AxoBench v2 minimal: interventions inh_dropout_p35 (part 3)
Browse filesThis view is limited to 50 files because it contains too many changes. See raw diff
- minimal/interventions/inh_dropout_p35/specimen_484559000_intervention_pair_08866.npz +3 -0
- minimal/interventions/inh_dropout_p35/specimen_484559000_intervention_pair_08867.json +107 -0
- minimal/interventions/inh_dropout_p35/specimen_484559000_intervention_pair_08867.npz +3 -0
- minimal/interventions/inh_dropout_p35/specimen_484559000_intervention_pair_08868.json +107 -0
- minimal/interventions/inh_dropout_p35/specimen_484559000_intervention_pair_08868.npz +3 -0
- minimal/interventions/inh_dropout_p35/specimen_484559000_intervention_pair_08869.json +107 -0
- minimal/interventions/inh_dropout_p35/specimen_484559000_intervention_pair_08869.npz +3 -0
- minimal/interventions/inh_dropout_p35/specimen_484559000_intervention_pair_08870.json +107 -0
- minimal/interventions/inh_dropout_p35/specimen_484559000_intervention_pair_08870.npz +3 -0
- minimal/interventions/inh_dropout_p35/specimen_484559000_intervention_pair_08871.json +107 -0
- minimal/interventions/inh_dropout_p35/specimen_484559000_intervention_pair_08871.npz +3 -0
- minimal/interventions/inh_dropout_p35/specimen_484559000_intervention_pair_08872.json +107 -0
- minimal/interventions/inh_dropout_p35/specimen_484559000_intervention_pair_08872.npz +3 -0
- minimal/interventions/inh_dropout_p35/specimen_484559000_intervention_pair_08873.json +107 -0
- minimal/interventions/inh_dropout_p35/specimen_484559000_intervention_pair_08873.npz +3 -0
- minimal/interventions/inh_dropout_p35/specimen_484559000_intervention_pair_08874.json +107 -0
- minimal/interventions/inh_dropout_p35/specimen_484559000_intervention_pair_08874.npz +3 -0
- minimal/interventions/inh_dropout_p35/specimen_484559000_intervention_pair_08875.json +107 -0
- minimal/interventions/inh_dropout_p35/specimen_484559000_intervention_pair_08875.npz +3 -0
- minimal/interventions/inh_dropout_p35/specimen_484559000_intervention_pair_08876.json +107 -0
- minimal/interventions/inh_dropout_p35/specimen_484559000_intervention_pair_08876.npz +3 -0
- minimal/interventions/inh_dropout_p35/specimen_485574832_intervention_pair_02714.json +107 -0
- minimal/interventions/inh_dropout_p35/specimen_485574832_intervention_pair_02714.npz +3 -0
- minimal/interventions/inh_dropout_p35/specimen_485574832_intervention_pair_02715.json +107 -0
- minimal/interventions/inh_dropout_p35/specimen_485574832_intervention_pair_02715.npz +3 -0
- minimal/interventions/inh_dropout_p35/specimen_485574832_intervention_pair_02716.json +107 -0
- minimal/interventions/inh_dropout_p35/specimen_485574832_intervention_pair_02716.npz +3 -0
- minimal/interventions/inh_dropout_p35/specimen_485574832_intervention_pair_02717.json +107 -0
- minimal/interventions/inh_dropout_p35/specimen_485574832_intervention_pair_02717.npz +3 -0
- minimal/interventions/inh_dropout_p35/specimen_485574832_intervention_pair_02718.json +107 -0
- minimal/interventions/inh_dropout_p35/specimen_485574832_intervention_pair_02718.npz +3 -0
- minimal/interventions/inh_dropout_p35/specimen_485574832_intervention_pair_02719.json +107 -0
- minimal/interventions/inh_dropout_p35/specimen_485574832_intervention_pair_02719.npz +3 -0
- minimal/interventions/inh_dropout_p35/specimen_485574832_intervention_pair_02720.json +107 -0
- minimal/interventions/inh_dropout_p35/specimen_485574832_intervention_pair_02720.npz +3 -0
- minimal/interventions/inh_dropout_p35/specimen_485574832_intervention_pair_02721.json +107 -0
- minimal/interventions/inh_dropout_p35/specimen_485574832_intervention_pair_02721.npz +3 -0
- minimal/interventions/inh_dropout_p35/specimen_485574832_intervention_pair_02722.json +107 -0
- minimal/interventions/inh_dropout_p35/specimen_485574832_intervention_pair_02722.npz +3 -0
- minimal/interventions/inh_dropout_p35/specimen_485574832_intervention_pair_02723.json +107 -0
- minimal/interventions/inh_dropout_p35/specimen_485574832_intervention_pair_02723.npz +3 -0
- minimal/interventions/inh_dropout_p35/specimen_485574832_intervention_pair_02724.json +107 -0
- minimal/interventions/inh_dropout_p35/specimen_485574832_intervention_pair_02724.npz +3 -0
- minimal/interventions/inh_dropout_p35/specimen_485574832_intervention_pair_02725.json +107 -0
- minimal/interventions/inh_dropout_p35/specimen_485574832_intervention_pair_02725.npz +3 -0
- minimal/interventions/inh_dropout_p35/specimen_485574832_intervention_pair_02726.json +107 -0
- minimal/interventions/inh_dropout_p35/specimen_485574832_intervention_pair_02726.npz +3 -0
- minimal/interventions/inh_dropout_p35/specimen_485574832_intervention_pair_02727.json +107 -0
- minimal/interventions/inh_dropout_p35/specimen_485574832_intervention_pair_02727.npz +3 -0
- minimal/interventions/inh_dropout_p35/specimen_485574832_intervention_pair_02728.json +107 -0
minimal/interventions/inh_dropout_p35/specimen_484559000_intervention_pair_08866.npz
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version https://git-lfs.github.com/spec/v1
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oid sha256:c29a99f57a551c86da842639c01ae97338dd619302df182d93e227dbdea0de23
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size 1231709
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minimal/interventions/inh_dropout_p35/specimen_484559000_intervention_pair_08867.json
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{
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"backend": "neuron",
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"coreneuron_gpu": false,
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| 4 |
+
"duration_ms": 6000,
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| 5 |
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"elapsed_seconds": 206.02054192500145,
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"exc_gmax_scale": 0.7384130729697498,
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| 7 |
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"generator": {
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| 8 |
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"allen_model_id": 497232339,
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| 9 |
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"allen_specimen_id": 484559000,
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"axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um",
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"backend": "neuron",
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"celsius": 34.0,
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"code_revision": {
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"commit": "112df5adf80562b47e92903f188426a5db59c0ab",
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| 16 |
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"dirty": false
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},
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| 18 |
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"data_version": "v2",
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| 19 |
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"dt_ms": 0.025,
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| 20 |
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"exc_gmax_scale": 0.7384130729697498,
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| 21 |
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"fit_parameters_sha256": "1550f086034d14e0ebb40ee2f0c82199a76e1efb8d5fd18c60e1e09fa220e3b3",
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| 22 |
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"inh_gmax_scale": 1.0,
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| 23 |
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"input_routing": "all_sites_by_type",
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"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
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"integrator": "fixed_step",
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"junction_potential_mv": -14.0,
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"mechanism_files": [
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"CaDynamics.mod",
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"Ca_HVA.mod",
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"Ca_LVA.mod",
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"DetAMPANMDA.mod",
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"DetGABA.mod",
