Restore the minimal variant until the full v2 release is verified (10001-11000)
Browse filesThis view is limited to 50 files because it contains too many changes. See raw diff
- minimal/interventions/exc_dropout_p70/specimen_488683425_intervention_pair_03080.json +107 -0
- minimal/interventions/exc_dropout_p70/specimen_488683425_intervention_pair_03081.json +107 -0
- minimal/interventions/exc_dropout_p70/specimen_488683425_intervention_pair_03082.json +107 -0
- minimal/interventions/exc_dropout_p70/specimen_488683425_intervention_pair_03083.json +107 -0
- minimal/interventions/exc_dropout_p70/specimen_488683425_intervention_pair_03084.json +107 -0
- minimal/interventions/exc_dropout_p70/specimen_488683425_intervention_pair_03085.json +107 -0
- minimal/interventions/exc_dropout_p70/specimen_488683425_intervention_pair_03086.json +107 -0
- minimal/interventions/exc_dropout_p70/specimen_488683425_intervention_pair_03087.json +107 -0
- minimal/interventions/exc_dropout_p70/specimen_488683425_intervention_pair_03088.json +107 -0
- minimal/interventions/inh_dropout_p10/manifest.json +2405 -0
- minimal/interventions/inh_dropout_p10/neuronio_hay_cell1_intervention_pair_00778.json +96 -0
- minimal/interventions/inh_dropout_p10/neuronio_hay_cell1_intervention_pair_00779.json +96 -0
- minimal/interventions/inh_dropout_p10/neuronio_hay_cell1_intervention_pair_00780.json +96 -0
- minimal/interventions/inh_dropout_p10/neuronio_hay_cell1_intervention_pair_00781.json +96 -0
- minimal/interventions/inh_dropout_p10/neuronio_hay_cell1_intervention_pair_00782.json +96 -0
- minimal/interventions/inh_dropout_p10/neuronio_hay_cell1_intervention_pair_00783.json +96 -0
- minimal/interventions/inh_dropout_p10/neuronio_hay_cell1_intervention_pair_00784.json +96 -0
- minimal/interventions/inh_dropout_p10/neuronio_hay_cell1_intervention_pair_00785.json +96 -0
- minimal/interventions/inh_dropout_p10/neuronio_hay_cell1_intervention_pair_00786.json +96 -0
- minimal/interventions/inh_dropout_p10/neuronio_hay_cell1_intervention_pair_00787.json +96 -0
- minimal/interventions/inh_dropout_p10/neuronio_hay_cell1_intervention_pair_00788.json +96 -0
- minimal/interventions/inh_dropout_p10/neuronio_hay_cell1_intervention_pair_00789.json +96 -0
- minimal/interventions/inh_dropout_p10/neuronio_hay_cell1_intervention_pair_00790.json +96 -0
- minimal/interventions/inh_dropout_p10/neuronio_hay_cell1_intervention_pair_00791.json +96 -0
- minimal/interventions/inh_dropout_p10/neuronio_hay_cell1_intervention_pair_00792.json +96 -0
- minimal/interventions/inh_dropout_p10/neuronio_hay_cell1_intervention_pair_00793.json +96 -0
- minimal/interventions/inh_dropout_p10/neuronio_hay_cell1_intervention_pair_00794.json +96 -0
- minimal/interventions/inh_dropout_p10/neuronio_hay_cell1_intervention_pair_00795.json +96 -0
- minimal/interventions/inh_dropout_p10/neuronio_hay_cell1_intervention_pair_00796.json +96 -0
- minimal/interventions/inh_dropout_p10/neuronio_hay_cell1_intervention_pair_00797.json +96 -0
- minimal/interventions/inh_dropout_p10/specimen_314822529_intervention_pair_04047.json +107 -0
- minimal/interventions/inh_dropout_p10/specimen_314822529_intervention_pair_04048.json +107 -0
- minimal/interventions/inh_dropout_p10/specimen_314822529_intervention_pair_04049.json +107 -0
- minimal/interventions/inh_dropout_p10/specimen_314822529_intervention_pair_04050.json +107 -0
- minimal/interventions/inh_dropout_p10/specimen_314822529_intervention_pair_04051.json +107 -0
- minimal/interventions/inh_dropout_p10/specimen_314822529_intervention_pair_04052.json +107 -0
- minimal/interventions/inh_dropout_p10/specimen_314822529_intervention_pair_04053.json +107 -0
- minimal/interventions/inh_dropout_p10/specimen_314822529_intervention_pair_04054.json +107 -0
- minimal/interventions/inh_dropout_p10/specimen_314822529_intervention_pair_04055.json +107 -0
- minimal/interventions/inh_dropout_p10/specimen_314822529_intervention_pair_04056.json +107 -0
- minimal/interventions/inh_dropout_p10/specimen_314822529_intervention_pair_04057.json +107 -0
- minimal/interventions/inh_dropout_p10/specimen_314822529_intervention_pair_04058.json +107 -0
- minimal/interventions/inh_dropout_p10/specimen_314822529_intervention_pair_04059.json +107 -0
- minimal/interventions/inh_dropout_p10/specimen_314822529_intervention_pair_04060.json +107 -0
- minimal/interventions/inh_dropout_p10/specimen_314822529_intervention_pair_04061.json +107 -0
- minimal/interventions/inh_dropout_p10/specimen_314822529_intervention_pair_04062.json +107 -0
- minimal/interventions/inh_dropout_p10/specimen_314822529_intervention_pair_04063.json +107 -0
- minimal/interventions/inh_dropout_p10/specimen_314822529_intervention_pair_04064.json +107 -0
- minimal/interventions/inh_dropout_p10/specimen_314822529_intervention_pair_04065.json +107 -0
- minimal/interventions/inh_dropout_p10/specimen_314822529_intervention_pair_04066.json +107 -0
minimal/interventions/exc_dropout_p70/specimen_488683425_intervention_pair_03080.json
ADDED
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@@ -0,0 +1,107 @@
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| 1 |
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{
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"backend": "neuron",
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| 3 |
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"coreneuron_gpu": false,
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| 4 |
+
"duration_ms": 6000,
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| 5 |
+
"elapsed_seconds": 405.57960961199933,
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| 6 |
+
"exc_gmax_scale": 0.4204482076268573,
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| 7 |
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"generator": {
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| 8 |
+
"allen_model_id": 491766131,
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| 9 |
+
"allen_specimen_id": 488683425,
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| 10 |
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"axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um",
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| 11 |
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"backend": "neuron",
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| 12 |
+
"biophysics_hoc_sha256": null,
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| 13 |
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"celsius": 34.0,
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| 14 |
+
"code_revision": {
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| 15 |
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"commit": "112df5adf80562b47e92903f188426a5db59c0ab",
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| 16 |
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"dirty": false
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},
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| 18 |
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"data_version": "v2",
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"dt_ms": 0.025,
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| 20 |
+
"exc_gmax_scale": 0.4204482076268573,
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| 21 |
+
"fit_parameters_sha256": "8e76a569aeccb36b99d669382f42dd90740f6096e36b0ce03218eb8d4a1a38c9",
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| 22 |
+
"inh_gmax_scale": 1.0,
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| 23 |
+
"input_routing": "all_sites_by_type",
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| 24 |
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"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
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| 25 |
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"integrator": "fixed_step",
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| 26 |
+
"junction_potential_mv": -14.0,
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| 27 |
+
"mechanism_files": [
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| 28 |
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"CaDynamics.mod",
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| 29 |
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"Ca_HVA.mod",
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| 30 |
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"Ca_LVA.mod",
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"DetAMPANMDA.mod",
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"DetGABA.mod",
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"Ih.mod",
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"Im.mod",
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| 35 |
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"Im_v2.mod",
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| 36 |
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"K_P.mod",
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"K_T.mod",
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| 38 |
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"Kd.mod",
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"Kv2like.mod",
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"Kv3_1.mod",
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| 41 |
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"NaTa.mod",
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| 42 |
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"NaTs.mod",
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| 43 |
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"NaV.mod",
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| 44 |
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"Nap.mod",
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| 45 |
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"SK.mod"
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| 46 |
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],
|
| 47 |
+
"mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042",
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| 48 |
+
"morphology_sha256": "fd5e9099a24ba910d0ec426ca8f51a918bc6065bfc173edd0c4b624afffeb784",
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| 49 |
+
"neuron_version": "9.0.2",
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| 50 |
+
"nseg_policy": "allen_fit",
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| 51 |
+
"soma_samples_per_ms": 4,
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| 52 |
+
"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
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| 53 |
+
"synapse_delay_ms": 0.0,
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| 54 |
+
"synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)",
|
| 55 |
+
"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 56 |
+
"teacher": "allen_all_active",
|
| 57 |
+
"template_hoc_sha256": null,
|
| 58 |
+
"v_init_mv": -90.0
|
| 59 |
+
},
|
| 60 |
+
"inh_gmax_scale": 1.0,
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| 61 |
+
"input_event_policy": "source_neuronio_sampler_unmodified",
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| 62 |
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"input_routing": {
|
| 63 |
+
"all_traces_identical": true,
|
| 64 |
+
"defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.",
|
| 65 |
+
"duplicated_source_sites_per_sign": {
|
| 66 |
+
"max": 0,
|
| 67 |
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"mean": 0.0,
|
| 68 |
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"min": 0
|
| 69 |
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},
|
| 70 |
+
"morphology_segments": {
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| 71 |
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"max": 283,
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| 72 |
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"mean": 283.0,
|
| 73 |
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"min": 283
|
| 74 |
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},
|
| 75 |
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"n_traces": 2,
|
| 76 |
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"policy": "source_site_preserving_normalized_arclength",
|
| 77 |
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"source_sites_per_sign": {
|
| 78 |
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"max": 639,
|
| 79 |
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"mean": 639.0,
|
| 80 |
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"min": 639
|
| 81 |
+
},
|
| 82 |
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"status": "recorded",
|
| 83 |
+
"unique_source_sites_per_sign": {
|
| 84 |
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"max": 639,
|
| 85 |
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"mean": 639.0,
|
| 86 |
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"min": 639
|
| 87 |
+
},
|
| 88 |
+
"unused_source_sites_per_sign": {
|
| 89 |
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"max": 0,
|
| 90 |
+
"mean": 0.0,
|
| 91 |
+
"min": 0
|
| 92 |
+
},
|
| 93 |
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"used_sites_per_sign": {
|
| 94 |
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"max": 639,
|
| 95 |
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"mean": 639.0,
|
| 96 |
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"min": 639
|
| 97 |
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}
|
| 98 |
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},
|
| 99 |
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"intervention": "exc_dropout",
|
| 100 |
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"intervention_dose": 0.7,
|
| 101 |
+
"kind": "intervention",
|
| 102 |
+
"morphology_id": "specimen_488683425",
|
| 103 |
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"morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_488683425/model",
|
| 104 |
+
"samples": 2,
|
| 105 |
+
"shard_index": 3080,
|
| 106 |
+
"teacher_balance_label": "axobench_ei_balanced"
|
| 107 |
+
}
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minimal/interventions/exc_dropout_p70/specimen_488683425_intervention_pair_03081.json
ADDED
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{
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| 2 |
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"backend": "neuron",
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| 3 |
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"coreneuron_gpu": false,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 404.165342975999,
|
| 6 |
+
"exc_gmax_scale": 0.4204482076268573,
|
| 7 |
+
"generator": {
|
| 8 |
+
"allen_model_id": 491766131,
|
| 9 |
+
"allen_specimen_id": 488683425,
|
| 10 |
+
"axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um",
|
| 11 |
+
"backend": "neuron",
|
| 12 |
+
"biophysics_hoc_sha256": null,
|
| 13 |
+
"celsius": 34.0,
|
| 14 |
+
"code_revision": {
|
| 15 |
+
"commit": "112df5adf80562b47e92903f188426a5db59c0ab",
|
| 16 |
+
"dirty": false
|
| 17 |
+
},
|
| 18 |
+
"data_version": "v2",
|
| 19 |
+
"dt_ms": 0.025,
|
| 20 |
+
"exc_gmax_scale": 0.4204482076268573,
|
| 21 |
+
"fit_parameters_sha256": "8e76a569aeccb36b99d669382f42dd90740f6096e36b0ce03218eb8d4a1a38c9",
|
| 22 |
+
"inh_gmax_scale": 1.0,
|
| 23 |
+
"input_routing": "all_sites_by_type",
|
| 24 |
+
"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 25 |
+
"integrator": "fixed_step",
|
| 26 |
+
"junction_potential_mv": -14.0,
|
| 27 |
+
"mechanism_files": [
|
| 28 |
+
"CaDynamics.mod",
|
| 29 |
+
"Ca_HVA.mod",
|
| 30 |
+
"Ca_LVA.mod",
|
| 31 |
+
"DetAMPANMDA.mod",
|
| 32 |
+
"DetGABA.mod",
|
| 33 |
+
"Ih.mod",
|
| 34 |
+
"Im.mod",
|
| 35 |
+
"Im_v2.mod",
|
| 36 |
+
"K_P.mod",
|
| 37 |
+
"K_T.mod",
|
| 38 |
+
"Kd.mod",
|
| 39 |
+
"Kv2like.mod",
|
| 40 |
+
"Kv3_1.mod",
|
| 41 |
+
"NaTa.mod",
|
| 42 |
+
"NaTs.mod",
|
| 43 |
+
"NaV.mod",
|
| 44 |
+
"Nap.mod",
|
| 45 |
+
"SK.mod"
|
| 46 |
+
],
|
| 47 |
+
"mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042",
|
| 48 |
+
"morphology_sha256": "fd5e9099a24ba910d0ec426ca8f51a918bc6065bfc173edd0c4b624afffeb784",
|
| 49 |
+
"neuron_version": "9.0.2",
|
| 50 |
+
"nseg_policy": "allen_fit",
|
| 51 |
+
"soma_samples_per_ms": 4,
|
| 52 |
+
"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 53 |
+
"synapse_delay_ms": 0.0,
|
| 54 |
+
"synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)",
|
| 55 |
+
"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 56 |
+
"teacher": "allen_all_active",
|
| 57 |
+
"template_hoc_sha256": null,
|
| 58 |
+
"v_init_mv": -90.0
|
| 59 |
+
},
|
| 60 |
+
"inh_gmax_scale": 1.0,
|
| 61 |
+
"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 62 |
+
"input_routing": {
|
| 63 |
+
"all_traces_identical": true,
|
| 64 |
+
"defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.",
|
| 65 |
+
"duplicated_source_sites_per_sign": {
|
| 66 |
+
"max": 0,
|
| 67 |
+
"mean": 0.0,
|
| 68 |
+
"min": 0
|
| 69 |
+
},
|
| 70 |
+
"morphology_segments": {
|
| 71 |
+
"max": 283,
|
| 72 |
+
"mean": 283.0,
|
| 73 |
+
"min": 283
|
| 74 |
+
},
|
| 75 |
+
"n_traces": 2,
|
| 76 |
+
"policy": "source_site_preserving_normalized_arclength",
|
| 77 |
+
"source_sites_per_sign": {
|
| 78 |
+
"max": 639,
|
| 79 |
+
"mean": 639.0,
|
| 80 |
+
"min": 639
|
| 81 |
+
},
|
| 82 |
+
"status": "recorded",
|
| 83 |
+
"unique_source_sites_per_sign": {
|
| 84 |
+
"max": 639,
|
| 85 |
+
"mean": 639.0,
|
| 86 |
+
"min": 639
|
| 87 |
+
},
|
| 88 |
+
"unused_source_sites_per_sign": {
|
| 89 |
+
"max": 0,
|
| 90 |
+
"mean": 0.0,
|
| 91 |
+
"min": 0
|
| 92 |
+
},
|
| 93 |
+
"used_sites_per_sign": {
|
| 94 |
+
"max": 639,
|
| 95 |
+
"mean": 639.0,
|
| 96 |
+
"min": 639
|
| 97 |
+
}
|
| 98 |
+
},
|
| 99 |
+
"intervention": "exc_dropout",
|
| 100 |
+
"intervention_dose": 0.7,
|
| 101 |
+
"kind": "intervention",
|
| 102 |
+
"morphology_id": "specimen_488683425",
|
| 103 |
+
"morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_488683425/model",
|
| 104 |
+
"samples": 2,
|
| 105 |
+
"shard_index": 3081,
|
| 106 |
+
"teacher_balance_label": "axobench_ei_balanced"
|
| 107 |
+
}
|
minimal/interventions/exc_dropout_p70/specimen_488683425_intervention_pair_03082.json
ADDED
|
@@ -0,0 +1,107 @@
|
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|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "neuron",
|
| 3 |
+
"coreneuron_gpu": false,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 408.90393838900127,
|
| 6 |
+
"exc_gmax_scale": 0.4204482076268573,
|
| 7 |
+
"generator": {
|
| 8 |
+
"allen_model_id": 491766131,
|
| 9 |
+
"allen_specimen_id": 488683425,
|
| 10 |
+
"axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um",
|
| 11 |
+
"backend": "neuron",
|
| 12 |
+
"biophysics_hoc_sha256": null,
|
| 13 |
+
"celsius": 34.0,
|
| 14 |
+
"code_revision": {
|
| 15 |
+
"commit": "112df5adf80562b47e92903f188426a5db59c0ab",
|
| 16 |
+
"dirty": false
|
| 17 |
+
},
|
| 18 |
+
"data_version": "v2",
|
| 19 |
+
"dt_ms": 0.025,
|
| 20 |
+
"exc_gmax_scale": 0.4204482076268573,
|
| 21 |
+
"fit_parameters_sha256": "8e76a569aeccb36b99d669382f42dd90740f6096e36b0ce03218eb8d4a1a38c9",
|
| 22 |
+
"inh_gmax_scale": 1.0,
|
| 23 |
+
"input_routing": "all_sites_by_type",
|
| 24 |
+
"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 25 |
+
"integrator": "fixed_step",
|
| 26 |
+
"junction_potential_mv": -14.0,
|
| 27 |
+
"mechanism_files": [
|
| 28 |
+
"CaDynamics.mod",
|
| 29 |
+
"Ca_HVA.mod",
|
| 30 |
+
"Ca_LVA.mod",
|
| 31 |
+
"DetAMPANMDA.mod",
|
| 32 |
+
"DetGABA.mod",
|
| 33 |
+
"Ih.mod",
|
| 34 |
+
"Im.mod",
|
| 35 |
+
"Im_v2.mod",
|
| 36 |
+
"K_P.mod",
|
| 37 |
+
"K_T.mod",
|
| 38 |
+
"Kd.mod",
|
| 39 |
+
"Kv2like.mod",
|
| 40 |
+
"Kv3_1.mod",
|
| 41 |
+
"NaTa.mod",
|
| 42 |
+
"NaTs.mod",
|
| 43 |
+
"NaV.mod",
|
| 44 |
+
"Nap.mod",
|
| 45 |
+
"SK.mod"
|
| 46 |
+
],
|
| 47 |
+
"mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042",
|
| 48 |
+
"morphology_sha256": "fd5e9099a24ba910d0ec426ca8f51a918bc6065bfc173edd0c4b624afffeb784",
|
| 49 |
+
"neuron_version": "9.0.2",
|
| 50 |
+
"nseg_policy": "allen_fit",
|
| 51 |
+
"soma_samples_per_ms": 4,
|
| 52 |
+
"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 53 |
+
"synapse_delay_ms": 0.0,
|
| 54 |
+
"synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)",
|
| 55 |
+
"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 56 |
+
"teacher": "allen_all_active",
|
| 57 |
+
"template_hoc_sha256": null,
|
| 58 |
+
"v_init_mv": -90.0
|
| 59 |
+
},
|
| 60 |
+
"inh_gmax_scale": 1.0,
|
| 61 |
+
"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 62 |
+
"input_routing": {
|
| 63 |
+
"all_traces_identical": true,
|
| 64 |
+
"defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.",
|
| 65 |
+
"duplicated_source_sites_per_sign": {
|
| 66 |
+
"max": 0,
|
| 67 |
+
"mean": 0.0,
|
| 68 |
+
"min": 0
|
| 69 |
+
},
|
| 70 |
+
"morphology_segments": {
|
| 71 |
+
"max": 283,
|
| 72 |
+
"mean": 283.0,
|
| 73 |
+
"min": 283
|
| 74 |
+
},
|
| 75 |
+
"n_traces": 2,
|
| 76 |
+
"policy": "source_site_preserving_normalized_arclength",
|
| 77 |
+
"source_sites_per_sign": {
|
| 78 |
+
"max": 639,
|
| 79 |
+
"mean": 639.0,
|
| 80 |
+
"min": 639
|
| 81 |
+
},
|
| 82 |
+
"status": "recorded",
|
| 83 |
+
"unique_source_sites_per_sign": {
|
| 84 |
+
"max": 639,
|
| 85 |
+
"mean": 639.0,
|
| 86 |
+
"min": 639
|
| 87 |
+
},
|
| 88 |
+
"unused_source_sites_per_sign": {
|
| 89 |
+
"max": 0,
|
| 90 |
+
"mean": 0.0,
|
| 91 |
+
"min": 0
|
| 92 |
+
},
|
| 93 |
+
"used_sites_per_sign": {
|
| 94 |
+
"max": 639,
|
| 95 |
+
"mean": 639.0,
|
| 96 |
+
"min": 639
|
| 97 |
+
}
|
| 98 |
+
},
|
| 99 |
+
"intervention": "exc_dropout",
|
| 100 |
+
"intervention_dose": 0.7,
|
| 101 |
+
"kind": "intervention",
|
| 102 |
+
"morphology_id": "specimen_488683425",
|
| 103 |
+
"morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_488683425/model",
|
| 104 |
+
"samples": 2,
|
| 105 |
+
"shard_index": 3082,
|
| 106 |
+
"teacher_balance_label": "axobench_ei_balanced"
|
| 107 |
+
}
|
minimal/interventions/exc_dropout_p70/specimen_488683425_intervention_pair_03083.json
ADDED
|
@@ -0,0 +1,107 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "neuron",
|
| 3 |
+
"coreneuron_gpu": false,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 411.80397931599873,
|
| 6 |
+
"exc_gmax_scale": 0.4204482076268573,
|
| 7 |
+
"generator": {
|
| 8 |
+
"allen_model_id": 491766131,
|
| 9 |
+
"allen_specimen_id": 488683425,
|
| 10 |
+
"axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um",
|
| 11 |
+
"backend": "neuron",
|
| 12 |
+
"biophysics_hoc_sha256": null,
|
| 13 |
+
"celsius": 34.0,
|
| 14 |
+
"code_revision": {
|
| 15 |
+
"commit": "112df5adf80562b47e92903f188426a5db59c0ab",
|
| 16 |
+
"dirty": false
|
| 17 |
+
},
|
| 18 |
+
"data_version": "v2",
|
| 19 |
+
"dt_ms": 0.025,
|
| 20 |
+
"exc_gmax_scale": 0.4204482076268573,
|
| 21 |
+
"fit_parameters_sha256": "8e76a569aeccb36b99d669382f42dd90740f6096e36b0ce03218eb8d4a1a38c9",
|
| 22 |
+
"inh_gmax_scale": 1.0,
|
| 23 |
+
"input_routing": "all_sites_by_type",
|
| 24 |
+
"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 25 |
+
"integrator": "fixed_step",
|
| 26 |
+
"junction_potential_mv": -14.0,
|
| 27 |
+
"mechanism_files": [
|
| 28 |
+
"CaDynamics.mod",
|
| 29 |
+
"Ca_HVA.mod",
|
| 30 |
+
"Ca_LVA.mod",
|
| 31 |
+
"DetAMPANMDA.mod",
|
| 32 |
+
"DetGABA.mod",
|
| 33 |
+
"Ih.mod",
|
| 34 |
+
"Im.mod",
|
| 35 |
+
"Im_v2.mod",
|
| 36 |
+
"K_P.mod",
|
| 37 |
+
"K_T.mod",
|
| 38 |
+
"Kd.mod",
|
| 39 |
+
"Kv2like.mod",
|
| 40 |
+
"Kv3_1.mod",
|
| 41 |
+
"NaTa.mod",
|
| 42 |
+
"NaTs.mod",
|
| 43 |
+
"NaV.mod",
|
| 44 |
+
"Nap.mod",
|
| 45 |
+
"SK.mod"
|
| 46 |
+
],
|
| 47 |
+
"mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042",
|
| 48 |
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"morphology_sha256": "fd5e9099a24ba910d0ec426ca8f51a918bc6065bfc173edd0c4b624afffeb784",
|
| 49 |
+
"neuron_version": "9.0.2",
|
| 50 |
+
"nseg_policy": "allen_fit",
|
| 51 |
+
"soma_samples_per_ms": 4,
|
| 52 |
+
"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 53 |
+
"synapse_delay_ms": 0.0,
|
| 54 |
+
"synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)",
|
| 55 |
+
"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 56 |
+
"teacher": "allen_all_active",
|
| 57 |
+
"template_hoc_sha256": null,
|
| 58 |
+
"v_init_mv": -90.0
|
| 59 |
+
},
|
| 60 |
+
"inh_gmax_scale": 1.0,
|
| 61 |
+
"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 62 |
+
"input_routing": {
|
| 63 |
+
"all_traces_identical": true,
|
| 64 |
+
"defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.",
|
| 65 |
+
"duplicated_source_sites_per_sign": {
|
| 66 |
+
"max": 0,
|
| 67 |
+
"mean": 0.0,
|
| 68 |
+
"min": 0
|
| 69 |
+
},
|
| 70 |
+
"morphology_segments": {
|
| 71 |
+
"max": 283,
|
| 72 |
+
"mean": 283.0,
|
| 73 |
+
"min": 283
|
| 74 |
+
},
|
| 75 |
+
"n_traces": 2,
|
| 76 |
+
"policy": "source_site_preserving_normalized_arclength",
|
| 77 |
+
"source_sites_per_sign": {
|
| 78 |
+
"max": 639,
|
| 79 |
+
"mean": 639.0,
|
| 80 |
+
"min": 639
|
| 81 |
+
},
|
| 82 |
+
"status": "recorded",
|
| 83 |
+
"unique_source_sites_per_sign": {
|
| 84 |
+
"max": 639,
|
| 85 |
+
"mean": 639.0,
|
| 86 |
+
"min": 639
|
| 87 |
+
},
|
| 88 |
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"unused_source_sites_per_sign": {
|
| 89 |
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"max": 0,
|
| 90 |
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"mean": 0.0,
|
| 91 |
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"min": 0
|
| 92 |
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},
|
| 93 |
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"used_sites_per_sign": {
|
| 94 |
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"max": 639,
|
| 95 |
+
"mean": 639.0,
|
| 96 |
+
"min": 639
|
| 97 |
+
}
|
| 98 |
+
},
|
| 99 |
+
"intervention": "exc_dropout",
|
| 100 |
+
"intervention_dose": 0.7,
|
| 101 |
+
"kind": "intervention",
|
| 102 |
+
"morphology_id": "specimen_488683425",
|
| 103 |
+
"morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_488683425/model",
|
| 104 |
+
"samples": 2,
|
| 105 |
+
"shard_index": 3083,
|
| 106 |
+
"teacher_balance_label": "axobench_ei_balanced"
|
| 107 |
+
}
|
minimal/interventions/exc_dropout_p70/specimen_488683425_intervention_pair_03084.json
ADDED
|
@@ -0,0 +1,107 @@
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|
| 1 |
+
{
|
| 2 |
+
"backend": "neuron",
|
| 3 |
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"coreneuron_gpu": false,
|
| 4 |
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"duration_ms": 6000,
|
| 5 |
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"elapsed_seconds": 410.4990400550014,
|
| 6 |
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"exc_gmax_scale": 0.4204482076268573,
|
| 7 |
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"generator": {
|
| 8 |
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"allen_model_id": 491766131,
|
| 9 |
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"allen_specimen_id": 488683425,
|
| 10 |
+
"axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um",
|
| 11 |
+
"backend": "neuron",
|
| 12 |
+
"biophysics_hoc_sha256": null,
|
| 13 |
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"celsius": 34.0,
|
| 14 |
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"code_revision": {
|
| 15 |
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"commit": "112df5adf80562b47e92903f188426a5db59c0ab",
|
| 16 |
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"dirty": false
|
| 17 |
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},
|
| 18 |
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"data_version": "v2",
|
| 19 |
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"dt_ms": 0.025,
|
| 20 |
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"exc_gmax_scale": 0.4204482076268573,
|
| 21 |
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"fit_parameters_sha256": "8e76a569aeccb36b99d669382f42dd90740f6096e36b0ce03218eb8d4a1a38c9",
|
| 22 |
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"inh_gmax_scale": 1.0,
|
| 23 |
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"input_routing": "all_sites_by_type",
|
| 24 |
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"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 25 |
+
"integrator": "fixed_step",
|
| 26 |
+
"junction_potential_mv": -14.0,
|
| 27 |
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"mechanism_files": [
|
| 28 |
+
"CaDynamics.mod",
|
| 29 |
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"Ca_HVA.mod",
|
| 30 |
+
"Ca_LVA.mod",
|
| 31 |
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"DetAMPANMDA.mod",
|
| 32 |
+
"DetGABA.mod",
|
| 33 |
+
"Ih.mod",
|
| 34 |
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"Im.mod",
|
| 35 |
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"Im_v2.mod",
|
| 36 |
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"K_P.mod",
|
| 37 |
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"K_T.mod",
|
| 38 |
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"Kd.mod",
|
| 39 |
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"Kv2like.mod",
|
| 40 |
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"Kv3_1.mod",
|
| 41 |
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"NaTa.mod",
|
| 42 |
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"NaTs.mod",
|
| 43 |
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"NaV.mod",
|
| 44 |
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"Nap.mod",
|
| 45 |
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"SK.mod"
|
| 46 |
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],
|
| 47 |
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"mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042",
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| 48 |
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"morphology_sha256": "fd5e9099a24ba910d0ec426ca8f51a918bc6065bfc173edd0c4b624afffeb784",
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| 49 |
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"neuron_version": "9.0.2",
|
| 50 |
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"nseg_policy": "allen_fit",
|
| 51 |
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"soma_samples_per_ms": 4,
|
| 52 |
