-2023-0s41,Public,0,1,400

Mouse Embryonic Fibroblast (cryo-TEM),Mouse & Zebrafish Virtual Nanoscopy Gigapixel TEM,https://idr.openmicroscopy.org/study/idr0053/,Public,1,0,71

Zebrafish Embryo (sagittal section),Mouse & Zebrafish Virtual Nanoscopy Gigapixel TEM,https://idr.openmicroscopy.org/study/idr0053/,Public,1,0,200

Plasma membrane remodeling determines adipocyte expansion and mechanical adaptability - CAV1 knockout,Mouse Adipocyte Caveolin-1 KO/WT/Y14F Immunogold TEM,https://doi.org/10.5281/zenodo.13880353,Public,17,0,607

Plasma membrane remodeling determines adipocyte expansion and mechanical adaptability - Cav1 Y14F,Mouse Adipocyte Caveolin-1 KO/WT/Y14F Immunogold TEM,https://doi.org/10.5281/zenodo.13880329,Public,27,0,1069

Plasma membrane remodeling determines adipocyte expansion and mechanical adaptability - Wild-type,Mouse Adipocyte Caveolin-1 KO/WT/Y14F Immunogold TEM,https://doi.org/10.5281/zenodo.13880307,Public,17,0,685

Basolateral Amygdala Synapse Serial-Section TEM,Mouse Basolateral Amygdala Alpha-Synuclein Aggregation TEM,https://doi.org/10.60533/boss-2024-3x51,Public,0,16,95

Benchmarking Anisotropic vEM Evaluation for Axial Super-Resolution (BRAVE-ASR),Mouse Brain Axial Super-Resolution Benchmark FIB-SEM,https://doi.org/10.5281/zenodo.17299282,Public,0,2,6

Multiregional blood-brain barrier phenotyping identifies the prefrontal cortex as the most vulnerable region to ageing in mice - Dataset,Mouse Brain Blood-Brain Barrier Aging TEM,https://doi.org/10.5281/zenodo.18669865,Public,174,0,692

SEM images of Mouse brain tissue sample,Mouse Brain FIB-SEM,https://doi.org/10.6019/EMPIAR-12581,Public,0,1,15

"SBF-SEM Dataset of ""Breaking Free from the Acquisition Dogma for Volume Electron Microscopy""",Mouse Brain VEM Denoising SBF-SEM,https://doi.org/10.5281/zenodo.17082440,Public,0,5,660

Benchmark TEM data of mouse brain previously imaged by Nikon confocal microscopy,Mouse Brain vCLEM,https://doi.org/10.6019/EMPIAR-12850,Public,6,3,589

Mouse CA1 Hippocampus FIB-SEM Volume,Mouse CA1 Hippocampus FIB-SEM,https://www.epfl.ch/labs/cvlab/data/data-em/,Public,0,1,14

Bloss 2018 Mouse CA1 ssTEM,Mouse CA1 Hippocampus ssTEM,https://doi.org/10.60533/BOSS-2018-EFTV,Public,0,1,400

Cardiac Microvascular Injury I/R & H/R Validation TEM,Mouse Cardiac Microvascular Ischemia/Reperfusion TEM,https://doi.org/10.5281/zenodo.17137494,Public,11,0,66

Cultured Mouse Cerebellar Granule Neurons,Mouse Cerebellar Granule Neuron FIB-SEM (jrc_mus-granule-neurons-1),https://doi.org/10.25378/janelia.24222844,Public,0,1,288

Wilson 2019 Mouse Cerebellum ATUM-SEM Volumes,Mouse Cerebellum Postnatal Development SEM,https://doi.org/10.60533/BOSS-2019-KMFO,Public,0,2,791

Mouse Cerebellum SBF-SEM,Mouse Cerebellum SBF-SEM,https://doi.org/10.60533/BOSS-2023-3DLD,Public,0,1,400

A large-scale transmission electron microscopy dataset of an adult mouse cerebellum,Mouse Cerebellum ssTEM,https://doi.org/10.60533/BOSS-2022-9RSJ,Public,0,1,400

Mouse cerebral cortex (jrc_mus-cortex-3),Mouse Cerebral Cortex FIB-SEM,https://doi.org/10.25378/janelia.28754702,Public,0,1,400

FluoEM mouse cortex SBEM volume,Mouse Cerebral Cortex SBF-SEM,https://webknossos.org/datasets/FluoEM_2016-05-26_FD0144-2_v2s2s-5abb89f348d7a73cea448019/view,Public,0,1,399

Mouse Cortex SBEM Volume (2012-11-23_ex144_st08x2),Mouse Cerebral Cortex SBF-SEM (ex144),https://webknossos.org/datasets/2012-11-23_ex144_st08x2-5fce1a690100007c00cfaff3/view,Public,0,1,290

Mouse choroid plexus (jrc_choroid-plexus-2),Mouse Choroid Plexus FIB-SEM (jrc_choroid-plexus-2),https://doi.org/10.25378/janelia.13123427,Public,0,1,150

Mouse choroid plexus (jrc_mus-choroid-plexus-3),Mouse Choroid Plexus FIB-SEM (jrc_mus-choroid-plexus-3),https://doi.org/10.25378/janelia.29114576,Public,0,1,400

Three-Dimensional Reconstructions of Mouse Circumvallate Taste Buds Using Serial Blockface Scanning Electron Microscopy: I. Cell Types and the Apical Region of the Taste Bud,Mouse Circumvallate Taste Bud SBF-SEM,https://doi.org/10.6019/EMPIAR-10331,Public,0,2,800

Mouse Cochlea Unexposed M1 SBEM Volume,Mouse Cochlea Mitochondria SBF-SEM,https://webknossos.org/datasets/HuaLab-CBA_Ca-mouse-unexposed-M1-652d442501000053049c0270/view,Public,0,1,400

Mouse Cochlea Unexposed M2 SBEM Volume,Mouse Cochlea Mitochondria SBF-SEM,https://webknossos.org/datasets/HuaLab-CBA_Ca-mouse-unexposed-M2-652d563301000068049c066e/view,Public,0,1,400

Probing the role of synaptic adhesion molecule RTN4RL2 in setting up cochlear connectivity,Mouse Cochlea RTN4RL2 KO SBF-SEM,https://doi.org/10.6019/EMPIAR-13506,Public,0,3,1185

Mouse Cochlea SBF-SEM Neural Circuitry Volume,Mouse Cochlea SBF-SEM,https://webknossos.org/datasets/HuaLab-CBA-mice-cochlea-mid-7w-5ff2feb90100001800af8d3c/view,Public,0,1,443

Mouse Organ of Corti Cochlea SBF-SEM - 200um Subvolume,Mouse Cochlea SBF-SEM,https://webknossos.org/datasets/HuaLab-CBA-mice-cochlea-mid-7w-200um-603df5810100001a0045ca5e/view,Public,0,1,402

Mouse Ventral Cochlear Nucleus SBF-SEM Volume,Mouse Cochlear Nucleus SBF-SEM,https://doi.org/10.60533/boss-2023-yw23,Public,0,1,320

Conjugate electron microscopy and array tomography,Mouse Cortex Conjugate Array Tomography,https://doi.org/10.60533/BOSS-2015-EJSN,Public,0,3,202

SmartEM Mouse Cortex 10x10 Fused EM Volume,Mouse Cortex SEM,https://doi.org/10.60533/boss-2023-4w35,Public,0,1,199

Mouse Anterior Cingulate Cortex (ACC) SBEM Volume,Mouse Cortical Areas SBF-SEM,https://webknossos.org/datasets/JO_ACC_Z_straightenedPosthoc-5c1cd43801000026708c2783/view,Public,0,1,273

Mouse Lateral Parietal Association (LPtA) SBEM Volume,Mouse Cortical Areas SBF-SEM,https://webknossos.org/datasets/2016-05-26_FD0144-2_v2s2s_full-5c1ede340100007c838c3579/view,Public,0,1,6

Mouse Posterior Parietal Cortex (PPC) SBEM Volume,Mouse Cortical Areas SBF-SEM,https://webknossos.org/datasets/2017-04-03_ppcAK99_76x79-5c1cd439010000e66f8c2786/view,Public,0,1,151

Mouse Posterior Parietal Cortex (PPC-2) SBEM Volume,Mouse Cortical Areas SBF-SEM,https://webknossos.org/datasets/AK_CorrelativeExperiment06469_P57_st003_st004-5c1cd4380100004f6f8c2784/view,Public,0,1,400

Mouse Primary Somatosensory Cortex (S1) SBEM Volume,Mouse Cortical Areas SBF-SEM,https://webknossos.org/datasets/2012-11-23_ex144_st08x2New-5c1cd439010000e66f8c2787/view,Public,0,1,400

Mouse Secondary Visual Cortex (V2) SBEM Volume,Mouse Cortical Areas SBF-SEM,https://webknossos.org/datasets/V2_102_l23_ak_straightenedPosthoc-5c1cd4380100004f6f8c2785/view,Public,0,1,398

Mouse Cremaster Endothelial Cell CLXEM,Mouse Cremaster Endothelial Cell SBF-SEM,https://doi.org/10.6019/EMPIAR-11958,Public,0,1,178

Cytotoxic T Lymphocyte Attacking ID8 Ovarian Cancer Cell - jrc_ctl-id8-2,Mouse Cytotoxic T Lymphocyte Attacking Ovarian Cancer Cell FIB-SEM,https://doi.org/10.6084/m9.figshare.14447541,Public,0,1,537

Cytotoxic T Lymphocyte Attacking ID8 Ovarian Cancer Cell - jrc_ctl-id8-3,Mouse Cytotoxic T Lymphocyte Attacking Ovarian Cancer Cell FIB-SEM,https://doi.org/10.6084/m9.figshare.14447562,Public,0,1,266

Cytotoxic T Lymphocyte Attacking ID8 Ovarian Cancer Cell - jrc_ctl-id8-4,Mouse Cytotoxic T Lymphocyte Attacking Ovarian Cancer Cell FIB-SEM,https://doi.org/10.6084/m9.figshare.14447565,Public,0,1,299

Cytotoxic T Lymphocyte Attacking ID8 Ovarian Cancer Cell - jrc_ctl-id8-5,Mouse Cytotoxic T Lymphocyte Attacking Ovarian Cancer Cell FIB-SEM,https://doi.org/10.6084/m9.figshare.14447568,Public,0,1,209

