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Axym-Labs
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axobench

Intervention pairs now live in Axym-Labs/axobench-interventions. This commit keeps the 125k ordinary trace corpus, removes duplicated intervention files and stale mixed-package metadata, and records the exact public split counts.

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README.md +20 -27
checksums.sha256 +0 -613
compression_report.json +0 -97
dataset_manifest_template.json +0 -189
dataset_package_manifest.json +18 -57
generation_completion_check.json +0 -43
generation_summary.json +0 -43
interventions/event_dropout/manifest.json +0 -0
interventions/event_dropout/specimen_479770916_intervention_pair_00731.json +0 -48
interventions/event_dropout/specimen_479770916_intervention_pair_00731.npz +0 -3
interventions/event_dropout/specimen_479770916_intervention_pair_00732.json +0 -48
interventions/event_dropout/specimen_479770916_intervention_pair_00732.npz +0 -3
interventions/event_dropout/specimen_479770916_intervention_pair_00733.json +0 -48
interventions/event_dropout/specimen_479770916_intervention_pair_00733.npz +0 -3
interventions/event_dropout/specimen_479770916_intervention_pair_00734.json +0 -48
interventions/event_dropout/specimen_479770916_intervention_pair_00734.npz +0 -3
interventions/event_dropout/specimen_479770916_intervention_pair_00735.json +0 -48
interventions/event_dropout/specimen_479770916_intervention_pair_00735.npz +0 -3
interventions/event_dropout/specimen_479770916_intervention_pair_00736.json +0 -48
interventions/event_dropout/specimen_479770916_intervention_pair_00736.npz +0 -3
interventions/event_dropout/specimen_479770916_intervention_pair_00737.json +0 -48
interventions/event_dropout/specimen_479770916_intervention_pair_00737.npz +0 -3
interventions/event_dropout/specimen_479770916_intervention_pair_00738.json +0 -48
interventions/event_dropout/specimen_479770916_intervention_pair_00738.npz +0 -3
interventions/event_dropout/specimen_487664663_intervention_pair_00474.json +0 -48
interventions/event_dropout/specimen_487664663_intervention_pair_00474.npz +0 -3
interventions/event_dropout/specimen_487664663_intervention_pair_00475.json +0 -48
interventions/event_dropout/specimen_487664663_intervention_pair_00475.npz +0 -3
interventions/event_dropout/specimen_487664663_intervention_pair_00476.json +0 -48
interventions/event_dropout/specimen_487664663_intervention_pair_00476.npz +0 -3
interventions/event_dropout/specimen_487664663_intervention_pair_00477.json +0 -48
interventions/event_dropout/specimen_487664663_intervention_pair_00477.npz +0 -3
interventions/event_dropout/specimen_487664663_intervention_pair_00478.json +0 -48
interventions/event_dropout/specimen_487664663_intervention_pair_00478.npz +0 -3
interventions/event_dropout/specimen_487664663_intervention_pair_00479.json +0 -48
interventions/event_dropout/specimen_487664663_intervention_pair_00479.npz +0 -3
interventions/event_dropout/specimen_487664663_intervention_pair_00480.json +0 -48
interventions/event_dropout/specimen_487664663_intervention_pair_00480.npz +0 -3
interventions/event_dropout/specimen_487664663_intervention_pair_00481.json +0 -48
interventions/event_dropout/specimen_487664663_intervention_pair_00481.npz +0 -3
interventions/event_dropout/specimen_488679042_intervention_pair_01245.json +0 -48
interventions/event_dropout/specimen_488679042_intervention_pair_01245.npz +0 -3
interventions/event_dropout/specimen_488679042_intervention_pair_01246.json +0 -48
interventions/event_dropout/specimen_488679042_intervention_pair_01246.npz +0 -3
interventions/event_dropout/specimen_488679042_intervention_pair_01247.json +0 -48
interventions/event_dropout/specimen_488679042_intervention_pair_01247.npz +0 -3
interventions/event_dropout/specimen_488679042_intervention_pair_01248.json +0 -48
interventions/event_dropout/specimen_488679042_intervention_pair_01248.npz +0 -3
interventions/event_dropout/specimen_488679042_intervention_pair_01249.json +0 -48
interventions/event_dropout/specimen_488679042_intervention_pair_01249.npz +0 -3