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"Ih.mod",
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"Im.mod",
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"Im_v2.mod",
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"K_P.mod",
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"K_T.mod",
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"Kd.mod",
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"Kv2like.mod",
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"Kv3_1.mod",
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"NaTa.mod",
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"NaTs.mod",
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"NaV.mod",
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"Nap.mod",
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"SK.mod"
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],
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"mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042",
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"neuron_version": "9.0.2",
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"nseg_policy": "allen_fit",
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"soma_samples_per_ms": 4,
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| 52 |
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"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
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| 53 |
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"synapse_delay_ms": 0.0,
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| 54 |
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"synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)",
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"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
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"teacher": "allen_all_active",
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| 57 |
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"template_hoc_sha256": null,
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| 58 |
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"v_init_mv": -90.0
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},
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"inh_gmax_scale": 1.0,
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| 61 |
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"input_event_policy": "source_neuronio_sampler_unmodified",
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| 62 |
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"input_routing": {
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| 63 |
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"all_traces_identical": true,
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| 64 |
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"defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.",
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| 65 |
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"duplicated_source_sites_per_sign": {
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| 66 |
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"max": 0,
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| 67 |
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"max": 132,
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| 73 |
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"min": 132
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| 74 |
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},
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"n_traces": 2,
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| 76 |
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"policy": "source_site_preserving_normalized_arclength",
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| 77 |
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"source_sites_per_sign": {
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| 78 |
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"max": 639,
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| 79 |
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"mean": 639.0,
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| 80 |
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"min": 639
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| 81 |
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},
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| 82 |
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"status": "recorded",
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| 83 |
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"unique_source_sites_per_sign": {
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| 84 |
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"max": 639,
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| 85 |
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"mean": 639.0,
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| 86 |
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"min": 639
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| 87 |
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},
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"unused_source_sites_per_sign": {
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| 89 |
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"max": 0,
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"mean": 0.0,
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"min": 0
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| 92 |
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},
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"used_sites_per_sign": {
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| 94 |
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"max": 639,
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| 95 |
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"mean": 639.0,
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| 96 |
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"min": 639
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| 97 |
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}
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| 98 |
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},
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| 99 |
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"intervention": "inh_dropout",
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| 100 |
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"intervention_dose": 0.35,
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| 101 |
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"kind": "intervention",
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| 102 |
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"morphology_id": "specimen_484559000",
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| 103 |
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"morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_484559000/model",
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| 104 |
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"samples": 2,
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| 105 |
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"shard_index": 8867,
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| 106 |
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"teacher_balance_label": "axobench_ei_balanced"
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| 107 |
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}
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minimal/interventions/inh_dropout_p35/specimen_484559000_intervention_pair_08867.npz
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version https://git-lfs.github.com/spec/v1
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oid sha256:5a268d67d80f77296dd5e24ca722b65b70747a603af30b2911770fdc681d026d
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size 1216426
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minimal/interventions/inh_dropout_p35/specimen_484559000_intervention_pair_08868.json
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{
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"backend": "neuron",
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| 4 |
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"duration_ms": 6000,
