Datasets:
Download stats/heldout.json from AutomatedScientist/og2_small: direct link, hf CLI and curl.
- Browser
- Download file 23 kB
-
https://huggingface.co/datasets/AutomatedScientist/og2_small/resolve/main/stats/heldout.json
- Command line
-
hf download hf://datasets/AutomatedScientist/og2_small/stats/heldout.json
-
curl -L -o heldout.json https://huggingface.co/datasets/AutomatedScientist/og2_small/resolve/main/stats/heldout.json
23 kB
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| 0.000199 | |
| ], | |
| [ | |
| "TAAAAAAA", | |
| 0.000199 | |
| ], | |
| [ | |
| "AAAATAAA", | |
| 0.000196 | |
| ], | |
| [ | |
| "TTTTATTT", | |
| 0.000195 | |
| ], | |
| [ | |
| "AAATAAAA", | |
| 0.000192 | |
| ], | |
| [ | |
| "GAGAGAGA", | |
| 0.000177 | |
| ] | |
| ] | |
| }, | |
| "mrna": { | |
| "tokens": 1536129, | |
| "windows": 721, | |
| "freq": { | |
| "A": 0.26335678839472465, | |
| "C": 0.23308003429399485, | |
| "G": 0.23783874921962933, | |
| "T": 0.2657185692087058, | |
| "N": 5.858882945377635e-06 | |
| }, | |
| "gc": 0.47092154258781865, | |
| "soft_masked": 0.0, | |
| "cpg_obs_exp": 0.7299990159566015, | |
| "kmers_counted": 1531010, | |
| "distinct_8mers": 65525, | |
| "entropy_bits": { | |
| "1": 1.99756, | |
| "2": 3.98013, | |
| "3": 5.95852, | |
| "4": 7.92858, | |
| "5": 9.89591, | |
| "6": 11.8599, | |
| "7": 13.81113, | |
| "8": 15.73921 | |
| }, | |
| "markov_bits_per_base": { | |
| "0": 1.99756, | |
| "1": 1.98258, | |
| "2": 1.97839, | |
| "3": 1.97006, | |
| "4": 1.96733, | |
| "5": 1.96399, | |
| "6": 1.95123, | |
| "7": 1.92808 | |
| }, | |
| "chargaff2_4mer_asymmetry": 0.0159, | |
| "top_8mers": [ | |
| [ | |
| "TGGTGGTG", | |
| 0.00037 | |
| ], | |
| [ | |
| "TTTTTTTT", | |
| 0.000317 | |
| ], | |
| [ | |
| "AAAAAAAA", | |
| 0.000314 | |
| ], | |
| [ | |
| "GGTGGTGG", | |
| 0.000309 | |
| ], | |
| [ | |
| "GTGGTGGT", | |
| 0.000285 | |
| ], | |
| [ | |
| "GCAGCAGC", | |
| 0.000167 | |
| ], | |
| [ | |
| "TGTGTGTG", | |
| 0.000165 | |
| ], | |
| [ | |
| "CAGCAGCA", | |
| 0.000163 | |
| ], | |
| [ | |
| "GTGTGTGT", | |
| 0.00016 | |
| ], | |
| [ | |
| "AGCAGCAG", | |
| 0.000159 | |
| ], | |
| [ | |
| "TGCTGCTG", | |
| 0.00015 | |
| ], | |
| [ | |
| "GAGGAGGA", | |
| 0.000148 | |
| ], | |
| [ | |
| "GCTGCTGC", | |
| 0.000134 | |
| ], | |
| [ | |
| "GGAGGAGG", | |
| 0.00013 | |
| ], | |
| [ | |
| "AGGAGGAG", | |
| 0.00013 | |
| ], | |
| [ | |
| "CTGCTGCT", | |
| 0.000127 | |
| ], | |
| [ | |
| "TTTCTTTT", | |
| 0.000126 | |
| ], | |
| [ | |
| "TGGTGCTG", | |
| 0.000123 | |
| ], | |
| [ | |
| "ATTTTTTT", | |
| 0.000122 | |
| ], | |
| [ | |
| "TGCTGGTG", | |
| 0.000121 | |
| ] | |
| ] | |
| }, | |
| "imgvr_untagged": { | |