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"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 53 |
+
"synapse_delay_ms": 0.0,
|
| 54 |
+
"synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)",
|
| 55 |
+
"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 56 |
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"teacher": "allen_all_active",
|
| 57 |
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"template_hoc_sha256": null,
|
| 58 |
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"v_init_mv": -90.0
|
| 59 |
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},
|
| 60 |
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"inh_gmax_scale": 1.0,
|
| 61 |
+
"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 62 |
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"input_routing": {
|
| 63 |
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"all_traces_identical": true,
|
| 64 |
+
"defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.",
|
| 65 |
+
"duplicated_source_sites_per_sign": {
|
| 66 |
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"max": 0,
|
| 67 |
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"mean": 0.0,
|
| 68 |
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"min": 0
|
| 69 |
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},
|
| 70 |
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"morphology_segments": {
|
| 71 |
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"max": 283,
|
| 72 |
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"mean": 283.0,
|
| 73 |
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"min": 283
|
| 74 |
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},
|
| 75 |
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"n_traces": 2,
|
| 76 |
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"policy": "source_site_preserving_normalized_arclength",
|
| 77 |
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"source_sites_per_sign": {
|
| 78 |
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"max": 639,
|
| 79 |
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"mean": 639.0,
|
| 80 |
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"min": 639
|
| 81 |
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},
|
| 82 |
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"status": "recorded",
|
| 83 |
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"unique_source_sites_per_sign": {
|
| 84 |
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"max": 639,
|
| 85 |
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"mean": 639.0,
|
| 86 |
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"min": 639
|
| 87 |
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},
|
| 88 |
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"unused_source_sites_per_sign": {
|
| 89 |
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"max": 0,
|
| 90 |
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"mean": 0.0,
|
| 91 |
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"min": 0
|
| 92 |
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},
|
| 93 |
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"used_sites_per_sign": {
|
| 94 |
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"max": 639,
|
| 95 |
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"mean": 639.0,
|
| 96 |
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"min": 639
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| 97 |
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}
|
| 98 |
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},
|
| 99 |
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"intervention": "exc_dropout",
|
| 100 |
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"intervention_dose": 0.7,
|
| 101 |
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"kind": "intervention",
|
| 102 |
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"morphology_id": "specimen_488683425",
|
| 103 |
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"morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_488683425/model",
|
| 104 |
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"samples": 2,
|
| 105 |
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"shard_index": 3084,
|
| 106 |
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"teacher_balance_label": "axobench_ei_balanced"
|
| 107 |
+
}
|
minimal/interventions/exc_dropout_p70/specimen_488683425_intervention_pair_03085.json
ADDED
|
@@ -0,0 +1,107 @@
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|
| 1 |
+
{
|
| 2 |
+
"backend": "neuron",
|
| 3 |
+
"coreneuron_gpu": false,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
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"elapsed_seconds": 411.9780309989983,
|
| 6 |
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"exc_gmax_scale": 0.4204482076268573,
|
| 7 |
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"generator": {
|
| 8 |
+
"allen_model_id": 491766131,
|
| 9 |
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"allen_specimen_id": 488683425,
|
| 10 |
+
"axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um",
|
| 11 |
+
"backend": "neuron",
|
| 12 |
+
"biophysics_hoc_sha256": null,
|
| 13 |
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"celsius": 34.0,
|
| 14 |
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"code_revision": {
|
| 15 |
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"commit": "112df5adf80562b47e92903f188426a5db59c0ab",
|
| 16 |
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"dirty": false
|
| 17 |
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},
|
| 18 |
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"data_version": "v2",
|
| 19 |
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"dt_ms": 0.025,
|
| 20 |
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"exc_gmax_scale": 0.4204482076268573,
|
| 21 |
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"fit_parameters_sha256": "8e76a569aeccb36b99d669382f42dd90740f6096e36b0ce03218eb8d4a1a38c9",
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| 22 |
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"inh_gmax_scale": 1.0,
|
| 23 |
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"input_routing": "all_sites_by_type",
|
| 24 |
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"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 25 |
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"integrator": "fixed_step",
|
| 26 |
+
"junction_potential_mv": -14.0,
|
| 27 |
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"mechanism_files": [
|
| 28 |
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"CaDynamics.mod",
|
| 29 |
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"Ca_HVA.mod",
|
| 30 |
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"Ca_LVA.mod",
|
| 31 |
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"DetAMPANMDA.mod",
|
| 32 |
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"DetGABA.mod",
|
| 33 |
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"Ih.mod",
|
| 34 |
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"Im.mod",
|
| 35 |
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"Im_v2.mod",
|
| 36 |
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"K_P.mod",
|
| 37 |
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"K_T.mod",
|
| 38 |
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"Kd.mod",
|
| 39 |
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"Kv2like.mod",
|
| 40 |
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"Kv3_1.mod",
|
| 41 |
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"NaTa.mod",
|
| 42 |
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"NaTs.mod",
|
| 43 |
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"NaV.mod",
|
| 44 |
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"Nap.mod",
|
| 45 |
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"SK.mod"
|
| 46 |
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],
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| 47 |
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"mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042",
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| 48 |
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"morphology_sha256": "fd5e9099a24ba910d0ec426ca8f51a918bc6065bfc173edd0c4b624afffeb784",
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| 49 |
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"neuron_version": "9.0.2",
|
| 50 |
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"nseg_policy": "allen_fit",
|
| 51 |
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"soma_samples_per_ms": 4,
|
| 52 |
+
"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 53 |
+
"synapse_delay_ms": 0.0,
|
| 54 |
+
"synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)",
|
| 55 |
+
"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 56 |
+
"teacher": "allen_all_active",
|
| 57 |
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"template_hoc_sha256": null,
|
| 58 |
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"v_init_mv": -90.0
|
| 59 |
+
},
|
| 60 |
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"inh_gmax_scale": 1.0,
|
| 61 |
+
"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 62 |
+
"input_routing": {
|
| 63 |
+
"all_traces_identical": true,
|
| 64 |
+
"defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.",
|
| 65 |
+
"duplicated_source_sites_per_sign": {
|
| 66 |
+
"max": 0,
|
| 67 |
+
"mean": 0.0,
|
| 68 |
+
"min": 0
|
| 69 |
+
},
|
| 70 |
+
"morphology_segments": {
|
| 71 |
+
"max": 283,
|
| 72 |
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"mean": 283.0,
|
| 73 |
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"min": 283
|
| 74 |
+
},
|
| 75 |
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"n_traces": 2,
|
| 76 |
+
"policy": "source_site_preserving_normalized_arclength",
|
| 77 |
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"source_sites_per_sign": {
|
| 78 |
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"max": 639,
|
| 79 |
+
"mean": 639.0,
|
| 80 |
+
"min": 639
|
| 81 |
+
},
|
| 82 |
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"status": "recorded",
|
| 83 |
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"unique_source_sites_per_sign": {
|
| 84 |
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"max": 639,
|
| 85 |
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"mean": 639.0,
|
| 86 |
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"min": 639
|
| 87 |
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},
|
| 88 |
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"unused_source_sites_per_sign": {
|
| 89 |
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"max": 0,
|
| 90 |
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"mean": 0.0,
|
| 91 |
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"min": 0
|
| 92 |
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},
|
| 93 |
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"used_sites_per_sign": {
|
| 94 |
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"max": 639,
|
| 95 |
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"mean": 639.0,
|
| 96 |
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"min": 639
|
| 97 |
+
}
|
| 98 |
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},
|
| 99 |
+
"intervention": "exc_dropout",
|
| 100 |
+
"intervention_dose": 0.7,
|
| 101 |
+
"kind": "intervention",
|
| 102 |
+
"morphology_id": "specimen_488683425",
|
| 103 |
+
"morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_488683425/model",
|
| 104 |
+
"samples": 2,
|
| 105 |
+
"shard_index": 3085,
|
| 106 |
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"teacher_balance_label": "axobench_ei_balanced"
|
| 107 |
+
}
|
minimal/interventions/exc_dropout_p70/specimen_488683425_intervention_pair_03086.json
ADDED
|
@@ -0,0 +1,107 @@
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|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "neuron",
|
| 3 |
+
"coreneuron_gpu": false,
|
| 4 |
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"duration_ms": 6000,
|
| 5 |
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"elapsed_seconds": 407.9242752620012,
|
| 6 |
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"exc_gmax_scale": 0.4204482076268573,
|
| 7 |
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"generator": {
|
| 8 |
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"allen_model_id": 491766131,
|
| 9 |
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"allen_specimen_id": 488683425,
|
| 10 |
+
"axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um",
|
| 11 |
+
"backend": "neuron",
|
| 12 |
+
"biophysics_hoc_sha256": null,
|
| 13 |
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"celsius": 34.0,
|
| 14 |
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|
| 15 |
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"commit": "112df5adf80562b47e92903f188426a5db59c0ab",
|
| 16 |
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"dirty": false
|
| 17 |
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},
|
| 18 |
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"data_version": "v2",
|
| 19 |
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"dt_ms": 0.025,
|
| 20 |
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"exc_gmax_scale": 0.4204482076268573,
|
| 21 |
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"fit_parameters_sha256": "8e76a569aeccb36b99d669382f42dd90740f6096e36b0ce03218eb8d4a1a38c9",
|
| 22 |
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"inh_gmax_scale": 1.0,
|
| 23 |
+
"input_routing": "all_sites_by_type",
|
| 24 |
+
"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 25 |
+
"integrator": "fixed_step",
|
| 26 |
+
"junction_potential_mv": -14.0,
|
| 27 |
+
"mechanism_files": [
|
| 28 |
+
"CaDynamics.mod",
|
| 29 |
+
"Ca_HVA.mod",
|
| 30 |
+
"Ca_LVA.mod",
|
| 31 |
+
"DetAMPANMDA.mod",
|
| 32 |
+
"DetGABA.mod",
|
| 33 |
+
"Ih.mod",
|
| 34 |
+
"Im.mod",
|
| 35 |
+
"Im_v2.mod",
|
| 36 |
+
"K_P.mod",
|
| 37 |
+
"K_T.mod",
|
| 38 |
+
"Kd.mod",
|
| 39 |
+
"Kv2like.mod",
|
| 40 |
+
"Kv3_1.mod",
|
| 41 |
+
"NaTa.mod",
|
| 42 |
+
"NaTs.mod",
|
| 43 |
+
"NaV.mod",
|
| 44 |
+
"Nap.mod",
|
| 45 |
+
"SK.mod"
|
| 46 |
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],
|
| 47 |
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"mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042",
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| 48 |
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"morphology_sha256": "fd5e9099a24ba910d0ec426ca8f51a918bc6065bfc173edd0c4b624afffeb784",
|
| 49 |
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"neuron_version": "9.0.2",
|
| 50 |
+
"nseg_policy": "allen_fit",
|
| 51 |
+
"soma_samples_per_ms": 4,
|
| 52 |
+
"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 53 |
+
"synapse_delay_ms": 0.0,
|
| 54 |
+
"synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)",
|
| 55 |
+
"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 56 |
+
"teacher": "allen_all_active",
|
| 57 |
+
"template_hoc_sha256": null,
|
| 58 |
+
"v_init_mv": -90.0
|
| 59 |
+
},
|
| 60 |
+
"inh_gmax_scale": 1.0,
|
| 61 |
+
"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 62 |
+
"input_routing": {
|
| 63 |
+
"all_traces_identical": true,
|
| 64 |
+
"defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.",
|
| 65 |
+
"duplicated_source_sites_per_sign": {
|
| 66 |
+
"max": 0,
|
| 67 |
+
"mean": 0.0,
|
| 68 |
+
"min": 0
|
| 69 |
+
},
|
| 70 |
+
"morphology_segments": {
|
| 71 |
+
"max": 283,
|
| 72 |
+
"mean": 283.0,
|
| 73 |
+
"min": 283
|
| 74 |
+
},
|
| 75 |
+
"n_traces": 2,
|
| 76 |
+
"policy": "source_site_preserving_normalized_arclength",
|
| 77 |
+
"source_sites_per_sign": {
|
| 78 |
+
"max": 639,
|
| 79 |
+
"mean": 639.0,
|
| 80 |
+
"min": 639
|
| 81 |
+
},
|
| 82 |
+
"status": "recorded",
|
| 83 |
+
"unique_source_sites_per_sign": {
|
| 84 |
+
"max": 639,
|
| 85 |
+
"mean": 639.0,
|
| 86 |
+
"min": 639
|
| 87 |
+
},
|
| 88 |
+
"unused_source_sites_per_sign": {
|
| 89 |
+
"max": 0,
|
| 90 |
+
"mean": 0.0,
|
| 91 |
+
"min": 0
|
| 92 |
+
},
|
| 93 |
+
"used_sites_per_sign": {
|
| 94 |
+
"max": 639,
|
| 95 |
+
"mean": 639.0,
|
| 96 |
+
"min": 639
|
| 97 |
+
}
|
| 98 |
+
},
|
| 99 |
+
"intervention": "exc_dropout",
|
| 100 |
+
"intervention_dose": 0.7,
|
| 101 |
+
"kind": "intervention",
|
| 102 |
+
"morphology_id": "specimen_488683425",
|
| 103 |
+
"morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_488683425/model",
|
| 104 |
+
"samples": 2,
|
| 105 |
+
"shard_index": 3086,
|
| 106 |
+
"teacher_balance_label": "axobench_ei_balanced"
|
| 107 |
+
}
|
minimal/interventions/exc_dropout_p70/specimen_488683425_intervention_pair_03087.json
ADDED
|
@@ -0,0 +1,107 @@
|
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|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "neuron",
|
| 3 |
+
"coreneuron_gpu": false,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 403.2097690590017,
|
| 6 |
+
"exc_gmax_scale": 0.4204482076268573,
|
| 7 |
+
"generator": {
|
| 8 |
+
"allen_model_id": 491766131,
|
| 9 |
+
"allen_specimen_id": 488683425,
|
| 10 |
+
"axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um",
|
| 11 |
+
"backend": "neuron",
|
| 12 |
+
"biophysics_hoc_sha256": null,
|
| 13 |
+
"celsius": 34.0,
|
| 14 |
+
"code_revision": {
|
| 15 |
+
"commit": "112df5adf80562b47e92903f188426a5db59c0ab",
|
| 16 |
+
"dirty": false
|
| 17 |
+
},
|
| 18 |
+
"data_version": "v2",
|
| 19 |
+
"dt_ms": 0.025,
|
| 20 |
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"exc_gmax_scale": 0.4204482076268573,
|
| 21 |
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"fit_parameters_sha256": "8e76a569aeccb36b99d669382f42dd90740f6096e36b0ce03218eb8d4a1a38c9",
|
| 22 |
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"inh_gmax_scale": 1.0,
|
| 23 |
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"input_routing": "all_sites_by_type",
|
| 24 |
+
"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 25 |
+
"integrator": "fixed_step",
|
| 26 |
+
"junction_potential_mv": -14.0,
|
| 27 |
+
"mechanism_files": [
|
| 28 |
+
"CaDynamics.mod",
|
| 29 |
+
"Ca_HVA.mod",
|
| 30 |
+
"Ca_LVA.mod",
|
| 31 |
+
"DetAMPANMDA.mod",
|
| 32 |
+
"DetGABA.mod",
|
| 33 |
+
"Ih.mod",
|
| 34 |
+
"Im.mod",
|
| 35 |
+
"Im_v2.mod",
|
| 36 |
+
"K_P.mod",
|
| 37 |
+
"K_T.mod",
|
| 38 |
+
"Kd.mod",
|
| 39 |
+
"Kv2like.mod",
|
| 40 |
+
"Kv3_1.mod",
|
| 41 |
+
"NaTa.mod",
|
| 42 |
+
"NaTs.mod",
|
| 43 |
+
"NaV.mod",
|
| 44 |
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"Nap.mod",
|
| 45 |
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"SK.mod"
|
| 46 |
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],
|
| 47 |
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"mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042",
|
| 48 |
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|
| 49 |
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"neuron_version": "9.0.2",
|
| 50 |
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"nseg_policy": "allen_fit",
|
| 51 |
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"soma_samples_per_ms": 4,
|
| 52 |
+
"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 53 |
+
"synapse_delay_ms": 0.0,
|
| 54 |
+
"synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)",
|
| 55 |
+
"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 56 |
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"teacher": "allen_all_active",
|
| 57 |
+
"template_hoc_sha256": null,
|
| 58 |
+
"v_init_mv": -90.0
|
| 59 |
+
},
|
| 60 |
+
"inh_gmax_scale": 1.0,
|
| 61 |
+
"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 62 |
+
"input_routing": {
|
| 63 |
+
"all_traces_identical": true,
|
| 64 |
+
"defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.",
|
| 65 |
+
"duplicated_source_sites_per_sign": {
|
| 66 |
+
"max": 0,
|
| 67 |
+
"mean": 0.0,
|
| 68 |
+
"min": 0
|
| 69 |
+
},
|
| 70 |
+
"morphology_segments": {
|
| 71 |
+
"max": 283,
|
| 72 |
+
"mean": 283.0,
|
| 73 |
+
"min": 283
|
| 74 |
+
},
|
| 75 |
+
"n_traces": 2,
|
| 76 |
+
"policy": "source_site_preserving_normalized_arclength",
|
| 77 |
+
"source_sites_per_sign": {
|
| 78 |
+
"max": 639,
|
| 79 |
+
"mean": 639.0,
|
| 80 |
+
"min": 639
|
| 81 |
+
},
|
| 82 |
+
"status": "recorded",
|
| 83 |
+
"unique_source_sites_per_sign": {
|
| 84 |
+
"max": 639,
|
| 85 |
+
"mean": 639.0,
|
| 86 |
+
"min": 639
|
| 87 |
+
},
|
| 88 |
+
"unused_source_sites_per_sign": {
|
| 89 |
+
"max": 0,
|
| 90 |
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"mean": 0.0,
|
| 91 |
+
"min": 0
|
| 92 |
+
},
|
| 93 |
+
"used_sites_per_sign": {
|
| 94 |
+
"max": 639,
|
| 95 |
+
"mean": 639.0,
|
| 96 |
+
"min": 639
|
| 97 |
+
}
|
| 98 |
+
},
|
| 99 |
+
"intervention": "exc_dropout",
|
| 100 |
+
"intervention_dose": 0.7,
|
| 101 |
+
"kind": "intervention",
|
| 102 |
+
"morphology_id": "specimen_488683425",
|
| 103 |
+
"morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_488683425/model",
|
| 104 |
+
"samples": 2,
|
| 105 |
+
"shard_index": 3087,
|
| 106 |
+
"teacher_balance_label": "axobench_ei_balanced"
|
| 107 |
+
}
|
minimal/interventions/exc_dropout_p70/specimen_488683425_intervention_pair_03088.json
ADDED
|
@@ -0,0 +1,107 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
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|
|
|
|
|
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|
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|
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|
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|
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|
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|
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|
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|
|
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|
|
|
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|
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|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "neuron",
|
| 3 |
+
"coreneuron_gpu": false,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 406.979832715002,
|
| 6 |
+
"exc_gmax_scale": 0.4204482076268573,
|
| 7 |
+
"generator": {
|
| 8 |
+
"allen_model_id": 491766131,
|
| 9 |
+
"allen_specimen_id": 488683425,
|
| 10 |
+
"axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um",
|
| 11 |
+
"backend": "neuron",
|
| 12 |
+
"biophysics_hoc_sha256": null,
|
| 13 |
+
"celsius": 34.0,
|
| 14 |
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"code_revision": {
|
| 15 |
+
"commit": "112df5adf80562b47e92903f188426a5db59c0ab",
|
| 16 |
+
"dirty": false
|
| 17 |
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},
|
| 18 |
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"data_version": "v2",
|
| 19 |
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"dt_ms": 0.025,
|
| 20 |
+
"exc_gmax_scale": 0.4204482076268573,
|
| 21 |
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"fit_parameters_sha256": "8e76a569aeccb36b99d669382f42dd90740f6096e36b0ce03218eb8d4a1a38c9",
|
| 22 |
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"inh_gmax_scale": 1.0,
|
| 23 |
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"input_routing": "all_sites_by_type",
|
| 24 |
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"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 25 |
+
"integrator": "fixed_step",
|
| 26 |
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"junction_potential_mv": -14.0,
|
| 27 |
+
"mechanism_files": [
|
| 28 |
+
"CaDynamics.mod",
|
| 29 |
+
"Ca_HVA.mod",
|
| 30 |
+
"Ca_LVA.mod",
|
| 31 |
+
"DetAMPANMDA.mod",
|
| 32 |
+
"DetGABA.mod",
|
| 33 |
+
"Ih.mod",
|
| 34 |
+
"Im.mod",
|
| 35 |
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"Im_v2.mod",
|
| 36 |
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"K_P.mod",
|
| 37 |
+
"K_T.mod",
|
| 38 |
+
"Kd.mod",
|
| 39 |
+
"Kv2like.mod",
|
| 40 |
+
"Kv3_1.mod",
|
| 41 |
+
"NaTa.mod",
|
| 42 |
+
"NaTs.mod",
|
| 43 |
+
"NaV.mod",
|
| 44 |
+
"Nap.mod",
|
| 45 |
+
"SK.mod"
|
| 46 |
+
],
|
| 47 |
+
"mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042",
|
| 48 |
+
"morphology_sha256": "fd5e9099a24ba910d0ec426ca8f51a918bc6065bfc173edd0c4b624afffeb784",
|
| 49 |
+
"neuron_version": "9.0.2",
|
| 50 |
+
"nseg_policy": "allen_fit",
|
| 51 |
+
"soma_samples_per_ms": 4,
|
| 52 |
+
"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 53 |
+
"synapse_delay_ms": 0.0,
|
| 54 |
+
"synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)",
|
| 55 |
+
"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 56 |
+
"teacher": "allen_all_active",
|
| 57 |
+
"template_hoc_sha256": null,
|
| 58 |
+
"v_init_mv": -90.0
|
| 59 |
+
},
|
| 60 |
+
"inh_gmax_scale": 1.0,
|
| 61 |
+
"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 62 |
+
"input_routing": {
|
| 63 |
+
"all_traces_identical": true,
|
| 64 |
+
"defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.",
|
| 65 |
+
"duplicated_source_sites_per_sign": {
|
| 66 |
+
"max": 0,
|
| 67 |
+
"mean": 0.0,
|
| 68 |
+
"min": 0
|
| 69 |
+
},
|
| 70 |
+
"morphology_segments": {
|
| 71 |
+
"max": 283,
|
| 72 |
+
"mean": 283.0,
|
| 73 |
+
"min": 283
|
| 74 |
+
},
|
| 75 |
+
"n_traces": 2,
|
| 76 |
+
"policy": "source_site_preserving_normalized_arclength",
|
| 77 |
+
"source_sites_per_sign": {
|
| 78 |
+
"max": 639,
|
| 79 |
+
"mean": 639.0,
|
| 80 |
+
"min": 639
|
| 81 |
+
},
|
| 82 |
+
"status": "recorded",
|
| 83 |
+
"unique_source_sites_per_sign": {
|
| 84 |
+
"max": 639,
|
| 85 |
+
"mean": 639.0,
|
| 86 |
+
"min": 639
|
| 87 |
+
},
|
| 88 |
+
"unused_source_sites_per_sign": {
|
| 89 |
+
"max": 0,
|
| 90 |
+
"mean": 0.0,
|
| 91 |
+
"min": 0
|
| 92 |
+
},
|
| 93 |
+
"used_sites_per_sign": {
|
| 94 |
+
"max": 639,
|
| 95 |
+
"mean": 639.0,
|
| 96 |
+
"min": 639
|
| 97 |
+
}
|
| 98 |
+
},
|
| 99 |
+
"intervention": "exc_dropout",
|
| 100 |
+
"intervention_dose": 0.7,
|
| 101 |
+
"kind": "intervention",
|
| 102 |
+
"morphology_id": "specimen_488683425",
|
| 103 |
+
"morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_488683425/model",
|
| 104 |
+
"samples": 2,
|
| 105 |
+
"shard_index": 3088,
|
| 106 |
+
"teacher_balance_label": "axobench_ei_balanced"
|
| 107 |
+
}
|
minimal/interventions/inh_dropout_p10/manifest.json
ADDED
|
@@ -0,0 +1,2405 @@
|
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| 1 |
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| 2 |
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| 9 |
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| 13 |
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| 17 |
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| 18 |
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| 19 |
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| 20 |
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| 21 |
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| 22 |
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| 25 |
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| 26 |
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| 27 |
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| 28 |
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| 29 |
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| 30 |
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| 31 |
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| 33 |
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| 34 |
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| 35 |
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| 36 |
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| 37 |
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"version": 1
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}
|
minimal/interventions/inh_dropout_p10/neuronio_hay_cell1_intervention_pair_00778.json
ADDED
|
@@ -0,0 +1,96 @@
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|
|
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|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "neuron",
|
| 3 |
+
"coreneuron_gpu": false,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
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|
| 6 |
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|
| 7 |
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|
| 8 |
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|
| 9 |
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|
| 10 |
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"code_revision": {
|
| 11 |
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"commit": "112df5adf80562b47e92903f188426a5db59c0ab",
|
| 12 |
+
"dirty": false
|
| 13 |
+
},
|
| 14 |
+
"data_version": "v2",
|
| 15 |
+
"dt_ms": 0.025,
|
| 16 |
+
"exc_gmax_scale": 1.0,
|
| 17 |
+
"inh_gmax_scale": 1.0,
|
| 18 |
+
"input_routing": "all_sites_by_type",
|
| 19 |
+
"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 20 |
+
"integrator": "fixed_step",
|
| 21 |
+
"mechanism_files": [
|
| 22 |
+
"CaDynamics_E2.mod",
|
| 23 |
+
"Ca_HVA.mod",
|
| 24 |
+
"Ca_LVAst.mod",
|
| 25 |
+
"DetAMPANMDA.mod",
|
| 26 |
+
"DetGABA.mod",
|
| 27 |
+
"Ih.mod",
|
| 28 |
+
"Im.mod",
|
| 29 |
+
"K_Pst.mod",
|
| 30 |
+
"K_Tst.mod",
|
| 31 |
+
"NaTa_t.mod",
|
| 32 |
+
"NaTs2_t.mod",
|
| 33 |
+
"Nap_Et2.mod",
|
| 34 |
+
"SK_E2.mod",
|
| 35 |
+
"SKv3_1.mod"
|
| 36 |
+
],
|
| 37 |
+
"mechanisms_sha256": "f6470b942dc1bbf8ce20e5c561077bfacb294749494f4137c09634f1d283721f",
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| 38 |
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|
| 39 |
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"neuron_version": "9.0.2",
|
| 40 |
+
"nseg_policy": "d_lambda",
|
| 41 |
+
"soma_samples_per_ms": 4,
|
| 42 |
+
"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 43 |
+
"synapse_delay_ms": 0.0,
|
| 44 |
+
"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 45 |
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"teacher": "hay",
|
| 46 |
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"template_hoc_sha256": "c8c603bf3a9d1f595841b98fdb455d24301d0c4f6edbfc5f3ad67fa6b834f7fb",
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| 47 |
+
"v_init_mv": -76.0
|
| 48 |
+
},
|
| 49 |
+
"inh_gmax_scale": 1.0,
|
| 50 |
+
"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 51 |
+
"input_routing": {
|
| 52 |
+