Killer T-Cell Attacking Ovarian Cancer Cell,Mouse Cytotoxic T Lymphocyte Attacking Ovarian Carcinoma FIB-SEM,https://doi.org/10.25378/janelia.13114454,Public,0,1,400

Mouse deep nuclei (jrc_mus-cerebellum-4),Mouse Deep Cerebellar Nuclei FIB-SEM,https://doi.org/10.25378/janelia.28754318,Public,0,1,165

Mouse deep nuclei (jrc_mus-cerebellum-5),Mouse Deep Cerebellar Nuclei FIB-SEM,https://doi.org/10.25378/janelia.28754696,Public,0,1,261

3D FIB/SEM Imaging of the Molecular Layer of the Mouse Dentate Gyrus,Mouse Dentate Gyrus Astrocyte Leaflet FIB-SEM,https://doi.org/10.6019/EMPIAR-12557,Public,0,5,395

Meissner Nerve-Injury Digit Skin Volume,Mouse Digit Skin Meissner Corpuscle Nerve Injury SBF-SEM,https://webknossos.org/datasets/Meissner_SNI_1_VG-2021-10-15-sni1-align2-621e2194010000a1005dcdc9/view,Public,0,1,400

Meissner Sham Digit Skin Volume,Mouse Digit Skin Meissner Corpuscle Nerve Injury SBF-SEM,https://webknossos.org/datasets/Meissner_Sham_1_VG-2021-10-15-sham1-align2-621e215801000011015dcdc8/view,Public,0,1,261

Mouse dorsal striatum (jrc_mus-dorsal-striatum),Mouse Dorsal Striatum FIB-SEM (jrc_mus-dorsal-striatum),https://doi.org/10.25378/janelia.24222688,Public,0,1,14

Mouse dorsal striatum (jrc_mus-dorsal-striatum-2),Mouse Dorsal Striatum FIB-SEM (jrc_mus-dorsal-striatum-2),https://doi.org/10.25378/janelia.28754705,Public,0,1,400

Mouse Duodenum FIB-SEM Volume,Mouse Duodenum FIB-SEM,https://openorganelle.janelia.org/datasets/jrc_mus-duodenum-1a,Public,0,1,0

FIB-SEM of 2-cell-stage like cells (2CLC) in mouse embryonic stem cells (mESC),Mouse ESC-Derived 2-Cell-Like Cell FIB-SEM,https://doi.org/10.6019/EMPIAR-13260,Public,0,2,155

Mouse Epididymis FIB-SEM Volume - jrc_mus-epididymis-1,Mouse Epididymis FIB-SEM (jrc_mus-epididymis-1),https://doi.org/10.25378/janelia.22190377,Public,0,1,141

Mouse Epididymis FIB-SEM Volume - jrc_mus-epididymis-2,Mouse Epididymis FIB-SEM (jrc_mus-epididymis-2),https://doi.org/10.25378/janelia.23407907,Public,0,1,142

WDR35 Periciliary Vesicle Tomograms (Figure 7 source data),Mouse Fibroblast Wdr35 Periciliary Vesicle ET,https://doi.org/10.5061/dryad.m37pvmd33,Public,0,5,51

GT1-7 FIB-SEM Treatment Series,Mouse GT1-7 Neuron Spermidine Autophagy FIB-SEM,https://doi.org/10.6019/EMPIAR-10946,Public,0,6,455

Electron tomography of mitochondria from adult and aged mice hearts,Mouse Heart Mitochondria ET,https://doi.org/10.6019/EMPIAR-13004,Public,0,1,13

Mouse Hemostatic Plug SBF-SEM Volumes,Mouse Hemostatic Plug SBF-SEM,https://doi.org/10.6019/EMPIAR-13192,Public,0,6,1971

Three-dimensional nanostructure of an intact microglia cell,Mouse Hippocampal Microglia SBF-SEM,https://doi.org/10.6019/EMPIAR-10201,Public,0,2,232

Synapses in transmission electron micrographs,Mouse Hippocampal Synapse TEM,https://doi.org/10.5281/zenodo.14236382,Public,13,0,167

Mouse Hippocampus CA1 eFIB-SEM Volume - jrc_mus-hippocampus-2,Mouse Hippocampus CA1 FIB-SEM,https://doi.org/10.25378/janelia.28894697,Public,0,1,400

Mouse Hippocampus CA1 eFIB-SEM Volume - jrc_mus-hippocampus-3,Mouse Hippocampus CA1 FIB-SEM,https://doi.org/10.25378/janelia.28895000,Public,0,1,400

FIB-SEM datasets of hippocampal neurons from WT and FAM92A1 knockout mice,Mouse Hippocampus FAM92A1 Knockout FIB-SEM,https://doi.org/10.6019/EMPIAR-12041,Public,0,2,93

Mouse Kidney FIB-SEM Volume,Mouse Kidney FIB-SEM (jrc_mus-kidney),https://doi.org/10.25378/janelia.16913035,Public,0,1,400

Mouse Kidney FIB-SEM Volume,Mouse Kidney FIB-SEM (jrc_mus-kidney-2),https://doi.org/10.25378/janelia.23411009,Public,0,1,400

Mouse Kidney Glomerulus FIB-SEM Volume,Mouse Kidney Glomerulus FIB-SEM,https://doi.org/10.25378/janelia.24164004,Public,0,1,289

Mouse Lateral Geniculate Nucleus SBEM Stacks,Mouse Lateral Geniculate Nucleus SBF-SEM,https://doi.org/10.60533/BOSS-2023-3TJJ,Public,0,2,800

Mouse Liver Acinus FIB-SEM Volume - jrc_mus-liver-zon-2,Mouse Liver Acinus FIB-SEM,https://doi.org/10.25378/janelia.24135486,Public,0,1,400

Mouse Liver Acinus Zone 1 FIB-SEM Volume - jrc_mus-liver-zon-1,Mouse Liver Acinus FIB-SEM (Zone 1),https://doi.org/10.25378/janelia.24128700,Public,0,1,383

Parlakgul 2022 Mouse Liver FIB-SEM,Mouse Liver FIB-SEM (Parlakgul 2022),https://doi.org/10.6019/EMPIAR-10791,Public,0,4,1526

Mouse Liver FIB-SEM Volume,Mouse Liver FIB-SEM (jrc_mus-liver),https://doi.org/10.25378/janelia.16913047,Public,0,1,400

Mouse Liver FIB-SEM Volume - jrc_mus-liver-2,Mouse Liver FIB-SEM (jrc_mus-liver-2),https://doi.org/10.25378/janelia.23411426,Public,0,1,400

Parlakgul 2024 Mouse Liver FIB-SEM Volumes,Mouse Liver Hepatic ER and Mitochondria FIB-SEM,https://doi.org/10.6019/EMPIAR-12017,Public,0,6,2400

Data from: Hepatic steatosis induced by nicotine plus Coca-Cola™ is prevented by nicotinamide riboside (NR),Mouse Liver Nicotine & Coca-Cola Steatosis TEM,https://doi.org/10.5061/dryad.g1jwstqx7,Public,15,0,0

Ventilation-induced changes in pulmonary microarchitecture and gene-expression profiles in SP-B deficient mice,Mouse Lung Alveolar Tight Junction FIB-SEM,https://doi.org/10.5281/zenodo.16782623,Public,0,2,139

Mouse Lung FIB-SEM Volume,Mouse Lung FIB-SEM,https://openorganelle.janelia.org/datasets/jrc_mus-lung-2a,Public,0,1,0

Mouse Guard Hair Follicle FIB-SEM,Mouse Mechanosensory End Organs FIB-SEM,https://doi.org/10.25378/janelia.23969061,Public,0,1,378

Mouse Meissner Corpuscle FIB-SEM - Double-innervated,Mouse Mechanosensory End Organs FIB-SEM,https://doi.org/10.25378/janelia.23969109,Public,0,1,121

Mouse Meissner Corpuscle FIB-SEM - Single-innervated,Mouse Mechanosensory End Organs FIB-SEM,https://doi.org/10.25378/janelia.23969076,Public,0,1,400

Mouse Pacinian Corpuscle FIB-SEM,Mouse Mechanosensory End Organs FIB-SEM,https://doi.org/10.25378/janelia.23969112,Public,0,1,400

K0068_05 Mouse mPFC SBEM Volume,Mouse Medial Prefrontal Cortex SBF-SEM,https://webknossos.org/datasets/K0068_05-6037e03401000099003877e4/view,Public,0,1,300

Efficient cell-wide mapping of mitochondria in electron microscopic volumes using webKnossos,Mouse Multi-Organ mito-SegEM SBF-SEM,https://doi.org/10.6019/EMPIAR-12535,Public,0,3,1200

Electron tomography - Myotubes:Fam134bKO and WT,Mouse Myotube FAM134B ER Electron Tomography,https://doi.org/10.6019/EMPIAR-12473,Public,0,2,6

Kasthuri Mouse Neocortex Volume,Mouse Neocortex SEM,https://webknossos.org/datasets/kasthuri2011-5c42004001000096156f49d8/view,Public,0,1,343

Performing Correlative Light and Electron Microscopy to reveal the structural organization and location of alpha-synuclein aggregation hotspots inside the neuron.,Mouse Neuron Alpha-Synuclein Aggregation,https://doi.org/10.6019/EMPIAR-11066,Public,0,7,609

"Dopamine Axon Connectome Volumes (NAc/VTA, saline and cocaine)",Mouse Nucleus Accumbens Dopamine Axon Cocaine SEM,https://doi.org/10.60533/BOSS-2021-YA04,Public,0,13,5200

Mouse nucleus accumbens,Mouse Nucleus Accumbens FIB-SEM (jrc_mus-nacc-1),https://doi.org/10.25378/janelia.27075514,Public,0,1,6

Mouse Nucleus Accumbens FIB-SEM Volume - jrc_mus-nacc-2,Mouse Nucleus Accumbens FIB-SEM (jrc_mus-nacc-2),https://doi.org/10.25378/janelia.24222898,Public,0,1,4

Mouse Nucleus Accumbens FIB-SEM Volume - jrc_mus-nacc-3,Mouse Nucleus Accumbens FIB-SEM (jrc_mus-nacc-3),https://doi.org/10.25378/janelia.24222913,Public,0,1,63