| "tokens": 450898, | |
| "windows": 48, | |
| "freq": { | |
| "A": 0.263964355574875, | |
| "C": 0.23819799599909514, | |
| "G": 0.23149137942505843, | |
| "T": 0.26630191307124895, | |
| "N": 4.435592972246495e-05 | |
| }, | |
| "gc": 0.4697102098572119, | |
| "soft_masked": 0.0, | |
| "cpg_obs_exp": 1.0648668377922885, | |
| "kmers_counted": 450528, | |
| "distinct_8mers": 64379, | |
| "entropy_bits": { | |
| "1": 1.99729, | |
| "2": 3.98704, | |
| "3": 5.97164, | |
| "4": 7.94591, | |
| "5": 9.9159, | |
| "6": 11.87787, | |
| "7": 13.81368, | |
| "8": 15.68259 | |
| }, | |
| "markov_bits_per_base": { | |
| "0": 1.99729, | |
| "1": 1.98976, | |
| "2": 1.98459, | |
| "3": 1.97427, | |
| "4": 1.96999, | |
| "5": 1.96197, | |
| "6": 1.93582, | |
| "7": 1.86891 | |
| }, | |
| "chargaff2_4mer_asymmetry": 0.02398, | |
| "top_8mers": [ | |
| [ | |
| "TTTCTTTT", | |
| 0.00016 | |
| ], | |
| [ | |
| "CCGCCGCC", | |
| 0.000138 | |
| ], | |
| [ | |
| "CGCCGCCG", | |
| 0.000131 | |
| ], | |
| [ | |
| "AAATAAAA", | |
| 0.000127 | |
| ], | |
| [ | |
| "AAAGAAAA", | |
| 0.000127 | |
| ], | |
| [ | |
| "TTTTCTTT", | |
| 0.00012 | |
| ], | |
| [ | |
| "TTAAAAAA", | |
| 0.00012 | |
| ], | |
| [ | |
| "AAAAGAAA", | |
| 0.000115 | |
| ], | |
| [ | |
| "AAAAAATA", | |
| 0.000113 | |
| ], | |
| [ | |
| "AAAAAGAA", | |
| 0.000111 | |
| ], | |
| [ | |
| "TTTTTCTT", | |
| 0.000111 | |
| ], | |
| [ | |
| "TTCTTTTT", | |
| 0.000107 | |
| ], | |
| [ | |
| "TTTTTATT", | |
| 0.000107 | |
| ], | |
| [ | |
| "CGTCGCCG", | |
| 0.000104 | |
| ], | |
| [ | |
| "TATTTTTT", | |
| 0.000104 | |
| ], | |
| [ | |
| "AATTAAAA", | |
| 0.000102 | |
| ], | |
| [ | |
| "TTTTTTAA", | |
| 0.000102 | |
| ], | |
| [ | |
| "TCTTCTTC", | |
| 0.0001 | |
| ], | |
| [ | |
| "TTCTTCTT", | |
| 0.0001 | |
| ], | |
| [ | |
| "CGCCGCGC", | |
| 0.0001 | |
| ] | |
| ] | |
| }, | |
| "ncrna": { | |
| "tokens": 418990, | |
| "windows": 541, | |
| "freq": { | |
| "A": 0.2675051910546791, | |
| "C": 0.23523711783097448, | |
| "G": 0.23034439962767608, | |
| "T": 0.2668464641160887, | |
| "N": 6.682737058163679e-05 | |
| }, | |
| "gc": 0.46561263312663204, | |
| "soft_masked": 0.0, | |
| "cpg_obs_exp": 0.6889403249174663, | |
| "kmers_counted": 415009, | |
| "distinct_8mers": 62837, | |
| "entropy_bits": { | |
| "1": 1.99649, | |
| "2": 3.98053, | |
| "3": 5.96037, | |
| "4": 7.93547, | |
| "5": 9.90252, | |
| "6": 11.84912, | |
| "7": 13.74204, | |
| "8": 15.49707 | |
| }, | |
| "markov_bits_per_base": { | |
| "0": 1.99649, | |
| "1": 1.98404, | |
| "2": 1.97985, | |
| "3": 1.9751, | |
| "4": 1.96705, | |
| "5": 1.94661, | |
| "6": 1.89291, | |
| "7": 1.75503 | |
| }, | |
| "chargaff2_4mer_asymmetry": 0.02129, | |
| "top_8mers": [ | |