"all_traces_identical": true,
|
| 53 |
+
"defensibility_note": "Every source site is connected: each basal/apical source site is placed on the target segment of the same compartment type nearest in normalized arclength, so several sites can share a segment.",
|
| 54 |
+
"duplicated_source_sites_per_sign": {
|
| 55 |
+
"max": 0,
|
| 56 |
+
"mean": 0.0,
|
| 57 |
+
"min": 0
|
| 58 |
+
},
|
| 59 |
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"morphology_segments": {
|
| 60 |
+
"max": 999,
|
| 61 |
+
"mean": 999.0,
|
| 62 |
+
"min": 999
|
| 63 |
+
},
|
| 64 |
+
"n_traces": 2,
|
| 65 |
+
"policy": "all_sites_by_type_arclength",
|
| 66 |
+
"source_sites_per_sign": {
|
| 67 |
+
"max": 639,
|
| 68 |
+
"mean": 639.0,
|
| 69 |
+
"min": 639
|
| 70 |
+
},
|
| 71 |
+
"status": "recorded",
|
| 72 |
+
"unique_source_sites_per_sign": {
|
| 73 |
+
"max": 639,
|
| 74 |
+
"mean": 639.0,
|
| 75 |
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"min": 639
|
| 76 |
+
},
|
| 77 |
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"unused_source_sites_per_sign": {
|
| 78 |
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"max": 0,
|
| 79 |
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"mean": 0.0,
|
| 80 |
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"min": 0
|
| 81 |
+
},
|
| 82 |
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"used_sites_per_sign": {
|
| 83 |
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"max": 639,
|
| 84 |
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"mean": 639.0,
|
| 85 |
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"min": 639
|
| 86 |
+
}
|
| 87 |
+
},
|
| 88 |
+
"intervention": "inh_dropout",
|
| 89 |
+
"intervention_dose": 0.1,
|
| 90 |
+
"kind": "intervention",
|
| 91 |
+
"morphology_id": "neuronio_hay_cell1",
|
| 92 |
+
"morphology_path": "${AXOBENCH_SOURCE_ROOT}/morphologies/cell1.asc",
|
| 93 |
+
"samples": 2,
|
| 94 |
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"shard_index": 778,
|
| 95 |
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"teacher_balance_label": "axobench_ei_balanced"
|
| 96 |
+
}
|
minimal/interventions/inh_dropout_p10/neuronio_hay_cell1_intervention_pair_00779.json
ADDED
|
@@ -0,0 +1,96 @@
|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "neuron",
|
| 3 |
+
"coreneuron_gpu": false,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 289.63045208699987,
|
| 6 |
+
"exc_gmax_scale": 1.0,
|
| 7 |
+
"generator": {
|
| 8 |
+
"backend": "neuron",
|
| 9 |
+
"biophysics_hoc_sha256": "dec2a62342faaeeca6436110472f9485e069a434ef993649c6f2820c56cc28f3",
|
| 10 |
+
"code_revision": {
|
| 11 |
+
"commit": "112df5adf80562b47e92903f188426a5db59c0ab",
|
| 12 |
+
"dirty": false
|
| 13 |
+
},
|
| 14 |
+
"data_version": "v2",
|
| 15 |
+
"dt_ms": 0.025,
|
| 16 |
+
"exc_gmax_scale": 1.0,
|
| 17 |
+
"inh_gmax_scale": 1.0,
|
| 18 |
+
"input_routing": "all_sites_by_type",
|
| 19 |
+
"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 20 |
+
"integrator": "fixed_step",
|
| 21 |
+
"mechanism_files": [
|
| 22 |
+
"CaDynamics_E2.mod",
|
| 23 |
+
"Ca_HVA.mod",
|
| 24 |
+
"Ca_LVAst.mod",
|
| 25 |
+
"DetAMPANMDA.mod",
|
| 26 |
+
"DetGABA.mod",
|
| 27 |
+
"Ih.mod",
|
| 28 |
+
"Im.mod",
|
| 29 |
+
"K_Pst.mod",
|
| 30 |
+
"K_Tst.mod",
|
| 31 |
+
"NaTa_t.mod",
|
| 32 |
+
"NaTs2_t.mod",
|
| 33 |
+
"Nap_Et2.mod",
|
| 34 |
+
"SK_E2.mod",
|
| 35 |
+
"SKv3_1.mod"
|
| 36 |
+
],
|
| 37 |
+
"mechanisms_sha256": "f6470b942dc1bbf8ce20e5c561077bfacb294749494f4137c09634f1d283721f",
|
| 38 |
+
"morphology_sha256": "a8afc0925afec1dd9241528ee6ccfdcb1c321904d876835990592c2573567383",
|
| 39 |
+
"neuron_version": "9.0.2",
|
| 40 |
+
"nseg_policy": "d_lambda",
|
| 41 |
+
"soma_samples_per_ms": 4,
|
| 42 |
+
"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 43 |
+
"synapse_delay_ms": 0.0,
|
| 44 |
+
"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 45 |
+
"teacher": "hay",
|
| 46 |
+
"template_hoc_sha256": "c8c603bf3a9d1f595841b98fdb455d24301d0c4f6edbfc5f3ad67fa6b834f7fb",
|
| 47 |
+
"v_init_mv": -76.0
|
| 48 |
+
},
|
| 49 |
+
"inh_gmax_scale": 1.0,
|
| 50 |
+
"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 51 |
+
"input_routing": {
|
| 52 |
+
"all_traces_identical": true,
|
| 53 |
+
"defensibility_note": "Every source site is connected: each basal/apical source site is placed on the target segment of the same compartment type nearest in normalized arclength, so several sites can share a segment.",
|
| 54 |
+
"duplicated_source_sites_per_sign": {
|
| 55 |
+
"max": 0,
|
| 56 |
+
"mean": 0.0,
|
| 57 |
+
"min": 0
|
| 58 |
+
},
|
| 59 |
+
"morphology_segments": {
|
| 60 |
+
"max": 999,
|
| 61 |
+
"mean": 999.0,
|
| 62 |
+
"min": 999
|
| 63 |
+
},
|
| 64 |
+
"n_traces": 2,
|
| 65 |
+
"policy": "all_sites_by_type_arclength",
|
| 66 |
+
"source_sites_per_sign": {
|
| 67 |
+
"max": 639,
|
| 68 |
+
"mean": 639.0,
|
| 69 |
+
"min": 639
|
| 70 |
+
},
|
| 71 |
+
"status": "recorded",
|
| 72 |
+
"unique_source_sites_per_sign": {
|
| 73 |
+
"max": 639,
|
| 74 |
+
"mean": 639.0,
|
| 75 |
+
"min": 639
|
| 76 |
+
},
|
| 77 |
+
"unused_source_sites_per_sign": {
|
| 78 |
+
"max": 0,
|
| 79 |
+
"mean": 0.0,
|
| 80 |
+
"min": 0
|
| 81 |
+
},
|
| 82 |
+
"used_sites_per_sign": {
|
| 83 |
+
"max": 639,
|
| 84 |
+
"mean": 639.0,
|
| 85 |
+
"min": 639
|
| 86 |
+
}
|
| 87 |
+
},
|
| 88 |
+
"intervention": "inh_dropout",
|
| 89 |
+
"intervention_dose": 0.1,
|
| 90 |
+
"kind": "intervention",
|
| 91 |
+
"morphology_id": "neuronio_hay_cell1",
|
| 92 |
+
"morphology_path": "${AXOBENCH_SOURCE_ROOT}/morphologies/cell1.asc",
|
| 93 |
+
"samples": 2,
|
| 94 |
+
"shard_index": 779,
|
| 95 |
+
"teacher_balance_label": "axobench_ei_balanced"
|
| 96 |
+
}
|
minimal/interventions/inh_dropout_p10/neuronio_hay_cell1_intervention_pair_00780.json
ADDED
|
@@ -0,0 +1,96 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "neuron",
|
| 3 |
+
"coreneuron_gpu": false,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 294.5241929699987,
|
| 6 |
+
"exc_gmax_scale": 1.0,
|
| 7 |
+
"generator": {
|
| 8 |
+
"backend": "neuron",
|
| 9 |
+
"biophysics_hoc_sha256": "dec2a62342faaeeca6436110472f9485e069a434ef993649c6f2820c56cc28f3",
|
| 10 |
+
"code_revision": {
|
| 11 |
+
"commit": "112df5adf80562b47e92903f188426a5db59c0ab",
|
| 12 |
+
"dirty": false
|
| 13 |
+
},
|
| 14 |
+
"data_version": "v2",
|
| 15 |
+
"dt_ms": 0.025,
|
| 16 |
+
"exc_gmax_scale": 1.0,
|
| 17 |
+
"inh_gmax_scale": 1.0,
|
| 18 |
+
"input_routing": "all_sites_by_type",
|
| 19 |
+
"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 20 |
+
"integrator": "fixed_step",
|
| 21 |
+
"mechanism_files": [
|
| 22 |
+
"CaDynamics_E2.mod",
|
| 23 |
+
"Ca_HVA.mod",
|
| 24 |
+
"Ca_LVAst.mod",
|
| 25 |
+
"DetAMPANMDA.mod",
|
| 26 |
+
"DetGABA.mod",
|
| 27 |
+
"Ih.mod",
|
| 28 |
+
"Im.mod",
|
| 29 |
+
"K_Pst.mod",
|
| 30 |
+
"K_Tst.mod",
|
| 31 |
+
"NaTa_t.mod",
|
| 32 |
+
"NaTs2_t.mod",
|
| 33 |
+
"Nap_Et2.mod",
|
| 34 |
+
"SK_E2.mod",
|
| 35 |
+
"SKv3_1.mod"
|
| 36 |
+
],
|
| 37 |
+
"mechanisms_sha256": "f6470b942dc1bbf8ce20e5c561077bfacb294749494f4137c09634f1d283721f",
|
| 38 |
+
"morphology_sha256": "a8afc0925afec1dd9241528ee6ccfdcb1c321904d876835990592c2573567383",
|
| 39 |
+
"neuron_version": "9.0.2",
|
| 40 |
+
"nseg_policy": "d_lambda",
|
| 41 |
+
"soma_samples_per_ms": 4,
|
| 42 |
+
"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 43 |
+
"synapse_delay_ms": 0.0,
|
| 44 |
+
"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 45 |
+
"teacher": "hay",
|
| 46 |
+
"template_hoc_sha256": "c8c603bf3a9d1f595841b98fdb455d24301d0c4f6edbfc5f3ad67fa6b834f7fb",
|
| 47 |
+
"v_init_mv": -76.0
|
| 48 |
+
},
|
| 49 |
+
"inh_gmax_scale": 1.0,
|
| 50 |
+
"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 51 |
+
"input_routing": {
|
| 52 |
+
"all_traces_identical": true,
|
| 53 |
+
"defensibility_note": "Every source site is connected: each basal/apical source site is placed on the target segment of the same compartment type nearest in normalized arclength, so several sites can share a segment.",
|
| 54 |
+
"duplicated_source_sites_per_sign": {
|
| 55 |
+
"max": 0,
|
| 56 |
+
"mean": 0.0,
|
| 57 |
+
"min": 0
|
| 58 |
+
},
|
| 59 |
+
"morphology_segments": {
|
| 60 |
+
"max": 999,
|
| 61 |
+
"mean": 999.0,
|
| 62 |
+
"min": 999
|
| 63 |
+
},
|
| 64 |
+
"n_traces": 2,
|
| 65 |
+
"policy": "all_sites_by_type_arclength",
|
| 66 |
+
"source_sites_per_sign": {
|
| 67 |
+
"max": 639,
|
| 68 |
+
"mean": 639.0,
|
| 69 |
+
"min": 639
|
| 70 |
+
},
|
| 71 |
+
"status": "recorded",
|
| 72 |
+
"unique_source_sites_per_sign": {
|
| 73 |
+
"max": 639,
|
| 74 |
+
"mean": 639.0,
|
| 75 |
+
"min": 639
|
| 76 |
+
},
|
| 77 |
+
"unused_source_sites_per_sign": {
|
| 78 |
+
"max": 0,
|
| 79 |
+
"mean": 0.0,
|
| 80 |
+
"min": 0
|
| 81 |
+
},
|
| 82 |
+
"used_sites_per_sign": {
|
| 83 |
+
"max": 639,
|
| 84 |
+
"mean": 639.0,
|
| 85 |
+
"min": 639
|
| 86 |
+
}
|
| 87 |
+
},
|
| 88 |
+
"intervention": "inh_dropout",
|
| 89 |
+
"intervention_dose": 0.1,
|
| 90 |
+
"kind": "intervention",
|
| 91 |
+
"morphology_id": "neuronio_hay_cell1",
|
| 92 |
+
"morphology_path": "${AXOBENCH_SOURCE_ROOT}/morphologies/cell1.asc",
|
| 93 |
+
"samples": 2,
|
| 94 |
+
"shard_index": 780,
|
| 95 |
+
"teacher_balance_label": "axobench_ei_balanced"
|
| 96 |
+
}
|
minimal/interventions/inh_dropout_p10/neuronio_hay_cell1_intervention_pair_00781.json
ADDED
|
@@ -0,0 +1,96 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "neuron",
|
| 3 |
+
"coreneuron_gpu": false,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 290.64614166699903,
|
| 6 |
+
"exc_gmax_scale": 1.0,
|
| 7 |
+
"generator": {
|
| 8 |
+
"backend": "neuron",
|
| 9 |
+
"biophysics_hoc_sha256": "dec2a62342faaeeca6436110472f9485e069a434ef993649c6f2820c56cc28f3",
|
| 10 |
+
"code_revision": {
|
| 11 |
+
"commit": "112df5adf80562b47e92903f188426a5db59c0ab",
|
| 12 |
+
"dirty": false
|
| 13 |
+
},
|
| 14 |
+
"data_version": "v2",
|
| 15 |
+
"dt_ms": 0.025,
|
| 16 |
+
"exc_gmax_scale": 1.0,
|
| 17 |
+
"inh_gmax_scale": 1.0,
|
| 18 |
+
"input_routing": "all_sites_by_type",
|
| 19 |
+
"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 20 |
+
"integrator": "fixed_step",
|
| 21 |
+
"mechanism_files": [
|
| 22 |
+
"CaDynamics_E2.mod",
|
| 23 |
+
"Ca_HVA.mod",
|
| 24 |
+
"Ca_LVAst.mod",
|
| 25 |
+
"DetAMPANMDA.mod",
|
| 26 |
+
"DetGABA.mod",
|
| 27 |
+
"Ih.mod",
|
| 28 |
+
"Im.mod",
|
| 29 |
+
"K_Pst.mod",
|
| 30 |
+
"K_Tst.mod",
|
| 31 |
+
"NaTa_t.mod",
|
| 32 |
+
"NaTs2_t.mod",
|
| 33 |
+
"Nap_Et2.mod",
|
| 34 |
+
"SK_E2.mod",
|
| 35 |
+
"SKv3_1.mod"
|
| 36 |
+
],
|
| 37 |
+
"mechanisms_sha256": "f6470b942dc1bbf8ce20e5c561077bfacb294749494f4137c09634f1d283721f",
|
| 38 |
+
"morphology_sha256": "a8afc0925afec1dd9241528ee6ccfdcb1c321904d876835990592c2573567383",
|
| 39 |
+
"neuron_version": "9.0.2",
|
| 40 |
+
"nseg_policy": "d_lambda",
|
| 41 |
+
"soma_samples_per_ms": 4,
|
| 42 |
+
"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 43 |
+
"synapse_delay_ms": 0.0,
|
| 44 |
+
"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 45 |
+
"teacher": "hay",
|
| 46 |
+
"template_hoc_sha256": "c8c603bf3a9d1f595841b98fdb455d24301d0c4f6edbfc5f3ad67fa6b834f7fb",
|
| 47 |
+
"v_init_mv": -76.0
|
| 48 |
+
},
|
| 49 |
+
"inh_gmax_scale": 1.0,
|
| 50 |
+
"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 51 |
+
"input_routing": {
|
| 52 |
+
"all_traces_identical": true,
|
| 53 |
+
"defensibility_note": "Every source site is connected: each basal/apical source site is placed on the target segment of the same compartment type nearest in normalized arclength, so several sites can share a segment.",
|
| 54 |
+
"duplicated_source_sites_per_sign": {
|
| 55 |
+
"max": 0,
|
| 56 |
+
"mean": 0.0,
|
| 57 |
+
"min": 0
|
| 58 |
+
},
|
| 59 |
+
"morphology_segments": {
|
| 60 |
+
"max": 999,
|
| 61 |
+
"mean": 999.0,
|
| 62 |
+
"min": 999
|
| 63 |
+
},
|
| 64 |
+
"n_traces": 2,
|
| 65 |
+
"policy": "all_sites_by_type_arclength",
|
| 66 |
+
"source_sites_per_sign": {
|
| 67 |
+
"max": 639,
|
| 68 |
+
"mean": 639.0,
|
| 69 |
+
"min": 639
|
| 70 |
+
},
|
| 71 |
+
"status": "recorded",
|
| 72 |
+
"unique_source_sites_per_sign": {
|
| 73 |
+
"max": 639,
|
| 74 |
+
"mean": 639.0,
|
| 75 |
+
"min": 639
|
| 76 |
+
},
|
| 77 |
+
"unused_source_sites_per_sign": {
|
| 78 |
+
"max": 0,
|
| 79 |
+
"mean": 0.0,
|
| 80 |
+
"min": 0
|
| 81 |
+
},
|
| 82 |
+
"used_sites_per_sign": {
|
| 83 |
+
"max": 639,
|
| 84 |
+
"mean": 639.0,
|
| 85 |
+
"min": 639
|
| 86 |
+
}
|
| 87 |
+
},
|
| 88 |
+
"intervention": "inh_dropout",
|
| 89 |
+
"intervention_dose": 0.1,
|
| 90 |
+
"kind": "intervention",
|
| 91 |
+
"morphology_id": "neuronio_hay_cell1",
|
| 92 |
+
"morphology_path": "${AXOBENCH_SOURCE_ROOT}/morphologies/cell1.asc",
|
| 93 |
+
"samples": 2,
|
| 94 |
+
"shard_index": 781,
|
| 95 |
+
"teacher_balance_label": "axobench_ei_balanced"
|
| 96 |
+
}
|
minimal/interventions/inh_dropout_p10/neuronio_hay_cell1_intervention_pair_00782.json
ADDED
|
@@ -0,0 +1,96 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "neuron",
|
| 3 |
+
"coreneuron_gpu": false,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 295.8009263919994,
|
| 6 |
+
"exc_gmax_scale": 1.0,
|
| 7 |
+
"generator": {
|
| 8 |
+
"backend": "neuron",
|
| 9 |
+
"biophysics_hoc_sha256": "dec2a62342faaeeca6436110472f9485e069a434ef993649c6f2820c56cc28f3",
|
| 10 |
+
"code_revision": {
|
| 11 |
+
"commit": "112df5adf80562b47e92903f188426a5db59c0ab",
|
| 12 |
+
"dirty": false
|
| 13 |
+
},
|
| 14 |
+
"data_version": "v2",
|
| 15 |
+
"dt_ms": 0.025,
|
| 16 |
+
"exc_gmax_scale": 1.0,
|
| 17 |
+
"inh_gmax_scale": 1.0,
|
| 18 |
+
"input_routing": "all_sites_by_type",
|
| 19 |
+
"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 20 |
+
"integrator": "fixed_step",
|
| 21 |
+
"mechanism_files": [
|
| 22 |
+
"CaDynamics_E2.mod",
|
| 23 |
+
"Ca_HVA.mod",
|
| 24 |
+
"Ca_LVAst.mod",
|
| 25 |
+
"DetAMPANMDA.mod",
|
| 26 |
+
"DetGABA.mod",
|
| 27 |
+
"Ih.mod",
|
| 28 |
+
"Im.mod",
|
| 29 |
+
"K_Pst.mod",
|
| 30 |
+
"K_Tst.mod",
|
| 31 |
+
"NaTa_t.mod",
|
| 32 |
+
"NaTs2_t.mod",
|
| 33 |
+
"Nap_Et2.mod",
|
| 34 |
+
"SK_E2.mod",
|
| 35 |
+
"SKv3_1.mod"
|
| 36 |
+
],
|
| 37 |
+
"mechanisms_sha256": "f6470b942dc1bbf8ce20e5c561077bfacb294749494f4137c09634f1d283721f",
|
| 38 |
+
"morphology_sha256": "a8afc0925afec1dd9241528ee6ccfdcb1c321904d876835990592c2573567383",
|
| 39 |
+
"neuron_version": "9.0.2",
|
| 40 |
+
"nseg_policy": "d_lambda",
|
| 41 |
+
"soma_samples_per_ms": 4,
|
| 42 |
+
"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 43 |
+
"synapse_delay_ms": 0.0,
|
| 44 |
+
"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 45 |
+
"teacher": "hay",
|
| 46 |
+
"template_hoc_sha256": "c8c603bf3a9d1f595841b98fdb455d24301d0c4f6edbfc5f3ad67fa6b834f7fb",
|
| 47 |
+
"v_init_mv": -76.0
|
| 48 |
+
},
|
| 49 |
+
"inh_gmax_scale": 1.0,
|
| 50 |
+
"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 51 |
+
"input_routing": {
|
| 52 |
+
"all_traces_identical": true,
|
| 53 |
+
"defensibility_note": "Every source site is connected: each basal/apical source site is placed on the target segment of the same compartment type nearest in normalized arclength, so several sites can share a segment.",
|
| 54 |
+
"duplicated_source_sites_per_sign": {
|
| 55 |
+
"max": 0,
|
| 56 |
+
"mean": 0.0,
|
| 57 |
+
"min": 0
|
| 58 |
+
},
|
| 59 |
+
"morphology_segments": {
|
| 60 |
+
"max": 999,
|
| 61 |
+
"mean": 999.0,
|
| 62 |
+
"min": 999
|
| 63 |
+
},
|
| 64 |
+
"n_traces": 2,
|
| 65 |
+
"policy": "all_sites_by_type_arclength",
|
| 66 |
+
"source_sites_per_sign": {
|
| 67 |
+
"max": 639,
|
| 68 |
+
"mean": 639.0,
|
| 69 |
+
"min": 639
|
| 70 |
+
},
|
| 71 |
+
"status": "recorded",
|
| 72 |
+
"unique_source_sites_per_sign": {
|
| 73 |
+
"max": 639,
|
| 74 |
+
"mean": 639.0,
|
| 75 |
+
"min": 639
|
| 76 |
+
},
|
| 77 |
+
"unused_source_sites_per_sign": {
|
| 78 |
+
"max": 0,
|
| 79 |
+
"mean": 0.0,
|
| 80 |
+
"min": 0
|
| 81 |
+
},
|
| 82 |
+
"used_sites_per_sign": {
|
| 83 |
+
"max": 639,
|
| 84 |
+
"mean": 639.0,
|
| 85 |
+
"min": 639
|
| 86 |
+
}
|
| 87 |
+
},
|
| 88 |
+
"intervention": "inh_dropout",
|
| 89 |
+
"intervention_dose": 0.1,
|
| 90 |
+
"kind": "intervention",
|
| 91 |
+
"morphology_id": "neuronio_hay_cell1",
|
| 92 |
+
"morphology_path": "${AXOBENCH_SOURCE_ROOT}/morphologies/cell1.asc",
|
| 93 |
+
"samples": 2,
|
| 94 |
+
"shard_index": 782,
|
| 95 |
+
"teacher_balance_label": "axobench_ei_balanced"
|
| 96 |
+
}
|
minimal/interventions/inh_dropout_p10/neuronio_hay_cell1_intervention_pair_00783.json
ADDED
|
@@ -0,0 +1,96 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "neuron",
|
| 3 |
+
"coreneuron_gpu": false,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 290.8301687050007,
|
| 6 |
+
"exc_gmax_scale": 1.0,
|
| 7 |
+
"generator": {
|
| 8 |
+
"backend": "neuron",
|
| 9 |
+
"biophysics_hoc_sha256": "dec2a62342faaeeca6436110472f9485e069a434ef993649c6f2820c56cc28f3",
|
| 10 |
+
"code_revision": {
|
| 11 |
+
"commit": "112df5adf80562b47e92903f188426a5db59c0ab",
|
| 12 |
+
"dirty": false
|
| 13 |
+
},
|
| 14 |
+
"data_version": "v2",
|
| 15 |
+
"dt_ms": 0.025,
|
| 16 |
+
"exc_gmax_scale": 1.0,
|
| 17 |
+
"inh_gmax_scale": 1.0,
|
| 18 |
+
"input_routing": "all_sites_by_type",
|
| 19 |
+
"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 20 |
+
"integrator": "fixed_step",
|
| 21 |
+
"mechanism_files": [
|
| 22 |
+
"CaDynamics_E2.mod",
|
| 23 |
+
"Ca_HVA.mod",
|
| 24 |
+
"Ca_LVAst.mod",
|
| 25 |
+
"DetAMPANMDA.mod",
|
| 26 |
+
"DetGABA.mod",
|
| 27 |
+
"Ih.mod",
|
| 28 |
+
"Im.mod",
|
| 29 |
+
"K_Pst.mod",
|
| 30 |
+
"K_Tst.mod",
|
| 31 |
+
"NaTa_t.mod",
|
| 32 |
+
"NaTs2_t.mod",
|
| 33 |
+
"Nap_Et2.mod",
|
| 34 |
+
"SK_E2.mod",
|
| 35 |
+
"SKv3_1.mod"
|
| 36 |
+
],
|
| 37 |
+
"mechanisms_sha256": "f6470b942dc1bbf8ce20e5c561077bfacb294749494f4137c09634f1d283721f",
|
| 38 |
+
"morphology_sha256": "a8afc0925afec1dd9241528ee6ccfdcb1c321904d876835990592c2573567383",
|
| 39 |
+
"neuron_version": "9.0.2",
|
| 40 |
+
"nseg_policy": "d_lambda",
|
| 41 |
+
"soma_samples_per_ms": 4,
|
| 42 |
+
"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 43 |
+
"synapse_delay_ms": 0.0,
|
| 44 |
+
"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 45 |
+
"teacher": "hay",
|
| 46 |
+
"template_hoc_sha256": "c8c603bf3a9d1f595841b98fdb455d24301d0c4f6edbfc5f3ad67fa6b834f7fb",
|
| 47 |
+
"v_init_mv": -76.0
|
| 48 |
+
},
|
| 49 |
+
"inh_gmax_scale": 1.0,
|
| 50 |
+
"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 51 |
+
"input_routing": {
|
| 52 |
+
"all_traces_identical": true,
|
| 53 |
+
"defensibility_note": "Every source site is connected: each basal/apical source site is placed on the target segment of the same compartment type nearest in normalized arclength, so several sites can share a segment.",
|
| 54 |
+
"duplicated_source_sites_per_sign": {
|
| 55 |
+
"max": 0,
|
| 56 |
+
"mean": 0.0,
|
| 57 |
+
"min": 0
|
| 58 |
+
},
|
| 59 |
+
"morphology_segments": {
|
| 60 |
+
"max": 999,
|
| 61 |
+
"mean": 999.0,
|
| 62 |
+
"min": 999
|
| 63 |
+
},
|
| 64 |
+
"n_traces": 2,
|
| 65 |
+
"policy": "all_sites_by_type_arclength",
|
| 66 |
+
"source_sites_per_sign": {
|
| 67 |
+
"max": 639,
|
| 68 |
+
"mean": 639.0,
|
| 69 |
+
"min": 639
|
| 70 |
+
},
|
| 71 |
+
"status": "recorded",
|
| 72 |
+
"unique_source_sites_per_sign": {
|
| 73 |
+
"max": 639,
|
| 74 |
+
"mean": 639.0,
|
| 75 |
+
"min": 639
|
| 76 |
+
},
|
| 77 |
+
"unused_source_sites_per_sign": {
|
| 78 |
+
"max": 0,
|
| 79 |
+
"mean": 0.0,
|
| 80 |
+
"min": 0
|
| 81 |
+
},
|
| 82 |
+
"used_sites_per_sign": {
|
| 83 |
+
"max": 639,
|
| 84 |
+
"mean": 639.0,
|
| 85 |
+
"min": 639
|
| 86 |
+
}
|
| 87 |
+
},
|
| 88 |
+
"intervention": "inh_dropout",
|
| 89 |
+
"intervention_dose": 0.1,
|
| 90 |
+
"kind": "intervention",
|
| 91 |
+
"morphology_id": "neuronio_hay_cell1",
|
| 92 |
+
"morphology_path": "${AXOBENCH_SOURCE_ROOT}/morphologies/cell1.asc",
|
| 93 |
+
"samples": 2,
|
| 94 |
+
"shard_index": 783,
|
| 95 |
+
"teacher_balance_label": "axobench_ei_balanced"
|
| 96 |
+
}
|
minimal/interventions/inh_dropout_p10/neuronio_hay_cell1_intervention_pair_00784.json
ADDED
|
@@ -0,0 +1,96 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "neuron",
|
| 3 |
+
"coreneuron_gpu": false,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 290.2376162750006,
|
| 6 |
+
"exc_gmax_scale": 1.0,
|
| 7 |
+
"generator": {
|
| 8 |
+
"backend": "neuron",
|
| 9 |
+
"biophysics_hoc_sha256": "dec2a62342faaeeca6436110472f9485e069a434ef993649c6f2820c56cc28f3",
|
| 10 |
+
"code_revision": {
|
| 11 |
+
"commit": "112df5adf80562b47e92903f188426a5db59c0ab",
|
| 12 |
+
"dirty": false
|
| 13 |
+
},
|
| 14 |
+
"data_version": "v2",
|
| 15 |
+
"dt_ms": 0.025,
|
| 16 |
+
"exc_gmax_scale": 1.0,
|
| 17 |
+
"inh_gmax_scale": 1.0,
|
| 18 |
+
"input_routing": "all_sites_by_type",
|
| 19 |
+
"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 20 |
+
"integrator": "fixed_step",
|
| 21 |
+
"mechanism_files": [
|
| 22 |
+
"CaDynamics_E2.mod",
|
| 23 |
+
"Ca_HVA.mod",
|
| 24 |
+
"Ca_LVAst.mod",
|
| 25 |
+
"DetAMPANMDA.mod",
|
| 26 |
+
"DetGABA.mod",
|
| 27 |
+
"Ih.mod",
|
| 28 |
+
"Im.mod",
|
| 29 |
+
"K_Pst.mod",
|
| 30 |
+
"K_Tst.mod",
|
| 31 |
+
"NaTa_t.mod",
|
| 32 |
+
"NaTs2_t.mod",
|
| 33 |
+
"Nap_Et2.mod",
|
| 34 |
+
"SK_E2.mod",
|
| 35 |
+
"SKv3_1.mod"
|
| 36 |
+
],
|
| 37 |
+
"mechanisms_sha256": "f6470b942dc1bbf8ce20e5c561077bfacb294749494f4137c09634f1d283721f",
|
| 38 |
+
"morphology_sha256": "a8afc0925afec1dd9241528ee6ccfdcb1c321904d876835990592c2573567383",
|
| 39 |
+
"neuron_version": "9.0.2",
|
| 40 |
+
"nseg_policy": "d_lambda",
|
| 41 |
+
"soma_samples_per_ms": 4,
|
| 42 |
+
"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 43 |
+
"synapse_delay_ms": 0.0,
|
| 44 |
+
"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 45 |
+
"teacher": "hay",
|
| 46 |
+
"template_hoc_sha256": "c8c603bf3a9d1f595841b98fdb455d24301d0c4f6edbfc5f3ad67fa6b834f7fb",
|
| 47 |
+
"v_init_mv": -76.0
|
| 48 |
+
},
|
| 49 |
+
"inh_gmax_scale": 1.0,
|
| 50 |
+
"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 51 |
+
"input_routing": {
|
| 52 |
+
"all_traces_identical": true,
|
| 53 |
+
"defensibility_note": "Every source site is connected: each basal/apical source site is placed on the target segment of the same compartment type nearest in normalized arclength, so several sites can share a segment.",
|
| 54 |
+
"duplicated_source_sites_per_sign": {
|
| 55 |
+
"max": 0,
|
| 56 |
+
"mean": 0.0,
|
| 57 |
+
"min": 0
|
| 58 |
+
},
|
| 59 |
+
"morphology_segments": {
|
| 60 |
+
"max": 999,
|
| 61 |
+
"mean": 999.0,
|
| 62 |
+
"min": 999
|
| 63 |
+
},
|
| 64 |
+
"n_traces": 2,
|
| 65 |
+
"policy": "all_sites_by_type_arclength",
|
| 66 |
+
"source_sites_per_sign": {
|
| 67 |
+
"max": 639,
|
| 68 |
+
"mean": 639.0,
|
| 69 |
+
"min": 639
|
| 70 |
+
},
|
| 71 |
+
"status": "recorded",
|
| 72 |
+
"unique_source_sites_per_sign": {
|
| 73 |
+
"max": 639,
|
| 74 |
+
"mean": 639.0,
|
| 75 |
+
"min": 639
|
| 76 |
+
},
|
| 77 |
+
"unused_source_sites_per_sign": {
|
| 78 |
+
"max": 0,
|
| 79 |
+
"mean": 0.0,
|
| 80 |
+
"min": 0
|
| 81 |
+
},
|
| 82 |
+
"used_sites_per_sign": {
|
| 83 |
+
"max": 639,
|
| 84 |
+
"mean": 639.0,
|
| 85 |
+
"min": 639
|
| 86 |
+
}
|
| 87 |
+
},
|
| 88 |
+
"intervention": "inh_dropout",
|
| 89 |
+
"intervention_dose": 0.1,
|
| 90 |
+
"kind": "intervention",
|
| 91 |
+
"morphology_id": "neuronio_hay_cell1",
|
| 92 |
+
"morphology_path": "${AXOBENCH_SOURCE_ROOT}/morphologies/cell1.asc",
|
| 93 |
+
"samples": 2,
|
| 94 |
+
"shard_index": 784,
|
| 95 |
+
"teacher_balance_label": "axobench_ei_balanced"
|
| 96 |
+
}
|
minimal/interventions/inh_dropout_p10/neuronio_hay_cell1_intervention_pair_00785.json
ADDED
|
@@ -0,0 +1,96 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "neuron",
|
| 3 |
+
"coreneuron_gpu": false,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 291.0045003910018,
|
| 6 |
+
"exc_gmax_scale": 1.0,
|
| 7 |
+
"generator": {
|
| 8 |
+
"backend": "neuron",
|
| 9 |
+
"biophysics_hoc_sha256": "dec2a62342faaeeca6436110472f9485e069a434ef993649c6f2820c56cc28f3",
|
| 10 |
+
"code_revision": {
|
| 11 |
+
"commit": "112df5adf80562b47e92903f188426a5db59c0ab",
|
| 12 |
+
"dirty": false
|
| 13 |
+
},
|
| 14 |
+
"data_version": "v2",
|
| 15 |
+
"dt_ms": 0.025,
|
| 16 |
+
"exc_gmax_scale": 1.0,
|
| 17 |
+
"inh_gmax_scale": 1.0,
|
| 18 |
+
"input_routing": "all_sites_by_type",
|
| 19 |
+
"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 20 |
+
"integrator": "fixed_step",
|
| 21 |
+
"mechanism_files": [
|
| 22 |
+
"CaDynamics_E2.mod",
|
| 23 |
+
"Ca_HVA.mod",
|
| 24 |
+
"Ca_LVAst.mod",
|
| 25 |
+
"DetAMPANMDA.mod",
|
| 26 |
+
"DetGABA.mod",
|
| 27 |
+
"Ih.mod",
|
| 28 |
+
"Im.mod",
|
| 29 |
+
"K_Pst.mod",
|
| 30 |
+
"K_Tst.mod",
|
| 31 |
+
"NaTa_t.mod",
|
| 32 |
+
"NaTs2_t.mod",
|
| 33 |
+
"Nap_Et2.mod",
|
| 34 |
+
"SK_E2.mod",
|
| 35 |
+
"SKv3_1.mod"
|
| 36 |
+
],
|
| 37 |
+
"mechanisms_sha256": "f6470b942dc1bbf8ce20e5c561077bfacb294749494f4137c09634f1d283721f",
|
| 38 |
+
"morphology_sha256": "a8afc0925afec1dd9241528ee6ccfdcb1c321904d876835990592c2573567383",
|
| 39 |
+
"neuron_version": "9.0.2",
|
| 40 |
+
"nseg_policy": "d_lambda",
|
| 41 |
+
"soma_samples_per_ms": 4,
|
| 42 |
+
"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 43 |
+
"synapse_delay_ms": 0.0,
|
| 44 |
+
"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 45 |
+
"teacher": "hay",
|
| 46 |
+
"template_hoc_sha256": "c8c603bf3a9d1f595841b98fdb455d24301d0c4f6edbfc5f3ad67fa6b834f7fb",
|
| 47 |
+
"v_init_mv": -76.0
|
| 48 |
+
},
|
| 49 |
+
"inh_gmax_scale": 1.0,
|
| 50 |
+
"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 51 |
+
"input_routing": {
|
| 52 |
+
"all_traces_identical": true,
|
| 53 |
+
"defensibility_note": "Every source site is connected: each basal/apical source site is placed on the target segment of the same compartment type nearest in normalized arclength, so several sites can share a segment.",
|
| 54 |
+
"duplicated_source_sites_per_sign": {
|
| 55 |
+
"max": 0,
|
| 56 |
+
"mean": 0.0,
|
| 57 |
+
"min": 0
|
| 58 |
+
},
|
| 59 |
+
"morphology_segments": {
|
| 60 |
+
"max": 999,
|
| 61 |
+
"mean": 999.0,
|
| 62 |
+
"min": 999
|
| 63 |
+
},
|
| 64 |
+
"n_traces": 2,
|
| 65 |
+
"policy": "all_sites_by_type_arclength",
|
| 66 |
+
"source_sites_per_sign": {
|
| 67 |
+
"max": 639,
|
| 68 |
+
"mean": 639.0,
|
| 69 |
+
"min": 639
|
| 70 |
+
},
|
| 71 |
+
"status": "recorded",
|
| 72 |
+
"unique_source_sites_per_sign": {
|
| 73 |
+
"max": 639,
|
| 74 |
+
"mean": 639.0,
|
| 75 |
+
"min": 639
|
| 76 |
+
},
|
| 77 |
+
"unused_source_sites_per_sign": {
|
| 78 |
+
"max": 0,
|
| 79 |
+
"mean": 0.0,
|
| 80 |
+
"min": 0
|
| 81 |
+
},
|
| 82 |
+
"used_sites_per_sign": {
|
| 83 |
+
"max": 639,
|
| 84 |
+
"mean": 639.0,
|
| 85 |
+
"min": 639
|
| 86 |
+
}
|
| 87 |
+
},
|
| 88 |
+
"intervention": "inh_dropout",
|
| 89 |
+
"intervention_dose": 0.1,
|
| 90 |
+
"kind": "intervention",
|
| 91 |
+
"morphology_id": "neuronio_hay_cell1",
|
| 92 |
+
"morphology_path": "${AXOBENCH_SOURCE_ROOT}/morphologies/cell1.asc",
|
| 93 |
+
"samples": 2,
|
| 94 |
+
"shard_index": 785,
|
| 95 |
+
"teacher_balance_label": "axobench_ei_balanced"
|
| 96 |
+
}
|
minimal/interventions/inh_dropout_p10/neuronio_hay_cell1_intervention_pair_00786.json
ADDED
|
@@ -0,0 +1,96 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "neuron",
|
| 3 |
+
"coreneuron_gpu": false,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 289.9417175490016,
|
| 6 |
+
"exc_gmax_scale": 1.0,
|
| 7 |
+
"generator": {
|
| 8 |
+
"backend": "neuron",
|
| 9 |
+
"biophysics_hoc_sha256": "dec2a62342faaeeca6436110472f9485e069a434ef993649c6f2820c56cc28f3",
|
| 10 |
+
"code_revision": {
|
| 11 |
+
"commit": "112df5adf80562b47e92903f188426a5db59c0ab",
|
| 12 |
+
"dirty": false
|
| 13 |
+
},
|
| 14 |
+
"data_version": "v2",
|
| 15 |
+
"dt_ms": 0.025,
|
| 16 |
+
"exc_gmax_scale": 1.0,
|
| 17 |
+
"inh_gmax_scale": 1.0,
|
| 18 |
+
"input_routing": "all_sites_by_type",
|
| 19 |
+
"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 20 |
+
"integrator": "fixed_step",
|
| 21 |
+
"mechanism_files": [
|
| 22 |
+
"CaDynamics_E2.mod",
|
| 23 |
+
"Ca_HVA.mod",
|
| 24 |
+
"Ca_LVAst.mod",
|
| 25 |
+
"DetAMPANMDA.mod",
|
| 26 |
+
"DetGABA.mod",
|
| 27 |
+
"Ih.mod",
|
| 28 |
+
"Im.mod",
|
| 29 |
+
"K_Pst.mod",
|
| 30 |
+
"K_Tst.mod",
|
| 31 |
+
"NaTa_t.mod",
|
| 32 |
+
"NaTs2_t.mod",
|
| 33 |
+
"Nap_Et2.mod",
|
| 34 |
+
"SK_E2.mod",
|
| 35 |
+
"SKv3_1.mod"
|
| 36 |
+
],
|
| 37 |
+
"mechanisms_sha256": "f6470b942dc1bbf8ce20e5c561077bfacb294749494f4137c09634f1d283721f",
|
| 38 |
+
"morphology_sha256": "a8afc0925afec1dd9241528ee6ccfdcb1c321904d876835990592c2573567383",
|
| 39 |
+
"neuron_version": "9.0.2",
|
| 40 |
+
"nseg_policy": "d_lambda",
|
| 41 |
+
"soma_samples_per_ms": 4,
|
| 42 |
+
"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 43 |
+
"synapse_delay_ms": 0.0,
|
| 44 |
+
"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 45 |
+
"teacher": "hay",
|
| 46 |
+
"template_hoc_sha256": "c8c603bf3a9d1f595841b98fdb455d24301d0c4f6edbfc5f3ad67fa6b834f7fb",
|
| 47 |
+
"v_init_mv": -76.0
|
| 48 |
+
},
|
| 49 |
+
"inh_gmax_scale": 1.0,
|
| 50 |
+
"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 51 |
+
"input_routing": {
|
| 52 |
+
"all_traces_identical": true,
|
| 53 |
+
"defensibility_note": "Every source site is connected: each basal/apical source site is placed on the target segment of the same compartment type nearest in normalized arclength, so several sites can share a segment.",
|
| 54 |
+
"duplicated_source_sites_per_sign": {
|
| 55 |
+
"max": 0,
|
| 56 |
+
"mean": 0.0,
|
| 57 |
+
"min": 0
|
| 58 |
+
},
|
| 59 |
+
"morphology_segments": {
|
| 60 |
+
"max": 999,
|
| 61 |
+
"mean": 999.0,
|
| 62 |
+
"min": 999
|
| 63 |
+
},
|
| 64 |
+
"n_traces": 2,
|
| 65 |
+
"policy": "all_sites_by_type_arclength",
|
| 66 |
+
"source_sites_per_sign": {
|
| 67 |
+
"max": 639,
|
| 68 |
+
"mean": 639.0,
|
| 69 |
+
"min": 639
|
| 70 |
+
},
|
| 71 |
+
"status": "recorded",
|
| 72 |
+
"unique_source_sites_per_sign": {
|
| 73 |
+
"max": 639,
|
| 74 |
+
"mean": 639.0,
|
| 75 |
+
"min": 639
|
| 76 |
+
},
|
| 77 |
+
"unused_source_sites_per_sign": {
|
| 78 |
+
"max": 0,
|
| 79 |
+
"mean": 0.0,
|
| 80 |
+
"min": 0
|
| 81 |
+
},
|
| 82 |
+
"used_sites_per_sign": {
|
| 83 |
+
"max": 639,
|
| 84 |
+
"mean": 639.0,
|
| 85 |
+
"min": 639
|
| 86 |
+
}
|
| 87 |
+
},
|
| 88 |
+
"intervention": "inh_dropout",
|
| 89 |
+
"intervention_dose": 0.1,
|
| 90 |
+
"kind": "intervention",
|
| 91 |
+
"morphology_id": "neuronio_hay_cell1",
|
| 92 |
+