Mouse nucleus accumbens,Mouse Nucleus Accumbens FIB-SEM (jrc_mus-nacc-4),https://doi.org/10.25378/janelia.24222988,Public,0,1,72

FIB-SEM of an Mbp-deficient shiverer mouse optic nerve,Mouse Optic Nerve Mbp Knockout FIB-SEM,https://doi.org/10.6019/EMPIAR-10907,Public,0,1,46

FIB-SEM of mouse optic nerve of an inducible conditional Mbp knock-out 16 weeks after induction,Mouse Optic Nerve Mbp Knockout FIB-SEM,https://doi.org/10.6019/EMPIAR-10906,Public,0,1,70

FIB-SEM of mouse optic nerve of an inducible conditional Mbp knock-out 26 weeks after induction,Mouse Optic Nerve Mbp Knockout FIB-SEM,https://doi.org/10.6019/EMPIAR-10908,Public,0,1,70

Mouse Optic Nerve FIB-SEM - Mag knockout (EMPIAR-11219),Mouse Optic Nerve Plp1/Mag Knockout FIB-SEM,https://doi.org/10.6019/EMPIAR-11219,Public,0,1,67

Mouse Optic Nerve FIB-SEM - Mag knockout (EMPIAR-11220),Mouse Optic Nerve Plp1/Mag Knockout FIB-SEM,https://doi.org/10.6019/EMPIAR-11220,Public,0,1,77

Mouse Optic Nerve FIB-SEM - Mag knockout (EMPIAR-11237),Mouse Optic Nerve Plp1/Mag Knockout FIB-SEM,https://doi.org/10.6019/EMPIAR-11237,Public,0,1,98

Mouse Optic Nerve FIB-SEM - Plp1-null (EMPIAR-11214),Mouse Optic Nerve Plp1/Mag Knockout FIB-SEM,https://doi.org/10.6019/EMPIAR-11214,Public,0,1,114

Mouse Optic Nerve FIB-SEM - Plp1-null (EMPIAR-11215),Mouse Optic Nerve Plp1/Mag Knockout FIB-SEM,https://doi.org/10.6019/EMPIAR-11215,Public,0,1,96

Mouse Optic Nerve FIB-SEM - Plp1-null (EMPIAR-11216),Mouse Optic Nerve Plp1/Mag Knockout FIB-SEM,https://doi.org/10.6019/EMPIAR-11216,Public,0,1,87

Mouse Optic Nerve FIB-SEM - Wild-type control (EMPIAR-11238),Mouse Optic Nerve Plp1/Mag Knockout FIB-SEM,https://doi.org/10.6019/EMPIAR-11238,Public,0,1,115

Mouse Optic Nerve FIB-SEM - Wild-type control (EMPIAR-11240),Mouse Optic Nerve Plp1/Mag Knockout FIB-SEM,https://doi.org/10.6019/EMPIAR-11240,Public,0,1,73

Mouse Optic Nerve OPC SBF-SEM Series,Mouse Optic Nerve SBF-SEM,https://doi.org/10.17632/smkd8cd8mk,Public,0,9,3160

Newborn Mouse Optic Nerve SBF-SEM ROI 00-1 to 00-3,Mouse Optic Nerve SBF-SEM,https://doi.org/10.17632/6pf5fhzgwg,Public,0,3,960

Newborn Mouse Optic Nerve SBF-SEM ROI 00-3,Mouse Optic Nerve SBF-SEM,https://doi.org/10.17632/wbbk78nc7f,Public,0,1,400

Newborn Mouse Optic Nerve SBF-SEM ROI 01-1,Mouse Optic Nerve SBF-SEM,https://doi.org/10.17632/5955942vc3,Public,0,1,400

Isolated murine pancreatic islets,Mouse Pancreatic Islet FIB-SEM,https://doi.org/10.25378/janelia.13114499,Public,0,1,400

Isolated murine pancreatic islets - jrc_mus-pancreas-2,Mouse Pancreatic Islet FIB-SEM Low Glucose,https://doi.org/10.25378/janelia.19196540,Public,0,1,411

Isolated murine pancreatic islets - jrc_mus-pancreas-3,Mouse Pancreatic Islet FIB-SEM Low Glucose,https://doi.org/10.25378/janelia.19196585,Public,0,1,200

Identifying long-range synaptic inputs using genetically encoded labels and volume electron microscopy,Mouse Periaqueductal Gray dAPEX2 Synaptic-Input FIB-SEM,https://doi.org/10.6019/EMPIAR-10883,Public,0,6,461

Bock 2011 Mouse Visual Cortex ssTEM,Mouse Primary Visual Cortex ssTEM,https://doi.org/10.60533/BOSS-2011-K12H,Public,0,1,785

"Mouse retina outer plexiform layer FIB-SEM volumes (EM1, EM2)",Mouse Retina Outer Plexiform Layer FIB-SEM,https://doi.org/10.60533/BOSS-2021-4MZE,Public,0,2,211

Mouse retina SBEM volume (100527_k0563),Mouse Retina SBF-SEM (Briggman 2011),https://webknossos.org/datasets/100527_k0563-5a7c737448d7a73cea3c83aa/view,Public,0,1,107

Mouse retina 110629_k0725 SBEM volume,Mouse Retina SBF-SEM (Ding 2016),https://webknossos.org/datasets/110629_k0725-5c98db84010000b02339b49b/view,Public,0,1,277

Mouse Retina e2006 SBEM Volume,Mouse Retina SBF-SEM (Helmstaedter 2013),https://webknossos.org/datasets/e2006-5a7c737448d7a73cea3c83ae/view,Public,0,1,186

Automated quantification of photoreceptor outer segments in developing and degenerating retinas on microscopy images across scales,Mouse Retinal Photoreceptor Outer Segment TEM,https://doi.org/10.6019/S-BIAD1078,Public,87,0,1065

Mouse S1 Cortex SBEM Demo Cutout,Mouse S1 Cortex SBF-SEM Demo,https://webknossos.org/datasets/2012-09-28_ex145_07x2_demo-5a7c737448d7a73cea3c83a8/view,Public,0,1,75

Mouse salivary gland FIB-SEM volume (jrc_mus-salivary-1),Mouse Salivary Gland FIB-SEM,https://open.quiltdata.com/b/janelia-cosem-datasets/tree/jrc_mus-salivary-1/,Public,0,1,400

Mouse skeletal muscle FIB-SEM volume (jrc_mus-skel-muscle-1),Mouse Skeletal Muscle FIB-SEM,https://openorganelle.janelia.org/datasets/jrc_mus-skel-muscle-1,Public,0,1,400

Focused Ion Beam-Scanning Electron Microscopy of mitochondrial reticulum in murine skeletal muscle,Mouse Skeletal Muscle Mitochondrial Reticulum FIB-SEM,https://doi.org/10.6019/EMPIAR-10070,Public,0,1,53

Mouse skin FIB-SEM volume (jrc_mus-skin-2a),Mouse Skin FIB-SEM,https://openorganelle.janelia.org/datasets/jrc_mus-skin-2a,Public,0,1,308

L4 Mouse Cortex SBEM Volume - L4MouseCortex,Mouse Somatosensory Cortex Layer 4 SBF-SEM,https://webknossos.org/datasets/L4MouseCortex-63f72eb20100000f029408c0/view,Public,0,1,96

L4 Mouse Cortex SBEM Volume - sample cutout,Mouse Somatosensory Cortex Layer 4 SBF-SEM,https://webknossos.org/datasets/l4_sample-5fa015dc0100007c004f80cc/view,Public,0,1,0

L4 Mouse Somatosensory Cortex SBEM Volume - ROI2017,Mouse Somatosensory Cortex Layer 4 SBF-SEM,https://webknossos.org/datasets/2012-09-28_ex145_07x2_ROI2017-5da84e9401000018006d210b/view,Public,0,1,400

L4 Mouse Somatosensory Cortex SBEM Volume - ROI2017 connectome,Mouse Somatosensory Cortex Layer 4 SBF-SEM,https://webknossos.org/datasets/2012-09-28_ex145_07x2_ROI2017_connectome-5de003880100001b0086553b/view,Public,0,1,400

Mouse spermatotubule ATUM-SEM serial sections (EMPIAR-12157),Mouse Spermatotubule SEM,https://doi.org/10.6019/EMPIAR-12157,Public,0,1,281

Mouse Spinal Cord FIB-SEM Volume - Atl1KI/Reep1-KO mutant,Mouse Spinal Cord Hereditary Spastic Paraplegia FIB-SEM,https://doi.org/10.25378/janelia.20134979,Public,0,1,400

Mouse Spinal Cord FIB-SEM Volume - Wild-type,Mouse Spinal Cord Hereditary Spastic Paraplegia FIB-SEM,https://doi.org/10.25378/janelia.20134574,Public,0,1,263

Subcellular connectomic analyses of energy networks in striated muscle,Mouse Striated Muscle Mitochondrial Network FIB-SEM,https://zenodo.org/records/3936061,Public,0,3,118

HuaLab Mouse Testis Tissue,Mouse Testis SBF-SEM,https://doi.org/10.6019/EMPIAR-12535,Public,0,1,33

Mouse thymus FIB-SEM volume (jrc_mus-thymus-2a),Mouse Thymus FIB-SEM,https://openorganelle.janelia.org/datasets/jrc_mus-thymus-2a,Public,0,1,0

ATUM-Tomo: A multi-scale approach to cellular ultrastructure by combined volume scanning electron microscopy and electron tomography,Mouse Traumatic Brain Injury Cortex Correlative ATUM-Tomo,https://doi.org/10.6019/S-BIAD1274,Public,0,6,1259

"Venous puncture wound thrombi, 1, 5, 20 min post-puncture, 100 nm XY raw images, 20 nm XY pixels every 20 micons, 3 nm wide area TEM montages at selected depth",Mouse Venous Puncture Thrombus SBF-SEM,https://doi.org/10.6019/EMPIAR-10785,Public,0,18,3820

Mouse V1 ssTEM Volume,Mouse Visual Cortex Connectomics TEM,https://webknossos.org/datasets/lee16-5c61b71c0100003f3b177de3/view,Public,0,1,400