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| 5 |
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"generator": {
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| 8 |
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"allen_model_id": 497232339,
|
| 9 |
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"allen_specimen_id": 484559000,
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| 10 |
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"axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um",
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| 11 |
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"backend": "neuron",
|
| 12 |
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"biophysics_hoc_sha256": null,
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| 13 |
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"celsius": 34.0,
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"dirty": false
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},
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"dt_ms": 0.025,
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"exc_gmax_scale": 0.7384130729697498,
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"fit_parameters_sha256": "1550f086034d14e0ebb40ee2f0c82199a76e1efb8d5fd18c60e1e09fa220e3b3",
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"inh_gmax_scale": 1.0,
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| 23 |
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"input_routing": "all_sites_by_type",
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| 24 |
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"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
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| 25 |
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"integrator": "fixed_step",
|
| 26 |
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"junction_potential_mv": -14.0,
|
| 27 |
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"mechanism_files": [
|
| 28 |
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"CaDynamics.mod",
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| 29 |
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"Ca_HVA.mod",
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| 30 |
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"Ca_LVA.mod",
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| 31 |
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"DetAMPANMDA.mod",
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| 32 |
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"DetGABA.mod",
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| 33 |
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"Ih.mod",
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| 34 |
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"Im.mod",
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| 35 |
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"Im_v2.mod",
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| 36 |
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"K_P.mod",
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| 37 |
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"K_T.mod",
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| 38 |
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"Kd.mod",
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| 39 |
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"Kv2like.mod",
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| 40 |
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"Kv3_1.mod",
|
| 41 |
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"NaTa.mod",
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| 42 |
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"NaTs.mod",
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| 43 |
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"NaV.mod",
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| 44 |
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"Nap.mod",
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| 45 |
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"SK.mod"
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],
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"mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042",
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"morphology_sha256": "c8f57971772ac1923c1f9ce5b560ed75ee347884f7ef0336044ebb3beaeac588",
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"neuron_version": "9.0.2",
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"nseg_policy": "allen_fit",
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| 51 |
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"soma_samples_per_ms": 4,
|
| 52 |
+
"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 53 |
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"synapse_delay_ms": 0.0,
|
| 54 |
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"synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)",
|
| 55 |
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"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 56 |
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| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 62 |
+
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|
| 63 |
+
"all_traces_identical": true,
|
| 64 |
+
"defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.",
|
| 65 |
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| 66 |
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|
| 67 |
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|
| 68 |
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|
| 69 |
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|
| 70 |
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|
| 71 |
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|
| 72 |
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|
| 73 |
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|
| 74 |
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|
| 75 |
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|
| 76 |
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"policy": "source_site_preserving_normalized_arclength",
|
| 77 |
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|
| 78 |
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|
| 79 |
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|
| 80 |
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|
| 81 |
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|
| 82 |
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"status": "recorded",
|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
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|
| 87 |
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|
| 88 |
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|
| 89 |
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|
| 90 |
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|
| 91 |
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|
| 92 |
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|
| 93 |
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|
| 94 |
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|
| 95 |
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|
| 96 |
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"min": 639
|
| 97 |
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}
|
| 98 |
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},
|
| 99 |
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"intervention": "inh_dropout",
|
| 100 |
+
"intervention_dose": 0.35,
|
| 101 |
+
"kind": "intervention",
|
| 102 |
+
"morphology_id": "specimen_484559000",
|
| 103 |
+
"morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_484559000/model",
|
| 104 |
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"samples": 2,
|
| 105 |
+
"shard_index": 8868,
|
| 106 |
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"teacher_balance_label": "axobench_ei_balanced"
|
| 107 |
+
}
|
minimal/interventions/inh_dropout_p35/specimen_484559000_intervention_pair_08868.npz
ADDED
|
@@ -0,0 +1,3 @@
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|
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|
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|
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|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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| 2 |