| [ | |
| "TTTTTTTT", | |
| 0.00059 | |
| ], | |
| [ | |
| "AAAAAAAA", | |
| 0.000561 | |
| ], | |
| [ | |
| "ACACACAC", | |
| 0.000333 | |
| ], | |
| [ | |
| "CACACACA", | |
| 0.000325 | |
| ], | |
| [ | |
| "ATATATAT", | |
| 0.000263 | |
| ], | |
| [ | |
| "TATATATA", | |
| 0.000251 | |
| ], | |
| [ | |
| "TATGGGGT", | |
| 0.000219 | |
| ], | |
| [ | |
| "ATTTCACC", | |
| 0.000188 | |
| ], | |
| [ | |
| "GGAATTCC", | |
| 0.000186 | |
| ], | |
| [ | |
| "GGTGAAAT", | |
| 0.000178 | |
| ], | |
| [ | |
| "GGCAGCAG", | |
| 0.000178 | |
| ], | |
| [ | |
| "ATGGGGTT", | |
| 0.000176 | |
| ], | |
| [ | |
| "AGGCAGCA", | |
| 0.000173 | |
| ], | |
| [ | |
| "GCAGCAGT", | |
| 0.000171 | |
| ], | |
| [ | |
| "GCTTTCGC", | |
| 0.000169 | |
| ], | |
| [ | |
| "ATTTTTTT", | |
| 0.000169 | |
| ], | |
| [ | |
| "GGAGGCAG", | |
| 0.000166 | |
| ], | |
| [ | |
| "TTTTCTTT", | |
| 0.000164 | |
| ], | |
| [ | |
| "CATTTCAC", | |
| 0.000164 | |
| ], | |
| [ | |
| "AAAATAAA", | |
| 0.000164 | |
| ] | |
| ] | |
| }, | |
| "imgpr": { | |
| "tokens": 102982, | |
| "windows": 9, | |
| "freq": { | |
| "A": 0.22114544289293275, | |
| "C": 0.28817657454700824, | |
| "G": 0.28605969975335493, | |
| "T": 0.20432696976170592, | |
| "N": 0.000291313044998155 | |
| }, | |
| "gc": 0.5744036055637579, | |
| "soft_masked": 0.0, | |
| "cpg_obs_exp": 1.1572082414559128, | |
| "kmers_counted": 102868, | |
| "distinct_8mers": 44691, | |
| "entropy_bits": { | |
| "1": 1.98348, | |
| "2": 3.95088, | |
| "3": 5.9108, | |
| "4": 7.86101, | |
| "5": 9.80393, | |
| "6": 11.72544, | |
| "7": 13.56557, | |
| "8": 15.11182 | |
| }, | |
| "markov_bits_per_base": { | |
| "0": 1.98348, | |
| "1": 1.96739, | |
| "2": 1.95992, | |
| "3": 1.95022, | |
| "4": 1.94291, | |
| "5": 1.92152, | |
| "6": 1.84012, | |
| "7": 1.54625 | |
| }, | |
| "chargaff2_4mer_asymmetry": 0.05696, | |
| "top_8mers": [ | |
| [ | |
| "CCGCCGCC", | |
| 0.000262 | |
| ], | |
| [ | |
| "GCCGCCGC", | |
| 0.000253 | |
| ], | |
| [ | |
| "GCCGCCGA", | |
| 0.000233 | |
| ], | |
| [ | |
| "GGCCGCCG", | |
| 0.000233 | |
| ], | |
| [ | |
| "CGCCGCCG", | |
| 0.000224 | |
| ], | |
| [ | |
| "CGGCCGGC", | |
| 0.000224 | |
| ], | |
| [ | |
| "GCCGGCGC", | |
| 0.000214 | |
| ], | |
| [ | |
| "CGGCGGCC", | |
| 0.000214 | |
| ], | |
| [ | |
| "CGGCGGCG", | |
| 0.000214 | |
| ], | |
| [ | |
| "GCGGCGGC", | |
| 0.000204 | |
| ], | |
| [ | |
| "GCGGCCGG", | |
| 0.000204 | |
| ], | |
| [ | |
| "CGGCCTGC", | |
| 0.000194 | |
| ], | |
| [ | |
| "CGGCCGCC", | |
| 0.000194 | |
| ], | |
| [ | |
| "GGCCGGCG", | |
| 0.000194 | |
| ], | |
| [ | |
| "CGCGCCGC", | |
| 0.000185 | |
| ], | |
| [ | |
| "CCGCGCCG", | |
| 0.000185 | |
| ], | |
| [ | |