Mouse dLGN ATUM-SEM Volume - WEBKNOSSOS,Mouse Visual Thalamus (dLGN) Serial-Section SEM,https://webknossos.org/datasets/morgan2020-6373490b01000026011a53f7/view,Public,0,1,400

Mouse dLGN Serial-Section EM Volume - BossDB,Mouse Visual Thalamus (dLGN) Serial-Section SEM,https://doi.org/10.60533/BOSS-2020-OMCN,Public,0,1,400

NIH-3T3 Control & OPA1-KD FIB-SEM Volumes,NIH-3T3 Mitochondrial Cristae Control & OPA1 Knockdown FIB-SEM,https://doi.org/10.6019/EMPIAR-11449,Public,0,3,226

Nematode pharyngeal connectome ssTEM (BossDB),Nematode Pharyngeal Connectome TEM,https://doi.org/10.60533/BOSS-2013-XKV2,Public,0,2,593

P. pacificus pharynx ssTEM volume (webKnossos),Nematode Pharyngeal Connectome TEM,https://webknossos.org/datasets/bumbarger13-5ca4dd07010000a02931d708/view,Public,0,1,611

Focused Ion Beam - Scanning Electron Microscopy volume of the aboral pole of a Nematostella Vectensis polyp,Nematostella vectensis Aboral Pole FIB-SEM,https://doi.org/10.6019/EMPIAR-13099,Public,0,1,72

Nocodazole-Treated HeLa Cell FIB-SEM Volume (jrc_hela-nz-1),Nocodazole-Treated HeLa Cell FIB-SEM,https://doi.org/10.25378/janelia.24944784,Public,0,1,400

Nocodazole-Treated HeLa Cell FIB-SEM Volume (jrc_hela-nz-2),Nocodazole-Treated HeLa Cell FIB-SEM (jrc_hela-nz-2),https://openorganelle.janelia.org/datasets/jrc_hela-nz-2,Public,0,1,400

3D reconstruction of structures of hatched larva and young juvenile of the larvacean Oikopleura dioica using SBF-SEM. - Juvenile,Oikopleura dioica SBF-SEM,https://doi.org/10.5061/dryad.d51c5b012,Public,0,1,400

Serial section images of Oikopleura dioica larva using SBF-SEM - Larva,Oikopleura dioica SBF-SEM,https://doi.org/10.5061/dryad.dbrv15dzh,Public,0,1,400

P7 Mouse Heart FIB-SEM Volume,P7 Mouse Heart FIB-SEM,https://doi.org/10.25378/janelia.24020919,Public,0,1,399

P7 Mouse Hippocampus FIB-SEM Volume,P7 Mouse Hippocampus FIB-SEM,https://doi.org/10.25378/janelia.24085176,Public,0,1,400

P7 Mouse Kidney,P7 Mouse Kidney FIB-SEM,https://doi.org/10.25378/janelia.24020799,Public,0,1,400

P7 Mouse Liver,P7 Mouse Liver FIB-SEM,https://doi.org/10.25378/janelia.24051189,Public,0,1,400

P7 Mouse Pancreas,P7 Mouse Pancreas FIB-SEM,https://doi.org/10.25378/janelia.23411843,Public,0,1,400

P7 Mouse Skin,P7 Mouse Skin FIB-SEM,https://doi.org/10.25378/janelia.24085269,Public,0,1,400

P7 Mouse Thymus,P7 Mouse Thymus FIB-SEM,https://doi.org/10.25378/janelia.24085287,Public,0,1,400

Paramecium Macronucleus TEM,Paramecium Macronucleus TEM,https://doi.org/10.6075/j0nz86k4,Public,1,0,4

Cytoklepty in the plankton: a host strategy to optimize the bioenergetic machinery of endosymbiotic algae,Phaeocystis-Acantharia Photosymbiosis FIB-SEM,https://doi.org/10.6019/EMPIAR-10672,Public,0,8,48

Data from: Phylogenetic distribution and expression pattern analyses identified a divergent basal body assembly protein involved in land plant spermatogenesis,Physcomitrium patens Spermatid TEM,https://doi.org/10.5281/zenodo.6546077,Public,0,3,6

FIB-SEM of Gemmata obscuriglobus - a species of the Planctomycetes phylum,Planctomycetes Bacteria FIB-SEM,https://doi.org/10.6019/EMPIAR-10553,Public,0,1,0

Tuwongella immobilis FIB-SEM Volume,Planctomycetes Bacteria FIB-SEM,https://doi.org/10.6019/EMPIAR-10554,Public,0,1,100

Plantorganelle Hunter EM images,Plant Leaf Organelle TEM,https://doi.org/10.57760/sciencedb.01335,Public,929,0,2459

Potato virus Y coat protein involvement in viral movement,Plant Leaf Potato Virus Y Movement TEM,https://doi.org/10.5281/zenodo.17643798,Public,100,0,385

Plasmodium berghei Male Gamete SBF-SEM,Plasmodium berghei Male Gamete Formation SBF-SEM,https://doi.org/10.6019/EMPIAR-11710,Public,0,2,800

Plasmodium berghei ookinete,Plasmodium berghei Ookinete FIB-SEM,https://doi.org/10.6019/EMPIAR-12956,Public,0,1,24

Cellular Hallmarks from Volume Electron Microscopy reveals Developmental Progression of Plasmodium Ookinetes,Plasmodium berghei Ookinete SBF-SEM,https://doi.org/10.6019/EMPIAR-12951,Public,0,23,146

Comparative 3D ultrastructure of Plasmodium falciparum gametocytes,Plasmodium falciparum Gametocyte 3D Ultrastructure FIB-SEM,https://doi.org/10.6019/EMPIAR-12160,Public,0,24,2868

SBF-SEM of early schizont-stage malaria parasite infected red blood cell,Plasmodium falciparum-Infected Red Blood Cell SBF-SEM,https://doi.org/10.6019/EMPIAR-10054,Public,0,1,14

SBF-SEM of late schizont-stage malaria parasite infected red blood cell,Plasmodium falciparum-Infected Red Blood Cell SBF-SEM,https://doi.org/10.6019/EMPIAR-10055,Public,0,1,15

SBF-SEM of ring-stage malaria parasite infected red blood cell,Plasmodium falciparum-Infected Red Blood Cell SBF-SEM,https://doi.org/10.6019/EMPIAR-10052,Public,0,1,20

SBF-SEM of trophozoite-stage malaria parasite infected red blood cell,Plasmodium falciparum-Infected Red Blood Cell SBF-SEM,https://doi.org/10.6019/EMPIAR-10053,Public,0,1,19

SBF-SEM datasets of chaetoblasts constructing bristles in Platynereis dumerilii,Platynereis dumerilii Chaetoblast SBF-SEM,https://doi.org/10.6019/EMPIAR-11851,Public,0,3,734

Data from: A serial multiplex immunogold labeling method for identifying peptidergic neurons in connectomes,Platynereis dumerilii Nerve Cord siGOLD Immunogold TEM,https://doi.org/10.5061/dryad.c7366,Public,12,0,258

FIB-SEM of parapodia from Platynereis dumerilii,Platynereis dumerilii Parapodia FIB-SEM,https://doi.org/10.6019/EMPIAR-10310,Public,0,1,0

Whole-body integration of gene expression and single-cell morphology,Platynereis dumerilii Whole-Body Larva SBF-SEM,https://doi.org/10.6019/EMPIAR-10365,Public,0,1,0

Fib-SEM stacks for Prey (Phaeocystis antarctica) and Host (Ross Sea Dinoflagellate; RSD),Polar Plankton Organelle Hijacking FIB-SEM,https://doi.org/10.6019/EMPIAR-12627,Public,0,18,1189

RAEM random-access electron microscopy for revisitable 3D imaging,RAEM Revisitable 3D Imaging SEM,https://doi.org/10.60533/boss-2026-mw96,Public,2,2,354

Rabbit Retina e1088 SBEM Volume,Rabbit Retina SBF-SEM,https://webknossos.org/datasets/e1088_large-5c010a3c010000f6145257c8/view,Public,0,1,211

Denk and Horstmann 2004 rat cortex SBF-SEM,Rat Cerebral Cortex SBF-SEM,https://webknossos.org/datasets/denk2004-5bfd0b1c0100003f3574cc8e,Public,0,1,24

Data for: Axonal Structure-Function relationships across experimental modalities,Rat Corpus Callosum Axon TEM,https://doi.org/10.5281/zenodo.17476529,Public,1,0,58

Harris 2015 Hippocampal Neuropil 3DEM - Apical Dendrite,Rat Hippocampal CA1 Neuropil TEM,https://webknossos.org/datasets/kharris15_apical-5c7e907c010000160cc8d8d0/view,Public,0,1,185

Harris 2015 Hippocampal Neuropil 3DEM - Oblique Dendrite,Rat Hippocampal CA1 Neuropil TEM,https://webknossos.org/datasets/kharris15_oblique-5c7e907c010000790cc8d8cf/view,Public,0,1,85

Harris 2015 Hippocampal Neuropil 3DEM - Spine,Rat Hippocampal CA1 Neuropil TEM,https://webknossos.org/datasets/kharris15_spine-5c7e907c010000c60bc8d8ce/view,Public,0,1,21

Harris 2015 Rat Hippocampal CA1 Neuropil,Rat Hippocampal CA1 Neuropil TEM,https://doi.org/10.60533/BOSS-2015-GYEN,Public,0,3,185

Dl-3-n-butylphthalide alleviates cognitive impairment induced by chronic cerebral hypoperfusion via inhibiting the mitochondrial permeability transition pore opening and excessive mitophagy,Rat Hippocampus Chronic Cerebral Hypoperfusion TEM,https://doi.org/10.5281/zenodo.14253010,Public,9,0,36

GLAM Rat Hippocampus Demo Bundle,Rat Hippocampus FIB-SEM,https://doi.org/10.5061/dryad.808k4r0,Public,0,1,0

Rat Medial Entorhinal Cortex P25 Motortile 1,Rat Medial Entorhinal Cortex SBF-SEM,https://webknossos.org/datasets/HS_st218_MT1-5a7c738a48d7a73cea3c83c2/view,Public,0,1,318

FAST-EM array tomography data of rat pancreas prepared with rOTO protocol and stained with neodymium acetate - EMPIAR-12174 (4x4 mosaics),Rat Pancreas FAST-EM Array Tomography,https://doi.org/10.6019/EMPIAR-12174,Public,0,43,2601