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oid sha256:b6122bdb017d12ddd3d3261df2ae5951e85cb7f453703af8229d416a639ce85a
|
| 3 |
+
size 1218206
|
minimal/interventions/inh_dropout_p35/specimen_484559000_intervention_pair_08869.json
ADDED
|
@@ -0,0 +1,107 @@
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
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|
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|
|
|
|
|
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|
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|
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|
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|
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|
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|
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|
|
|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
|
|
|
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|
|
| 1 |
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{
|
| 2 |
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|
| 9 |
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|
| 10 |
+
"axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um",
|
| 11 |
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|
| 12 |
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|
| 13 |
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|
| 16 |
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|
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|
| 19 |
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|
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|
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|
| 23 |
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|
| 24 |
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|
| 25 |
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"integrator": "fixed_step",
|
| 26 |
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"junction_potential_mv": -14.0,
|
| 27 |
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"mechanism_files": [
|
| 28 |
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"CaDynamics.mod",
|
| 29 |
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"Ca_HVA.mod",
|
| 30 |
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"Ca_LVA.mod",
|
| 31 |
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"DetAMPANMDA.mod",
|
| 32 |
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"DetGABA.mod",
|
| 33 |
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"Ih.mod",
|
| 34 |
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"Im.mod",
|
| 35 |
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"Im_v2.mod",
|
| 36 |
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"K_P.mod",
|
| 37 |
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"K_T.mod",
|
| 38 |
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|
| 39 |
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|
| 40 |
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|
| 41 |
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|
| 42 |
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"NaTs.mod",
|
| 43 |
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"NaV.mod",
|
| 44 |
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| 45 |
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|
| 46 |
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|
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|
| 50 |
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|
| 51 |
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|
| 52 |
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"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 53 |
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"synapse_delay_ms": 0.0,
|
| 54 |
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"synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)",
|
| 55 |
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"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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},
|
| 60 |
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|
| 61 |
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"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 62 |
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"input_routing": {
|
| 63 |
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"all_traces_identical": true,
|
| 64 |
+
"defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.",
|
| 65 |
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"duplicated_source_sites_per_sign": {
|
| 66 |
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"max": 0,
|
| 67 |
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|
| 68 |
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|
| 69 |
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|
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|
| 71 |
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|
| 72 |
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|
| 73 |
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|
| 74 |
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},
|
| 75 |
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|
| 76 |
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"policy": "source_site_preserving_normalized_arclength",
|
| 77 |
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|
| 78 |
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|
| 79 |
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|
| 80 |
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|
| 81 |
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},
|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
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|
| 87 |
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},
|
| 88 |
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|
| 89 |
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|
| 90 |
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|
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|
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|
| 93 |
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|
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|
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|
| 96 |
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|
| 97 |
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}
|
| 98 |
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},
|
| 99 |
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"intervention": "inh_dropout",
|
| 100 |
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"intervention_dose": 0.35,
|
| 101 |
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"kind": "intervention",
|
| 102 |
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"morphology_id": "specimen_484559000",
|
| 103 |
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"morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_484559000/model",
|
| 104 |
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"samples": 2,
|
| 105 |
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"shard_index": 8869,
|
| 106 |
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"teacher_balance_label": "axobench_ei_balanced"
|
| 107 |
+
}
|
minimal/interventions/inh_dropout_p35/specimen_484559000_intervention_pair_08869.npz
ADDED
|
@@ -0,0 +1,3 @@
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|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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| 2 |
+
oid sha256:473b6bfc9e309ce9022c7bb971e2361e5f3e4804fb3f2349cd200f0c2a221881
|
| 3 |
+
size 1223019
|
minimal/interventions/inh_dropout_p35/specimen_484559000_intervention_pair_08870.json
ADDED
|
@@ -0,0 +1,107 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
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|
|
|
|
|
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|
|
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|
|
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|
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|
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|
| 1 |
+
{
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|
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|
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|
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|
| 9 |
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|
| 10 |
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"axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um",