"morphology_path": "${AXOBENCH_SOURCE_ROOT}/morphologies/cell1.asc",
|
| 93 |
+
"samples": 2,
|
| 94 |
+
"shard_index": 786,
|
| 95 |
+
"teacher_balance_label": "axobench_ei_balanced"
|
| 96 |
+
}
|
minimal/interventions/inh_dropout_p10/neuronio_hay_cell1_intervention_pair_00787.json
ADDED
|
@@ -0,0 +1,96 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "neuron",
|
| 3 |
+
"coreneuron_gpu": false,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 295.8968887339979,
|
| 6 |
+
"exc_gmax_scale": 1.0,
|
| 7 |
+
"generator": {
|
| 8 |
+
"backend": "neuron",
|
| 9 |
+
"biophysics_hoc_sha256": "dec2a62342faaeeca6436110472f9485e069a434ef993649c6f2820c56cc28f3",
|
| 10 |
+
"code_revision": {
|
| 11 |
+
"commit": "112df5adf80562b47e92903f188426a5db59c0ab",
|
| 12 |
+
"dirty": false
|
| 13 |
+
},
|
| 14 |
+
"data_version": "v2",
|
| 15 |
+
"dt_ms": 0.025,
|
| 16 |
+
"exc_gmax_scale": 1.0,
|
| 17 |
+
"inh_gmax_scale": 1.0,
|
| 18 |
+
"input_routing": "all_sites_by_type",
|
| 19 |
+
"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 20 |
+
"integrator": "fixed_step",
|
| 21 |
+
"mechanism_files": [
|
| 22 |
+
"CaDynamics_E2.mod",
|
| 23 |
+
"Ca_HVA.mod",
|
| 24 |
+
"Ca_LVAst.mod",
|
| 25 |
+
"DetAMPANMDA.mod",
|
| 26 |
+
"DetGABA.mod",
|
| 27 |
+
"Ih.mod",
|
| 28 |
+
"Im.mod",
|
| 29 |
+
"K_Pst.mod",
|
| 30 |
+
"K_Tst.mod",
|
| 31 |
+
"NaTa_t.mod",
|
| 32 |
+
"NaTs2_t.mod",
|
| 33 |
+
"Nap_Et2.mod",
|
| 34 |
+
"SK_E2.mod",
|
| 35 |
+
"SKv3_1.mod"
|
| 36 |
+
],
|
| 37 |
+
"mechanisms_sha256": "f6470b942dc1bbf8ce20e5c561077bfacb294749494f4137c09634f1d283721f",
|
| 38 |
+
"morphology_sha256": "a8afc0925afec1dd9241528ee6ccfdcb1c321904d876835990592c2573567383",
|
| 39 |
+
"neuron_version": "9.0.2",
|
| 40 |
+
"nseg_policy": "d_lambda",
|
| 41 |
+
"soma_samples_per_ms": 4,
|
| 42 |
+
"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 43 |
+
"synapse_delay_ms": 0.0,
|
| 44 |
+
"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 45 |
+
"teacher": "hay",
|
| 46 |
+
"template_hoc_sha256": "c8c603bf3a9d1f595841b98fdb455d24301d0c4f6edbfc5f3ad67fa6b834f7fb",
|
| 47 |
+
"v_init_mv": -76.0
|
| 48 |
+
},
|
| 49 |
+
"inh_gmax_scale": 1.0,
|
| 50 |
+
"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 51 |
+
"input_routing": {
|
| 52 |
+
"all_traces_identical": true,
|
| 53 |
+
"defensibility_note": "Every source site is connected: each basal/apical source site is placed on the target segment of the same compartment type nearest in normalized arclength, so several sites can share a segment.",
|
| 54 |
+
"duplicated_source_sites_per_sign": {
|
| 55 |
+
"max": 0,
|
| 56 |
+
"mean": 0.0,
|
| 57 |
+
"min": 0
|
| 58 |
+
},
|
| 59 |
+
"morphology_segments": {
|
| 60 |
+
"max": 999,
|
| 61 |
+
"mean": 999.0,
|
| 62 |
+
"min": 999
|
| 63 |
+
},
|
| 64 |
+
"n_traces": 2,
|
| 65 |
+
"policy": "all_sites_by_type_arclength",
|
| 66 |
+
"source_sites_per_sign": {
|
| 67 |
+
"max": 639,
|
| 68 |
+
"mean": 639.0,
|
| 69 |
+
"min": 639
|
| 70 |
+
},
|
| 71 |
+
"status": "recorded",
|
| 72 |
+
"unique_source_sites_per_sign": {
|
| 73 |
+
"max": 639,
|
| 74 |
+
"mean": 639.0,
|
| 75 |
+
"min": 639
|
| 76 |
+
},
|
| 77 |
+
"unused_source_sites_per_sign": {
|
| 78 |
+
"max": 0,
|
| 79 |
+
"mean": 0.0,
|
| 80 |
+
"min": 0
|
| 81 |
+
},
|
| 82 |
+
"used_sites_per_sign": {
|
| 83 |
+
"max": 639,
|
| 84 |
+
"mean": 639.0,
|
| 85 |
+
"min": 639
|
| 86 |
+
}
|
| 87 |
+
},
|
| 88 |
+
"intervention": "inh_dropout",
|
| 89 |
+
"intervention_dose": 0.1,
|
| 90 |
+
"kind": "intervention",
|
| 91 |
+
"morphology_id": "neuronio_hay_cell1",
|
| 92 |
+
"morphology_path": "${AXOBENCH_SOURCE_ROOT}/morphologies/cell1.asc",
|
| 93 |
+
"samples": 2,
|
| 94 |
+
"shard_index": 787,
|
| 95 |
+
"teacher_balance_label": "axobench_ei_balanced"
|
| 96 |
+
}
|
minimal/interventions/inh_dropout_p10/neuronio_hay_cell1_intervention_pair_00788.json
ADDED
|
@@ -0,0 +1,96 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "neuron",
|
| 3 |
+
"coreneuron_gpu": false,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 290.6863887640029,
|
| 6 |
+
"exc_gmax_scale": 1.0,
|
| 7 |
+
"generator": {
|
| 8 |
+
"backend": "neuron",
|
| 9 |
+
"biophysics_hoc_sha256": "dec2a62342faaeeca6436110472f9485e069a434ef993649c6f2820c56cc28f3",
|
| 10 |
+
"code_revision": {
|
| 11 |
+
"commit": "112df5adf80562b47e92903f188426a5db59c0ab",
|
| 12 |
+
"dirty": false
|
| 13 |
+
},
|
| 14 |
+
"data_version": "v2",
|
| 15 |
+
"dt_ms": 0.025,
|
| 16 |
+
"exc_gmax_scale": 1.0,
|
| 17 |
+
"inh_gmax_scale": 1.0,
|
| 18 |
+
"input_routing": "all_sites_by_type",
|
| 19 |
+
"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 20 |
+
"integrator": "fixed_step",
|
| 21 |
+
"mechanism_files": [
|
| 22 |
+
"CaDynamics_E2.mod",
|
| 23 |
+
"Ca_HVA.mod",
|
| 24 |
+
"Ca_LVAst.mod",
|
| 25 |
+
"DetAMPANMDA.mod",
|
| 26 |
+
"DetGABA.mod",
|
| 27 |
+
"Ih.mod",
|
| 28 |
+
"Im.mod",
|
| 29 |
+
"K_Pst.mod",
|
| 30 |
+
"K_Tst.mod",
|
| 31 |
+
"NaTa_t.mod",
|
| 32 |
+
"NaTs2_t.mod",
|
| 33 |
+
"Nap_Et2.mod",
|
| 34 |
+
"SK_E2.mod",
|
| 35 |
+
"SKv3_1.mod"
|
| 36 |
+
],
|
| 37 |
+
"mechanisms_sha256": "f6470b942dc1bbf8ce20e5c561077bfacb294749494f4137c09634f1d283721f",
|
| 38 |
+
"morphology_sha256": "a8afc0925afec1dd9241528ee6ccfdcb1c321904d876835990592c2573567383",
|
| 39 |
+
"neuron_version": "9.0.2",
|
| 40 |
+
"nseg_policy": "d_lambda",
|
| 41 |
+
"soma_samples_per_ms": 4,
|
| 42 |
+
"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 43 |
+
"synapse_delay_ms": 0.0,
|
| 44 |
+
"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 45 |
+
"teacher": "hay",
|
| 46 |
+
"template_hoc_sha256": "c8c603bf3a9d1f595841b98fdb455d24301d0c4f6edbfc5f3ad67fa6b834f7fb",
|
| 47 |
+
"v_init_mv": -76.0
|
| 48 |
+
},
|
| 49 |
+
"inh_gmax_scale": 1.0,
|
| 50 |
+
"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 51 |
+
"input_routing": {
|
| 52 |
+
"all_traces_identical": true,
|
| 53 |
+
"defensibility_note": "Every source site is connected: each basal/apical source site is placed on the target segment of the same compartment type nearest in normalized arclength, so several sites can share a segment.",
|
| 54 |
+
"duplicated_source_sites_per_sign": {
|
| 55 |
+
"max": 0,
|
| 56 |
+
"mean": 0.0,
|
| 57 |
+
"min": 0
|
| 58 |
+
},
|
| 59 |
+
"morphology_segments": {
|
| 60 |
+
"max": 999,
|
| 61 |
+
"mean": 999.0,
|
| 62 |
+
"min": 999
|
| 63 |
+
},
|
| 64 |
+
"n_traces": 2,
|
| 65 |
+
"policy": "all_sites_by_type_arclength",
|
| 66 |
+
"source_sites_per_sign": {
|
| 67 |
+
"max": 639,
|
| 68 |
+
"mean": 639.0,
|
| 69 |
+
"min": 639
|
| 70 |
+
},
|
| 71 |
+
"status": "recorded",
|
| 72 |
+
"unique_source_sites_per_sign": {
|
| 73 |
+
"max": 639,
|
| 74 |
+
"mean": 639.0,
|
| 75 |
+
"min": 639
|
| 76 |
+
},
|
| 77 |
+
"unused_source_sites_per_sign": {
|
| 78 |
+
"max": 0,
|
| 79 |
+
"mean": 0.0,
|
| 80 |
+
"min": 0
|
| 81 |
+
},
|
| 82 |
+
"used_sites_per_sign": {
|
| 83 |
+
"max": 639,
|
| 84 |
+
"mean": 639.0,
|
| 85 |
+
"min": 639
|
| 86 |
+
}
|
| 87 |
+
},
|
| 88 |
+
"intervention": "inh_dropout",
|
| 89 |
+
"intervention_dose": 0.1,
|
| 90 |
+
"kind": "intervention",
|
| 91 |
+
"morphology_id": "neuronio_hay_cell1",
|
| 92 |
+
"morphology_path": "${AXOBENCH_SOURCE_ROOT}/morphologies/cell1.asc",
|
| 93 |
+
"samples": 2,
|
| 94 |
+
"shard_index": 788,
|
| 95 |
+
"teacher_balance_label": "axobench_ei_balanced"
|
| 96 |
+
}
|
minimal/interventions/inh_dropout_p10/neuronio_hay_cell1_intervention_pair_00789.json
ADDED
|
@@ -0,0 +1,96 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "neuron",
|
| 3 |
+
"coreneuron_gpu": false,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 289.4019654950025,
|
| 6 |
+
"exc_gmax_scale": 1.0,
|
| 7 |
+
"generator": {
|
| 8 |
+
"backend": "neuron",
|
| 9 |
+
"biophysics_hoc_sha256": "dec2a62342faaeeca6436110472f9485e069a434ef993649c6f2820c56cc28f3",
|
| 10 |
+
"code_revision": {
|
| 11 |
+
"commit": "112df5adf80562b47e92903f188426a5db59c0ab",
|
| 12 |
+
"dirty": false
|
| 13 |
+
},
|
| 14 |
+
"data_version": "v2",
|
| 15 |
+
"dt_ms": 0.025,
|
| 16 |
+
"exc_gmax_scale": 1.0,
|
| 17 |
+
"inh_gmax_scale": 1.0,
|
| 18 |
+
"input_routing": "all_sites_by_type",
|
| 19 |
+
"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 20 |
+
"integrator": "fixed_step",
|
| 21 |
+
"mechanism_files": [
|
| 22 |
+
"CaDynamics_E2.mod",
|
| 23 |
+
"Ca_HVA.mod",
|
| 24 |
+
"Ca_LVAst.mod",
|
| 25 |
+
"DetAMPANMDA.mod",
|
| 26 |
+
"DetGABA.mod",
|
| 27 |
+
"Ih.mod",
|
| 28 |
+
"Im.mod",
|
| 29 |
+
"K_Pst.mod",
|
| 30 |
+
"K_Tst.mod",
|
| 31 |
+
"NaTa_t.mod",
|
| 32 |
+
"NaTs2_t.mod",
|
| 33 |
+
"Nap_Et2.mod",
|
| 34 |
+
"SK_E2.mod",
|
| 35 |
+
"SKv3_1.mod"
|
| 36 |
+
],
|
| 37 |
+
"mechanisms_sha256": "f6470b942dc1bbf8ce20e5c561077bfacb294749494f4137c09634f1d283721f",
|
| 38 |
+
"morphology_sha256": "a8afc0925afec1dd9241528ee6ccfdcb1c321904d876835990592c2573567383",
|
| 39 |
+
"neuron_version": "9.0.2",
|
| 40 |
+
"nseg_policy": "d_lambda",
|
| 41 |
+
"soma_samples_per_ms": 4,
|
| 42 |
+
"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 43 |
+
"synapse_delay_ms": 0.0,
|
| 44 |
+
"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 45 |
+
"teacher": "hay",
|
| 46 |
+
"template_hoc_sha256": "c8c603bf3a9d1f595841b98fdb455d24301d0c4f6edbfc5f3ad67fa6b834f7fb",
|
| 47 |
+
"v_init_mv": -76.0
|
| 48 |
+
},
|
| 49 |
+
"inh_gmax_scale": 1.0,
|
| 50 |
+
"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 51 |
+
"input_routing": {
|
| 52 |
+
"all_traces_identical": true,
|
| 53 |
+
"defensibility_note": "Every source site is connected: each basal/apical source site is placed on the target segment of the same compartment type nearest in normalized arclength, so several sites can share a segment.",
|
| 54 |
+
"duplicated_source_sites_per_sign": {
|
| 55 |
+
"max": 0,
|
| 56 |
+
"mean": 0.0,
|
| 57 |
+
"min": 0
|
| 58 |
+
},
|
| 59 |
+
"morphology_segments": {
|
| 60 |
+
"max": 999,
|
| 61 |
+
"mean": 999.0,
|
| 62 |
+
"min": 999
|
| 63 |
+
},
|
| 64 |
+
"n_traces": 2,
|
| 65 |
+
"policy": "all_sites_by_type_arclength",
|
| 66 |
+
"source_sites_per_sign": {
|
| 67 |
+
"max": 639,
|
| 68 |
+
"mean": 639.0,
|
| 69 |
+
"min": 639
|
| 70 |
+
},
|
| 71 |
+
"status": "recorded",
|
| 72 |
+
"unique_source_sites_per_sign": {
|
| 73 |
+
"max": 639,
|
| 74 |
+
"mean": 639.0,
|
| 75 |
+
"min": 639
|
| 76 |
+
},
|
| 77 |
+
"unused_source_sites_per_sign": {
|
| 78 |
+
"max": 0,
|
| 79 |
+
"mean": 0.0,
|
| 80 |
+
"min": 0
|
| 81 |
+
},
|
| 82 |
+
"used_sites_per_sign": {
|
| 83 |
+
"max": 639,
|
| 84 |
+
"mean": 639.0,
|
| 85 |
+
"min": 639
|
| 86 |
+
}
|
| 87 |
+
},
|
| 88 |
+
"intervention": "inh_dropout",
|
| 89 |
+
"intervention_dose": 0.1,
|
| 90 |
+
"kind": "intervention",
|
| 91 |
+
"morphology_id": "neuronio_hay_cell1",
|
| 92 |
+
"morphology_path": "${AXOBENCH_SOURCE_ROOT}/morphologies/cell1.asc",
|
| 93 |
+
"samples": 2,
|
| 94 |
+
"shard_index": 789,
|
| 95 |
+
"teacher_balance_label": "axobench_ei_balanced"
|
| 96 |
+
}
|
minimal/interventions/inh_dropout_p10/neuronio_hay_cell1_intervention_pair_00790.json
ADDED
|
@@ -0,0 +1,96 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "neuron",
|
| 3 |
+
"coreneuron_gpu": false,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 290.6804345320015,
|
| 6 |
+
"exc_gmax_scale": 1.0,
|
| 7 |
+
"generator": {
|
| 8 |
+
"backend": "neuron",
|
| 9 |
+
"biophysics_hoc_sha256": "dec2a62342faaeeca6436110472f9485e069a434ef993649c6f2820c56cc28f3",
|
| 10 |
+
"code_revision": {
|
| 11 |
+
"commit": "112df5adf80562b47e92903f188426a5db59c0ab",
|
| 12 |
+
"dirty": false
|
| 13 |
+
},
|
| 14 |
+
"data_version": "v2",
|
| 15 |
+
"dt_ms": 0.025,
|
| 16 |
+
"exc_gmax_scale": 1.0,
|
| 17 |
+
"inh_gmax_scale": 1.0,
|
| 18 |
+
"input_routing": "all_sites_by_type",
|
| 19 |
+
"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 20 |
+
"integrator": "fixed_step",
|
| 21 |
+
"mechanism_files": [
|
| 22 |
+
"CaDynamics_E2.mod",
|
| 23 |
+
"Ca_HVA.mod",
|
| 24 |
+
"Ca_LVAst.mod",
|
| 25 |
+
"DetAMPANMDA.mod",
|
| 26 |
+
"DetGABA.mod",
|
| 27 |
+
"Ih.mod",
|
| 28 |
+
"Im.mod",
|
| 29 |
+
"K_Pst.mod",
|
| 30 |
+
"K_Tst.mod",
|
| 31 |
+
"NaTa_t.mod",
|
| 32 |
+
"NaTs2_t.mod",
|
| 33 |
+
"Nap_Et2.mod",
|
| 34 |
+
"SK_E2.mod",
|
| 35 |
+
"SKv3_1.mod"
|
| 36 |
+
],
|
| 37 |
+
"mechanisms_sha256": "f6470b942dc1bbf8ce20e5c561077bfacb294749494f4137c09634f1d283721f",
|
| 38 |
+
"morphology_sha256": "a8afc0925afec1dd9241528ee6ccfdcb1c321904d876835990592c2573567383",
|
| 39 |
+
"neuron_version": "9.0.2",
|
| 40 |
+
"nseg_policy": "d_lambda",
|
| 41 |
+
"soma_samples_per_ms": 4,
|
| 42 |
+
"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 43 |
+
"synapse_delay_ms": 0.0,
|
| 44 |
+
"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 45 |
+
"teacher": "hay",
|
| 46 |
+
"template_hoc_sha256": "c8c603bf3a9d1f595841b98fdb455d24301d0c4f6edbfc5f3ad67fa6b834f7fb",
|
| 47 |
+
"v_init_mv": -76.0
|
| 48 |
+
},
|
| 49 |
+
"inh_gmax_scale": 1.0,
|
| 50 |
+
"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 51 |
+
"input_routing": {
|
| 52 |
+
"all_traces_identical": true,
|
| 53 |
+
"defensibility_note": "Every source site is connected: each basal/apical source site is placed on the target segment of the same compartment type nearest in normalized arclength, so several sites can share a segment.",
|
| 54 |
+
"duplicated_source_sites_per_sign": {
|
| 55 |
+
"max": 0,
|
| 56 |
+
"mean": 0.0,
|
| 57 |
+
"min": 0
|
| 58 |
+
},
|
| 59 |
+
"morphology_segments": {
|
| 60 |
+
"max": 999,
|
| 61 |
+
"mean": 999.0,
|
| 62 |
+
"min": 999
|
| 63 |
+
},
|
| 64 |
+
"n_traces": 2,
|
| 65 |
+
"policy": "all_sites_by_type_arclength",
|
| 66 |
+
"source_sites_per_sign": {
|
| 67 |
+
"max": 639,
|
| 68 |
+
"mean": 639.0,
|
| 69 |
+
"min": 639
|
| 70 |
+
},
|
| 71 |
+
"status": "recorded",
|
| 72 |
+
"unique_source_sites_per_sign": {
|
| 73 |
+
"max": 639,
|
| 74 |
+
"mean": 639.0,
|
| 75 |
+
"min": 639
|
| 76 |
+
},
|
| 77 |
+
"unused_source_sites_per_sign": {
|
| 78 |
+
"max": 0,
|
| 79 |
+
"mean": 0.0,
|
| 80 |
+
"min": 0
|
| 81 |
+
},
|
| 82 |
+
"used_sites_per_sign": {
|
| 83 |
+
"max": 639,
|
| 84 |
+
"mean": 639.0,
|
| 85 |
+
"min": 639
|
| 86 |
+
}
|
| 87 |
+
},
|
| 88 |
+
"intervention": "inh_dropout",
|
| 89 |
+
"intervention_dose": 0.1,
|
| 90 |
+
"kind": "intervention",
|
| 91 |
+
"morphology_id": "neuronio_hay_cell1",
|
| 92 |
+
"morphology_path": "${AXOBENCH_SOURCE_ROOT}/morphologies/cell1.asc",
|
| 93 |
+
"samples": 2,
|
| 94 |
+
"shard_index": 790,
|
| 95 |
+
"teacher_balance_label": "axobench_ei_balanced"
|
| 96 |
+
}
|
minimal/interventions/inh_dropout_p10/neuronio_hay_cell1_intervention_pair_00791.json
ADDED
|
@@ -0,0 +1,96 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "neuron",
|
| 3 |
+
"coreneuron_gpu": false,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 292.08396637900296,
|
| 6 |
+
"exc_gmax_scale": 1.0,
|
| 7 |
+
"generator": {
|
| 8 |
+
"backend": "neuron",
|
| 9 |
+
"biophysics_hoc_sha256": "dec2a62342faaeeca6436110472f9485e069a434ef993649c6f2820c56cc28f3",
|
| 10 |
+
"code_revision": {
|
| 11 |
+
"commit": "112df5adf80562b47e92903f188426a5db59c0ab",
|
| 12 |
+
"dirty": false
|
| 13 |
+
},
|
| 14 |
+
"data_version": "v2",
|
| 15 |
+
"dt_ms": 0.025,
|
| 16 |
+
"exc_gmax_scale": 1.0,
|
| 17 |
+
"inh_gmax_scale": 1.0,
|
| 18 |
+
"input_routing": "all_sites_by_type",
|
| 19 |
+
"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 20 |
+
"integrator": "fixed_step",
|
| 21 |
+
"mechanism_files": [
|
| 22 |
+
"CaDynamics_E2.mod",
|
| 23 |
+
"Ca_HVA.mod",
|
| 24 |
+
"Ca_LVAst.mod",
|
| 25 |
+
"DetAMPANMDA.mod",
|
| 26 |
+
"DetGABA.mod",
|
| 27 |
+
"Ih.mod",
|
| 28 |
+
"Im.mod",
|
| 29 |
+
"K_Pst.mod",
|
| 30 |
+
"K_Tst.mod",
|
| 31 |
+
"NaTa_t.mod",
|
| 32 |
+
"NaTs2_t.mod",
|
| 33 |
+
"Nap_Et2.mod",
|
| 34 |
+
"SK_E2.mod",
|
| 35 |
+
"SKv3_1.mod"
|
| 36 |
+
],
|
| 37 |
+
"mechanisms_sha256": "f6470b942dc1bbf8ce20e5c561077bfacb294749494f4137c09634f1d283721f",
|
| 38 |
+
"morphology_sha256": "a8afc0925afec1dd9241528ee6ccfdcb1c321904d876835990592c2573567383",
|
| 39 |
+
"neuron_version": "9.0.2",
|
| 40 |
+
"nseg_policy": "d_lambda",
|
| 41 |
+
"soma_samples_per_ms": 4,
|
| 42 |
+
"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 43 |
+
"synapse_delay_ms": 0.0,
|
| 44 |
+
"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 45 |
+
"teacher": "hay",
|
| 46 |
+
"template_hoc_sha256": "c8c603bf3a9d1f595841b98fdb455d24301d0c4f6edbfc5f3ad67fa6b834f7fb",
|
| 47 |
+
"v_init_mv": -76.0
|
| 48 |
+
},
|
| 49 |
+
"inh_gmax_scale": 1.0,
|
| 50 |
+
"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 51 |
+
"input_routing": {
|
| 52 |
+
"all_traces_identical": true,
|
| 53 |
+
"defensibility_note": "Every source site is connected: each basal/apical source site is placed on the target segment of the same compartment type nearest in normalized arclength, so several sites can share a segment.",
|
| 54 |
+
"duplicated_source_sites_per_sign": {
|
| 55 |
+
"max": 0,
|
| 56 |
+
"mean": 0.0,
|
| 57 |
+
"min": 0
|
| 58 |
+
},
|
| 59 |
+
"morphology_segments": {
|
| 60 |
+
"max": 999,
|
| 61 |
+
"mean": 999.0,
|
| 62 |
+
"min": 999
|
| 63 |
+
},
|
| 64 |
+
"n_traces": 2,
|
| 65 |
+
"policy": "all_sites_by_type_arclength",
|
| 66 |
+
"source_sites_per_sign": {
|
| 67 |
+
"max": 639,
|
| 68 |
+
"mean": 639.0,
|
| 69 |
+
"min": 639
|
| 70 |
+
},
|
| 71 |
+
"status": "recorded",
|
| 72 |
+
"unique_source_sites_per_sign": {
|
| 73 |
+
"max": 639,
|
| 74 |
+
"mean": 639.0,
|
| 75 |
+
"min": 639
|
| 76 |
+
},
|
| 77 |
+
"unused_source_sites_per_sign": {
|
| 78 |
+
"max": 0,
|
| 79 |
+
"mean": 0.0,
|
| 80 |
+
"min": 0
|
| 81 |
+
},
|
| 82 |
+
"used_sites_per_sign": {
|
| 83 |
+
"max": 639,
|
| 84 |
+
"mean": 639.0,
|
| 85 |
+
"min": 639
|
| 86 |
+
}
|
| 87 |
+
},
|
| 88 |
+
"intervention": "inh_dropout",
|
| 89 |
+
"intervention_dose": 0.1,
|
| 90 |
+
"kind": "intervention",
|
| 91 |
+
"morphology_id": "neuronio_hay_cell1",
|
| 92 |
+
"morphology_path": "${AXOBENCH_SOURCE_ROOT}/morphologies/cell1.asc",
|
| 93 |
+
"samples": 2,
|
| 94 |
+
"shard_index": 791,
|
| 95 |
+
"teacher_balance_label": "axobench_ei_balanced"
|
| 96 |
+
}
|
minimal/interventions/inh_dropout_p10/neuronio_hay_cell1_intervention_pair_00792.json
ADDED
|
@@ -0,0 +1,96 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "neuron",
|
| 3 |
+
"coreneuron_gpu": false,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 291.7071999239997,
|
| 6 |
+
"exc_gmax_scale": 1.0,
|
| 7 |
+
"generator": {
|
| 8 |
+
"backend": "neuron",
|
| 9 |
+
"biophysics_hoc_sha256": "dec2a62342faaeeca6436110472f9485e069a434ef993649c6f2820c56cc28f3",
|
| 10 |
+
"code_revision": {
|
| 11 |
+
"commit": "112df5adf80562b47e92903f188426a5db59c0ab",
|
| 12 |
+
"dirty": false
|
| 13 |
+
},
|
| 14 |
+
"data_version": "v2",
|
| 15 |
+
"dt_ms": 0.025,
|
| 16 |
+
"exc_gmax_scale": 1.0,
|
| 17 |
+
"inh_gmax_scale": 1.0,
|
| 18 |
+
"input_routing": "all_sites_by_type",
|
| 19 |
+
"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 20 |
+
"integrator": "fixed_step",
|
| 21 |
+
"mechanism_files": [
|
| 22 |
+
"CaDynamics_E2.mod",
|
| 23 |
+
"Ca_HVA.mod",
|
| 24 |
+
"Ca_LVAst.mod",
|
| 25 |
+
"DetAMPANMDA.mod",
|
| 26 |
+
"DetGABA.mod",
|
| 27 |
+
"Ih.mod",
|
| 28 |
+
"Im.mod",
|
| 29 |
+
"K_Pst.mod",
|
| 30 |
+
"K_Tst.mod",
|
| 31 |
+
"NaTa_t.mod",
|
| 32 |
+
"NaTs2_t.mod",
|
| 33 |
+
"Nap_Et2.mod",
|
| 34 |
+
"SK_E2.mod",
|
| 35 |
+
"SKv3_1.mod"
|
| 36 |
+
],
|
| 37 |
+
"mechanisms_sha256": "f6470b942dc1bbf8ce20e5c561077bfacb294749494f4137c09634f1d283721f",
|
| 38 |
+
"morphology_sha256": "a8afc0925afec1dd9241528ee6ccfdcb1c321904d876835990592c2573567383",
|
| 39 |
+
"neuron_version": "9.0.2",
|
| 40 |
+
"nseg_policy": "d_lambda",
|
| 41 |
+
"soma_samples_per_ms": 4,
|
| 42 |
+
"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 43 |
+
"synapse_delay_ms": 0.0,
|
| 44 |
+
"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 45 |
+
"teacher": "hay",
|
| 46 |
+
"template_hoc_sha256": "c8c603bf3a9d1f595841b98fdb455d24301d0c4f6edbfc5f3ad67fa6b834f7fb",
|
| 47 |
+
"v_init_mv": -76.0
|
| 48 |
+
},
|
| 49 |
+
"inh_gmax_scale": 1.0,
|
| 50 |
+
"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 51 |
+
"input_routing": {
|
| 52 |
+
"all_traces_identical": true,
|
| 53 |
+
"defensibility_note": "Every source site is connected: each basal/apical source site is placed on the target segment of the same compartment type nearest in normalized arclength, so several sites can share a segment.",
|
| 54 |
+
"duplicated_source_sites_per_sign": {
|
| 55 |
+
"max": 0,
|
| 56 |
+
"mean": 0.0,
|
| 57 |
+
"min": 0
|
| 58 |
+
},
|
| 59 |
+
"morphology_segments": {
|
| 60 |
+
"max": 999,
|
| 61 |
+
"mean": 999.0,
|
| 62 |
+
"min": 999
|
| 63 |
+
},
|
| 64 |
+
"n_traces": 2,
|
| 65 |
+
"policy": "all_sites_by_type_arclength",
|
| 66 |
+
"source_sites_per_sign": {
|
| 67 |
+
"max": 639,
|
| 68 |
+
"mean": 639.0,
|
| 69 |
+
"min": 639
|
| 70 |
+
},
|
| 71 |
+
"status": "recorded",
|
| 72 |
+
"unique_source_sites_per_sign": {
|
| 73 |
+
"max": 639,
|
| 74 |
+
"mean": 639.0,
|
| 75 |
+
"min": 639
|
| 76 |
+
},
|
| 77 |
+
"unused_source_sites_per_sign": {
|
| 78 |
+
"max": 0,
|
| 79 |
+
"mean": 0.0,
|
| 80 |
+
"min": 0
|
| 81 |
+
},
|
| 82 |
+
"used_sites_per_sign": {
|
| 83 |
+
"max": 639,
|
| 84 |
+
"mean": 639.0,
|
| 85 |
+
"min": 639
|
| 86 |
+
}
|
| 87 |
+
},
|
| 88 |
+
"intervention": "inh_dropout",
|
| 89 |
+
"intervention_dose": 0.1,
|
| 90 |
+
"kind": "intervention",
|
| 91 |
+
"morphology_id": "neuronio_hay_cell1",
|
| 92 |
+
"morphology_path": "${AXOBENCH_SOURCE_ROOT}/morphologies/cell1.asc",
|
| 93 |
+
"samples": 2,
|
| 94 |
+
"shard_index": 792,
|
| 95 |
+
"teacher_balance_label": "axobench_ei_balanced"
|
| 96 |
+
}
|
minimal/interventions/inh_dropout_p10/neuronio_hay_cell1_intervention_pair_00793.json
ADDED
|
@@ -0,0 +1,96 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "neuron",
|
| 3 |
+
"coreneuron_gpu": false,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 290.93671346500196,
|
| 6 |
+
"exc_gmax_scale": 1.0,
|
| 7 |
+
"generator": {
|
| 8 |
+
"backend": "neuron",
|
| 9 |
+
"biophysics_hoc_sha256": "dec2a62342faaeeca6436110472f9485e069a434ef993649c6f2820c56cc28f3",
|
| 10 |
+
"code_revision": {
|
| 11 |
+
"commit": "112df5adf80562b47e92903f188426a5db59c0ab",
|
| 12 |
+
"dirty": false
|
| 13 |
+
},
|
| 14 |
+
"data_version": "v2",
|
| 15 |
+
"dt_ms": 0.025,
|
| 16 |
+
"exc_gmax_scale": 1.0,
|
| 17 |
+
"inh_gmax_scale": 1.0,
|
| 18 |
+
"input_routing": "all_sites_by_type",
|
| 19 |
+
"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 20 |
+
"integrator": "fixed_step",
|
| 21 |
+
"mechanism_files": [
|
| 22 |
+
"CaDynamics_E2.mod",
|
| 23 |
+
"Ca_HVA.mod",
|
| 24 |
+
"Ca_LVAst.mod",
|
| 25 |
+
"DetAMPANMDA.mod",
|
| 26 |
+
"DetGABA.mod",
|
| 27 |
+
"Ih.mod",
|
| 28 |
+
"Im.mod",
|
| 29 |
+
"K_Pst.mod",
|
| 30 |
+
"K_Tst.mod",
|
| 31 |
+
"NaTa_t.mod",
|
| 32 |
+
"NaTs2_t.mod",
|
| 33 |
+
"Nap_Et2.mod",
|
| 34 |
+
"SK_E2.mod",
|
| 35 |
+
"SKv3_1.mod"
|
| 36 |
+
],
|
| 37 |
+
"mechanisms_sha256": "f6470b942dc1bbf8ce20e5c561077bfacb294749494f4137c09634f1d283721f",
|
| 38 |
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"morphology_sha256": "a8afc0925afec1dd9241528ee6ccfdcb1c321904d876835990592c2573567383",
|
| 39 |
+
"neuron_version": "9.0.2",
|
| 40 |
+
"nseg_policy": "d_lambda",
|
| 41 |
+
"soma_samples_per_ms": 4,
|
| 42 |
+
"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 43 |
+
"synapse_delay_ms": 0.0,
|
| 44 |
+
"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 45 |
+
"teacher": "hay",
|
| 46 |
+
"template_hoc_sha256": "c8c603bf3a9d1f595841b98fdb455d24301d0c4f6edbfc5f3ad67fa6b834f7fb",
|
| 47 |
+
"v_init_mv": -76.0
|
| 48 |
+
},
|
| 49 |
+
"inh_gmax_scale": 1.0,
|
| 50 |
+
"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 51 |
+
"input_routing": {
|
| 52 |
+
"all_traces_identical": true,
|
| 53 |
+
"defensibility_note": "Every source site is connected: each basal/apical source site is placed on the target segment of the same compartment type nearest in normalized arclength, so several sites can share a segment.",
|
| 54 |
+
"duplicated_source_sites_per_sign": {
|
| 55 |
+
"max": 0,
|
| 56 |
+
"mean": 0.0,
|
| 57 |
+
"min": 0
|
| 58 |
+
},
|
| 59 |
+
"morphology_segments": {
|
| 60 |
+
"max": 999,
|
| 61 |
+
"mean": 999.0,
|
| 62 |
+
"min": 999
|
| 63 |
+
},
|
| 64 |
+
"n_traces": 2,
|
| 65 |
+
"policy": "all_sites_by_type_arclength",
|
| 66 |
+
"source_sites_per_sign": {
|
| 67 |
+
"max": 639,
|
| 68 |
+
"mean": 639.0,
|
| 69 |
+
"min": 639
|
| 70 |
+
},
|
| 71 |
+
"status": "recorded",
|
| 72 |
+
"unique_source_sites_per_sign": {
|
| 73 |
+
"max": 639,
|
| 74 |
+
"mean": 639.0,
|
| 75 |
+
"min": 639
|
| 76 |
+
},
|
| 77 |
+
"unused_source_sites_per_sign": {
|
| 78 |
+
"max": 0,
|
| 79 |
+
"mean": 0.0,
|
| 80 |
+
"min": 0
|
| 81 |
+
},
|
| 82 |
+
"used_sites_per_sign": {
|
| 83 |
+
"max": 639,
|
| 84 |
+
"mean": 639.0,
|
| 85 |
+
"min": 639
|
| 86 |
+
}
|
| 87 |
+
},
|
| 88 |
+
"intervention": "inh_dropout",
|
| 89 |
+
"intervention_dose": 0.1,
|
| 90 |
+
"kind": "intervention",
|
| 91 |
+
"morphology_id": "neuronio_hay_cell1",
|
| 92 |
+
"morphology_path": "${AXOBENCH_SOURCE_ROOT}/morphologies/cell1.asc",
|
| 93 |
+
"samples": 2,
|
| 94 |
+
"shard_index": 793,
|
| 95 |
+
"teacher_balance_label": "axobench_ei_balanced"
|
| 96 |
+
}
|
minimal/interventions/inh_dropout_p10/neuronio_hay_cell1_intervention_pair_00794.json
ADDED
|
@@ -0,0 +1,96 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "neuron",
|
| 3 |
+
"coreneuron_gpu": false,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 289.40919605100135,
|
| 6 |
+
"exc_gmax_scale": 1.0,
|
| 7 |
+
"generator": {
|
| 8 |
+
"backend": "neuron",
|
| 9 |
+
"biophysics_hoc_sha256": "dec2a62342faaeeca6436110472f9485e069a434ef993649c6f2820c56cc28f3",
|
| 10 |
+
"code_revision": {
|
| 11 |
+
"commit": "112df5adf80562b47e92903f188426a5db59c0ab",
|
| 12 |
+
"dirty": false
|
| 13 |
+
},
|
| 14 |
+
"data_version": "v2",
|
| 15 |
+
"dt_ms": 0.025,
|
| 16 |
+
"exc_gmax_scale": 1.0,
|
| 17 |
+
"inh_gmax_scale": 1.0,
|
| 18 |
+
"input_routing": "all_sites_by_type",
|
| 19 |
+
"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 20 |
+
"integrator": "fixed_step",
|
| 21 |
+
"mechanism_files": [
|
| 22 |
+
"CaDynamics_E2.mod",
|
| 23 |
+
"Ca_HVA.mod",
|
| 24 |
+
"Ca_LVAst.mod",
|
| 25 |
+
"DetAMPANMDA.mod",
|
| 26 |
+
"DetGABA.mod",
|
| 27 |
+
"Ih.mod",
|
| 28 |
+
"Im.mod",
|
| 29 |
+
"K_Pst.mod",
|
| 30 |
+
"K_Tst.mod",
|
| 31 |
+
"NaTa_t.mod",
|
| 32 |
+
"NaTs2_t.mod",
|
| 33 |
+
"Nap_Et2.mod",
|
| 34 |
+
"SK_E2.mod",
|
| 35 |
+
"SKv3_1.mod"
|
| 36 |
+
],
|
| 37 |
+
"mechanisms_sha256": "f6470b942dc1bbf8ce20e5c561077bfacb294749494f4137c09634f1d283721f",
|
| 38 |
+
"morphology_sha256": "a8afc0925afec1dd9241528ee6ccfdcb1c321904d876835990592c2573567383",
|
| 39 |
+
"neuron_version": "9.0.2",
|
| 40 |
+
"nseg_policy": "d_lambda",
|
| 41 |
+
"soma_samples_per_ms": 4,
|
| 42 |
+
"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 43 |
+
"synapse_delay_ms": 0.0,
|
| 44 |
+
"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 45 |
+
"teacher": "hay",
|
| 46 |
+
"template_hoc_sha256": "c8c603bf3a9d1f595841b98fdb455d24301d0c4f6edbfc5f3ad67fa6b834f7fb",
|
| 47 |
+
"v_init_mv": -76.0
|
| 48 |
+
},
|
| 49 |
+
"inh_gmax_scale": 1.0,
|
| 50 |
+
"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 51 |
+
"input_routing": {
|
| 52 |
+
"all_traces_identical": true,
|
| 53 |
+
"defensibility_note": "Every source site is connected: each basal/apical source site is placed on the target segment of the same compartment type nearest in normalized arclength, so several sites can share a segment.",
|
| 54 |
+
"duplicated_source_sites_per_sign": {
|
| 55 |
+
"max": 0,
|
| 56 |
+
"mean": 0.0,
|
| 57 |
+
"min": 0
|
| 58 |
+
},
|
| 59 |
+
"morphology_segments": {
|
| 60 |
+
"max": 999,
|
| 61 |
+
"mean": 999.0,
|
| 62 |
+
"min": 999
|
| 63 |
+
},
|
| 64 |
+
"n_traces": 2,
|
| 65 |
+
"policy": "all_sites_by_type_arclength",
|
| 66 |
+
"source_sites_per_sign": {
|
| 67 |
+
"max": 639,
|
| 68 |
+
"mean": 639.0,
|
| 69 |
+
"min": 639
|
| 70 |
+
},
|
| 71 |
+
"status": "recorded",
|
| 72 |
+
"unique_source_sites_per_sign": {
|
| 73 |
+
"max": 639,
|
| 74 |
+
"mean": 639.0,
|
| 75 |
+
"min": 639
|
| 76 |
+
},
|
| 77 |
+
"unused_source_sites_per_sign": {
|
| 78 |
+
"max": 0,
|
| 79 |
+
"mean": 0.0,
|
| 80 |
+
"min": 0
|
| 81 |
+
},
|
| 82 |
+
"used_sites_per_sign": {
|
| 83 |
+
"max": 639,
|
| 84 |
+
"mean": 639.0,
|
| 85 |
+
"min": 639
|
| 86 |
+
}
|
| 87 |
+
},
|
| 88 |
+
"intervention": "inh_dropout",
|
| 89 |
+
"intervention_dose": 0.1,
|
| 90 |
+
"kind": "intervention",
|
| 91 |
+
"morphology_id": "neuronio_hay_cell1",
|
| 92 |
+
"morphology_path": "${AXOBENCH_SOURCE_ROOT}/morphologies/cell1.asc",
|
| 93 |
+
"samples": 2,
|
| 94 |
+
"shard_index": 794,
|
| 95 |
+
"teacher_balance_label": "axobench_ei_balanced"
|
| 96 |
+
}
|
minimal/interventions/inh_dropout_p10/neuronio_hay_cell1_intervention_pair_00795.json
ADDED
|
@@ -0,0 +1,96 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "neuron",
|
| 3 |
+
"coreneuron_gpu": false,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 291.6697565800023,
|
| 6 |
+
"exc_gmax_scale": 1.0,
|
| 7 |
+
"generator": {
|
| 8 |
+
"backend": "neuron",
|
| 9 |
+
"biophysics_hoc_sha256": "dec2a62342faaeeca6436110472f9485e069a434ef993649c6f2820c56cc28f3",
|
| 10 |
+
"code_revision": {
|
| 11 |
+
"commit": "112df5adf80562b47e92903f188426a5db59c0ab",
|
| 12 |
+
"dirty": false
|
| 13 |
+
},
|
| 14 |
+
"data_version": "v2",
|
| 15 |
+
"dt_ms": 0.025,
|
| 16 |
+
"exc_gmax_scale": 1.0,
|
| 17 |
+
"inh_gmax_scale": 1.0,
|
| 18 |
+
"input_routing": "all_sites_by_type",
|
| 19 |
+
"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 20 |
+
"integrator": "fixed_step",
|
| 21 |
+
"mechanism_files": [
|
| 22 |
+
"CaDynamics_E2.mod",
|
| 23 |
+
"Ca_HVA.mod",
|
| 24 |
+
"Ca_LVAst.mod",
|
| 25 |
+
"DetAMPANMDA.mod",
|
| 26 |
+
"DetGABA.mod",
|
| 27 |
+
"Ih.mod",
|
| 28 |
+
"Im.mod",
|
| 29 |
+
"K_Pst.mod",
|
| 30 |
+
"K_Tst.mod",
|
| 31 |
+
"NaTa_t.mod",
|
| 32 |
+
"NaTs2_t.mod",
|
| 33 |
+
"Nap_Et2.mod",
|
| 34 |
+
"SK_E2.mod",
|
| 35 |
+
"SKv3_1.mod"
|
| 36 |
+
],
|
| 37 |
+
"mechanisms_sha256": "f6470b942dc1bbf8ce20e5c561077bfacb294749494f4137c09634f1d283721f",
|
| 38 |
+
"morphology_sha256": "a8afc0925afec1dd9241528ee6ccfdcb1c321904d876835990592c2573567383",
|
| 39 |
+
"neuron_version": "9.0.2",
|
| 40 |
+
"nseg_policy": "d_lambda",
|
| 41 |
+
"soma_samples_per_ms": 4,
|
| 42 |
+
"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 43 |
+
"synapse_delay_ms": 0.0,
|
| 44 |
+