FAST-EM array tomography data of rat pancreas prepared with rOTO protocol and stained with neodymium acetate - EMPIAR-12193 (10x10 mosaics),Rat Pancreas FAST-EM Array Tomography,https://doi.org/10.6019/EMPIAR-12193,Public,0,72,16889

3D serial block-face scanning electron microscopy (SBF-SEM) imaging of a rat pelvic nerve - Volume 1 (Version 2),Rat Pelvic Nerve SBF-SEM,https://doi.org/10.26275/8bbl-fzip,Public,0,1,400

SARS-CoV-2-infected Vero Cell FIB-SEM Volume,SARS-CoV-2-Infected Vero Cell FIB-SEM,https://doi.org/10.25378/janelia.16638316,Public,0,1,318

Serial Block Face Scanning Electron Micrscopy dataset of fetal day 64 guinea pig psoas muscle in transverse,SBF-SEM Reconstruction Guide Example Volumes,https://doi.org/10.6019/EMPIAR-10092,Public,0,1,93

Serial Block Face Scanning Electron Micrscopy dataset of the optic lobe from an adult locust,SBF-SEM Reconstruction Guide Example Volumes,https://doi.org/10.6019/EMPIAR-10152,Public,0,1,240

SM WT1 8 nm Lysosome Combined FIB-SEM Volume,SM WT1 Lysosome FIB-SEM,https://webknossos.org/datasets/SM_WT1_8nm_lysosome_combined-661d83c20100008c0298c110/view,Public,0,1,30

Mouse Brown Adipose Tissue WT & Smc5 K371/K371 SBF-SEM,SMC5 Mutant Mouse Brown Adipose Tissue SBF-SEM,https://doi.org/10.6019/EMPIAR-13505,Public,0,2,800

Immortalized breast cancer cell (SUM159) - jrc_sum159-1,SUM159 Breast Cancer Cell FIB-SEM (jrc_sum159-1),https://doi.org/10.25378/janelia.13114352,Public,0,1,187

Immortalized breast cancer cell (SUM159) - jrc_sum159-4,SUM159 Breast Cancer Cell FIB-SEM (jrc_sum159-4),https://doi.org/10.25378/janelia.20134103,Public,0,1,400

Adaptive traits of cysts of the snow alga Sanguina nivaloides unveiled by 3D subcellular imaging,Sanguina nivaloides Snow Alga Cyst FIB-SEM,https://doi.org/10.6019/EMPIAR-11694,Public,0,2,7

FIB/SEM sample dataset MCB-CLEM IV Weiner,Shigella flexneri HeLa Cell Invasion FIB-SEM,https://doi.org/10.6019/EMPIAR-10479,Public,0,1,12

Macrophage cell,THP-1 Macrophage FIB-SEM,https://doi.org/10.25378/janelia.13114343,Public,0,1,447

TEM Image Dataset for Mitochondrial Morphology Analysis in Chemotherapy Response and Cancer Metastasis Studies,TNBC Mitochondrial Chemotherapy-Response TEM,https://doi.org/10.5281/zenodo.15608455,Public,1742,0,13196

TEM Mitochondria Segmentation Dataset for Triple Negative Breast Cancer Chemotherapy Analysis,TNBC Mitochondrial Chemotherapy-Response TEM,https://doi.org/10.5281/zenodo.15602048,Public,209,0,1442

Plant SBF-SEM - Tobacco Leaf Chloroplast,Tobacco Leaf Chloroplast SBF-SEM,https://doi.org/10.6019/EMPIAR-11831,Public,0,1,26

Processed FIB SEM images of a parasitophorous vacuole containing Toxoplasma gondii ΔCAP parasites,Toxoplasma gondii CAP Parasitophorous Vacuole FIB-SEM,https://doi.org/10.6019/EMPIAR-10324,Public,0,1,3

"Processed FIB SEM images of a parasitophorous vacuole containing Toxoplasma gondii ΔCAP parasites, complemented with CAP",Toxoplasma gondii CAP Parasitophorous Vacuole FIB-SEM,https://doi.org/10.6019/EMPIAR-10327,Public,0,1,4

SBF-SEM of the Trichuris muris Stichosome,Trichuris muris Stichosome SBF-SEM,https://doi.org/10.5281/zenodo.3601280,Public,0,2,800

FIB-SEM dataset of a human bone osteosarcoma epithelial cell (U2-OS),U2-OS Cell FIB-SEM,https://doi.org/10.6019/EMPIAR-11746,Public,0,1,48

"FIB-SEM of U2OS cell at leading edge of a wound assay, LPA stimulated, polarized",U2-OS Cell Wound Assay Leading Edge FIB-SEM,https://doi.org/10.6019/EMPIAR-11002,Public,0,1,1

"FIB-SEM of U2OS cell at leading edge of a wound assay, non-LPA stimulated, non-polarized",U2-OS Cell Wound-Assay Leading Edge FIB-SEM,https://doi.org/10.6019/EMPIAR-11003,Public,0,1,30

Cryo-FIB-SEM volume (ROI6),U2OS Cell Mitochondrial Pearling Cryo-FIB-SEM,https://doi.org/10.5281/zenodo.17769238,Public,0,1,400

FIBSEM Run2 Feb 2026 pt1,Unprovenanced FIB-SEM Volume (Run2 Feb 2026 pt1),https://webknossos.org/datasets/FIBSEM_Run2_Feb2026_pt1-69814e310100009701047c11,Public,0,1,19

Vero Cell Culture Image Dataset,Vero E6 Cell Culture FBS Variation TEM,https://doi.org/10.5281/zenodo.17928456,Public,117,0,1340

Electron tomography of endosymbiotic bacteria inside a bacteriocyte of the cereal weevil Sitophilus oryzae - EMPIAR-12198,Weevil Bacteriocyte Endosymbiont Tubular Networks ET,https://doi.org/10.6019/EMPIAR-12198,Public,0,1,10

Electron tomography of endosymbiotic bacteria inside a bacteriocyte of the cereal weevil Sitophilus oryzae - EMPIAR-12602,Weevil Bacteriocyte Endosymbiont Tubular Networks ET,https://doi.org/10.6019/EMPIAR-12602,Public,0,1,15

Zebra Finch Brain MagC Correlative Volumes,Zebra Finch Brain MagC Correlative SEM,https://doi.org/10.60533/BOSS-2019-B9NV,Public,0,2,800

Zebra Finch HVC j0256,Zebra Finch HVC SBF-SEM,https://webknossos.org/datasets/j0256-5c051f59010000b538527270/view,Public,0,1,400

"Array Tomography of zebrafish axillary lymphoid organ - an external, experimentally accessible immune organ in the zebrafish",Zebrafish Axillary Lymphoid Organ SEM,https://www.ebi.ac.uk/empiar/EMPIAR-12377/,Public,0,7,597

SBF SEM images of a Zebrafish hindbrain containing several Toxoplasma gondii tachizoites at different stages of replication,Zebrafish Hindbrain Toxoplasma Infection,https://doi.org/10.6019/EMPIAR-10463,Public,0,5,1880

SBF SEM images of a Zebrafish hindbrain macrophage containing 2 Toxoplasma gondii tachizoites,Zebrafish Hindbrain Toxoplasma Infection,https://doi.org/10.6019/EMPIAR-10461,Public,0,3,490

TEM images of a Zebrafish hindbrain cells containing Toxoplasma gondii tachizoites,Zebrafish Hindbrain Toxoplasma Infection,https://doi.org/10.6019/EMPIAR-10460,Public,0,3,180

Zebrafish Hindbrain Macrophage SBF-SEM,Zebrafish Hindbrain Toxoplasma Infection,https://doi.org/10.6019/EMPIAR-10462,Public,0,2,800

Zebrafish Hindbrain ROI01 SBF-SEM,Zebrafish Hindbrain Toxoplasma Infection,https://doi.org/10.6019/EMPIAR-10464,Public,0,11,3516

Zebrafish Macrophage FIB-SEM Volume,Zebrafish Hindbrain Toxoplasma Infection,https://doi.org/10.6019/EMPIAR-10459,Public,0,1,160

7 day post fertilization larval zebrafish cardiac tissue,Zebrafish Larval Heart FIB-SEM,https://doi.org/10.25378/janelia.22630519,Public,0,1,266

Larval Zebrafish Olfactory Bulb SBEM Volume,Zebrafish Larval Olfactory Bulb SBF-SEM,https://doi.org/10.60533/BOSS-2016-U6PR,Public,0,1,359

Zebrafish lateral-line neuromast SBEM - N1,Zebrafish Lateral-Line Neuromast SBF-SEM,https://webknossos.org/datasets/Neuromast_N1-5b4238a61d00004b1d1ab5e2/view,Public,0,1,389

Zebrafish lateral-line neuromast SBEM - N2,Zebrafish Lateral-Line Neuromast SBF-SEM,https://webknossos.org/datasets/Neuromast_N2-5b4238a61d0000c42a1ab5e4/view,Public,0,2,658

Zebrafish lateral-line neuromast SBEM - T1,Zebrafish Lateral-Line Neuromast SBF-SEM,https://webknossos.org/datasets/Neuromast_T1-5b3ce7bb1d0000340240b91b/view,Public,0,1,231

Zebrafish lateral-line neuromast SBEM - T3,Zebrafish Lateral-Line Neuromast SBF-SEM,https://webknossos.org/datasets/Neuromast_T3-5b4238a61d0000c42a1ab5e3/view,Public,0,1,216

Zebrafish lateral-line neuromast SBEM - T4,Zebrafish Lateral-Line Neuromast SBF-SEM,https://webknossos.org/datasets/Neuromast_T4-5b4238a61d0000c42a1ab5e5/view,Public,0,1,585

Zebrafish lateral-line neuromast SBEM - WT1,Zebrafish Lateral-Line Neuromast SBF-SEM,https://webknossos.org/datasets/Neuromast_WT1-5b3ce7bb1d0000340240b921/view,Public,0,1,388

Zebrafish lateral-line neuromast SBEM - WT2,Zebrafish Lateral-Line Neuromast SBF-SEM,https://webknossos.org/datasets/Neuromast_WT2-5b3ce7bb1d0000340240b923/view,Public,0,1,366