|
| 11 |
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|
| 12 |
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|
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|
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|
| 23 |
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|
| 24 |
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|
| 25 |
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"integrator": "fixed_step",
|
| 26 |
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|
| 27 |
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"mechanism_files": [
|
| 28 |
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"CaDynamics.mod",
|
| 29 |
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"Ca_HVA.mod",
|
| 30 |
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"Ca_LVA.mod",
|
| 31 |
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"DetAMPANMDA.mod",
|
| 32 |
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"DetGABA.mod",
|
| 33 |
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"Ih.mod",
|
| 34 |
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"Im.mod",
|
| 35 |
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"Im_v2.mod",
|
| 36 |
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"K_P.mod",
|
| 37 |
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"K_T.mod",
|
| 38 |
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"Kd.mod",
|
| 39 |
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"Kv2like.mod",
|
| 40 |
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"Kv3_1.mod",
|
| 41 |
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"NaTa.mod",
|
| 42 |
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"NaTs.mod",
|
| 43 |
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"NaV.mod",
|
| 44 |
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"Nap.mod",
|
| 45 |
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"SK.mod"
|
| 46 |
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],
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| 47 |
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"mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042",
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|
| 50 |
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"nseg_policy": "allen_fit",
|
| 51 |
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"soma_samples_per_ms": 4,
|
| 52 |
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"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 53 |
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"synapse_delay_ms": 0.0,
|
| 54 |
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"synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)",
|
| 55 |
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"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
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| 56 |
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"teacher": "allen_all_active",
|
| 57 |
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|
| 58 |
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"v_init_mv": -90.0
|
| 59 |
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},
|
| 60 |
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"inh_gmax_scale": 1.0,
|
| 61 |
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"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 62 |
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"input_routing": {
|
| 63 |
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"all_traces_identical": true,
|
| 64 |
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"defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.",
|
| 65 |
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"duplicated_source_sites_per_sign": {
|
| 66 |
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"max": 0,
|
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|
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|
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"morphology_segments": {
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| 71 |
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|
| 72 |
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|
| 73 |
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|
| 74 |
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|
| 75 |
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|
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|
| 77 |
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|
| 78 |
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|
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|
| 80 |
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|
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|
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|
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|
| 84 |
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|
| 85 |
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|
| 86 |
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|
| 87 |
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|
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|
| 89 |
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|
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|
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|
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|
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|
| 95 |
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|
| 96 |
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|
| 97 |
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|
| 98 |
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|
| 99 |
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"intervention": "inh_dropout",
|
| 100 |
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|
| 101 |
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"kind": "intervention",
|
| 102 |
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"morphology_id": "specimen_484559000",
|
| 103 |
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"morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_484559000/model",
|
| 104 |
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"samples": 2,
|
| 105 |
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|
| 106 |
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|
| 107 |
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}
|
minimal/interventions/inh_dropout_p35/specimen_484559000_intervention_pair_08870.npz
ADDED
|
@@ -0,0 +1,3 @@
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|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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oid sha256:ca117287425a154f725a3a86cef35f0f45432d4a4cef1f2db8c1e057351879fc
|
| 3 |
+
size 1226612
|
minimal/interventions/inh_dropout_p35/specimen_484559000_intervention_pair_08871.json
ADDED
|
@@ -0,0 +1,107 @@
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|
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|
|
|
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|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
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|
|
|
|
|
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|
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|
|
|
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|
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|
|
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|
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|
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|
| 10 |
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|
| 11 |
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|
| 12 |
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|
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|
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|
| 24 |
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|
| 25 |
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|
| 26 |
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|
| 27 |
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|
| 28 |
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"CaDynamics.mod",
|
| 29 |
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"Ca_HVA.mod",
|
| 30 |
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"Ca_LVA.mod",
|
| 31 |
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"DetAMPANMDA.mod",
|
| 32 |