"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 45 |
+
"teacher": "hay",
|
| 46 |
+
"template_hoc_sha256": "c8c603bf3a9d1f595841b98fdb455d24301d0c4f6edbfc5f3ad67fa6b834f7fb",
|
| 47 |
+
"v_init_mv": -76.0
|
| 48 |
+
},
|
| 49 |
+
"inh_gmax_scale": 1.0,
|
| 50 |
+
"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 51 |
+
"input_routing": {
|
| 52 |
+
"all_traces_identical": true,
|
| 53 |
+
"defensibility_note": "Every source site is connected: each basal/apical source site is placed on the target segment of the same compartment type nearest in normalized arclength, so several sites can share a segment.",
|
| 54 |
+
"duplicated_source_sites_per_sign": {
|
| 55 |
+
"max": 0,
|
| 56 |
+
"mean": 0.0,
|
| 57 |
+
"min": 0
|
| 58 |
+
},
|
| 59 |
+
"morphology_segments": {
|
| 60 |
+
"max": 999,
|
| 61 |
+
"mean": 999.0,
|
| 62 |
+
"min": 999
|
| 63 |
+
},
|
| 64 |
+
"n_traces": 2,
|
| 65 |
+
"policy": "all_sites_by_type_arclength",
|
| 66 |
+
"source_sites_per_sign": {
|
| 67 |
+
"max": 639,
|
| 68 |
+
"mean": 639.0,
|
| 69 |
+
"min": 639
|
| 70 |
+
},
|
| 71 |
+
"status": "recorded",
|
| 72 |
+
"unique_source_sites_per_sign": {
|
| 73 |
+
"max": 639,
|
| 74 |
+
"mean": 639.0,
|
| 75 |
+
"min": 639
|
| 76 |
+
},
|
| 77 |
+
"unused_source_sites_per_sign": {
|
| 78 |
+
"max": 0,
|
| 79 |
+
"mean": 0.0,
|
| 80 |
+
"min": 0
|
| 81 |
+
},
|
| 82 |
+
"used_sites_per_sign": {
|
| 83 |
+
"max": 639,
|
| 84 |
+
"mean": 639.0,
|
| 85 |
+
"min": 639
|
| 86 |
+
}
|
| 87 |
+
},
|
| 88 |
+
"intervention": "inh_dropout",
|
| 89 |
+
"intervention_dose": 0.1,
|
| 90 |
+
"kind": "intervention",
|
| 91 |
+
"morphology_id": "neuronio_hay_cell1",
|
| 92 |
+
"morphology_path": "${AXOBENCH_SOURCE_ROOT}/morphologies/cell1.asc",
|
| 93 |
+
"samples": 2,
|
| 94 |
+
"shard_index": 795,
|
| 95 |
+
"teacher_balance_label": "axobench_ei_balanced"
|
| 96 |
+
}
|
minimal/interventions/inh_dropout_p10/neuronio_hay_cell1_intervention_pair_00796.json
ADDED
|
@@ -0,0 +1,96 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "neuron",
|
| 3 |
+
"coreneuron_gpu": false,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 290.6396109470006,
|
| 6 |
+
"exc_gmax_scale": 1.0,
|
| 7 |
+
"generator": {
|
| 8 |
+
"backend": "neuron",
|
| 9 |
+
"biophysics_hoc_sha256": "dec2a62342faaeeca6436110472f9485e069a434ef993649c6f2820c56cc28f3",
|
| 10 |
+
"code_revision": {
|
| 11 |
+
"commit": "112df5adf80562b47e92903f188426a5db59c0ab",
|
| 12 |
+
"dirty": false
|
| 13 |
+
},
|
| 14 |
+
"data_version": "v2",
|
| 15 |
+
"dt_ms": 0.025,
|
| 16 |
+
"exc_gmax_scale": 1.0,
|
| 17 |
+
"inh_gmax_scale": 1.0,
|
| 18 |
+
"input_routing": "all_sites_by_type",
|
| 19 |
+
"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 20 |
+
"integrator": "fixed_step",
|
| 21 |
+
"mechanism_files": [
|
| 22 |
+
"CaDynamics_E2.mod",
|
| 23 |
+
"Ca_HVA.mod",
|
| 24 |
+
"Ca_LVAst.mod",
|
| 25 |
+
"DetAMPANMDA.mod",
|
| 26 |
+
"DetGABA.mod",
|
| 27 |
+
"Ih.mod",
|
| 28 |
+
"Im.mod",
|
| 29 |
+
"K_Pst.mod",
|
| 30 |
+
"K_Tst.mod",
|
| 31 |
+
"NaTa_t.mod",
|
| 32 |
+
"NaTs2_t.mod",
|
| 33 |
+
"Nap_Et2.mod",
|
| 34 |
+
"SK_E2.mod",
|
| 35 |
+
"SKv3_1.mod"
|
| 36 |
+
],
|
| 37 |
+
"mechanisms_sha256": "f6470b942dc1bbf8ce20e5c561077bfacb294749494f4137c09634f1d283721f",
|
| 38 |
+
"morphology_sha256": "a8afc0925afec1dd9241528ee6ccfdcb1c321904d876835990592c2573567383",
|
| 39 |
+
"neuron_version": "9.0.2",
|
| 40 |
+
"nseg_policy": "d_lambda",
|
| 41 |
+
"soma_samples_per_ms": 4,
|
| 42 |
+
"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 43 |
+
"synapse_delay_ms": 0.0,
|
| 44 |
+
"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 45 |
+
"teacher": "hay",
|
| 46 |
+
"template_hoc_sha256": "c8c603bf3a9d1f595841b98fdb455d24301d0c4f6edbfc5f3ad67fa6b834f7fb",
|
| 47 |
+
"v_init_mv": -76.0
|
| 48 |
+
},
|
| 49 |
+
"inh_gmax_scale": 1.0,
|
| 50 |
+
"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 51 |
+
"input_routing": {
|
| 52 |
+
"all_traces_identical": true,
|
| 53 |
+
"defensibility_note": "Every source site is connected: each basal/apical source site is placed on the target segment of the same compartment type nearest in normalized arclength, so several sites can share a segment.",
|
| 54 |
+
"duplicated_source_sites_per_sign": {
|
| 55 |
+
"max": 0,
|
| 56 |
+
"mean": 0.0,
|
| 57 |
+
"min": 0
|
| 58 |
+
},
|
| 59 |
+
"morphology_segments": {
|
| 60 |
+
"max": 999,
|
| 61 |
+
"mean": 999.0,
|
| 62 |
+
"min": 999
|
| 63 |
+
},
|
| 64 |
+
"n_traces": 2,
|
| 65 |
+
"policy": "all_sites_by_type_arclength",
|
| 66 |
+
"source_sites_per_sign": {
|
| 67 |
+
"max": 639,
|
| 68 |
+
"mean": 639.0,
|
| 69 |
+
"min": 639
|
| 70 |
+
},
|
| 71 |
+
"status": "recorded",
|
| 72 |
+
"unique_source_sites_per_sign": {
|
| 73 |
+
"max": 639,
|
| 74 |
+
"mean": 639.0,
|
| 75 |
+
"min": 639
|
| 76 |
+
},
|
| 77 |
+
"unused_source_sites_per_sign": {
|
| 78 |
+
"max": 0,
|
| 79 |
+
"mean": 0.0,
|
| 80 |
+
"min": 0
|
| 81 |
+
},
|
| 82 |
+
"used_sites_per_sign": {
|
| 83 |
+
"max": 639,
|
| 84 |
+
"mean": 639.0,
|
| 85 |
+
"min": 639
|
| 86 |
+
}
|
| 87 |
+
},
|
| 88 |
+
"intervention": "inh_dropout",
|
| 89 |
+
"intervention_dose": 0.1,
|
| 90 |
+
"kind": "intervention",
|
| 91 |
+
"morphology_id": "neuronio_hay_cell1",
|
| 92 |
+
"morphology_path": "${AXOBENCH_SOURCE_ROOT}/morphologies/cell1.asc",
|
| 93 |
+
"samples": 2,
|
| 94 |
+
"shard_index": 796,
|
| 95 |
+
"teacher_balance_label": "axobench_ei_balanced"
|
| 96 |
+
}
|
minimal/interventions/inh_dropout_p10/neuronio_hay_cell1_intervention_pair_00797.json
ADDED
|
@@ -0,0 +1,96 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "neuron",
|
| 3 |
+
"coreneuron_gpu": false,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 291.1147642720025,
|
| 6 |
+
"exc_gmax_scale": 1.0,
|
| 7 |
+
"generator": {
|
| 8 |
+
"backend": "neuron",
|
| 9 |
+
"biophysics_hoc_sha256": "dec2a62342faaeeca6436110472f9485e069a434ef993649c6f2820c56cc28f3",
|
| 10 |
+
"code_revision": {
|
| 11 |
+
"commit": "112df5adf80562b47e92903f188426a5db59c0ab",
|
| 12 |
+
"dirty": false
|
| 13 |
+
},
|
| 14 |
+
"data_version": "v2",
|
| 15 |
+
"dt_ms": 0.025,
|
| 16 |
+
"exc_gmax_scale": 1.0,
|
| 17 |
+
"inh_gmax_scale": 1.0,
|
| 18 |
+
"input_routing": "all_sites_by_type",
|
| 19 |
+
"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 20 |
+
"integrator": "fixed_step",
|
| 21 |
+
"mechanism_files": [
|
| 22 |
+
"CaDynamics_E2.mod",
|
| 23 |
+
"Ca_HVA.mod",
|
| 24 |
+
"Ca_LVAst.mod",
|
| 25 |
+
"DetAMPANMDA.mod",
|
| 26 |
+
"DetGABA.mod",
|
| 27 |
+
"Ih.mod",
|
| 28 |
+
"Im.mod",
|
| 29 |
+
"K_Pst.mod",
|
| 30 |
+
"K_Tst.mod",
|
| 31 |
+
"NaTa_t.mod",
|
| 32 |
+
"NaTs2_t.mod",
|
| 33 |
+
"Nap_Et2.mod",
|
| 34 |
+
"SK_E2.mod",
|
| 35 |
+
"SKv3_1.mod"
|
| 36 |
+
],
|
| 37 |
+
"mechanisms_sha256": "f6470b942dc1bbf8ce20e5c561077bfacb294749494f4137c09634f1d283721f",
|
| 38 |
+
"morphology_sha256": "a8afc0925afec1dd9241528ee6ccfdcb1c321904d876835990592c2573567383",
|
| 39 |
+
"neuron_version": "9.0.2",
|
| 40 |
+
"nseg_policy": "d_lambda",
|
| 41 |
+
"soma_samples_per_ms": 4,
|
| 42 |
+
"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 43 |
+
"synapse_delay_ms": 0.0,
|
| 44 |
+
"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 45 |
+
"teacher": "hay",
|
| 46 |
+
"template_hoc_sha256": "c8c603bf3a9d1f595841b98fdb455d24301d0c4f6edbfc5f3ad67fa6b834f7fb",
|
| 47 |
+
"v_init_mv": -76.0
|
| 48 |
+
},
|
| 49 |
+
"inh_gmax_scale": 1.0,
|
| 50 |
+
"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 51 |
+
"input_routing": {
|
| 52 |
+
"all_traces_identical": true,
|
| 53 |
+
"defensibility_note": "Every source site is connected: each basal/apical source site is placed on the target segment of the same compartment type nearest in normalized arclength, so several sites can share a segment.",
|
| 54 |
+
"duplicated_source_sites_per_sign": {
|
| 55 |
+
"max": 0,
|
| 56 |
+
"mean": 0.0,
|
| 57 |
+
"min": 0
|
| 58 |
+
},
|
| 59 |
+
"morphology_segments": {
|
| 60 |
+
"max": 999,
|
| 61 |
+
"mean": 999.0,
|
| 62 |
+
"min": 999
|
| 63 |
+
},
|
| 64 |
+
"n_traces": 2,
|
| 65 |
+
"policy": "all_sites_by_type_arclength",
|
| 66 |
+
"source_sites_per_sign": {
|
| 67 |
+
"max": 639,
|
| 68 |
+
"mean": 639.0,
|
| 69 |
+
"min": 639
|
| 70 |
+
},
|
| 71 |
+
"status": "recorded",
|
| 72 |
+
"unique_source_sites_per_sign": {
|
| 73 |
+
"max": 639,
|
| 74 |
+
"mean": 639.0,
|
| 75 |
+
"min": 639
|
| 76 |
+
},
|
| 77 |
+
"unused_source_sites_per_sign": {
|
| 78 |
+
"max": 0,
|
| 79 |
+
"mean": 0.0,
|
| 80 |
+
"min": 0
|
| 81 |
+
},
|
| 82 |
+
"used_sites_per_sign": {
|
| 83 |
+
"max": 639,
|
| 84 |
+
"mean": 639.0,
|
| 85 |
+
"min": 639
|
| 86 |
+
}
|
| 87 |
+
},
|
| 88 |
+
"intervention": "inh_dropout",
|
| 89 |
+
"intervention_dose": 0.1,
|
| 90 |
+
"kind": "intervention",
|
| 91 |
+
"morphology_id": "neuronio_hay_cell1",
|
| 92 |
+
"morphology_path": "${AXOBENCH_SOURCE_ROOT}/morphologies/cell1.asc",
|
| 93 |
+
"samples": 2,
|
| 94 |
+
"shard_index": 797,
|
| 95 |
+
"teacher_balance_label": "axobench_ei_balanced"
|
| 96 |
+
}
|
minimal/interventions/inh_dropout_p10/specimen_314822529_intervention_pair_04047.json
ADDED
|
@@ -0,0 +1,107 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "neuron",
|
| 3 |
+
"coreneuron_gpu": false,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 331.84834696800317,
|
| 6 |
+
"exc_gmax_scale": 0.859309649061239,
|
| 7 |
+
"generator": {
|
| 8 |
+
"allen_model_id": 497229124,
|
| 9 |
+
"allen_specimen_id": 314822529,
|
| 10 |
+
"axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um",
|
| 11 |
+
"backend": "neuron",
|
| 12 |
+
"biophysics_hoc_sha256": null,
|
| 13 |
+
"celsius": 34.0,
|
| 14 |
+
"code_revision": {
|
| 15 |
+
"commit": "112df5adf80562b47e92903f188426a5db59c0ab",
|
| 16 |
+
"dirty": false
|
| 17 |
+
},
|
| 18 |
+
"data_version": "v2",
|
| 19 |
+
"dt_ms": 0.025,
|
| 20 |
+
"exc_gmax_scale": 0.859309649061239,
|
| 21 |
+
"fit_parameters_sha256": "a8a5f14280f3a6bc1c614e972169f8068f6c8111701eb2cb42795bce9f09672e",
|
| 22 |
+
"inh_gmax_scale": 1.0,
|
| 23 |
+
"input_routing": "all_sites_by_type",
|
| 24 |
+
"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 25 |
+
"integrator": "fixed_step",
|
| 26 |
+
"junction_potential_mv": -14.0,
|
| 27 |
+
"mechanism_files": [
|
| 28 |
+
"CaDynamics.mod",
|
| 29 |
+
"Ca_HVA.mod",
|
| 30 |
+
"Ca_LVA.mod",
|
| 31 |
+
"DetAMPANMDA.mod",
|
| 32 |
+
"DetGABA.mod",
|
| 33 |
+
"Ih.mod",
|
| 34 |
+
"Im.mod",
|
| 35 |
+
"Im_v2.mod",
|
| 36 |
+
"K_P.mod",
|
| 37 |
+
"K_T.mod",
|
| 38 |
+
"Kd.mod",
|
| 39 |
+
"Kv2like.mod",
|
| 40 |
+
"Kv3_1.mod",
|
| 41 |
+
"NaTa.mod",
|
| 42 |
+
"NaTs.mod",
|
| 43 |
+
"NaV.mod",
|
| 44 |
+
"Nap.mod",
|
| 45 |
+
"SK.mod"
|
| 46 |
+
],
|
| 47 |
+
"mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042",
|
| 48 |
+
"morphology_sha256": "4c5f25ba8928cf0a742b375828b1b1c171cf1cacc96755099e9df5210277cb13",
|
| 49 |
+
"neuron_version": "9.0.2",
|
| 50 |
+
"nseg_policy": "allen_fit",
|
| 51 |
+
"soma_samples_per_ms": 4,
|
| 52 |
+
"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 53 |
+
"synapse_delay_ms": 0.0,
|
| 54 |
+
"synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)",
|
| 55 |
+
"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 56 |
+
"teacher": "allen_all_active",
|
| 57 |
+
"template_hoc_sha256": null,
|
| 58 |
+
"v_init_mv": -90.0
|
| 59 |
+
},
|
| 60 |
+
"inh_gmax_scale": 1.0,
|
| 61 |
+
"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 62 |
+
"input_routing": {
|
| 63 |
+
"all_traces_identical": true,
|
| 64 |
+
"defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.",
|
| 65 |
+
"duplicated_source_sites_per_sign": {
|
| 66 |
+
"max": 0,
|
| 67 |
+
"mean": 0.0,
|
| 68 |
+
"min": 0
|
| 69 |
+
},
|
| 70 |
+
"morphology_segments": {
|
| 71 |
+
"max": 220,
|
| 72 |
+
"mean": 220.0,
|
| 73 |
+
"min": 220
|
| 74 |
+
},
|
| 75 |
+
"n_traces": 2,
|
| 76 |
+
"policy": "source_site_preserving_normalized_arclength",
|
| 77 |
+
"source_sites_per_sign": {
|
| 78 |
+
"max": 639,
|
| 79 |
+
"mean": 639.0,
|
| 80 |
+
"min": 639
|
| 81 |
+
},
|
| 82 |
+
"status": "recorded",
|
| 83 |
+
"unique_source_sites_per_sign": {
|
| 84 |
+
"max": 639,
|
| 85 |
+
"mean": 639.0,
|
| 86 |
+
"min": 639
|
| 87 |
+
},
|
| 88 |
+
"unused_source_sites_per_sign": {
|
| 89 |
+
"max": 0,
|
| 90 |
+
"mean": 0.0,
|
| 91 |
+
"min": 0
|
| 92 |
+
},
|
| 93 |
+
"used_sites_per_sign": {
|
| 94 |
+
"max": 639,
|
| 95 |
+
"mean": 639.0,
|
| 96 |
+
"min": 639
|
| 97 |
+
}
|
| 98 |
+
},
|
| 99 |
+
"intervention": "inh_dropout",
|
| 100 |
+
"intervention_dose": 0.1,
|
| 101 |
+
"kind": "intervention",
|
| 102 |
+
"morphology_id": "specimen_314822529",
|
| 103 |
+
"morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_314822529/model",
|
| 104 |
+
"samples": 2,
|
| 105 |
+
"shard_index": 4047,
|
| 106 |
+
"teacher_balance_label": "axobench_ei_balanced"
|
| 107 |
+
}
|
minimal/interventions/inh_dropout_p10/specimen_314822529_intervention_pair_04048.json
ADDED
|
@@ -0,0 +1,107 @@
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
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|
|
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|
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|
|
|
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|
|
|
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|
|
|
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|
|
|
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|
|
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|
|
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|
|
|
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|
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|
|
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|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "neuron",
|
| 3 |
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|
| 4 |
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|
| 5 |
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|
| 6 |
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|
| 7 |
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|
| 8 |
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|
| 9 |
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|
| 10 |
+
"axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um",
|
| 11 |
+
"backend": "neuron",
|
| 12 |
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|
| 13 |
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|
| 14 |
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|
| 15 |
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|
| 16 |
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|
| 17 |
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|
| 18 |
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|
| 19 |
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|
| 20 |
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|
| 21 |
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|
| 22 |
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"inh_gmax_scale": 1.0,
|
| 23 |
+
"input_routing": "all_sites_by_type",
|
| 24 |
+
"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 25 |
+
"integrator": "fixed_step",
|
| 26 |
+
"junction_potential_mv": -14.0,
|
| 27 |
+
"mechanism_files": [
|
| 28 |
+
"CaDynamics.mod",
|
| 29 |
+
"Ca_HVA.mod",
|
| 30 |
+
"Ca_LVA.mod",
|
| 31 |
+
"DetAMPANMDA.mod",
|
| 32 |
+
"DetGABA.mod",
|
| 33 |
+
"Ih.mod",
|
| 34 |
+
"Im.mod",
|
| 35 |
+
"Im_v2.mod",
|
| 36 |
+
"K_P.mod",
|
| 37 |
+
"K_T.mod",
|
| 38 |
+
"Kd.mod",
|
| 39 |
+
"Kv2like.mod",
|
| 40 |
+
"Kv3_1.mod",
|
| 41 |
+
"NaTa.mod",
|
| 42 |
+
"NaTs.mod",
|
| 43 |
+
"NaV.mod",
|
| 44 |
+
"Nap.mod",
|
| 45 |
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"SK.mod"
|
| 46 |
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],
|
| 47 |
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"mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042",
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| 48 |
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| 49 |
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"neuron_version": "9.0.2",
|
| 50 |
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"nseg_policy": "allen_fit",
|
| 51 |
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"soma_samples_per_ms": 4,
|
| 52 |
+
"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 53 |
+
"synapse_delay_ms": 0.0,
|
| 54 |
+
"synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)",
|
| 55 |
+
"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 56 |
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"teacher": "allen_all_active",
|
| 57 |
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"template_hoc_sha256": null,
|
| 58 |
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"v_init_mv": -90.0
|
| 59 |
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},
|
| 60 |
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"inh_gmax_scale": 1.0,
|
| 61 |
+
"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 62 |
+
"input_routing": {
|
| 63 |
+
"all_traces_identical": true,
|
| 64 |
+
"defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.",
|
| 65 |
+
"duplicated_source_sites_per_sign": {
|
| 66 |
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"max": 0,
|
| 67 |
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"mean": 0.0,
|
| 68 |
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"min": 0
|
| 69 |
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},
|
| 70 |
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"morphology_segments": {
|
| 71 |
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"max": 220,
|
| 72 |
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"mean": 220.0,
|
| 73 |
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"min": 220
|
| 74 |
+
},
|
| 75 |
+
"n_traces": 2,
|
| 76 |
+
"policy": "source_site_preserving_normalized_arclength",
|
| 77 |
+
"source_sites_per_sign": {
|
| 78 |
+
"max": 639,
|
| 79 |
+
"mean": 639.0,
|
| 80 |
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"min": 639
|
| 81 |
+
},
|
| 82 |
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"status": "recorded",
|
| 83 |
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"unique_source_sites_per_sign": {
|
| 84 |
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"max": 639,
|
| 85 |
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"mean": 639.0,
|
| 86 |
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"min": 639
|
| 87 |
+
},
|
| 88 |
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"unused_source_sites_per_sign": {
|
| 89 |
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"max": 0,
|
| 90 |
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"mean": 0.0,
|
| 91 |
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"min": 0
|
| 92 |
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},
|
| 93 |
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"used_sites_per_sign": {
|
| 94 |
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"max": 639,
|
| 95 |
+
"mean": 639.0,
|
| 96 |
+
"min": 639
|
| 97 |
+
}
|
| 98 |
+
},
|
| 99 |
+
"intervention": "inh_dropout",
|
| 100 |
+
"intervention_dose": 0.1,
|
| 101 |
+
"kind": "intervention",
|
| 102 |
+
"morphology_id": "specimen_314822529",
|
| 103 |
+
"morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_314822529/model",
|
| 104 |
+
"samples": 2,
|
| 105 |
+
"shard_index": 4048,
|
| 106 |
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"teacher_balance_label": "axobench_ei_balanced"
|
| 107 |
+
}
|
minimal/interventions/inh_dropout_p10/specimen_314822529_intervention_pair_04049.json
ADDED
|
@@ -0,0 +1,107 @@
|
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|
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|
|
|
|
|
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|
|
|
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|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "neuron",
|
| 3 |
+
"coreneuron_gpu": false,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
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|
| 6 |
+
"exc_gmax_scale": 0.859309649061239,
|
| 7 |
+
"generator": {
|
| 8 |
+
"allen_model_id": 497229124,
|
| 9 |
+
"allen_specimen_id": 314822529,
|
| 10 |
+
"axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um",
|
| 11 |
+
"backend": "neuron",
|
| 12 |
+
"biophysics_hoc_sha256": null,
|
| 13 |
+
"celsius": 34.0,
|
| 14 |
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"code_revision": {
|
| 15 |
+
"commit": "112df5adf80562b47e92903f188426a5db59c0ab",
|
| 16 |
+
"dirty": false
|
| 17 |
+
},
|
| 18 |
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"data_version": "v2",
|
| 19 |
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|
| 20 |
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|
| 21 |
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|
| 22 |
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|
| 23 |
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|
| 24 |
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"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 25 |
+
"integrator": "fixed_step",
|
| 26 |
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"junction_potential_mv": -14.0,
|
| 27 |
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"mechanism_files": [
|
| 28 |
+
"CaDynamics.mod",
|
| 29 |
+
"Ca_HVA.mod",
|
| 30 |
+
"Ca_LVA.mod",
|
| 31 |
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"DetAMPANMDA.mod",
|
| 32 |
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"DetGABA.mod",
|
| 33 |
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"Ih.mod",
|
| 34 |
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"Im.mod",
|
| 35 |
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"Im_v2.mod",
|
| 36 |
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"K_P.mod",
|
| 37 |
+
"K_T.mod",
|
| 38 |
+
"Kd.mod",
|
| 39 |
+
"Kv2like.mod",
|
| 40 |
+
"Kv3_1.mod",
|
| 41 |
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"NaTa.mod",
|
| 42 |
+
"NaTs.mod",
|
| 43 |
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"NaV.mod",
|
| 44 |
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"Nap.mod",
|
| 45 |
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"SK.mod"
|
| 46 |
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|
| 47 |
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| 48 |
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| 49 |
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|
| 50 |
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"nseg_policy": "allen_fit",
|
| 51 |
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|
| 52 |
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"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 53 |
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"synapse_delay_ms": 0.0,
|
| 54 |
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"synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)",
|
| 55 |
+
"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 56 |
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"teacher": "allen_all_active",
|
| 57 |
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"template_hoc_sha256": null,
|
| 58 |
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"v_init_mv": -90.0
|
| 59 |
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},
|
| 60 |
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"inh_gmax_scale": 1.0,
|
| 61 |
+
"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 62 |
+
"input_routing": {
|
| 63 |
+
"all_traces_identical": true,
|
| 64 |
+
"defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.",
|
| 65 |
+
"duplicated_source_sites_per_sign": {
|
| 66 |
+
"max": 0,
|
| 67 |
+
"mean": 0.0,
|
| 68 |
+
"min": 0
|
| 69 |
+
},
|
| 70 |
+
"morphology_segments": {
|
| 71 |
+
"max": 220,
|
| 72 |
+
"mean": 220.0,
|
| 73 |
+
"min": 220
|
| 74 |
+
},
|
| 75 |
+
"n_traces": 2,
|
| 76 |
+
"policy": "source_site_preserving_normalized_arclength",
|
| 77 |
+
"source_sites_per_sign": {
|
| 78 |
+
"max": 639,
|
| 79 |
+
"mean": 639.0,
|
| 80 |
+
"min": 639
|
| 81 |
+
},
|
| 82 |
+
"status": "recorded",
|
| 83 |
+
"unique_source_sites_per_sign": {
|
| 84 |
+
"max": 639,
|
| 85 |
+
"mean": 639.0,
|
| 86 |
+
"min": 639
|
| 87 |
+
},
|
| 88 |
+
"unused_source_sites_per_sign": {
|
| 89 |
+
"max": 0,
|
| 90 |
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"mean": 0.0,
|
| 91 |
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"min": 0
|
| 92 |
+
},
|
| 93 |
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"used_sites_per_sign": {
|
| 94 |
+
"max": 639,
|
| 95 |
+
"mean": 639.0,
|
| 96 |
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"min": 639
|
| 97 |
+
}
|
| 98 |
+
},
|
| 99 |
+
"intervention": "inh_dropout",
|
| 100 |
+
"intervention_dose": 0.1,
|
| 101 |
+
"kind": "intervention",
|
| 102 |
+
"morphology_id": "specimen_314822529",
|
| 103 |
+
"morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_314822529/model",
|
| 104 |
+
"samples": 2,
|
| 105 |
+
"shard_index": 4049,
|
| 106 |
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"teacher_balance_label": "axobench_ei_balanced"
|
| 107 |
+
}
|
minimal/interventions/inh_dropout_p10/specimen_314822529_intervention_pair_04050.json
ADDED
|
@@ -0,0 +1,107 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
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|
|
|
|
|
|
|
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|
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|
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|
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|
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|
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|
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|
|
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|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "neuron",
|
| 3 |
+
"coreneuron_gpu": false,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 332.91466941900217,
|
| 6 |
+
"exc_gmax_scale": 0.859309649061239,
|
| 7 |
+
"generator": {
|
| 8 |
+
"allen_model_id": 497229124,
|
| 9 |
+
"allen_specimen_id": 314822529,
|
| 10 |
+
"axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um",
|
| 11 |
+
"backend": "neuron",
|
| 12 |
+
"biophysics_hoc_sha256": null,
|
| 13 |
+
"celsius": 34.0,
|
| 14 |
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"code_revision": {
|
| 15 |
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"commit": "112df5adf80562b47e92903f188426a5db59c0ab",
|
| 16 |
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"dirty": false
|
| 17 |
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},
|
| 18 |
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"data_version": "v2",
|
| 19 |
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"dt_ms": 0.025,
|
| 20 |
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"exc_gmax_scale": 0.859309649061239,
|
| 21 |
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"fit_parameters_sha256": "a8a5f14280f3a6bc1c614e972169f8068f6c8111701eb2cb42795bce9f09672e",
|
| 22 |
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"inh_gmax_scale": 1.0,
|
| 23 |
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"input_routing": "all_sites_by_type",
|
| 24 |
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"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 25 |
+
"integrator": "fixed_step",
|
| 26 |
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"junction_potential_mv": -14.0,
|
| 27 |
+
"mechanism_files": [
|
| 28 |
+
"CaDynamics.mod",
|
| 29 |
+
"Ca_HVA.mod",
|
| 30 |
+
"Ca_LVA.mod",
|
| 31 |
+
"DetAMPANMDA.mod",
|
| 32 |
+
"DetGABA.mod",
|
| 33 |
+
"Ih.mod",
|
| 34 |
+
"Im.mod",
|
| 35 |
+
"Im_v2.mod",
|
| 36 |
+
"K_P.mod",
|
| 37 |
+
"K_T.mod",
|
| 38 |
+
"Kd.mod",
|
| 39 |
+
"Kv2like.mod",
|
| 40 |
+
"Kv3_1.mod",
|
| 41 |
+
"NaTa.mod",
|
| 42 |
+
"NaTs.mod",
|
| 43 |
+
"NaV.mod",
|
| 44 |
+
"Nap.mod",
|
| 45 |
+
"SK.mod"
|
| 46 |
+
],
|
| 47 |
+
"mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042",
|
| 48 |
+
"morphology_sha256": "4c5f25ba8928cf0a742b375828b1b1c171cf1cacc96755099e9df5210277cb13",
|
| 49 |
+
"neuron_version": "9.0.2",
|
| 50 |
+
"nseg_policy": "allen_fit",
|
| 51 |
+
"soma_samples_per_ms": 4,
|
| 52 |
+
"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 53 |
+
"synapse_delay_ms": 0.0,
|
| 54 |
+
"synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)",
|
| 55 |
+
"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 56 |
+
"teacher": "allen_all_active",
|
| 57 |
+
"template_hoc_sha256": null,
|
| 58 |
+
"v_init_mv": -90.0
|
| 59 |
+
},
|
| 60 |
+
"inh_gmax_scale": 1.0,
|
| 61 |
+
"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 62 |
+
"input_routing": {
|
| 63 |
+
"all_traces_identical": true,
|
| 64 |
+
"defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.",
|
| 65 |
+
"duplicated_source_sites_per_sign": {
|
| 66 |
+
"max": 0,
|
| 67 |
+
"mean": 0.0,
|
| 68 |
+
"min": 0
|
| 69 |
+
},
|
| 70 |
+
"morphology_segments": {
|
| 71 |
+
"max": 220,
|
| 72 |
+
"mean": 220.0,
|
| 73 |
+
"min": 220
|
| 74 |
+
},
|
| 75 |
+
"n_traces": 2,
|
| 76 |
+
"policy": "source_site_preserving_normalized_arclength",
|
| 77 |
+
"source_sites_per_sign": {
|
| 78 |
+
"max": 639,
|
| 79 |
+
"mean": 639.0,
|
| 80 |
+
"min": 639
|
| 81 |
+
},
|
| 82 |
+
"status": "recorded",
|
| 83 |
+
"unique_source_sites_per_sign": {
|
| 84 |
+
"max": 639,
|
| 85 |
+
"mean": 639.0,
|
| 86 |
+
"min": 639
|
| 87 |
+
},
|
| 88 |
+
"unused_source_sites_per_sign": {
|
| 89 |
+
"max": 0,
|
| 90 |
+
"mean": 0.0,
|
| 91 |
+
"min": 0
|
| 92 |
+
},
|
| 93 |
+
"used_sites_per_sign": {
|
| 94 |
+
"max": 639,
|
| 95 |
+
"mean": 639.0,
|
| 96 |
+
"min": 639
|
| 97 |
+
}
|
| 98 |
+
},
|
| 99 |
+
"intervention": "inh_dropout",
|
| 100 |
+
"intervention_dose": 0.1,
|
| 101 |
+
"kind": "intervention",
|
| 102 |
+
"morphology_id": "specimen_314822529",
|
| 103 |
+
"morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_314822529/model",
|
| 104 |
+
"samples": 2,
|
| 105 |
+
"shard_index": 4050,
|
| 106 |
+
"teacher_balance_label": "axobench_ei_balanced"
|
| 107 |
+
}
|
minimal/interventions/inh_dropout_p10/specimen_314822529_intervention_pair_04051.json
ADDED
|
@@ -0,0 +1,107 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "neuron",
|
| 3 |
+
"coreneuron_gpu": false,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 331.2873131720007,
|
| 6 |
+
"exc_gmax_scale": 0.859309649061239,
|
| 7 |
+
"generator": {
|
| 8 |
+
"allen_model_id": 497229124,
|
| 9 |
+