Zebrafish lateral-line neuromast SBEM - WT7,Zebrafish Lateral-Line Neuromast SBF-SEM,https://webknossos.org/datasets/Neuromast_WT7-5b3ce7bb1d0000340240b91c/view,Public,0,1,183

Zebrafish lateral-line neuromast SBEM - WT8,Zebrafish Lateral-Line Neuromast SBF-SEM,https://webknossos.org/datasets/Neuromast_WT8-5b3ce7bb1d0000340240b91f/view,Public,0,1,302

Zebrafish Spinal Circuit SBF-SEM Volume,Zebrafish Spinal Escape Circuit SBF-SEM,https://webknossos.org/datasets/zebrafish_vertebra_250um-6064317a010000740060d95a/view,Public,0,1,448

BHK-21 HCV core lipid droplets,BHK-21 Cell HCV Core Protein Steatosis TEM,https://doi.org/10.6019/S-BIAD3712,Outreach,10,0,10

Liver - ADH-neg Control,Deer Mouse Alcohol-Induced Liver & Pancreas Injury TEM,https://doi.org/10.6019/S-BIAD3723,Outreach,2,0,2

Liver - ADH-neg Ethanol-fed,Deer Mouse Alcohol-Induced Liver & Pancreas Injury TEM,https://doi.org/10.6019/S-BIAD3723,Outreach,8,0,7

Liver - ADH-pos Control,Deer Mouse Alcohol-Induced Liver & Pancreas Injury TEM,https://doi.org/10.6019/S-BIAD3723,Outreach,2,0,2

Liver - ADH-pos Ethanol-fed,Deer Mouse Alcohol-Induced Liver & Pancreas Injury TEM,https://doi.org/10.6019/S-BIAD3723,Outreach,7,0,7

Pancreas - ADH-neg Control,Deer Mouse Alcohol-Induced Liver & Pancreas Injury TEM,https://doi.org/10.6019/S-BIAD3723,Outreach,3,0,12

Pancreas - ADH-neg Ethanol-fed,Deer Mouse Alcohol-Induced Liver & Pancreas Injury TEM,https://doi.org/10.6019/S-BIAD3723,Outreach,7,0,16

Pancreas - ADH-pos Control,Deer Mouse Alcohol-Induced Liver & Pancreas Injury TEM,https://doi.org/10.6019/S-BIAD3723,Outreach,2,0,5

Pancreas - ADH-pos Ethanol-fed,Deer Mouse Alcohol-Induced Liver & Pancreas Injury TEM,https://doi.org/10.6019/S-BIAD3723,Outreach,8,0,8

GRX Cell Line,GRX Murine Hepatic Stellate Cell Line TEM,https://doi.org/10.6019/S-BIAD3727,Outreach,50,0,47

GRX Cell Line - Viral Particles,GRX Murine Hepatic Stellate Cell Line TEM,https://doi.org/10.6019/S-BIAD3727,Outreach,14,0,14

"Opisthorchis-infected, high-fat/high-fructose diet",Hamster Liver Opisthorchis Infection NAFLD TEM,https://doi.org/10.6019/S-BIAD3711,Outreach,11,0,11

"Opisthorchis-infected, normal chow",Hamster Liver Opisthorchis Infection NAFLD TEM,https://doi.org/10.6019/S-BIAD3711,Outreach,11,0,11

"Uninfected control, high-fat/high-fructose diet",Hamster Liver Opisthorchis Infection NAFLD TEM,https://doi.org/10.6019/S-BIAD3711,Outreach,12,0,11

"Uninfected control, normal chow",Hamster Liver Opisthorchis Infection NAFLD TEM,https://doi.org/10.6019/S-BIAD3711,Outreach,11,0,11

Postmortem COVID-19 ultrastructure,Human COVID-19 Postmortem Multi-Organ TEM,https://doi.org/10.6019/S-BIAD3706,Outreach,4,0,4

Postmortem COVID-19 renal ultrastructure,Human Kidney COVID-19 Postmortem TEM,https://doi.org/10.6019/S-BIAD3706,Outreach,6,0,6

Postmortem COVID-19 kidney ultrastructure,Human Kidney COVID-19 Postmortem TEM (2),https://doi.org/10.6019/S-BIAD3706,Outreach,2,0,2

Renal biopsy TEM - light chain deposition disease,Human Kidney Light Chain Deposition Disease TEM,https://doi.org/10.6019/S-BIAD3717,Outreach,6,0,5

Lipedema adipose tissue capillaries - TEM,Human Lipedema Adipose Capillary TEM,https://doi.org/10.6019/S-BIAD3710,Outreach,8,0,8

Giant mitochondria in NAFLD liver - array tomography volumes (4 patients),Human Liver Giant Mitochondria NAFLD SEM,https://doi.org/10.6019/S-BIAD3713,Outreach,0,4,867

Human HCV liver steatosis,Human Liver Hepatitis C Steatosis TEM,https://doi.org/10.6019/S-BIAD3712,Outreach,102,0,94

Postmortem COVID-19 lung and liver ultrastructure,Human Lung & Liver COVID-19 Postmortem TEM,https://doi.org/10.6019/S-BIAD3706,Outreach,4,0,4

Renal Biopsy TEM - Membranous Glomerulonephritis,Human Membranous Glomerulonephritis Kidney TEM,https://doi.org/10.6019/S-BIAD3717,Outreach,6,0,6

Multi-organ postmortem COVID-19 TEM,Human Multi-Organ COVID-19 Postmortem TEM,https://doi.org/10.6019/S-BIAD3706,Outreach,6,0,6

"Brown Adipose Tissue EM — Thermogenesis & Peridroplet Mitochondria (Winn 2019, Acin-Perez 2021)",Islet and Adipose EM,https://doi.org/10.6019/S-BIAD3699,Outreach,87,0,85

Islet EM — Weight Cycling & Insulin Secretion (Winn 2022),Islet and Adipose EM,https://doi.org/10.6019/S-BIAD3700,Outreach,5,0,525

Malacosporean ultrastructure (figure panels),Malacosporean Myxozoan Fish Kidney TEM,https://doi.org/10.6019/S-BIAD3704,Outreach,20,0,148

Adipose organ transdifferentiation - TEM (2009),Mouse Adipose Organ Transdifferentiation TEM,https://doi.org/10.6019/S-BIAD3710,Outreach,1,0,1

Adipose organ transdifferentiation triangle - TEM (2025),Mouse Adipose Organ Transdifferentiation TEM,https://doi.org/10.6019/S-BIAD3710,Outreach,3,0,3

Adipose-to-mammary transdifferentiation TEM,Mouse Adipose-to-Mammary Transdifferentiation TEM,https://doi.org/10.6019/S-BIAD3710,Outreach,1,0,1

"MuTk2_112 - POLG-mutator, TWNK overexpressor",Mouse Heart mtDNA Replication TEM,https://doi.org/10.6019/S-BIAD3725,Outreach,5,0,10

"MuTk2_113 - POLG-mutator, TWNK overexpressor",Mouse Heart mtDNA Replication TEM,https://doi.org/10.6019/S-BIAD3725,Outreach,10,0,20

MuTk2_116 - Wild-type,Mouse Heart mtDNA Replication TEM,https://doi.org/10.6019/S-BIAD3725,Outreach,10,0,18

"MuTk2_132 - POLG-mutator, TWNK wild-type",Mouse Heart mtDNA Replication TEM,https://doi.org/10.6019/S-BIAD3725,Outreach,7,0,14

Mouse hepatocyte nucleolus YB-1 / RNA polymerase I immunogold TEM,Mouse Hepatocyte YB-1 Immunogold TEM,https://doi.org/10.6019/S-BIAD3701,Outreach,1,0,1

CDX1 knockout - 857-cdx1ko,Mouse Intestine Cdx Knockout TEM,https://doi.org/10.6019/S-BIAD3707,Outreach,34,0,63

CDX1/CDX2 double knockout - 855-dblko,Mouse Intestine Cdx Knockout TEM,https://doi.org/10.6019/S-BIAD3707,Outreach,43,0,80

CDX1/CDX2 double knockout - F18-DBLKO,Mouse Intestine Cdx Knockout TEM,https://doi.org/10.6019/S-BIAD3707,Outreach,30,0,58

CDX2 knockout - 207,Mouse Intestine Cdx Knockout TEM,https://doi.org/10.6019/S-BIAD3707,Outreach,21,0,42

CDX2 knockout - 213,Mouse Intestine Cdx Knockout TEM,https://doi.org/10.6019/S-BIAD3707,Outreach,15,0,30

CDX2 knockout - 537_547,Mouse Intestine Cdx Knockout TEM,https://doi.org/10.6019/S-BIAD3707,Outreach,30,0,56

Control - 537_547,Mouse Intestine Cdx Knockout TEM,https://doi.org/10.6019/S-BIAD3707,Outreach,21,0,42

Alport model - 16 weeks,Mouse Kidney Aging and Alport Disease Matrix TEM,https://doi.org/10.6019/S-BIAD3708,Outreach,37,0,72

Alport model - 8 weeks,Mouse Kidney Aging and Alport Disease Matrix TEM,https://doi.org/10.6019/S-BIAD3708,Outreach,36,0,64

Control - 16 weeks,Mouse Kidney Aging and Alport Disease Matrix TEM,https://doi.org/10.6019/S-BIAD3708,Outreach,49,0,94

Control - 8 weeks,Mouse Kidney Aging and Alport Disease Matrix TEM,https://doi.org/10.6019/S-BIAD3708,Outreach,34,0,64

"M1 - 12 months, mutant, 4-PBA",Mouse Kidney Alport Syndrome 4-PBA TEM,https://doi.org/10.6019/S-BIAD3714,Outreach,7,0,7

"M10 - 12 months, mutant, PBS (vehicle)",Mouse Kidney Alport Syndrome 4-PBA TEM,https://doi.org/10.6019/S-BIAD3714,Outreach,6,0,4

"M11 - 12 months, mutant, PBS (vehicle)",Mouse Kidney Alport Syndrome 4-PBA TEM,https://doi.org/10.6019/S-BIAD3714,Outreach,6,0,6

"M12 - 12 months, mutant, PBS (vehicle)",Mouse Kidney Alport Syndrome 4-PBA TEM,https://doi.org/10.6019/S-BIAD3714,Outreach,5,0,5