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"DetGABA.mod",
|
| 33 |
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"Ih.mod",
|
| 34 |
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"Im.mod",
|
| 35 |
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|
| 36 |
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"K_P.mod",
|
| 37 |
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|
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|
| 51 |
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|
| 52 |
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|
| 53 |
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|
| 54 |
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"synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)",
|
| 55 |
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"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
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| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 62 |
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"input_routing": {
|
| 63 |
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"all_traces_identical": true,
|
| 64 |
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"defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.",
|
| 65 |
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"duplicated_source_sites_per_sign": {
|
| 66 |
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|
| 67 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 84 |
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|
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|
| 86 |
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|
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|
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|
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|
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|
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|
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|
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|
| 99 |
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|
| 100 |
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|
| 101 |
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|
| 102 |
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|
| 103 |
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|
| 104 |
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|
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|
| 106 |
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|
| 107 |
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}
|
minimal/interventions/inh_dropout_p35/specimen_484559000_intervention_pair_08871.npz
ADDED
|
@@ -0,0 +1,3 @@
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|
|
|
|
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|
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|
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|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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oid sha256:6188b2a7aeae08d14488d32ede3a5e6d1e919f01c95aab5ea3604db800e76e1d
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| 3 |
+
size 1228286
|
minimal/interventions/inh_dropout_p35/specimen_484559000_intervention_pair_08872.json
ADDED
|
@@ -0,0 +1,107 @@
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|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
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|
|
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|
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|
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|
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|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
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|
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|
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|
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|
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|
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|
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|
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|
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{
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|
| 9 |
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|
| 10 |
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|
| 11 |
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|
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|
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|
| 26 |
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|
| 27 |
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|
| 28 |
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|
| 29 |
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|
| 30 |
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|
| 31 |
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|
| 32 |
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|
| 33 |
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|
| 34 |
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|
| 35 |
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|
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|
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|
| 38 |
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|
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|
| 40 |
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|
| 41 |
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|
| 42 |
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|
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|
| 44 |
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|
| 51 |
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|
| 52 |
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"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 53 |
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"synapse_delay_ms": 0.0,
|
| 54 |
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"synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)",
|
| 55 |
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"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
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| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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},
|
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|
| 61 |
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|
| 62 |
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|
| 63 |
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"all_traces_identical": true,
|
| 64 |
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"defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.",
|
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|
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|
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|
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|
| 101 |
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"kind": "intervention",
|
| 102 |
+
"morphology_id": "specimen_484559000",
|
| 103 |
+
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|
| 104 |
+
"samples": 2,
|
| 105 |
+
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|
| 106 |
+
"teacher_balance_label": "axobench_ei_balanced"
|
| 107 |
+
}
|
minimal/interventions/inh_dropout_p35/specimen_484559000_intervention_pair_08872.npz
ADDED
|
@@ -0,0 +1,3 @@
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| 1 |
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version https://git-lfs.github.com/spec/v1
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size 1198223
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minimal/interventions/inh_dropout_p35/specimen_484559000_intervention_pair_08873.json
ADDED
|
@@ -0,0 +1,107 @@
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|
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|
|
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|
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|
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|
|
|
|
|
|
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|
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|
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|
|
|
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|
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|
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|
|
|