"allen_specimen_id": 314822529,
|
| 10 |
+
"axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um",
|
| 11 |
+
"backend": "neuron",
|
| 12 |
+
"biophysics_hoc_sha256": null,
|
| 13 |
+
"celsius": 34.0,
|
| 14 |
+
"code_revision": {
|
| 15 |
+
"commit": "112df5adf80562b47e92903f188426a5db59c0ab",
|
| 16 |
+
"dirty": false
|
| 17 |
+
},
|
| 18 |
+
"data_version": "v2",
|
| 19 |
+
"dt_ms": 0.025,
|
| 20 |
+
"exc_gmax_scale": 0.859309649061239,
|
| 21 |
+
"fit_parameters_sha256": "a8a5f14280f3a6bc1c614e972169f8068f6c8111701eb2cb42795bce9f09672e",
|
| 22 |
+
"inh_gmax_scale": 1.0,
|
| 23 |
+
"input_routing": "all_sites_by_type",
|
| 24 |
+
"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 25 |
+
"integrator": "fixed_step",
|
| 26 |
+
"junction_potential_mv": -14.0,
|
| 27 |
+
"mechanism_files": [
|
| 28 |
+
"CaDynamics.mod",
|
| 29 |
+
"Ca_HVA.mod",
|
| 30 |
+
"Ca_LVA.mod",
|
| 31 |
+
"DetAMPANMDA.mod",
|
| 32 |
+
"DetGABA.mod",
|
| 33 |
+
"Ih.mod",
|
| 34 |
+
"Im.mod",
|
| 35 |
+
"Im_v2.mod",
|
| 36 |
+
"K_P.mod",
|
| 37 |
+
"K_T.mod",
|
| 38 |
+
"Kd.mod",
|
| 39 |
+
"Kv2like.mod",
|
| 40 |
+
"Kv3_1.mod",
|
| 41 |
+
"NaTa.mod",
|
| 42 |
+
"NaTs.mod",
|
| 43 |
+
"NaV.mod",
|
| 44 |
+
"Nap.mod",
|
| 45 |
+
"SK.mod"
|
| 46 |
+
],
|
| 47 |
+
"mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042",
|
| 48 |
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"morphology_sha256": "4c5f25ba8928cf0a742b375828b1b1c171cf1cacc96755099e9df5210277cb13",
|
| 49 |
+
"neuron_version": "9.0.2",
|
| 50 |
+
"nseg_policy": "allen_fit",
|
| 51 |
+
"soma_samples_per_ms": 4,
|
| 52 |
+
"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 53 |
+
"synapse_delay_ms": 0.0,
|
| 54 |
+
"synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)",
|
| 55 |
+
"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 56 |
+
"teacher": "allen_all_active",
|
| 57 |
+
"template_hoc_sha256": null,
|
| 58 |
+
"v_init_mv": -90.0
|
| 59 |
+
},
|
| 60 |
+
"inh_gmax_scale": 1.0,
|
| 61 |
+
"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 62 |
+
"input_routing": {
|
| 63 |
+
"all_traces_identical": true,
|
| 64 |
+
"defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.",
|
| 65 |
+
"duplicated_source_sites_per_sign": {
|
| 66 |
+
"max": 0,
|
| 67 |
+
"mean": 0.0,
|
| 68 |
+
"min": 0
|
| 69 |
+
},
|
| 70 |
+
"morphology_segments": {
|
| 71 |
+
"max": 220,
|
| 72 |
+
"mean": 220.0,
|
| 73 |
+
"min": 220
|
| 74 |
+
},
|
| 75 |
+
"n_traces": 2,
|
| 76 |
+
"policy": "source_site_preserving_normalized_arclength",
|
| 77 |
+
"source_sites_per_sign": {
|
| 78 |
+
"max": 639,
|
| 79 |
+
"mean": 639.0,
|
| 80 |
+
"min": 639
|
| 81 |
+
},
|
| 82 |
+
"status": "recorded",
|
| 83 |
+
"unique_source_sites_per_sign": {
|
| 84 |
+
"max": 639,
|
| 85 |
+
"mean": 639.0,
|
| 86 |
+
"min": 639
|
| 87 |
+
},
|
| 88 |
+
"unused_source_sites_per_sign": {
|
| 89 |
+
"max": 0,
|
| 90 |
+
"mean": 0.0,
|
| 91 |
+
"min": 0
|
| 92 |
+
},
|
| 93 |
+
"used_sites_per_sign": {
|
| 94 |
+
"max": 639,
|
| 95 |
+
"mean": 639.0,
|
| 96 |
+
"min": 639
|
| 97 |
+
}
|
| 98 |
+
},
|
| 99 |
+
"intervention": "inh_dropout",
|
| 100 |
+
"intervention_dose": 0.1,
|
| 101 |
+
"kind": "intervention",
|
| 102 |
+
"morphology_id": "specimen_314822529",
|
| 103 |
+
"morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_314822529/model",
|
| 104 |
+
"samples": 2,
|
| 105 |
+
"shard_index": 4051,
|
| 106 |
+
"teacher_balance_label": "axobench_ei_balanced"
|
| 107 |
+
}
|
minimal/interventions/inh_dropout_p10/specimen_314822529_intervention_pair_04052.json
ADDED
|
@@ -0,0 +1,107 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "neuron",
|
| 3 |
+
"coreneuron_gpu": false,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 329.775168578999,
|
| 6 |
+
"exc_gmax_scale": 0.859309649061239,
|
| 7 |
+
"generator": {
|
| 8 |
+
"allen_model_id": 497229124,
|
| 9 |
+
"allen_specimen_id": 314822529,
|
| 10 |
+
"axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um",
|
| 11 |
+
"backend": "neuron",
|
| 12 |
+
"biophysics_hoc_sha256": null,
|
| 13 |
+
"celsius": 34.0,
|
| 14 |
+
"code_revision": {
|
| 15 |
+
"commit": "112df5adf80562b47e92903f188426a5db59c0ab",
|
| 16 |
+
"dirty": false
|
| 17 |
+
},
|
| 18 |
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"data_version": "v2",
|
| 19 |
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"dt_ms": 0.025,
|
| 20 |
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"exc_gmax_scale": 0.859309649061239,
|
| 21 |
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"fit_parameters_sha256": "a8a5f14280f3a6bc1c614e972169f8068f6c8111701eb2cb42795bce9f09672e",
|
| 22 |
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"inh_gmax_scale": 1.0,
|
| 23 |
+
"input_routing": "all_sites_by_type",
|
| 24 |
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"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 25 |
+
"integrator": "fixed_step",
|
| 26 |
+
"junction_potential_mv": -14.0,
|
| 27 |
+
"mechanism_files": [
|
| 28 |
+
"CaDynamics.mod",
|
| 29 |
+
"Ca_HVA.mod",
|
| 30 |
+
"Ca_LVA.mod",
|
| 31 |
+
"DetAMPANMDA.mod",
|
| 32 |
+
"DetGABA.mod",
|
| 33 |
+
"Ih.mod",
|
| 34 |
+
"Im.mod",
|
| 35 |
+
"Im_v2.mod",
|
| 36 |
+
"K_P.mod",
|
| 37 |
+
"K_T.mod",
|
| 38 |
+
"Kd.mod",
|
| 39 |
+
"Kv2like.mod",
|
| 40 |
+
"Kv3_1.mod",
|
| 41 |
+
"NaTa.mod",
|
| 42 |
+
"NaTs.mod",
|
| 43 |
+
"NaV.mod",
|
| 44 |
+
"Nap.mod",
|
| 45 |
+
"SK.mod"
|
| 46 |
+
],
|
| 47 |
+
"mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042",
|
| 48 |
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"morphology_sha256": "4c5f25ba8928cf0a742b375828b1b1c171cf1cacc96755099e9df5210277cb13",
|
| 49 |
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"neuron_version": "9.0.2",
|
| 50 |
+
"nseg_policy": "allen_fit",
|
| 51 |
+
"soma_samples_per_ms": 4,
|
| 52 |
+
"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 53 |
+
"synapse_delay_ms": 0.0,
|
| 54 |
+
"synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)",
|
| 55 |
+
"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 56 |
+
"teacher": "allen_all_active",
|
| 57 |
+
"template_hoc_sha256": null,
|
| 58 |
+
"v_init_mv": -90.0
|
| 59 |
+
},
|
| 60 |
+
"inh_gmax_scale": 1.0,
|
| 61 |
+
"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 62 |
+
"input_routing": {
|
| 63 |
+
"all_traces_identical": true,
|
| 64 |
+
"defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.",
|
| 65 |
+
"duplicated_source_sites_per_sign": {
|
| 66 |
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"max": 0,
|
| 67 |
+
"mean": 0.0,
|
| 68 |
+
"min": 0
|
| 69 |
+
},
|
| 70 |
+
"morphology_segments": {
|
| 71 |
+
"max": 220,
|
| 72 |
+
"mean": 220.0,
|
| 73 |
+
"min": 220
|
| 74 |
+
},
|
| 75 |
+
"n_traces": 2,
|
| 76 |
+
"policy": "source_site_preserving_normalized_arclength",
|
| 77 |
+
"source_sites_per_sign": {
|
| 78 |
+
"max": 639,
|
| 79 |
+
"mean": 639.0,
|
| 80 |
+
"min": 639
|
| 81 |
+
},
|
| 82 |
+
"status": "recorded",
|
| 83 |
+
"unique_source_sites_per_sign": {
|
| 84 |
+
"max": 639,
|
| 85 |
+
"mean": 639.0,
|
| 86 |
+
"min": 639
|
| 87 |
+
},
|
| 88 |
+
"unused_source_sites_per_sign": {
|
| 89 |
+
"max": 0,
|
| 90 |
+
"mean": 0.0,
|
| 91 |
+
"min": 0
|
| 92 |
+
},
|
| 93 |
+
"used_sites_per_sign": {
|
| 94 |
+
"max": 639,
|
| 95 |
+
"mean": 639.0,
|
| 96 |
+
"min": 639
|
| 97 |
+
}
|
| 98 |
+
},
|
| 99 |
+
"intervention": "inh_dropout",
|
| 100 |
+
"intervention_dose": 0.1,
|
| 101 |
+
"kind": "intervention",
|
| 102 |
+
"morphology_id": "specimen_314822529",
|
| 103 |
+
"morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_314822529/model",
|
| 104 |
+
"samples": 2,
|
| 105 |
+
"shard_index": 4052,
|
| 106 |
+
"teacher_balance_label": "axobench_ei_balanced"
|
| 107 |
+
}
|
minimal/interventions/inh_dropout_p10/specimen_314822529_intervention_pair_04053.json
ADDED
|
@@ -0,0 +1,107 @@
|
|
|
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|
|
|
|
|
|
|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "neuron",
|
| 3 |
+
"coreneuron_gpu": false,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 330.7355525259991,
|
| 6 |
+
"exc_gmax_scale": 0.859309649061239,
|
| 7 |
+
"generator": {
|
| 8 |
+
"allen_model_id": 497229124,
|
| 9 |
+
"allen_specimen_id": 314822529,
|
| 10 |
+
"axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um",
|
| 11 |
+
"backend": "neuron",
|
| 12 |
+
"biophysics_hoc_sha256": null,
|
| 13 |
+
"celsius": 34.0,
|
| 14 |
+
"code_revision": {
|
| 15 |
+
"commit": "112df5adf80562b47e92903f188426a5db59c0ab",
|
| 16 |
+
"dirty": false
|
| 17 |
+
},
|
| 18 |
+
"data_version": "v2",
|
| 19 |
+
"dt_ms": 0.025,
|
| 20 |
+
"exc_gmax_scale": 0.859309649061239,
|
| 21 |
+
"fit_parameters_sha256": "a8a5f14280f3a6bc1c614e972169f8068f6c8111701eb2cb42795bce9f09672e",
|
| 22 |
+
"inh_gmax_scale": 1.0,
|
| 23 |
+
"input_routing": "all_sites_by_type",
|
| 24 |
+
"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 25 |
+
"integrator": "fixed_step",
|
| 26 |
+
"junction_potential_mv": -14.0,
|
| 27 |
+
"mechanism_files": [
|
| 28 |
+
"CaDynamics.mod",
|
| 29 |
+
"Ca_HVA.mod",
|
| 30 |
+
"Ca_LVA.mod",
|
| 31 |
+
"DetAMPANMDA.mod",
|
| 32 |
+
"DetGABA.mod",
|
| 33 |
+
"Ih.mod",
|
| 34 |
+
"Im.mod",
|
| 35 |
+
"Im_v2.mod",
|
| 36 |
+
"K_P.mod",
|
| 37 |
+
"K_T.mod",
|
| 38 |
+
"Kd.mod",
|
| 39 |
+
"Kv2like.mod",
|
| 40 |
+
"Kv3_1.mod",
|
| 41 |
+
"NaTa.mod",
|
| 42 |
+
"NaTs.mod",
|
| 43 |
+
"NaV.mod",
|
| 44 |
+
"Nap.mod",
|
| 45 |
+
"SK.mod"
|
| 46 |
+
],
|
| 47 |
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"mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042",
|
| 48 |
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"morphology_sha256": "4c5f25ba8928cf0a742b375828b1b1c171cf1cacc96755099e9df5210277cb13",
|
| 49 |
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"neuron_version": "9.0.2",
|
| 50 |
+
"nseg_policy": "allen_fit",
|
| 51 |
+
"soma_samples_per_ms": 4,
|
| 52 |
+
"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 53 |
+
"synapse_delay_ms": 0.0,
|
| 54 |
+
"synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)",
|
| 55 |
+
"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 56 |
+
"teacher": "allen_all_active",
|
| 57 |
+
"template_hoc_sha256": null,
|
| 58 |
+
"v_init_mv": -90.0
|
| 59 |
+
},
|
| 60 |
+
"inh_gmax_scale": 1.0,
|
| 61 |
+
"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 62 |
+
"input_routing": {
|
| 63 |
+
"all_traces_identical": true,
|
| 64 |
+
"defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.",
|
| 65 |
+
"duplicated_source_sites_per_sign": {
|
| 66 |
+
"max": 0,
|
| 67 |
+
"mean": 0.0,
|
| 68 |
+
"min": 0
|
| 69 |
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},
|
| 70 |
+
"morphology_segments": {
|
| 71 |
+
"max": 220,
|
| 72 |
+
"mean": 220.0,
|
| 73 |
+
"min": 220
|
| 74 |
+
},
|
| 75 |
+
"n_traces": 2,
|
| 76 |
+
"policy": "source_site_preserving_normalized_arclength",
|
| 77 |
+
"source_sites_per_sign": {
|
| 78 |
+
"max": 639,
|
| 79 |
+
"mean": 639.0,
|
| 80 |
+
"min": 639
|
| 81 |
+
},
|
| 82 |
+
"status": "recorded",
|
| 83 |
+
"unique_source_sites_per_sign": {
|
| 84 |
+
"max": 639,
|
| 85 |
+
"mean": 639.0,
|
| 86 |
+
"min": 639
|
| 87 |
+
},
|
| 88 |
+
"unused_source_sites_per_sign": {
|
| 89 |
+
"max": 0,
|
| 90 |
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"mean": 0.0,
|
| 91 |
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"min": 0
|
| 92 |
+
},
|
| 93 |
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"used_sites_per_sign": {
|
| 94 |
+
"max": 639,
|
| 95 |
+
"mean": 639.0,
|
| 96 |
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"min": 639
|
| 97 |
+
}
|
| 98 |
+
},
|
| 99 |
+
"intervention": "inh_dropout",
|
| 100 |
+
"intervention_dose": 0.1,
|
| 101 |
+
"kind": "intervention",
|
| 102 |
+
"morphology_id": "specimen_314822529",
|
| 103 |
+
"morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_314822529/model",
|
| 104 |
+
"samples": 2,
|
| 105 |
+
"shard_index": 4053,
|
| 106 |
+
"teacher_balance_label": "axobench_ei_balanced"
|
| 107 |
+
}
|
minimal/interventions/inh_dropout_p10/specimen_314822529_intervention_pair_04054.json
ADDED
|
@@ -0,0 +1,107 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "neuron",
|
| 3 |
+
"coreneuron_gpu": false,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
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"elapsed_seconds": 330.1601192750022,
|
| 6 |
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"exc_gmax_scale": 0.859309649061239,
|
| 7 |
+
"generator": {
|
| 8 |
+
"allen_model_id": 497229124,
|
| 9 |
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"allen_specimen_id": 314822529,
|
| 10 |
+
"axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um",
|
| 11 |
+
"backend": "neuron",
|
| 12 |
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"biophysics_hoc_sha256": null,
|
| 13 |
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"celsius": 34.0,
|
| 14 |
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"code_revision": {
|
| 15 |
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"commit": "112df5adf80562b47e92903f188426a5db59c0ab",
|
| 16 |
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"dirty": false
|
| 17 |
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},
|
| 18 |
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"data_version": "v2",
|
| 19 |
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|
| 20 |
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|
| 21 |
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|
| 22 |
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|
| 23 |
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"input_routing": "all_sites_by_type",
|
| 24 |
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"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 25 |
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"integrator": "fixed_step",
|
| 26 |
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"junction_potential_mv": -14.0,
|
| 27 |
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"mechanism_files": [
|
| 28 |
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"CaDynamics.mod",
|
| 29 |
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"Ca_HVA.mod",
|
| 30 |
+
"Ca_LVA.mod",
|
| 31 |
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"DetAMPANMDA.mod",
|
| 32 |
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"DetGABA.mod",
|
| 33 |
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"Ih.mod",
|
| 34 |
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"Im.mod",
|
| 35 |
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"Im_v2.mod",
|
| 36 |
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"K_P.mod",
|
| 37 |
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"K_T.mod",
|
| 38 |
+
"Kd.mod",
|
| 39 |
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"Kv2like.mod",
|
| 40 |
+
"Kv3_1.mod",
|
| 41 |
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"NaTa.mod",
|
| 42 |
+
"NaTs.mod",
|
| 43 |
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"NaV.mod",
|
| 44 |
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"Nap.mod",
|
| 45 |
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"SK.mod"
|
| 46 |
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],
|
| 47 |
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"mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042",
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| 48 |
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"morphology_sha256": "4c5f25ba8928cf0a742b375828b1b1c171cf1cacc96755099e9df5210277cb13",
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| 49 |
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"neuron_version": "9.0.2",
|
| 50 |
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"nseg_policy": "allen_fit",
|
| 51 |
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"soma_samples_per_ms": 4,
|
| 52 |
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"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 53 |
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"synapse_delay_ms": 0.0,
|
| 54 |
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"synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)",
|
| 55 |
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"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 56 |
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"teacher": "allen_all_active",
|
| 57 |
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"template_hoc_sha256": null,
|
| 58 |
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"v_init_mv": -90.0
|
| 59 |
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},
|
| 60 |
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"inh_gmax_scale": 1.0,
|
| 61 |
+
"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 62 |
+
"input_routing": {
|
| 63 |
+
"all_traces_identical": true,
|
| 64 |
+
"defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.",
|
| 65 |
+
"duplicated_source_sites_per_sign": {
|
| 66 |
+
"max": 0,
|
| 67 |
+
"mean": 0.0,
|
| 68 |
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"min": 0
|
| 69 |
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},
|
| 70 |
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"morphology_segments": {
|
| 71 |
+
"max": 220,
|
| 72 |
+
"mean": 220.0,
|
| 73 |
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"min": 220
|
| 74 |
+
},
|
| 75 |
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"n_traces": 2,
|
| 76 |
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"policy": "source_site_preserving_normalized_arclength",
|
| 77 |
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"source_sites_per_sign": {
|
| 78 |
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"max": 639,
|
| 79 |
+
"mean": 639.0,
|
| 80 |
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"min": 639
|
| 81 |
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},
|
| 82 |
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"status": "recorded",
|
| 83 |
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"unique_source_sites_per_sign": {
|
| 84 |
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"max": 639,
|
| 85 |
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"mean": 639.0,
|
| 86 |
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"min": 639
|
| 87 |
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},
|
| 88 |
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"unused_source_sites_per_sign": {
|
| 89 |
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"max": 0,
|
| 90 |
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"mean": 0.0,
|
| 91 |
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"min": 0
|
| 92 |
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},
|
| 93 |
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"used_sites_per_sign": {
|
| 94 |
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"max": 639,
|
| 95 |
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"mean": 639.0,
|
| 96 |
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"min": 639
|
| 97 |
+
}
|
| 98 |
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},
|
| 99 |
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"intervention": "inh_dropout",
|
| 100 |
+
"intervention_dose": 0.1,
|
| 101 |
+
"kind": "intervention",
|
| 102 |
+
"morphology_id": "specimen_314822529",
|
| 103 |
+
"morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_314822529/model",
|
| 104 |
+
"samples": 2,
|
| 105 |
+
"shard_index": 4054,
|
| 106 |
+
"teacher_balance_label": "axobench_ei_balanced"
|
| 107 |
+
}
|
minimal/interventions/inh_dropout_p10/specimen_314822529_intervention_pair_04055.json
ADDED
|
@@ -0,0 +1,107 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
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"backend": "neuron",
|
| 3 |
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|
| 4 |
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|
| 5 |
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|
| 6 |
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|
| 7 |
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|
| 8 |
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|
| 9 |
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"allen_specimen_id": 314822529,
|
| 10 |
+
"axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um",
|
| 11 |
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"backend": "neuron",
|
| 12 |
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"biophysics_hoc_sha256": null,
|
| 13 |
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|
| 14 |
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|
| 15 |
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"commit": "112df5adf80562b47e92903f188426a5db59c0ab",
|
| 16 |
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"dirty": false
|
| 17 |
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},
|
| 18 |
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"data_version": "v2",
|
| 19 |
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|
| 20 |
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|
| 21 |
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"fit_parameters_sha256": "a8a5f14280f3a6bc1c614e972169f8068f6c8111701eb2cb42795bce9f09672e",
|
| 22 |
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"inh_gmax_scale": 1.0,
|
| 23 |
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"input_routing": "all_sites_by_type",
|
| 24 |
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"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 25 |
+
"integrator": "fixed_step",
|
| 26 |
+
"junction_potential_mv": -14.0,
|
| 27 |
+
"mechanism_files": [
|
| 28 |
+
"CaDynamics.mod",
|
| 29 |
+
"Ca_HVA.mod",
|
| 30 |
+
"Ca_LVA.mod",
|
| 31 |
+
"DetAMPANMDA.mod",
|
| 32 |
+
"DetGABA.mod",
|
| 33 |
+
"Ih.mod",
|
| 34 |
+
"Im.mod",
|
| 35 |
+
"Im_v2.mod",
|
| 36 |
+
"K_P.mod",
|
| 37 |
+
"K_T.mod",
|
| 38 |
+
"Kd.mod",
|
| 39 |
+
"Kv2like.mod",
|
| 40 |
+
"Kv3_1.mod",
|
| 41 |
+
"NaTa.mod",
|
| 42 |
+
"NaTs.mod",
|
| 43 |
+
"NaV.mod",
|
| 44 |
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"Nap.mod",
|
| 45 |
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"SK.mod"
|
| 46 |
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],
|
| 47 |
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"mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042",
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| 48 |
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| 49 |
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"neuron_version": "9.0.2",
|
| 50 |
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"nseg_policy": "allen_fit",
|
| 51 |
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"soma_samples_per_ms": 4,
|
| 52 |
+
"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 53 |
+
"synapse_delay_ms": 0.0,
|
| 54 |
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"synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)",
|
| 55 |
+
"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 56 |
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"teacher": "allen_all_active",
|
| 57 |
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"template_hoc_sha256": null,
|
| 58 |
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"v_init_mv": -90.0
|
| 59 |
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},
|
| 60 |
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"inh_gmax_scale": 1.0,
|
| 61 |
+
"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 62 |
+
"input_routing": {
|
| 63 |
+
"all_traces_identical": true,
|
| 64 |
+
"defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.",
|
| 65 |
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"duplicated_source_sites_per_sign": {
|
| 66 |
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"max": 0,
|
| 67 |
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"mean": 0.0,
|
| 68 |
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"min": 0
|
| 69 |
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},
|
| 70 |
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"morphology_segments": {
|
| 71 |
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"max": 220,
|
| 72 |
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"mean": 220.0,
|
| 73 |
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"min": 220
|
| 74 |
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},
|
| 75 |
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"n_traces": 2,
|
| 76 |
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"policy": "source_site_preserving_normalized_arclength",
|
| 77 |
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"source_sites_per_sign": {
|
| 78 |
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"max": 639,
|
| 79 |
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"mean": 639.0,
|
| 80 |
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"min": 639
|
| 81 |
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},
|
| 82 |
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"status": "recorded",
|
| 83 |
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"unique_source_sites_per_sign": {
|
| 84 |
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"max": 639,
|
| 85 |
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"mean": 639.0,
|
| 86 |
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"min": 639
|
| 87 |
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},
|
| 88 |
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"unused_source_sites_per_sign": {
|
| 89 |
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"max": 0,
|
| 90 |
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"mean": 0.0,
|
| 91 |
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"min": 0
|
| 92 |
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},
|
| 93 |
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"used_sites_per_sign": {
|
| 94 |
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"max": 639,
|
| 95 |
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"mean": 639.0,
|
| 96 |
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"min": 639
|
| 97 |
+
}
|
| 98 |
+
},
|
| 99 |
+
"intervention": "inh_dropout",
|
| 100 |
+
"intervention_dose": 0.1,
|
| 101 |
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"kind": "intervention",
|
| 102 |
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"morphology_id": "specimen_314822529",
|
| 103 |
+
"morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_314822529/model",
|
| 104 |
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"samples": 2,
|
| 105 |
+
"shard_index": 4055,
|
| 106 |
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"teacher_balance_label": "axobench_ei_balanced"
|
| 107 |
+
}
|
minimal/interventions/inh_dropout_p10/specimen_314822529_intervention_pair_04056.json
ADDED
|
@@ -0,0 +1,107 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "neuron",
|
| 3 |
+
"coreneuron_gpu": false,
|
| 4 |
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|
| 5 |
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|
| 6 |
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|
| 7 |
+
"generator": {
|
| 8 |
+
"allen_model_id": 497229124,
|
| 9 |
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"allen_specimen_id": 314822529,
|
| 10 |
+
"axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um",
|
| 11 |
+
"backend": "neuron",
|
| 12 |
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"biophysics_hoc_sha256": null,
|
| 13 |
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"celsius": 34.0,
|
| 14 |
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|
| 15 |
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"commit": "112df5adf80562b47e92903f188426a5db59c0ab",
|
| 16 |
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"dirty": false
|
| 17 |
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},
|
| 18 |
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"data_version": "v2",
|
| 19 |
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|
| 20 |
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|
| 21 |
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|
| 22 |
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|
| 23 |
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|
| 24 |
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|
| 25 |
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"integrator": "fixed_step",
|
| 26 |
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|
| 27 |
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"mechanism_files": [
|
| 28 |
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"CaDynamics.mod",
|
| 29 |
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"Ca_HVA.mod",
|
| 30 |
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"Ca_LVA.mod",
|
| 31 |
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"DetAMPANMDA.mod",
|
| 32 |
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"DetGABA.mod",
|
| 33 |
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"Ih.mod",
|
| 34 |
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"Im.mod",
|
| 35 |
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"Im_v2.mod",
|
| 36 |
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"K_P.mod",
|
| 37 |
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"K_T.mod",
|
| 38 |
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"Kd.mod",
|
| 39 |
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"Kv2like.mod",
|
| 40 |
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"Kv3_1.mod",
|
| 41 |
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"NaTa.mod",
|
| 42 |
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"NaTs.mod",
|
| 43 |
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"NaV.mod",
|
| 44 |
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"Nap.mod",
|
| 45 |
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"SK.mod"
|
| 46 |
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|
| 47 |
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| 49 |
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|
| 50 |
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|
| 51 |
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|
| 52 |
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"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 53 |
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"synapse_delay_ms": 0.0,
|
| 54 |