| "CCTCGCCG", | |
| 0.000185 | |
| ], | |
| [ | |
| "GCCGGCCG", | |
| 0.000185 | |
| ], | |
| [ | |
| "CGCCACCA", | |
| 0.000175 | |
| ], | |
| [ | |
| "GGCCGGCC", | |
| 0.000175 | |
| ] | |
| ] | |
| }, | |
| "organelle": { | |
| "tokens": 98304, | |
| "windows": 6, | |
| "freq": { | |
| "A": 0.30926513671875, | |
| "C": 0.19118245442708334, | |
| "G": 0.20384724934895834, | |
| "T": 0.2957051595052083, | |
| "N": 0.0 | |
| }, | |
| "gc": 0.3950297037760417, | |
| "soft_masked": 0.0, | |
| "cpg_obs_exp": 0.8491540654799359, | |
| "kmers_counted": 98262, | |
| "distinct_8mers": 42858, | |
| "entropy_bits": { | |
| "1": 1.96745, | |
| "2": 3.91861, | |
| "3": 5.86483, | |
| "4": 7.80668, | |
| "5": 9.73949, | |
| "6": 11.65224, | |
| "7": 13.48583, | |
| "8": 15.01262 | |
| }, | |
| "markov_bits_per_base": { | |
| "0": 1.96745, | |
| "1": 1.95117, | |
| "2": 1.94622, | |
| "3": 1.94186, | |
| "4": 1.93281, | |
| "5": 1.91275, | |
| "6": 1.83359, | |
| "7": 1.5268 | |
| }, | |
| "chargaff2_4mer_asymmetry": 0.04905, | |
| "top_8mers": [ | |
| [ | |
| "AAAAAAAA", | |
| 0.000936 | |
| ], | |
| [ | |
| "TTTTTTTT", | |
| 0.00057 | |
| ], | |
| [ | |
| "AAAAAGAA", | |
| 0.000488 | |
| ], | |
| [ | |
| "AAAAAAAT", | |
| 0.000377 | |
| ], | |
| [ | |
| "AATAAAAA", | |
| 0.000336 | |
| ], | |
| [ | |
| "AAAAGAAA", | |
| 0.000326 | |
| ], | |
| [ | |
| "AAAAAAGA", | |
| 0.000295 | |
| ], | |
| [ | |
| "ATAAAAAA", | |
| 0.000295 | |
| ], | |
| [ | |
| "AAAAAAAG", | |
| 0.000285 | |
| ], | |
| [ | |
| "AAATAAAA", | |
| 0.000275 | |
| ], | |
| [ | |
| "GAAAAAGA", | |
| 0.000275 | |
| ], | |
| [ | |
| "TTTTCTTT", | |
| 0.000275 | |
| ], | |
| [ | |
| "GAAAAAAA", | |
| 0.000265 | |
| ], | |
| [ | |
| "AAAGAAAA", | |
| 0.000265 | |
| ], | |
| [ | |
| "AATAGAAA", | |
| 0.000265 | |
| ], | |
| [ | |
| "ATTTTTTT", | |
| 0.000254 | |
| ], | |
| [ | |
| "AAAATAAA", | |
| 0.000254 | |
| ], | |
| [ | |
| "TATATATA", | |
| 0.000244 | |
| ], | |
| [ | |
| "AAAAAATA", | |
| 0.000234 | |
| ], | |
| [ | |
| "TAAAAAAA", | |
| 0.000234 | |
| ] | |
| ] | |
| }, | |
| "promoters": { | |
| "tokens": 2400, | |
| "windows": 4, | |
| "freq": { | |
| "A": 0.27458333333333335, | |
| "C": 0.2654166666666667, | |
| "G": 0.23875, | |
| "T": 0.22125, | |
| "N": 0.0 | |
| }, | |
| "gc": 0.5041666666666667, | |
| "soft_masked": 0.0, | |
| "cpg_obs_exp": 0.6652164636738778, | |
| "kmers_counted": 2372, | |
| "distinct_8mers": 2295, | |
| "entropy_bits": { | |
| "1": 1.99428, | |
| "2": 3.96692, | |
| "3": 5.91885, | |
| "4": 7.81261, | |
| "5": 9.4968, | |
| "6": 10.57144, | |
| "7": 11.01061, | |
| "8": 11.13943 | |
| }, | |
| "markov_bits_per_base": { | |
| "0": 1.99428, | |
| "1": 1.97264, | |
| "2": 1.95194, | |
