Avatarr05 commited on
Commit
02c5b81
·
verified ·
1 Parent(s): 50b0ab3

Update README.md

Browse files
Files changed (1) hide show
  1. README.md +66 -1
README.md CHANGED
@@ -40,4 +40,69 @@ tags:
40
  - Uncertainty
41
  size_categories:
42
  - 10M<n<100M
43
- ---
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
40
  - Uncertainty
41
  size_categories:
42
  - 10M<n<100M
43
+ ---
44
+
45
+ # Dist_Uncertainty – Hyperspectral Case Studies for Plant Trait Uncertainty Assessment
46
+
47
+ ## Dataset Description
48
+
49
+ This dataset contains hyperspectral remote sensing imagery and associated land cover labels used as **out-of-domain (OOD) test cases** for evaluating uncertainty estimation methods in deep learning-based plant trait retrievals. It accompanies the paper by Cherif et al. (2025, *Biogeosciences*) and supports the evaluation of a distance-based uncertainty method (Dis_UN) against traditional approaches (deep ensembles and Monte Carlo dropout).
50
+
51
+ The dataset includes two real-world hyperspectral scenes from different sensors and geographic locations:
52
+
53
+ - **EnMAP** scene over south Leipzig, Germany
54
+ - **NEON AOP** scene over the Liro site, Wisconsin, USA
55
+
56
+ Each scene comes with spectral band metadata and pixel-level land cover labels, enabling the identification of OOD components such as urban surfaces, bare ground, water bodies, and clouds — elements not represented in the training data.
57
+
58
+ The `TrainingSpectra_1522.csv` file serves as the **reference distribution** for the distance-based uncertainty method (Dis_UN): at inference time, the dissimilarity between any new unseen spectrum and this training set is computed in the predictor and embedding space to quantify how far the new data lies from the known training distribution.
59
+ ---
60
+
61
+ ## Dataset Structure
62
+
63
+ ```
64
+ Dist_Uncertainty/
65
+ ├── TrainingSpectra_1522.csv # 1522 labeled training spectra
66
+ └── CaseStudies/
67
+ ├── EnMAP/
68
+ │ ├── clip2_south.tif # EnMAP hyperspectral image (south Leipzig): Contains modified EnMAP data © DLR [2024].
69
+ │ ├── EnmapBands.csv # EnMAP band wavelengths
70
+ │ ├── southLeipzig2_mask_lc.csv # Land cover metatada (all classes)
71
+ │ └── southLeipzig2_mask_lc_veg.csv # Land cover metatada (vegetation only)
72
+ └── NEON/
73
+ ├── clip_Liro_3.tif # NEON hyperspectral image (Liro, tile 3): Contains modified NEON data
74
+ ├── NeonBands.csv # NEON band wavelengths
75
+ └── Liro3_mask_lc.csv # Land cover metatada
76
+ ```
77
+
78
+ > **Note:** The `.tif` GeoTIFF images are available as raw file downloads. The HF Dataset Viewer loads the CSV files only.
79
+
80
+ ---
81
+
82
+ ## Citation
83
+
84
+ If you use this dataset, please cite the associated paper:
85
+
86
+ > Cherif, E., Kattenborn, T., Brown, L. A., Ewald, M., Berger, K., Dao, P. D., Hank, T. B., Laliberté, E., Lu, B., and Feilhauer, H.: Uncertainty Assessment in Deep Learning-based Plant Trait Retrievals from Hyperspectral data, EGUsphere [preprint], https://doi.org/10.5194/egusphere-2025-1284, 2025.
87
+
88
+ ```bibtex
89
+ @article{cherif2025uncertainty,
90
+ author = {Cherif, Eya and Kattenborn, Teja and Brown, Luke A. and Ewald, Michael
91
+ and Berger, Katja and Dao, Phuong D. and Hank, Tobias B.
92
+ and Laliberté, Etienne and Lu, Bing and Feilhauer, Hannes},
93
+ title = {Uncertainty Assessment in Deep Learning-based Plant Trait Retrievals
94
+ from Hyperspectral data},
95
+ journal = {EGUsphere},
96
+ year = {2025},
97
+ note = {preprint},
98
+ doi = {10.5194/egusphere-2025-1284}
99
+ }
100
+ ```
101
+
102
+ ---
103
+
104
+ ## Acknowledgements
105
+
106
+ The EnMAP hyperspectral data were provided by the German Aerospace Center (DLR) through the EnMAP Science Service System (https://planning.enmap.org/).
107
+
108
+ The NEON hyperspectral data were provided by the National Ecological Observatory Network (NEON, https://data.neonscience.org).