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"synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)",
|
| 55 |
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"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 56 |
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"teacher": "allen_all_active",
|
| 57 |
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"template_hoc_sha256": null,
|
| 58 |
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"v_init_mv": -90.0
|
| 59 |
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},
|
| 60 |
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"inh_gmax_scale": 1.0,
|
| 61 |
+
"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 62 |
+
"input_routing": {
|
| 63 |
+
"all_traces_identical": true,
|
| 64 |
+
"defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.",
|
| 65 |
+
"duplicated_source_sites_per_sign": {
|
| 66 |
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"max": 0,
|
| 67 |
+
"mean": 0.0,
|
| 68 |
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"min": 0
|
| 69 |
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},
|
| 70 |
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"morphology_segments": {
|
| 71 |
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"max": 220,
|
| 72 |
+
"mean": 220.0,
|
| 73 |
+
"min": 220
|
| 74 |
+
},
|
| 75 |
+
"n_traces": 2,
|
| 76 |
+
"policy": "source_site_preserving_normalized_arclength",
|
| 77 |
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"source_sites_per_sign": {
|
| 78 |
+
"max": 639,
|
| 79 |
+
"mean": 639.0,
|
| 80 |
+
"min": 639
|
| 81 |
+
},
|
| 82 |
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"status": "recorded",
|
| 83 |
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"unique_source_sites_per_sign": {
|
| 84 |
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"max": 639,
|
| 85 |
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"mean": 639.0,
|
| 86 |
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"min": 639
|
| 87 |
+
},
|
| 88 |
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"unused_source_sites_per_sign": {
|
| 89 |
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"max": 0,
|
| 90 |
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"mean": 0.0,
|
| 91 |
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"min": 0
|
| 92 |
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},
|
| 93 |
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"used_sites_per_sign": {
|
| 94 |
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"max": 639,
|
| 95 |
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"mean": 639.0,
|
| 96 |
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"min": 639
|
| 97 |
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}
|
| 98 |
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},
|
| 99 |
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"intervention": "inh_dropout",
|
| 100 |
+
"intervention_dose": 0.1,
|
| 101 |
+
"kind": "intervention",
|
| 102 |
+
"morphology_id": "specimen_314822529",
|
| 103 |
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"morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_314822529/model",
|
| 104 |
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"samples": 2,
|
| 105 |
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"shard_index": 4056,
|
| 106 |
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"teacher_balance_label": "axobench_ei_balanced"
|
| 107 |
+
}
|
minimal/interventions/inh_dropout_p10/specimen_314822529_intervention_pair_04057.json
ADDED
|
@@ -0,0 +1,107 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
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|
|
|
|
|
|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "neuron",
|
| 3 |
+
"coreneuron_gpu": false,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 332.08893895300207,
|
| 6 |
+
"exc_gmax_scale": 0.859309649061239,
|
| 7 |
+
"generator": {
|
| 8 |
+
"allen_model_id": 497229124,
|
| 9 |
+
"allen_specimen_id": 314822529,
|
| 10 |
+
"axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um",
|
| 11 |
+
"backend": "neuron",
|
| 12 |
+
"biophysics_hoc_sha256": null,
|
| 13 |
+
"celsius": 34.0,
|
| 14 |
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"code_revision": {
|
| 15 |
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"commit": "112df5adf80562b47e92903f188426a5db59c0ab",
|
| 16 |
+
"dirty": false
|
| 17 |
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},
|
| 18 |
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"data_version": "v2",
|
| 19 |
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"dt_ms": 0.025,
|
| 20 |
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"exc_gmax_scale": 0.859309649061239,
|
| 21 |
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"fit_parameters_sha256": "a8a5f14280f3a6bc1c614e972169f8068f6c8111701eb2cb42795bce9f09672e",
|
| 22 |
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"inh_gmax_scale": 1.0,
|
| 23 |
+
"input_routing": "all_sites_by_type",
|
| 24 |
+
"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 25 |
+
"integrator": "fixed_step",
|
| 26 |
+
"junction_potential_mv": -14.0,
|
| 27 |
+
"mechanism_files": [
|
| 28 |
+
"CaDynamics.mod",
|
| 29 |
+
"Ca_HVA.mod",
|
| 30 |
+
"Ca_LVA.mod",
|
| 31 |
+
"DetAMPANMDA.mod",
|
| 32 |
+
"DetGABA.mod",
|
| 33 |
+
"Ih.mod",
|
| 34 |
+
"Im.mod",
|
| 35 |
+
"Im_v2.mod",
|
| 36 |
+
"K_P.mod",
|
| 37 |
+
"K_T.mod",
|
| 38 |
+
"Kd.mod",
|
| 39 |
+
"Kv2like.mod",
|
| 40 |
+
"Kv3_1.mod",
|
| 41 |
+
"NaTa.mod",
|
| 42 |
+
"NaTs.mod",
|
| 43 |
+
"NaV.mod",
|
| 44 |
+
"Nap.mod",
|
| 45 |
+
"SK.mod"
|
| 46 |
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],
|
| 47 |
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"mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042",
|
| 48 |
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"morphology_sha256": "4c5f25ba8928cf0a742b375828b1b1c171cf1cacc96755099e9df5210277cb13",
|
| 49 |
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"neuron_version": "9.0.2",
|
| 50 |
+
"nseg_policy": "allen_fit",
|
| 51 |
+
"soma_samples_per_ms": 4,
|
| 52 |
+
"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 53 |
+
"synapse_delay_ms": 0.0,
|
| 54 |
+
"synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)",
|
| 55 |
+
"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 56 |
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"teacher": "allen_all_active",
|
| 57 |
+
"template_hoc_sha256": null,
|
| 58 |
+
"v_init_mv": -90.0
|
| 59 |
+
},
|
| 60 |
+
"inh_gmax_scale": 1.0,
|
| 61 |
+
"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 62 |
+
"input_routing": {
|
| 63 |
+
"all_traces_identical": true,
|
| 64 |
+
"defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.",
|
| 65 |
+
"duplicated_source_sites_per_sign": {
|
| 66 |
+
"max": 0,
|
| 67 |
+
"mean": 0.0,
|
| 68 |
+
"min": 0
|
| 69 |
+
},
|
| 70 |
+
"morphology_segments": {
|
| 71 |
+
"max": 220,
|
| 72 |
+
"mean": 220.0,
|
| 73 |
+
"min": 220
|
| 74 |
+
},
|
| 75 |
+
"n_traces": 2,
|
| 76 |
+
"policy": "source_site_preserving_normalized_arclength",
|
| 77 |
+
"source_sites_per_sign": {
|
| 78 |
+
"max": 639,
|
| 79 |
+
"mean": 639.0,
|
| 80 |
+
"min": 639
|
| 81 |
+
},
|
| 82 |
+
"status": "recorded",
|
| 83 |
+
"unique_source_sites_per_sign": {
|
| 84 |
+
"max": 639,
|
| 85 |
+
"mean": 639.0,
|
| 86 |
+
"min": 639
|
| 87 |
+
},
|
| 88 |
+
"unused_source_sites_per_sign": {
|
| 89 |
+
"max": 0,
|
| 90 |
+
"mean": 0.0,
|
| 91 |
+
"min": 0
|
| 92 |
+
},
|
| 93 |
+
"used_sites_per_sign": {
|
| 94 |
+
"max": 639,
|
| 95 |
+
"mean": 639.0,
|
| 96 |
+
"min": 639
|
| 97 |
+
}
|
| 98 |
+
},
|
| 99 |
+
"intervention": "inh_dropout",
|
| 100 |
+
"intervention_dose": 0.1,
|
| 101 |
+
"kind": "intervention",
|
| 102 |
+
"morphology_id": "specimen_314822529",
|
| 103 |
+
"morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_314822529/model",
|
| 104 |
+
"samples": 2,
|
| 105 |
+
"shard_index": 4057,
|
| 106 |
+
"teacher_balance_label": "axobench_ei_balanced"
|
| 107 |
+
}
|
minimal/interventions/inh_dropout_p10/specimen_314822529_intervention_pair_04058.json
ADDED
|
@@ -0,0 +1,107 @@
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|
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|
|
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|
|
|
|
|
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|
|
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|
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|
|
|
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|
|
|
|
|
|
|
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|
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|
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|
|
|
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|
|
|
|
|
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|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "neuron",
|
| 3 |
+
"coreneuron_gpu": false,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 330.9416208139992,
|
| 6 |
+
"exc_gmax_scale": 0.859309649061239,
|
| 7 |
+
"generator": {
|
| 8 |
+
"allen_model_id": 497229124,
|
| 9 |
+
"allen_specimen_id": 314822529,
|
| 10 |
+
"axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um",
|
| 11 |
+
"backend": "neuron",
|
| 12 |
+
"biophysics_hoc_sha256": null,
|
| 13 |
+
"celsius": 34.0,
|
| 14 |
+
"code_revision": {
|
| 15 |
+
"commit": "112df5adf80562b47e92903f188426a5db59c0ab",
|
| 16 |
+
"dirty": false
|
| 17 |
+
},
|
| 18 |
+
"data_version": "v2",
|
| 19 |
+
"dt_ms": 0.025,
|
| 20 |
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"exc_gmax_scale": 0.859309649061239,
|
| 21 |
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"fit_parameters_sha256": "a8a5f14280f3a6bc1c614e972169f8068f6c8111701eb2cb42795bce9f09672e",
|
| 22 |
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"inh_gmax_scale": 1.0,
|
| 23 |
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"input_routing": "all_sites_by_type",
|
| 24 |
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"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 25 |
+
"integrator": "fixed_step",
|
| 26 |
+
"junction_potential_mv": -14.0,
|
| 27 |
+
"mechanism_files": [
|
| 28 |
+
"CaDynamics.mod",
|
| 29 |
+
"Ca_HVA.mod",
|
| 30 |
+
"Ca_LVA.mod",
|
| 31 |
+
"DetAMPANMDA.mod",
|
| 32 |
+
"DetGABA.mod",
|
| 33 |
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"Ih.mod",
|
| 34 |
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"Im.mod",
|
| 35 |
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"Im_v2.mod",
|
| 36 |
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"K_P.mod",
|
| 37 |
+
"K_T.mod",
|
| 38 |
+
"Kd.mod",
|
| 39 |
+
"Kv2like.mod",
|
| 40 |
+
"Kv3_1.mod",
|
| 41 |
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"NaTa.mod",
|
| 42 |
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"NaTs.mod",
|
| 43 |
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"NaV.mod",
|
| 44 |
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"Nap.mod",
|
| 45 |
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"SK.mod"
|
| 46 |
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],
|
| 47 |
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"mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042",
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| 48 |
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| 49 |
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"neuron_version": "9.0.2",
|
| 50 |
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"nseg_policy": "allen_fit",
|
| 51 |
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"soma_samples_per_ms": 4,
|
| 52 |
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"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 53 |
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"synapse_delay_ms": 0.0,
|
| 54 |
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"synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)",
|
| 55 |
+
"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 56 |
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"teacher": "allen_all_active",
|
| 57 |
+
"template_hoc_sha256": null,
|
| 58 |
+
"v_init_mv": -90.0
|
| 59 |
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},
|
| 60 |
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"inh_gmax_scale": 1.0,
|
| 61 |
+
"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 62 |
+
"input_routing": {
|
| 63 |
+
"all_traces_identical": true,
|
| 64 |
+
"defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.",
|
| 65 |
+
"duplicated_source_sites_per_sign": {
|
| 66 |
+
"max": 0,
|
| 67 |
+
"mean": 0.0,
|
| 68 |
+
"min": 0
|
| 69 |
+
},
|
| 70 |
+
"morphology_segments": {
|
| 71 |
+
"max": 220,
|
| 72 |
+
"mean": 220.0,
|
| 73 |
+
"min": 220
|
| 74 |
+
},
|
| 75 |
+
"n_traces": 2,
|
| 76 |
+
"policy": "source_site_preserving_normalized_arclength",
|
| 77 |
+
"source_sites_per_sign": {
|
| 78 |
+
"max": 639,
|
| 79 |
+
"mean": 639.0,
|
| 80 |
+
"min": 639
|
| 81 |
+
},
|
| 82 |
+
"status": "recorded",
|
| 83 |
+
"unique_source_sites_per_sign": {
|
| 84 |
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"max": 639,
|
| 85 |
+
"mean": 639.0,
|
| 86 |
+
"min": 639
|
| 87 |
+
},
|
| 88 |
+
"unused_source_sites_per_sign": {
|
| 89 |
+
"max": 0,
|
| 90 |
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"mean": 0.0,
|
| 91 |
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"min": 0
|
| 92 |
+
},
|
| 93 |
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"used_sites_per_sign": {
|
| 94 |
+
"max": 639,
|
| 95 |
+
"mean": 639.0,
|
| 96 |
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"min": 639
|
| 97 |
+
}
|
| 98 |
+
},
|
| 99 |
+
"intervention": "inh_dropout",
|
| 100 |
+
"intervention_dose": 0.1,
|
| 101 |
+
"kind": "intervention",
|
| 102 |
+
"morphology_id": "specimen_314822529",
|
| 103 |
+
"morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_314822529/model",
|
| 104 |
+
"samples": 2,
|
| 105 |
+
"shard_index": 4058,
|
| 106 |
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"teacher_balance_label": "axobench_ei_balanced"
|
| 107 |
+
}
|
minimal/interventions/inh_dropout_p10/specimen_314822529_intervention_pair_04059.json
ADDED
|
@@ -0,0 +1,107 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
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|
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|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "neuron",
|
| 3 |
+
"coreneuron_gpu": false,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 328.79043075699883,
|
| 6 |
+
"exc_gmax_scale": 0.859309649061239,
|
| 7 |
+
"generator": {
|
| 8 |
+
"allen_model_id": 497229124,
|
| 9 |
+
"allen_specimen_id": 314822529,
|
| 10 |
+
"axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um",
|
| 11 |
+
"backend": "neuron",
|
| 12 |
+
"biophysics_hoc_sha256": null,
|
| 13 |
+
"celsius": 34.0,
|
| 14 |
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"code_revision": {
|
| 15 |
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"commit": "112df5adf80562b47e92903f188426a5db59c0ab",
|
| 16 |
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"dirty": false
|
| 17 |
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},
|
| 18 |
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"data_version": "v2",
|
| 19 |
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"dt_ms": 0.025,
|
| 20 |
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"exc_gmax_scale": 0.859309649061239,
|
| 21 |
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"fit_parameters_sha256": "a8a5f14280f3a6bc1c614e972169f8068f6c8111701eb2cb42795bce9f09672e",
|
| 22 |
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"inh_gmax_scale": 1.0,
|
| 23 |
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"input_routing": "all_sites_by_type",
|
| 24 |
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"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 25 |
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"integrator": "fixed_step",
|
| 26 |
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"junction_potential_mv": -14.0,
|
| 27 |
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"mechanism_files": [
|
| 28 |
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"CaDynamics.mod",
|
| 29 |
+
"Ca_HVA.mod",
|
| 30 |
+
"Ca_LVA.mod",
|
| 31 |
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"DetAMPANMDA.mod",
|
| 32 |
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"DetGABA.mod",
|
| 33 |
+
"Ih.mod",
|
| 34 |
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"Im.mod",
|
| 35 |
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"Im_v2.mod",
|
| 36 |
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"K_P.mod",
|
| 37 |
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"K_T.mod",
|
| 38 |
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"Kd.mod",
|
| 39 |
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"Kv2like.mod",
|
| 40 |
+
"Kv3_1.mod",
|
| 41 |
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"NaTa.mod",
|
| 42 |
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"NaTs.mod",
|
| 43 |
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"NaV.mod",
|
| 44 |
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"Nap.mod",
|
| 45 |
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"SK.mod"
|
| 46 |
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],
|
| 47 |
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"mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042",
|
| 48 |
+
"morphology_sha256": "4c5f25ba8928cf0a742b375828b1b1c171cf1cacc96755099e9df5210277cb13",
|
| 49 |
+
"neuron_version": "9.0.2",
|
| 50 |
+
"nseg_policy": "allen_fit",
|
| 51 |
+
"soma_samples_per_ms": 4,
|
| 52 |
+
"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 53 |
+
"synapse_delay_ms": 0.0,
|
| 54 |
+
"synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)",
|
| 55 |
+
"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 56 |
+
"teacher": "allen_all_active",
|
| 57 |
+
"template_hoc_sha256": null,
|
| 58 |
+
"v_init_mv": -90.0
|
| 59 |
+
},
|
| 60 |
+
"inh_gmax_scale": 1.0,
|
| 61 |
+
"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 62 |
+
"input_routing": {
|
| 63 |
+
"all_traces_identical": true,
|
| 64 |
+
"defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.",
|
| 65 |
+
"duplicated_source_sites_per_sign": {
|
| 66 |
+
"max": 0,
|
| 67 |
+
"mean": 0.0,
|
| 68 |
+
"min": 0
|
| 69 |
+
},
|
| 70 |
+
"morphology_segments": {
|
| 71 |
+
"max": 220,
|
| 72 |
+
"mean": 220.0,
|
| 73 |
+
"min": 220
|
| 74 |
+
},
|
| 75 |
+
"n_traces": 2,
|
| 76 |
+
"policy": "source_site_preserving_normalized_arclength",
|
| 77 |
+
"source_sites_per_sign": {
|
| 78 |
+
"max": 639,
|
| 79 |
+
"mean": 639.0,
|
| 80 |
+
"min": 639
|
| 81 |
+
},
|
| 82 |
+
"status": "recorded",
|
| 83 |
+
"unique_source_sites_per_sign": {
|
| 84 |
+
"max": 639,
|
| 85 |
+
"mean": 639.0,
|
| 86 |
+
"min": 639
|
| 87 |
+
},
|
| 88 |
+
"unused_source_sites_per_sign": {
|
| 89 |
+
"max": 0,
|
| 90 |
+
"mean": 0.0,
|
| 91 |
+
"min": 0
|
| 92 |
+
},
|
| 93 |
+
"used_sites_per_sign": {
|
| 94 |
+
"max": 639,
|
| 95 |
+
"mean": 639.0,
|
| 96 |
+
"min": 639
|
| 97 |
+
}
|
| 98 |
+
},
|
| 99 |
+
"intervention": "inh_dropout",
|
| 100 |
+
"intervention_dose": 0.1,
|
| 101 |
+
"kind": "intervention",
|
| 102 |
+
"morphology_id": "specimen_314822529",
|
| 103 |
+
"morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_314822529/model",
|
| 104 |
+
"samples": 2,
|
| 105 |
+
"shard_index": 4059,
|
| 106 |
+
"teacher_balance_label": "axobench_ei_balanced"
|
| 107 |
+
}
|
minimal/interventions/inh_dropout_p10/specimen_314822529_intervention_pair_04060.json
ADDED
|
@@ -0,0 +1,107 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "neuron",
|
| 3 |
+
"coreneuron_gpu": false,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 332.3459374289996,
|
| 6 |
+
"exc_gmax_scale": 0.859309649061239,
|
| 7 |
+
"generator": {
|
| 8 |
+
"allen_model_id": 497229124,
|
| 9 |
+
"allen_specimen_id": 314822529,
|
| 10 |
+
"axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um",
|
| 11 |
+
"backend": "neuron",
|
| 12 |
+
"biophysics_hoc_sha256": null,
|
| 13 |
+
"celsius": 34.0,
|
| 14 |
+
"code_revision": {
|
| 15 |
+
"commit": "112df5adf80562b47e92903f188426a5db59c0ab",
|
| 16 |
+
"dirty": false
|
| 17 |
+
},
|
| 18 |
+
"data_version": "v2",
|
| 19 |
+
"dt_ms": 0.025,
|
| 20 |
+
"exc_gmax_scale": 0.859309649061239,
|
| 21 |
+
"fit_parameters_sha256": "a8a5f14280f3a6bc1c614e972169f8068f6c8111701eb2cb42795bce9f09672e",
|
| 22 |
+
"inh_gmax_scale": 1.0,
|
| 23 |
+
"input_routing": "all_sites_by_type",
|
| 24 |
+
"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 25 |
+
"integrator": "fixed_step",
|
| 26 |
+
"junction_potential_mv": -14.0,
|
| 27 |
+
"mechanism_files": [
|
| 28 |
+
"CaDynamics.mod",
|
| 29 |
+
"Ca_HVA.mod",
|
| 30 |
+
"Ca_LVA.mod",
|
| 31 |
+
"DetAMPANMDA.mod",
|
| 32 |
+
"DetGABA.mod",
|
| 33 |
+
"Ih.mod",
|
| 34 |
+
"Im.mod",
|
| 35 |
+
"Im_v2.mod",
|
| 36 |
+
"K_P.mod",
|
| 37 |
+
"K_T.mod",
|
| 38 |
+
"Kd.mod",
|
| 39 |
+
"Kv2like.mod",
|
| 40 |
+
"Kv3_1.mod",
|
| 41 |
+
"NaTa.mod",
|
| 42 |
+
"NaTs.mod",
|
| 43 |
+
"NaV.mod",
|
| 44 |
+
"Nap.mod",
|
| 45 |
+
"SK.mod"
|
| 46 |
+
],
|
| 47 |
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"mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042",
|
| 48 |
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"morphology_sha256": "4c5f25ba8928cf0a742b375828b1b1c171cf1cacc96755099e9df5210277cb13",
|
| 49 |
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"neuron_version": "9.0.2",
|
| 50 |
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"nseg_policy": "allen_fit",
|
| 51 |
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"soma_samples_per_ms": 4,
|
| 52 |
+
"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 53 |
+
"synapse_delay_ms": 0.0,
|
| 54 |
+
"synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)",
|
| 55 |
+
"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 56 |
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"teacher": "allen_all_active",
|
| 57 |
+
"template_hoc_sha256": null,
|
| 58 |
+
"v_init_mv": -90.0
|
| 59 |
+
},
|
| 60 |
+
"inh_gmax_scale": 1.0,
|
| 61 |
+
"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 62 |
+
"input_routing": {
|
| 63 |
+
"all_traces_identical": true,
|
| 64 |
+
"defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.",
|
| 65 |
+
"duplicated_source_sites_per_sign": {
|
| 66 |
+
"max": 0,
|
| 67 |
+
"mean": 0.0,
|
| 68 |
+
"min": 0
|
| 69 |
+
},
|
| 70 |
+
"morphology_segments": {
|
| 71 |
+
"max": 220,
|
| 72 |
+
"mean": 220.0,
|
| 73 |
+
"min": 220
|
| 74 |
+
},
|
| 75 |
+
"n_traces": 2,
|
| 76 |
+
"policy": "source_site_preserving_normalized_arclength",
|
| 77 |
+
"source_sites_per_sign": {
|
| 78 |
+
"max": 639,
|
| 79 |
+
"mean": 639.0,
|
| 80 |
+
"min": 639
|
| 81 |
+
},
|
| 82 |
+
"status": "recorded",
|
| 83 |
+
"unique_source_sites_per_sign": {
|
| 84 |
+
"max": 639,
|
| 85 |
+
"mean": 639.0,
|
| 86 |
+
"min": 639
|
| 87 |
+
},
|
| 88 |
+
"unused_source_sites_per_sign": {
|
| 89 |
+
"max": 0,
|
| 90 |
+
"mean": 0.0,
|
| 91 |
+
"min": 0
|
| 92 |
+
},
|
| 93 |
+
"used_sites_per_sign": {
|
| 94 |
+
"max": 639,
|
| 95 |
+
"mean": 639.0,
|
| 96 |
+
"min": 639
|
| 97 |
+
}
|
| 98 |
+
},
|
| 99 |
+
"intervention": "inh_dropout",
|
| 100 |
+
"intervention_dose": 0.1,
|
| 101 |
+
"kind": "intervention",
|
| 102 |
+
"morphology_id": "specimen_314822529",
|
| 103 |
+
"morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_314822529/model",
|
| 104 |
+
"samples": 2,
|
| 105 |
+
"shard_index": 4060,
|
| 106 |
+
"teacher_balance_label": "axobench_ei_balanced"
|
| 107 |
+
}
|
minimal/interventions/inh_dropout_p10/specimen_314822529_intervention_pair_04061.json
ADDED
|
@@ -0,0 +1,107 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "neuron",
|
| 3 |
+
"coreneuron_gpu": false,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
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"elapsed_seconds": 334.0179148719981,
|
| 6 |
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"exc_gmax_scale": 0.859309649061239,
|
| 7 |
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"generator": {
|
| 8 |
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"allen_model_id": 497229124,
|
| 9 |
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"allen_specimen_id": 314822529,
|
| 10 |
+
"axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um",
|
| 11 |
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"backend": "neuron",
|
| 12 |
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"biophysics_hoc_sha256": null,
|
| 13 |
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"celsius": 34.0,
|
| 14 |
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"code_revision": {
|
| 15 |
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"commit": "112df5adf80562b47e92903f188426a5db59c0ab",
|
| 16 |
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"dirty": false
|
| 17 |
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},
|
| 18 |
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"data_version": "v2",
|
| 19 |
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|
| 20 |
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|
| 21 |
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| 22 |
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|
| 23 |
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"input_routing": "all_sites_by_type",
|
| 24 |
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"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 25 |
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"integrator": "fixed_step",
|
| 26 |
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"junction_potential_mv": -14.0,
|
| 27 |
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"mechanism_files": [
|
| 28 |
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"CaDynamics.mod",
|
| 29 |
+
"Ca_HVA.mod",
|
| 30 |
+
"Ca_LVA.mod",
|
| 31 |
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"DetAMPANMDA.mod",
|
| 32 |
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"DetGABA.mod",
|
| 33 |
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"Ih.mod",
|
| 34 |
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"Im.mod",
|
| 35 |
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"Im_v2.mod",
|
| 36 |
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"K_P.mod",
|
| 37 |
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"K_T.mod",
|
| 38 |
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"Kd.mod",
|
| 39 |
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"Kv2like.mod",
|
| 40 |
+
"Kv3_1.mod",
|
| 41 |
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"NaTa.mod",
|
| 42 |
+
"NaTs.mod",
|
| 43 |
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"NaV.mod",
|
| 44 |
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"Nap.mod",
|
| 45 |
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"SK.mod"
|
| 46 |
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],
|
| 47 |
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"mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042",
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| 48 |
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"morphology_sha256": "4c5f25ba8928cf0a742b375828b1b1c171cf1cacc96755099e9df5210277cb13",
|
| 49 |
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"neuron_version": "9.0.2",
|
| 50 |
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"nseg_policy": "allen_fit",
|
| 51 |
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"soma_samples_per_ms": 4,
|
| 52 |
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"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 53 |
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"synapse_delay_ms": 0.0,
|
| 54 |
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"synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)",
|
| 55 |
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"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 56 |
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"teacher": "allen_all_active",
|
| 57 |
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"template_hoc_sha256": null,
|
| 58 |
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"v_init_mv": -90.0
|
| 59 |
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},
|
| 60 |
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"inh_gmax_scale": 1.0,
|
| 61 |
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"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 62 |
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"input_routing": {
|
| 63 |
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"all_traces_identical": true,
|
| 64 |
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"defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.",
|
| 65 |
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"duplicated_source_sites_per_sign": {
|
| 66 |
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"max": 0,
|
| 67 |
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"mean": 0.0,
|
| 68 |
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"min": 0
|
| 69 |
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},
|
| 70 |
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"morphology_segments": {
|
| 71 |
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"max": 220,
|
| 72 |
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"mean": 220.0,
|
| 73 |
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"min": 220
|
| 74 |
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},
|
| 75 |
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"n_traces": 2,
|
| 76 |
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"policy": "source_site_preserving_normalized_arclength",
|
| 77 |
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"source_sites_per_sign": {
|
| 78 |
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|
| 79 |
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"mean": 639.0,
|
| 80 |
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"min": 639
|
| 81 |
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},
|
| 82 |
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"status": "recorded",
|
| 83 |
+
"unique_source_sites_per_sign": {
|
| 84 |
+
"max": 639,
|
| 85 |
+
"mean": 639.0,