| "3": 1.89376, | |
| "4": 1.68419, | |
| "5": 1.07464, | |
| "6": 0.43918, | |
| "7": 0.12881 | |
| }, | |
| "chargaff2_4mer_asymmetry": 0.22571, | |
| "top_8mers": [ | |
| [ | |
| "AAAACAAA", | |
| 0.00253 | |
| ], | |
| [ | |
| "AAACAAAA", | |
| 0.002108 | |
| ], | |
| [ | |
| "ACAAAACA", | |
| 0.001686 | |
| ], | |
| [ | |
| "CAAAACAA", | |
| 0.001686 | |
| ], | |
| [ | |
| "CAAAGCAA", | |
| 0.001686 | |
| ], | |
| [ | |
| "AACAAAAC", | |
| 0.001686 | |
| ], | |
| [ | |
| "AAAGCAAA", | |
| 0.001265 | |
| ], | |
| [ | |
| "CCGGAAGT", | |
| 0.000843 | |
| ], | |
| [ | |
| "CCCTTCAC", | |
| 0.000843 | |
| ], | |
| [ | |
| "TTTCTTCC", | |
| 0.000843 | |
| ], | |
| [ | |
| "ATAATTAT", | |
| 0.000843 | |
| ], | |
| [ | |
| "TATATATT", | |
| 0.000843 | |
| ], | |
| [ | |
| "GGGCAAGG", | |
| 0.000843 | |
| ], | |
| [ | |
| "CAAATGAA", | |
| 0.000843 | |
| ], | |
| [ | |
| "AAATAATG", | |
| 0.000843 | |
| ], | |
| [ | |
| "AAGAAAAT", | |
| 0.000843 | |
| ], | |
| [ | |
| "CCAGGCCC", | |
| 0.000843 | |
| ], | |
| [ | |
| "CTGAAGGC", | |
| 0.000843 | |
| ], | |
| [ | |
| "AAAACGAA", | |
| 0.000843 | |
| ], | |
| [ | |
| "CACCAGCG", | |
| 0.000843 | |
| ] | |
| ] | |
| } | |
| }, | |
| "domains": { | |
| "EUKARYOTA": { | |
| "tokens": 93795142, | |
| "windows": 5942, | |
| "freq": { | |
| "A": 0.29919456809394246, | |
| "C": 0.20063549773185482, | |
| "G": 0.20047913568913836, | |
| "T": 0.2996633130530364, | |
| "N": 2.74854320280255e-05 | |
| }, | |
| "gc": 0.40112565853301546, | |
| "soft_masked": 0.44186725576896085, | |
| "cpg_obs_exp": 0.6123158781774511 | |
| }, | |
| "(untagged)": { | |
| "tokens": 26525306, | |
| "windows": 9603, | |
| "freq": { | |
| "A": 0.2554221617650707, | |
| "C": 0.24433742630527994, | |
| "G": 0.24425339334445378, | |
| "T": 0.2558360306946129, | |
| "N": 0.00015098789058267604 | |
| }, | |
| "gc": 0.4886646020872053, | |
| "soft_masked": 0.07015033115923337, | |
| "cpg_obs_exp": 1.0062358230886965 | |
| }, | |
| "BACTERIA": { | |
| "tokens": 4069883, | |
| "windows": 385, | |
| "freq": { | |
| "A": 0.22717606378365177, | |
| "C": 0.2733732149056865, | |
| "G": 0.2712242587809035, | |
| "T": 0.22794561907553607, | |
| "N": 0.0002808434542221484 | |
| }, | |
| "gc": 0.544750463288389, | |
| "soft_masked": 0.0, | |
| "cpg_obs_exp": 1.1629334494663908 | |
| }, | |
| "ARCHAEA": { | |
| "tokens": 78891, | |
| "windows": 10, | |
| "freq": { | |
| "A": 0.2690420960565844, | |
| "C": 0.22726293240040055, | |
| "G": 0.23736547895197171, | |
| "T": 0.26586049105728154, | |
| "N": 0.00046900153376177255 | |
| }, | |
| "gc": 0.46484642503867907, | |
| "soft_masked": 0.0, | |
| "cpg_obs_exp": 1.0060644332157613 | |
| } | |
| } | |
| } |