README.md CHANGED Viewed

@@ -16,25 +16,27 @@ tags:
 # AxoBench
-AxoBench is a large-scale dataset containing L5-pyramidal neuron simulations.
-It was generated with neuronio-backwards-compatibility, covering multiple morphologies,
-out-of-distribution interventions and eliminating a clipping problem.
-Generated with CoreNEURON.
 ## Layout
 - `train/`: 785 compressed NPZ shards, 100,000 traces.
 - `val/`: 100 compressed NPZ shards, 12,500 traces.
 - `test/`: 100 compressed NPZ shards, 12,500 traces.
-- `private-test/`: 100 compressed NPZ shards, 12,500 traces.
-- `interventions/<name>/`: paired baseline/intervention NPZ shards for
-  `event_dropout`, `exc_dropout`, `inh_dropout`, `site_silence`, and
-  `temporal_jitter`; each intervention contains 2,500 paired traces.
-The ordinary trace shards use `.npz` files with arrays such as `inputs`,
-`targets`, and `sample_ids`. Intervention shards use paired arrays such as
-`baseline_inputs`, `intervention_inputs`, `baseline_targets`, and
-`intervention_targets`.
 ## Compression
@@ -44,24 +46,15 @@ uploads. Do not wrap this folder in one monolithic zip or tar archive for the
 primary Hugging Face distribution: the shards are already compressed and an
 outer archive would make subset access worse.
-See `compression_report.json` for measured compression ratios and
-`checksums.sha256` for file integrity checks.
 ## Metadata
-- `dataset_manifest_template.json`: intended dataset structure and benchmark
-  framing.
-- `generation_summary.json`: generation backend, morphology set, sample counts,
-  and runtime summary.
-- `generation_completion_check.json`: split/intervention completion summary.
-- `dataset_package_manifest.json`: upload/package-level summary.
-- `compression_report.json`: compression audit.
-- `checksums.sha256`: SHA-256 checksums for all packaged files except the
-  checksum file itself.
 ## Access State
-This upload is public so collaborators and reviewers can access the packaged
-shards directly. The dataset card, license, private-test policy, and
-paper-facing framing should still be reviewed before a paper-facing release
-tag or DOI mirror.

 # AxoBench
+AxoBench is a large-scale CoreNEURON corpus for training and evaluating
+data-driven models of layer-5 pyramidal neurons.
+It contains 125,000 six-second traces across multiple reconstructed
+morphologies, with event inputs and paired somatic-voltage/spike targets.
+Two companion datasets cover distinct evaluation settings:
+- [`Axym-Labs/axobench-population`](https://huggingface.co/datasets/Axym-Labs/axobench-population)
+  contains population-compatible shards and connectivity context.
+- [`Axym-Labs/axobench-interventions`](https://huggingface.co/datasets/Axym-Labs/axobench-interventions)
+  contains paired causal interventions.
 ## Layout
 - `train/`: 785 compressed NPZ shards, 100,000 traces.
 - `val/`: 100 compressed NPZ shards, 12,500 traces.
 - `test/`: 100 compressed NPZ shards, 12,500 traces.
+Each compressed NPZ shard contains arrays including `inputs`, `targets`, and
+`sample_ids`; the adjacent JSON file records shard-level provenance and
+metadata.
 ## Compression
 primary Hugging Face distribution: the shards are already compressed and an
 outer archive would make subset access worse.
+See `checksums.sha256` for file integrity checks.
 ## Metadata
+- `dataset_package_manifest.json`: split counts, sizes, and packaging details.
+- `checksums.sha256`: SHA-256 checksums for all trace and shard-metadata files.
 ## Access State
+The public `test` split supports reproducible comparison.
+An unreleased confirmation set is held separately and is not part of this Hub
+repository.

checksums.sha256 CHANGED Viewed

@@ -1,615 +1,3 @@
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 }

generation_completion_check.json DELETED Viewed

@@ -1,43 +0,0 @@
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generation_summary.json DELETED Viewed

@@ -1,43 +0,0 @@
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