"M2 - 12 months, mutant, 4-PBA",Mouse Kidney Alport Syndrome 4-PBA TEM,https://doi.org/10.6019/S-BIAD3714,Outreach,10,0,10

"M21 - 6 months, mutant, PBS (vehicle)",Mouse Kidney Alport Syndrome 4-PBA TEM,https://doi.org/10.6019/S-BIAD3714,Outreach,3,0,3

"M22 - 6 months, mutant, PBS (vehicle)",Mouse Kidney Alport Syndrome 4-PBA TEM,https://doi.org/10.6019/S-BIAD3714,Outreach,4,0,4

"M24 - 6 months, mutant, PBS (vehicle)",Mouse Kidney Alport Syndrome 4-PBA TEM,https://doi.org/10.6019/S-BIAD3714,Outreach,5,0,5

"M3 - 12 months, mutant, 4-PBA",Mouse Kidney Alport Syndrome 4-PBA TEM,https://doi.org/10.6019/S-BIAD3714,Outreach,7,0,7

"M6 - 12 months, WT, 4-PBA",Mouse Kidney Alport Syndrome 4-PBA TEM,https://doi.org/10.6019/S-BIAD3714,Outreach,6,0,6

"M7 - 12 months, WT, 4-PBA",Mouse Kidney Alport Syndrome 4-PBA TEM,https://doi.org/10.6019/S-BIAD3714,Outreach,5,0,5

"Mouse 1 - 6 months, mutant, 4-PBA",Mouse Kidney Alport Syndrome 4-PBA TEM,https://doi.org/10.6019/S-BIAD3714,Outreach,12,0,12

"Mouse 13 - 6 months, mutant, 4-PBA",Mouse Kidney Alport Syndrome 4-PBA TEM,https://doi.org/10.6019/S-BIAD3714,Outreach,5,0,5

"Mouse 14 - 6 months, mutant, 4-PBA",Mouse Kidney Alport Syndrome 4-PBA TEM,https://doi.org/10.6019/S-BIAD3714,Outreach,6,0,6

"Mouse 17 - 6 months, mutant, 4-PBA",Mouse Kidney Alport Syndrome 4-PBA TEM,https://doi.org/10.6019/S-BIAD3714,Outreach,12,0,12

"Mouse 2 - 6 months, mutant, 4-PBA",Mouse Kidney Alport Syndrome 4-PBA TEM,https://doi.org/10.6019/S-BIAD3714,Outreach,10,0,9

"Mouse 3 - 6 months, mutant, 4-PBA",Mouse Kidney Alport Syndrome 4-PBA TEM,https://doi.org/10.6019/S-BIAD3714,Outreach,12,0,11

"Mouse 4 - 6 months, mutant, 4-PBA",Mouse Kidney Alport Syndrome 4-PBA TEM,https://doi.org/10.6019/S-BIAD3714,Outreach,7,0,6

"Mouse 5 - 6 months, mutant, PBS (vehicle)",Mouse Kidney Alport Syndrome 4-PBA TEM,https://doi.org/10.6019/S-BIAD3714,Outreach,12,0,12

"Mouse 6 - 6 months, mutant, PBS (vehicle)",Mouse Kidney Alport Syndrome 4-PBA TEM,https://doi.org/10.6019/S-BIAD3714,Outreach,4,0,4

"Mouse 7 - 6 months, mutant, PBS (vehicle)",Mouse Kidney Alport Syndrome 4-PBA TEM,https://doi.org/10.6019/S-BIAD3714,Outreach,8,0,8

"Mouse 8 - 6 months, WT, Untreated",Mouse Kidney Alport Syndrome 4-PBA TEM,https://doi.org/10.6019/S-BIAD3714,Outreach,4,0,4

"Mouse 9 - 6 months, WT, Untreated",Mouse Kidney Alport Syndrome 4-PBA TEM,https://doi.org/10.6019/S-BIAD3714,Outreach,1,0,1

Mouse 592 - IRE1α KO doxorubicin,Mouse Kidney Podocyte IRE1α Knockout TEM,https://doi.org/10.6019/S-BIAD3703,Outreach,19,0,68

Mouse 607 - Control untreated,Mouse Kidney Podocyte IRE1α Knockout TEM,https://doi.org/10.6019/S-BIAD3703,Outreach,16,0,64

Mouse 614 - Control doxorubicin,Mouse Kidney Podocyte IRE1α Knockout TEM,https://doi.org/10.6019/S-BIAD3703,Outreach,23,0,82

Mouse 623 - IRE1α KO untreated,Mouse Kidney Podocyte IRE1α Knockout TEM,https://doi.org/10.6019/S-BIAD3703,Outreach,14,0,55

Mouse 624 - IRE1α KO doxorubicin,Mouse Kidney Podocyte IRE1α Knockout TEM,https://doi.org/10.6019/S-BIAD3703,Outreach,26,0,100

Mouse 629 - Control untreated,Mouse Kidney Podocyte IRE1α Knockout TEM,https://doi.org/10.6019/S-BIAD3703,Outreach,13,0,48

Mouse 630 - Control doxorubicin,Mouse Kidney Podocyte IRE1α Knockout TEM,https://doi.org/10.6019/S-BIAD3703,Outreach,17,0,66

Mouse 636 - IRE1α KO untreated,Mouse Kidney Podocyte IRE1α Knockout TEM,https://doi.org/10.6019/S-BIAD3703,Outreach,19,0,72

Mouse 647 - IRE1α KO untreated,Mouse Kidney Podocyte IRE1α Knockout TEM,https://doi.org/10.6019/S-BIAD3703,Outreach,15,0,56

Mouse 648 - IRE1α KO doxorubicin,Mouse Kidney Podocyte IRE1α Knockout TEM,https://doi.org/10.6019/S-BIAD3703,Outreach,16,0,64

Mouse 650 - Control untreated,Mouse Kidney Podocyte IRE1α Knockout TEM,https://doi.org/10.6019/S-BIAD3703,Outreach,14,0,48

Mouse 651 - Control doxorubicin,Mouse Kidney Podocyte IRE1α Knockout TEM,https://doi.org/10.6019/S-BIAD3703,Outreach,16,0,64

"Mouse 198 - Nox5pod+ transgenic, untreated",Mouse Kidney Podocyte NOX5 TEM,https://doi.org/10.6019/S-BIAD3720,Outreach,9,0,9

"Mouse 207 - Nox5pod+ transgenic, untreated",Mouse Kidney Podocyte NOX5 TEM,https://doi.org/10.6019/S-BIAD3720,Outreach,8,0,8

"Mouse 229 - Nox5pod+ transgenic, untreated",Mouse Kidney Podocyte NOX5 TEM,https://doi.org/10.6019/S-BIAD3720,Outreach,9,0,9

"Mouse 238 - Nox5pod+ transgenic, STZ diabetic",Mouse Kidney Podocyte NOX5 TEM,https://doi.org/10.6019/S-BIAD3720,Outreach,8,0,8

"Mouse 244 - Wild-type, STZ diabetic",Mouse Kidney Podocyte NOX5 TEM,https://doi.org/10.6019/S-BIAD3720,Outreach,11,0,11

"Mouse 247 - Wild-type, STZ diabetic",Mouse Kidney Podocyte NOX5 TEM,https://doi.org/10.6019/S-BIAD3720,Outreach,13,0,11

"Mouse 255 - Wild-type, untreated",Mouse Kidney Podocyte NOX5 TEM,https://doi.org/10.6019/S-BIAD3720,Outreach,8,0,7

"Mouse 256 - Wild-type, untreated",Mouse Kidney Podocyte NOX5 TEM,https://doi.org/10.6019/S-BIAD3720,Outreach,7,0,7

"Mouse 766 - Nox5pod+ transgenic, STZ diabetic",Mouse Kidney Podocyte NOX5 TEM,https://doi.org/10.6019/S-BIAD3720,Outreach,8,0,7

"Mouse 833 - Wild-type, STZ diabetic",Mouse Kidney Podocyte NOX5 TEM,https://doi.org/10.6019/S-BIAD3720,Outreach,12,0,12

"Mouse 834 - Nox5pod+ transgenic, STZ diabetic",Mouse Kidney Podocyte NOX5 TEM,https://doi.org/10.6019/S-BIAD3720,Outreach,15,0,13

Scramble control,Mouse MIN6 Beta Cell miR-146a-5p Inflammation TEM,https://doi.org/10.6019/S-BIAD3719,Outreach,8,0,32

Scramble control - cytokine-treated,Mouse MIN6 Beta Cell miR-146a-5p Inflammation TEM,https://doi.org/10.6019/S-BIAD3719,Outreach,8,0,32

miR-146a-5p inhibitor,Mouse MIN6 Beta Cell miR-146a-5p Inflammation TEM,https://doi.org/10.6019/S-BIAD3719,Outreach,11,0,44

miR-146a-5p inhibitor - cytokine-treated,Mouse MIN6 Beta Cell miR-146a-5p Inflammation TEM,https://doi.org/10.6019/S-BIAD3719,Outreach,10,0,36

miR-146a-5p overexpression,Mouse MIN6 Beta Cell miR-146a-5p Inflammation TEM,https://doi.org/10.6019/S-BIAD3719,Outreach,13,0,52

miR-146a-5p overexpression - cytokine-treated,Mouse MIN6 Beta Cell miR-146a-5p Inflammation TEM,https://doi.org/10.6019/S-BIAD3719,Outreach,12,0,48

Mammary gland adipocytes - TEM,Mouse Mammary Gland Adipocyte TEM,https://doi.org/10.6019/S-BIAD3710,Outreach,1,0,1

Adipose organ plasticity - TEM,Mouse Mammary Gland Adipose Plasticity TEM,https://doi.org/10.6019/S-BIAD3710,Outreach,1,0,2

Mast Cell Degranulation TEM,Mouse Mast Cell Degranulation TEM,https://doi.org/10.6019/S-BIAD3721,Outreach,14,0,13

Mouse Pancreas Pancreatitis TEM,Mouse Pancreas Pancreatitis and Tumour TEM,https://doi.org/10.6019/S-BIAD3894,Outreach,108,0,0