|
| 86 |
+
"min": 639
|
| 87 |
+
},
|
| 88 |
+
"unused_source_sites_per_sign": {
|
| 89 |
+
"max": 0,
|
| 90 |
+
"mean": 0.0,
|
| 91 |
+
"min": 0
|
| 92 |
+
},
|
| 93 |
+
"used_sites_per_sign": {
|
| 94 |
+
"max": 639,
|
| 95 |
+
"mean": 639.0,
|
| 96 |
+
"min": 639
|
| 97 |
+
}
|
| 98 |
+
},
|
| 99 |
+
"intervention": "inh_dropout",
|
| 100 |
+
"intervention_dose": 0.1,
|
| 101 |
+
"kind": "intervention",
|
| 102 |
+
"morphology_id": "specimen_314822529",
|
| 103 |
+
"morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_314822529/model",
|
| 104 |
+
"samples": 2,
|
| 105 |
+
"shard_index": 4061,
|
| 106 |
+
"teacher_balance_label": "axobench_ei_balanced"
|
| 107 |
+
}
|
minimal/interventions/inh_dropout_p10/specimen_314822529_intervention_pair_04062.json
ADDED
|
@@ -0,0 +1,107 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "neuron",
|
| 3 |
+
"coreneuron_gpu": false,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
+
"elapsed_seconds": 332.75475851399824,
|
| 6 |
+
"exc_gmax_scale": 0.859309649061239,
|
| 7 |
+
"generator": {
|
| 8 |
+
"allen_model_id": 497229124,
|
| 9 |
+
"allen_specimen_id": 314822529,
|
| 10 |
+
"axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um",
|
| 11 |
+
"backend": "neuron",
|
| 12 |
+
"biophysics_hoc_sha256": null,
|
| 13 |
+
"celsius": 34.0,
|
| 14 |
+
"code_revision": {
|
| 15 |
+
"commit": "112df5adf80562b47e92903f188426a5db59c0ab",
|
| 16 |
+
"dirty": false
|
| 17 |
+
},
|
| 18 |
+
"data_version": "v2",
|
| 19 |
+
"dt_ms": 0.025,
|
| 20 |
+
"exc_gmax_scale": 0.859309649061239,
|
| 21 |
+
"fit_parameters_sha256": "a8a5f14280f3a6bc1c614e972169f8068f6c8111701eb2cb42795bce9f09672e",
|
| 22 |
+
"inh_gmax_scale": 1.0,
|
| 23 |
+
"input_routing": "all_sites_by_type",
|
| 24 |
+
"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 25 |
+
"integrator": "fixed_step",
|
| 26 |
+
"junction_potential_mv": -14.0,
|
| 27 |
+
"mechanism_files": [
|
| 28 |
+
"CaDynamics.mod",
|
| 29 |
+
"Ca_HVA.mod",
|
| 30 |
+
"Ca_LVA.mod",
|
| 31 |
+
"DetAMPANMDA.mod",
|
| 32 |
+
"DetGABA.mod",
|
| 33 |
+
"Ih.mod",
|
| 34 |
+
"Im.mod",
|
| 35 |
+
"Im_v2.mod",
|
| 36 |
+
"K_P.mod",
|
| 37 |
+
"K_T.mod",
|
| 38 |
+
"Kd.mod",
|
| 39 |
+
"Kv2like.mod",
|
| 40 |
+
"Kv3_1.mod",
|
| 41 |
+
"NaTa.mod",
|
| 42 |
+
"NaTs.mod",
|
| 43 |
+
"NaV.mod",
|
| 44 |
+
"Nap.mod",
|
| 45 |
+
"SK.mod"
|
| 46 |
+
],
|
| 47 |
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"mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042",
|
| 48 |
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"morphology_sha256": "4c5f25ba8928cf0a742b375828b1b1c171cf1cacc96755099e9df5210277cb13",
|
| 49 |
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"neuron_version": "9.0.2",
|
| 50 |
+
"nseg_policy": "allen_fit",
|
| 51 |
+
"soma_samples_per_ms": 4,
|
| 52 |
+
"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 53 |
+
"synapse_delay_ms": 0.0,
|
| 54 |
+
"synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)",
|
| 55 |
+
"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 56 |
+
"teacher": "allen_all_active",
|
| 57 |
+
"template_hoc_sha256": null,
|
| 58 |
+
"v_init_mv": -90.0
|
| 59 |
+
},
|
| 60 |
+
"inh_gmax_scale": 1.0,
|
| 61 |
+
"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 62 |
+
"input_routing": {
|
| 63 |
+
"all_traces_identical": true,
|
| 64 |
+
"defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.",
|
| 65 |
+
"duplicated_source_sites_per_sign": {
|
| 66 |
+
"max": 0,
|
| 67 |
+
"mean": 0.0,
|
| 68 |
+
"min": 0
|
| 69 |
+
},
|
| 70 |
+
"morphology_segments": {
|
| 71 |
+
"max": 220,
|
| 72 |
+
"mean": 220.0,
|
| 73 |
+
"min": 220
|
| 74 |
+
},
|
| 75 |
+
"n_traces": 2,
|
| 76 |
+
"policy": "source_site_preserving_normalized_arclength",
|
| 77 |
+
"source_sites_per_sign": {
|
| 78 |
+
"max": 639,
|
| 79 |
+
"mean": 639.0,
|
| 80 |
+
"min": 639
|
| 81 |
+
},
|
| 82 |
+
"status": "recorded",
|
| 83 |
+
"unique_source_sites_per_sign": {
|
| 84 |
+
"max": 639,
|
| 85 |
+
"mean": 639.0,
|
| 86 |
+
"min": 639
|
| 87 |
+
},
|
| 88 |
+
"unused_source_sites_per_sign": {
|
| 89 |
+
"max": 0,
|
| 90 |
+
"mean": 0.0,
|
| 91 |
+
"min": 0
|
| 92 |
+
},
|
| 93 |
+
"used_sites_per_sign": {
|
| 94 |
+
"max": 639,
|
| 95 |
+
"mean": 639.0,
|
| 96 |
+
"min": 639
|
| 97 |
+
}
|
| 98 |
+
},
|
| 99 |
+
"intervention": "inh_dropout",
|
| 100 |
+
"intervention_dose": 0.1,
|
| 101 |
+
"kind": "intervention",
|
| 102 |
+
"morphology_id": "specimen_314822529",
|
| 103 |
+
"morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_314822529/model",
|
| 104 |
+
"samples": 2,
|
| 105 |
+
"shard_index": 4062,
|
| 106 |
+
"teacher_balance_label": "axobench_ei_balanced"
|
| 107 |
+
}
|
minimal/interventions/inh_dropout_p10/specimen_314822529_intervention_pair_04063.json
ADDED
|
@@ -0,0 +1,107 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "neuron",
|
| 3 |
+
"coreneuron_gpu": false,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
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"elapsed_seconds": 329.43517222800074,
|
| 6 |
+
"exc_gmax_scale": 0.859309649061239,
|
| 7 |
+
"generator": {
|
| 8 |
+
"allen_model_id": 497229124,
|
| 9 |
+
"allen_specimen_id": 314822529,
|
| 10 |
+
"axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um",
|
| 11 |
+
"backend": "neuron",
|
| 12 |
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"biophysics_hoc_sha256": null,
|
| 13 |
+
"celsius": 34.0,
|
| 14 |
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"code_revision": {
|
| 15 |
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"commit": "112df5adf80562b47e92903f188426a5db59c0ab",
|
| 16 |
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"dirty": false
|
| 17 |
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},
|
| 18 |
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"data_version": "v2",
|
| 19 |
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"dt_ms": 0.025,
|
| 20 |
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"exc_gmax_scale": 0.859309649061239,
|
| 21 |
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| 22 |
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|
| 23 |
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"input_routing": "all_sites_by_type",
|
| 24 |
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"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 25 |
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"integrator": "fixed_step",
|
| 26 |
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"junction_potential_mv": -14.0,
|
| 27 |
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"mechanism_files": [
|
| 28 |
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"CaDynamics.mod",
|
| 29 |
+
"Ca_HVA.mod",
|
| 30 |
+
"Ca_LVA.mod",
|
| 31 |
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"DetAMPANMDA.mod",
|
| 32 |
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"DetGABA.mod",
|
| 33 |
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"Ih.mod",
|
| 34 |
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"Im.mod",
|
| 35 |
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"Im_v2.mod",
|
| 36 |
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"K_P.mod",
|
| 37 |
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"K_T.mod",
|
| 38 |
+
"Kd.mod",
|
| 39 |
+
"Kv2like.mod",
|
| 40 |
+
"Kv3_1.mod",
|
| 41 |
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"NaTa.mod",
|
| 42 |
+
"NaTs.mod",
|
| 43 |
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"NaV.mod",
|
| 44 |
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"Nap.mod",
|
| 45 |
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"SK.mod"
|
| 46 |
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],
|
| 47 |
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"mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042",
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| 48 |
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"morphology_sha256": "4c5f25ba8928cf0a742b375828b1b1c171cf1cacc96755099e9df5210277cb13",
|
| 49 |
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"neuron_version": "9.0.2",
|
| 50 |
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"nseg_policy": "allen_fit",
|
| 51 |
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"soma_samples_per_ms": 4,
|
| 52 |
+
"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 53 |
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"synapse_delay_ms": 0.0,
|
| 54 |
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"synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)",
|
| 55 |
+
"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 56 |
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"teacher": "allen_all_active",
|
| 57 |
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"template_hoc_sha256": null,
|
| 58 |
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"v_init_mv": -90.0
|
| 59 |
+
},
|
| 60 |
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"inh_gmax_scale": 1.0,
|
| 61 |
+
"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 62 |
+
"input_routing": {
|
| 63 |
+
"all_traces_identical": true,
|
| 64 |
+
"defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.",
|
| 65 |
+
"duplicated_source_sites_per_sign": {
|
| 66 |
+
"max": 0,
|
| 67 |
+
"mean": 0.0,
|
| 68 |
+
"min": 0
|
| 69 |
+
},
|
| 70 |
+
"morphology_segments": {
|
| 71 |
+
"max": 220,
|
| 72 |
+
"mean": 220.0,
|
| 73 |
+
"min": 220
|
| 74 |
+
},
|
| 75 |
+
"n_traces": 2,
|
| 76 |
+
"policy": "source_site_preserving_normalized_arclength",
|
| 77 |
+
"source_sites_per_sign": {
|
| 78 |
+
"max": 639,
|
| 79 |
+
"mean": 639.0,
|
| 80 |
+
"min": 639
|
| 81 |
+
},
|
| 82 |
+
"status": "recorded",
|
| 83 |
+
"unique_source_sites_per_sign": {
|
| 84 |
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"max": 639,
|
| 85 |
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"mean": 639.0,
|
| 86 |
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"min": 639
|
| 87 |
+
},
|
| 88 |
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"unused_source_sites_per_sign": {
|
| 89 |
+
"max": 0,
|
| 90 |
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"mean": 0.0,
|
| 91 |
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"min": 0
|
| 92 |
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},
|
| 93 |
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"used_sites_per_sign": {
|
| 94 |
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"max": 639,
|
| 95 |
+
"mean": 639.0,
|
| 96 |
+
"min": 639
|
| 97 |
+
}
|
| 98 |
+
},
|
| 99 |
+
"intervention": "inh_dropout",
|
| 100 |
+
"intervention_dose": 0.1,
|
| 101 |
+
"kind": "intervention",
|
| 102 |
+
"morphology_id": "specimen_314822529",
|
| 103 |
+
"morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_314822529/model",
|
| 104 |
+
"samples": 2,
|
| 105 |
+
"shard_index": 4063,
|
| 106 |
+
"teacher_balance_label": "axobench_ei_balanced"
|
| 107 |
+
}
|
minimal/interventions/inh_dropout_p10/specimen_314822529_intervention_pair_04064.json
ADDED
|
@@ -0,0 +1,107 @@
|
|
|
|
|
|
|
|
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|
|
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|
|
|
|
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|
|
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|
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|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
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"backend": "neuron",
|
| 3 |
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|
| 4 |
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|
| 5 |
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|
| 6 |
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|
| 7 |
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|
| 8 |
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|
| 9 |
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|
| 10 |
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"axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um",
|
| 11 |
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"backend": "neuron",
|
| 12 |
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|
| 13 |
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|
| 14 |
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|
| 15 |
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| 16 |
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|
| 17 |
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|
| 18 |
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|
| 19 |
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|
| 20 |
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|
| 21 |
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|
| 22 |
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|
| 23 |
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"input_routing": "all_sites_by_type",
|
| 24 |
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"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 25 |
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"integrator": "fixed_step",
|
| 26 |
+
"junction_potential_mv": -14.0,
|
| 27 |
+
"mechanism_files": [
|
| 28 |
+
"CaDynamics.mod",
|
| 29 |
+
"Ca_HVA.mod",
|
| 30 |
+
"Ca_LVA.mod",
|
| 31 |
+
"DetAMPANMDA.mod",
|
| 32 |
+
"DetGABA.mod",
|
| 33 |
+
"Ih.mod",
|
| 34 |
+
"Im.mod",
|
| 35 |
+
"Im_v2.mod",
|
| 36 |
+
"K_P.mod",
|
| 37 |
+
"K_T.mod",
|
| 38 |
+
"Kd.mod",
|
| 39 |
+
"Kv2like.mod",
|
| 40 |
+
"Kv3_1.mod",
|
| 41 |
+
"NaTa.mod",
|
| 42 |
+
"NaTs.mod",
|
| 43 |
+
"NaV.mod",
|
| 44 |
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"Nap.mod",
|
| 45 |
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"SK.mod"
|
| 46 |
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],
|
| 47 |
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"mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042",
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| 48 |
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| 49 |
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|
| 50 |
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"nseg_policy": "allen_fit",
|
| 51 |
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"soma_samples_per_ms": 4,
|
| 52 |
+
"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 53 |
+
"synapse_delay_ms": 0.0,
|
| 54 |
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"synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)",
|
| 55 |
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"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 56 |
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"teacher": "allen_all_active",
|
| 57 |
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|
| 58 |
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"v_init_mv": -90.0
|
| 59 |
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},
|
| 60 |
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"inh_gmax_scale": 1.0,
|
| 61 |
+
"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 62 |
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"input_routing": {
|
| 63 |
+
"all_traces_identical": true,
|
| 64 |
+
"defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.",
|
| 65 |
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"duplicated_source_sites_per_sign": {
|
| 66 |
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"max": 0,
|
| 67 |
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"mean": 0.0,
|
| 68 |
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"min": 0
|
| 69 |
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},
|
| 70 |
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"morphology_segments": {
|
| 71 |
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"max": 220,
|
| 72 |
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"mean": 220.0,
|
| 73 |
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"min": 220
|
| 74 |
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},
|
| 75 |
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"n_traces": 2,
|
| 76 |
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"policy": "source_site_preserving_normalized_arclength",
|
| 77 |
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"source_sites_per_sign": {
|
| 78 |
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"max": 639,
|
| 79 |
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"mean": 639.0,
|
| 80 |
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"min": 639
|
| 81 |
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},
|
| 82 |
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"status": "recorded",
|
| 83 |
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"unique_source_sites_per_sign": {
|
| 84 |
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"max": 639,
|
| 85 |
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"mean": 639.0,
|
| 86 |
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"min": 639
|
| 87 |
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},
|
| 88 |
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"unused_source_sites_per_sign": {
|
| 89 |
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"max": 0,
|
| 90 |
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"mean": 0.0,
|
| 91 |
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"min": 0
|
| 92 |
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},
|
| 93 |
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"used_sites_per_sign": {
|
| 94 |
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"max": 639,
|
| 95 |
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"mean": 639.0,
|
| 96 |
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"min": 639
|
| 97 |
+
}
|
| 98 |
+
},
|
| 99 |
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"intervention": "inh_dropout",
|
| 100 |
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"intervention_dose": 0.1,
|
| 101 |
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"kind": "intervention",
|
| 102 |
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"morphology_id": "specimen_314822529",
|
| 103 |
+
"morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_314822529/model",
|
| 104 |
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"samples": 2,
|
| 105 |
+
"shard_index": 4064,
|
| 106 |
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"teacher_balance_label": "axobench_ei_balanced"
|
| 107 |
+
}
|
minimal/interventions/inh_dropout_p10/specimen_314822529_intervention_pair_04065.json
ADDED
|
@@ -0,0 +1,107 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "neuron",
|
| 3 |
+
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|
| 4 |
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|
| 5 |
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|
| 6 |
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|
| 7 |
+
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|
| 8 |
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"allen_model_id": 497229124,
|
| 9 |
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"allen_specimen_id": 314822529,
|
| 10 |
+
"axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um",
|
| 11 |
+
"backend": "neuron",
|
| 12 |
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"biophysics_hoc_sha256": null,
|
| 13 |
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"celsius": 34.0,
|
| 14 |
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|
| 15 |
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|
| 16 |
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"dirty": false
|
| 17 |
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},
|
| 18 |
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"data_version": "v2",
|
| 19 |
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|
| 20 |
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|
| 21 |
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|
| 22 |
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|
| 23 |
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|
| 24 |
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|
| 25 |
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"integrator": "fixed_step",
|
| 26 |
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|
| 27 |
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"mechanism_files": [
|
| 28 |
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"CaDynamics.mod",
|
| 29 |
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"Ca_HVA.mod",
|
| 30 |
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"Ca_LVA.mod",
|
| 31 |
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"DetAMPANMDA.mod",
|
| 32 |
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"DetGABA.mod",
|
| 33 |
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"Ih.mod",
|
| 34 |
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"Im.mod",
|
| 35 |
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"Im_v2.mod",
|
| 36 |
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"K_P.mod",
|
| 37 |
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"K_T.mod",
|
| 38 |
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"Kd.mod",
|
| 39 |
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"Kv2like.mod",
|
| 40 |
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"Kv3_1.mod",
|
| 41 |
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"NaTa.mod",
|
| 42 |
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"NaTs.mod",
|
| 43 |
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"NaV.mod",
|
| 44 |
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"Nap.mod",
|
| 45 |
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|
| 46 |
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| 47 |
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|
| 50 |
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|
| 51 |
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|
| 52 |
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"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 53 |
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"synapse_delay_ms": 0.0,
|
| 54 |
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"synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)",
|
| 55 |
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"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 56 |
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"teacher": "allen_all_active",
|
| 57 |
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|
| 58 |
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"v_init_mv": -90.0
|
| 59 |
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},
|
| 60 |
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"inh_gmax_scale": 1.0,
|
| 61 |
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"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 62 |
+
"input_routing": {
|
| 63 |
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"all_traces_identical": true,
|
| 64 |
+
"defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.",
|
| 65 |
+
"duplicated_source_sites_per_sign": {
|
| 66 |
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"max": 0,
|
| 67 |
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"mean": 0.0,
|
| 68 |
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"min": 0
|
| 69 |
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},
|
| 70 |
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"morphology_segments": {
|
| 71 |
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"max": 220,
|
| 72 |
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"mean": 220.0,
|
| 73 |
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"min": 220
|
| 74 |
+
},
|
| 75 |
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"n_traces": 2,
|
| 76 |
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"policy": "source_site_preserving_normalized_arclength",
|
| 77 |
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"source_sites_per_sign": {
|
| 78 |
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"max": 639,
|
| 79 |
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"mean": 639.0,
|
| 80 |
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"min": 639
|
| 81 |
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},
|
| 82 |
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"status": "recorded",
|
| 83 |
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"unique_source_sites_per_sign": {
|
| 84 |
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"max": 639,
|
| 85 |
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"mean": 639.0,
|
| 86 |
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"min": 639
|
| 87 |
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},
|
| 88 |
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"unused_source_sites_per_sign": {
|
| 89 |
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"max": 0,
|
| 90 |
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"mean": 0.0,
|
| 91 |
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"min": 0
|
| 92 |
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},
|
| 93 |
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"used_sites_per_sign": {
|
| 94 |
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"max": 639,
|
| 95 |
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"mean": 639.0,
|
| 96 |
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"min": 639
|
| 97 |
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}
|
| 98 |
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},
|
| 99 |
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"intervention": "inh_dropout",
|
| 100 |
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"intervention_dose": 0.1,
|
| 101 |
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"kind": "intervention",
|
| 102 |
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"morphology_id": "specimen_314822529",
|
| 103 |
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"morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_314822529/model",
|
| 104 |
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"samples": 2,
|
| 105 |
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"shard_index": 4065,
|
| 106 |
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"teacher_balance_label": "axobench_ei_balanced"
|
| 107 |
+
}
|
minimal/interventions/inh_dropout_p10/specimen_314822529_intervention_pair_04066.json
ADDED
|
@@ -0,0 +1,107 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"backend": "neuron",
|
| 3 |
+
"coreneuron_gpu": false,
|
| 4 |
+
"duration_ms": 6000,
|
| 5 |
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"elapsed_seconds": 329.17962275600075,
|
| 6 |
+
"exc_gmax_scale": 0.859309649061239,
|
| 7 |
+
"generator": {
|
| 8 |
+
"allen_model_id": 497229124,
|
| 9 |
+
"allen_specimen_id": 314822529,
|
| 10 |
+
"axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um",
|
| 11 |
+
"backend": "neuron",
|
| 12 |
+
"biophysics_hoc_sha256": null,
|
| 13 |
+
"celsius": 34.0,
|
| 14 |
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"code_revision": {
|
| 15 |
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"commit": "112df5adf80562b47e92903f188426a5db59c0ab",
|
| 16 |
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"dirty": false
|
| 17 |
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},
|
| 18 |
+
"data_version": "v2",
|
| 19 |
+
"dt_ms": 0.025,
|
| 20 |
+
"exc_gmax_scale": 0.859309649061239,
|
| 21 |
+
"fit_parameters_sha256": "a8a5f14280f3a6bc1c614e972169f8068f6c8111701eb2cb42795bce9f09672e",
|
| 22 |
+
"inh_gmax_scale": 1.0,
|
| 23 |
+
"input_routing": "all_sites_by_type",
|
| 24 |
+
"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 25 |
+
"integrator": "fixed_step",
|
| 26 |
+
"junction_potential_mv": -14.0,
|
| 27 |
+
"mechanism_files": [
|
| 28 |
+
"CaDynamics.mod",
|
| 29 |
+
"Ca_HVA.mod",
|
| 30 |
+
"Ca_LVA.mod",
|
| 31 |
+
"DetAMPANMDA.mod",
|
| 32 |
+
"DetGABA.mod",
|
| 33 |
+
"Ih.mod",
|
| 34 |
+
"Im.mod",
|
| 35 |
+
"Im_v2.mod",
|
| 36 |
+
"K_P.mod",
|
| 37 |
+
"K_T.mod",
|
| 38 |
+
"Kd.mod",
|
| 39 |
+
"Kv2like.mod",
|
| 40 |
+
"Kv3_1.mod",
|
| 41 |
+
"NaTa.mod",
|
| 42 |
+
"NaTs.mod",
|
| 43 |
+
"NaV.mod",
|
| 44 |
+
"Nap.mod",
|
| 45 |
+
"SK.mod"
|
| 46 |
+
],
|
| 47 |
+
"mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042",
|
| 48 |
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"morphology_sha256": "4c5f25ba8928cf0a742b375828b1b1c171cf1cacc96755099e9df5210277cb13",
|
| 49 |
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"neuron_version": "9.0.2",
|
| 50 |
+
"nseg_policy": "allen_fit",
|
| 51 |
+
"soma_samples_per_ms": 4,
|
| 52 |
+
"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 53 |
+
"synapse_delay_ms": 0.0,
|
| 54 |
+
"synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)",
|
| 55 |
+
"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 56 |
+
"teacher": "allen_all_active",
|
| 57 |
+
"template_hoc_sha256": null,
|
| 58 |
+
"v_init_mv": -90.0
|
| 59 |
+
},
|
| 60 |
+
"inh_gmax_scale": 1.0,
|
| 61 |
+
"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 62 |
+
"input_routing": {
|
| 63 |
+
"all_traces_identical": true,
|
| 64 |
+
"defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.",
|
| 65 |
+
"duplicated_source_sites_per_sign": {
|
| 66 |
+
"max": 0,
|
| 67 |
+
"mean": 0.0,
|
| 68 |
+
"min": 0
|
| 69 |
+
},
|
| 70 |
+
"morphology_segments": {
|
| 71 |
+
"max": 220,
|
| 72 |
+
"mean": 220.0,
|
| 73 |
+
"min": 220
|
| 74 |
+
},
|
| 75 |
+
"n_traces": 2,
|
| 76 |
+
"policy": "source_site_preserving_normalized_arclength",
|
| 77 |
+
"source_sites_per_sign": {
|
| 78 |
+
"max": 639,
|
| 79 |
+
"mean": 639.0,
|
| 80 |
+
"min": 639
|
| 81 |
+
},
|
| 82 |
+
"status": "recorded",
|
| 83 |
+
"unique_source_sites_per_sign": {
|
| 84 |
+
"max": 639,
|
| 85 |
+
"mean": 639.0,
|
| 86 |
+
"min": 639
|
| 87 |
+
},
|
| 88 |
+
"unused_source_sites_per_sign": {
|
| 89 |
+
"max": 0,
|
| 90 |
+
"mean": 0.0,
|
| 91 |
+
"min": 0
|
| 92 |
+
},
|
| 93 |
+
"used_sites_per_sign": {
|
| 94 |
+
"max": 639,
|
| 95 |
+
"mean": 639.0,
|
| 96 |
+
"min": 639
|
| 97 |
+
}
|
| 98 |
+
},
|
| 99 |
+
"intervention": "inh_dropout",
|
| 100 |
+
"intervention_dose": 0.1,
|
| 101 |
+
"kind": "intervention",
|
| 102 |
+
"morphology_id": "specimen_314822529",
|
| 103 |
+
"morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_314822529/model",
|
| 104 |
+
"samples": 2,
|
| 105 |
+
"shard_index": 4066,
|
| 106 |
+
"teacher_balance_label": "axobench_ei_balanced"
|
| 107 |
+
}
|