Mouse Pancreatic Tumour TEM,Mouse Pancreas Pancreatitis and Tumour TEM,https://doi.org/10.6019/S-BIAD3894,Outreach,117,0,0

Mouse Pancreatic Islet Beta-Cell Aging TEM,Mouse Pancreatic Islet Beta-Cell Aging TEM,https://doi.org/10.6019/S-BIAD3726,Outreach,60,0,539

Mouse C550 (Control),Mouse Pancreatic Islet Clec16a Knockout TEM,https://doi.org/10.6019/S-BIAD3893,Outreach,34,0,31

Mouse C551 (Clec16a knockout),Mouse Pancreatic Islet Clec16a Knockout TEM,https://doi.org/10.6019/S-BIAD3893,Outreach,39,0,39

Mouse D40 (Clec16a knockout),Mouse Pancreatic Islet Clec16a Knockout TEM,https://doi.org/10.6019/S-BIAD3893,Outreach,24,0,24

Mouse D54 (Control),Mouse Pancreatic Islet Clec16a Knockout TEM,https://doi.org/10.6019/S-BIAD3893,Outreach,25,0,24

Pdx1-KO and control islets,Mouse Pancreatic Islet Pdx1 Knockout TEM,https://doi.org/10.6019/S-BIAD3718,Outreach,10,0,9

PAV-1 Cell Line,PAV-1 Rat Hepatic Stellate Cell Line TEM,https://doi.org/10.6019/S-BIAD3724,Outreach,30,0,29

PAV-1 Cell Line - Mycoplasma Contamination,PAV-1 Rat Hepatic Stellate Cell Line TEM,https://doi.org/10.6019/S-BIAD3724,Outreach,48,0,46

NOX5 transgenic (2020),Podocyte-Specific NOX5 Transgenic Mouse Diabetic Nephropathy TEM,https://doi.org/10.6019/S-BIAD3715,Outreach,40,0,38

NOX5 transgenic (2025),Podocyte-Specific NOX5 Transgenic Mouse Diabetic Nephropathy TEM,https://doi.org/10.6019/S-BIAD3715,Outreach,110,0,431

Wild-type (2020),Podocyte-Specific NOX5 Transgenic Mouse Diabetic Nephropathy TEM,https://doi.org/10.6019/S-BIAD3715,Outreach,38,0,36

"Wild-type, regular diet (2025)",Podocyte-Specific NOX5 Transgenic Mouse Diabetic Nephropathy TEM,https://doi.org/10.6019/S-BIAD3715,Outreach,43,0,161

SPIONs-PEG treated and control rat organ TEM micrographs,Rat Multi-Organ Iron Oxide Nanocluster Biodistribution TEM,https://doi.org/10.6019/S-BIAD3709,Outreach,701,0,681

"Aged mouse pancreatic islet, cerebral cortex and liver",Aged Mouse Multi-Organ SEM,https://www.ebi.ac.uk/biostudies/bioimages/studies/S-BIAD3923,Internal,15,0,3448

"Guinea pig brain, skeletal muscle and skin",Guinea Pig Multi-Organ SEM,https://www.ebi.ac.uk/biostudies/bioimages/studies/S-BIAD3923,Internal,5,0,90

Human Liver SEM,Human Liver SEM,https://www.ebi.ac.uk/biostudies/bioimages/studies/S-BIAD3923,Internal,5,0,1145

Human Pancreatic Islet Organoid SEM,Human Pancreatic Islet Organoid SEM,https://www.ebi.ac.uk/biostudies/bioimages/studies/S-BIAD3923,Internal,17,0,3634

Human Pancreatic Islet SEM,Human Pancreatic Islet SEM,https://www.ebi.ac.uk/biostudies/bioimages/studies/S-BIAD3923,Internal,37,0,470

"Human Pancreatic Islet SEM, glucose-infused",Human Pancreatic Islet SEM,https://www.ebi.ac.uk/biostudies/bioimages/studies/S-BIAD3923,Internal,21,0,1901

"Human pancreatic islet, condition 1",Human Pancreatic Islet SEM,https://www.ebi.ac.uk/biostudies/bioimages/studies/S-BIAD3923,Internal,7,0,2418

"Human pancreatic islet, condition 2",Human Pancreatic Islet SEM,https://www.ebi.ac.uk/biostudies/bioimages/studies/S-BIAD3923,Internal,5,0,1191

Isolated Human Islets,Isolated Human Islets,https://doi.org/10.6019/S-BIAD3896,Internal,4,0,275

Adipose Progenitors Differentiated to Adipocytes,Mouse Adipose Progenitor Differentiation TEM,https://doi.org/10.6019/S-BIAD3728,Internal,16,0,48

"Adipose Progenitors Differentiated to Adipocytes, MIZ-treated",Mouse Adipose Progenitor Differentiation TEM,https://doi.org/10.6019/S-BIAD3728,Internal,21,0,21

Undifferentiated Adipose Progenitors,Mouse Adipose Progenitor Differentiation TEM,https://doi.org/10.6019/S-BIAD3728,Internal,29,0,29

"Mouse Brain, Liver and Pancreas SEM","Mouse Brain, Liver and Pancreas SEM",https://www.ebi.ac.uk/biostudies/bioimages/studies/S-BIAD3923,Internal,40,0,2570

"Mouse brown adipose tissue, glucose-infused",Mouse Brown Adipose Tissue SEM,https://www.ebi.ac.uk/biostudies/bioimages/studies/S-BIAD3923,Internal,3,0,104

Mouse Liver Glucokinase Immuno-EM,Mouse Liver Glucokinase Immuno-EM,https://doi.org/10.6019/S-BIAD3920,Internal,15,0,4463

"Mouse liver hepatocyte, glucose-infused",Mouse Liver Hepatocyte SEM,https://www.ebi.ac.uk/biostudies/bioimages/studies/S-BIAD3923,Internal,6,0,679

"Mouse Liver SEM, control diet vs calorie restriction",Mouse Liver SEM,https://www.ebi.ac.uk/biostudies/bioimages/studies/S-BIAD3923,Internal,18,0,5646

"Mouse liver, control diet vs calorie restriction",Mouse Liver SEM,https://www.ebi.ac.uk/biostudies/bioimages/studies/S-BIAD3923,Internal,12,0,4850

Mouse Liver and Pancreas SEM,Mouse Liver and Pancreas SEM,https://www.ebi.ac.uk/biostudies/bioimages/studies/S-BIAD3923,Internal,7,0,2943

"Mouse Liver and Pancreatic Islet SEM, weight cycling",Mouse Liver and Pancreatic Islet SEM,https://doi.org/10.6019/S-BIAD3922,Internal,28,0,5603

"Mouse liver, ctrl","Mouse Liver and Pancreatic Islet SEM, glucose-infused",https://www.ebi.ac.uk/biostudies/bioimages/studies/S-BIAD3923,Internal,6,0,3642

"Mouse liver, treatment1","Mouse Liver and Pancreatic Islet SEM, glucose-infused",https://www.ebi.ac.uk/biostudies/bioimages/studies/S-BIAD3923,Internal,5,0,3434

"Mouse liver, treatment2","Mouse Liver and Pancreatic Islet SEM, glucose-infused",https://www.ebi.ac.uk/biostudies/bioimages/studies/S-BIAD3923,Internal,5,0,1937

"Mouse pancreatic islet, ctrl","Mouse Liver and Pancreatic Islet SEM, glucose-infused",https://www.ebi.ac.uk/biostudies/bioimages/studies/S-BIAD3923,Internal,6,0,1883

"Mouse pancreatic islet, treatment1","Mouse Liver and Pancreatic Islet SEM, glucose-infused",https://www.ebi.ac.uk/biostudies/bioimages/studies/S-BIAD3923,Internal,5,0,930

"Mouse pancreatic islet, treatment2","Mouse Liver and Pancreatic Islet SEM, glucose-infused",https://www.ebi.ac.uk/biostudies/bioimages/studies/S-BIAD3923,Internal,6,0,919

"Mouse kidney, 6-month-old",Mouse Multi-Organ SEM,https://www.ebi.ac.uk/biostudies/bioimages/studies/S-BIAD3923,Internal,3,0,44

"Mouse pancreatic islet, 18-month-old",Mouse Multi-Organ SEM,https://www.ebi.ac.uk/biostudies/bioimages/studies/S-BIAD3923,Internal,1,0,208

"Mouse small intestine, 6-month-old",Mouse Multi-Organ SEM,https://www.ebi.ac.uk/biostudies/bioimages/studies/S-BIAD3923,Internal,3,0,76

Mouse Pancreas Lobe 3D EM Volume,Mouse Pancreas Tuft Cell Serial-Section EM,https://doi.org/10.6019/S-BIAD3895,Internal,0,1,0

"Mouse pancreas and liver, high-fat vs control diet",Mouse Pancreas and Liver SEM,https://www.ebi.ac.uk/biostudies/bioimages/studies/S-BIAD3923,Internal,15,0,3669

"Mouse pancreas, liver and small intestine, high-fat vs control diet","Mouse Pancreas, Liver and Intestine SEM",https://www.ebi.ac.uk/biostudies/bioimages/studies/S-BIAD3923,Internal,11,0,2700

Mouse Pancreatic Islet SEM,Mouse Pancreatic Islet SEM,https://www.ebi.ac.uk/biostudies/bioimages/studies/S-BIAD3923,Internal,11,0,3214

"Mouse pancreatic islet, control diet vs calorie restriction",Mouse Pancreatic Islet SEM,https://www.ebi.ac.uk/biostudies/bioimages/studies/S-BIAD3923,Internal,8,0,1002

Mouse Pancreatic Islet TEM,Mouse Pancreatic Islet TEM,https://www.ebi.ac.uk/biostudies/bioimages/studies/S-BIAD3923,Internal,40,0,1021

Mouse Skeletal Muscle SEM,Mouse Skeletal Muscle SEM,https://www.ebi.ac.uk/biostudies/bioimages/studies/S-BIAD3923,Internal,19,0,243

Obese Human Liver SEM,Obese Human Liver SEM,https://www.ebi.ac.uk/biostudies/bioimages/studies/S-BIAD3923,Internal,4,0,2607

U2-OS Cell SEM,U2-OS Cell SEM,https://www.ebi.ac.uk/biostudies/bioimages/studies/S-BIAD3923,Internal,5,0,5