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|
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|
|
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|
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|
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|
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|
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|
|
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|
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|
|
|
|
|
|
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|
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|
|
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|
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|
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|
|
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|
| 10 |
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|
| 11 |
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|
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|
| 24 |
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|
| 25 |
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|
| 26 |
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|
| 27 |
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|
| 28 |
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"CaDynamics.mod",
|
| 29 |
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|
| 30 |
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"Ca_LVA.mod",
|
| 31 |
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|
| 32 |
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"DetGABA.mod",
|
| 33 |
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|
| 34 |
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|
| 35 |
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|
| 36 |
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|
| 37 |
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|
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|
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|
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|
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|
| 51 |
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|
| 53 |
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|
| 54 |
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|
| 55 |
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"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
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| 57 |
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|
| 58 |
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|
| 59 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
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"all_traces_identical": true,
|
| 64 |
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"defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.",
|
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|
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|
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|
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|
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|
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|
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|
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|
| 101 |
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|
| 102 |
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|
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|
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|
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|
| 107 |
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|
minimal/interventions/inh_dropout_p35/specimen_484559000_intervention_pair_08873.npz
ADDED
|
@@ -0,0 +1,3 @@
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| 1 |
+
version https://git-lfs.github.com/spec/v1
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oid sha256:629422c31968d87001e1ae11183e510f4ddb773d71ec3bc5bd3789de06ac54ec
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| 3 |
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size 1193454
|
minimal/interventions/inh_dropout_p35/specimen_484559000_intervention_pair_08874.json
ADDED
|
@@ -0,0 +1,107 @@
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|
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|
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|
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|
|
|
|
|
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|
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|
|
|
|
|
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|
|
|
|
|
|
|
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|
|
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|
|
|
|
|
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|
|
|
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|
|
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|
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|
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|
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|
|
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|
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|
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|
|
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|
|
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{
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|
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|
| 10 |
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|
| 11 |
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|
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|
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|
| 24 |
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|
| 25 |
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|
| 26 |
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|
| 27 |
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|
| 28 |
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|
| 29 |
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|
| 30 |
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|
| 31 |
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|
| 32 |
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| 33 |
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|
| 34 |
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| 35 |
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| 36 |
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|
| 37 |
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|
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|
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|
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|
| 51 |
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|
| 52 |
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"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 53 |
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"synapse_delay_ms": 0.0,
|
| 54 |
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"synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)",
|
| 55 |
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"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
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| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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},
|
| 60 |
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|
| 61 |
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"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 62 |
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"input_routing": {
|
| 63 |
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"all_traces_identical": true,
|
| 64 |
+
"defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.",
|
| 65 |
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"duplicated_source_sites_per_sign": {
|
| 66 |
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|
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|
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|
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|
| 71 |
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|
| 72 |
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|
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|
| 74 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 99 |
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"intervention": "inh_dropout",
|
| 100 |
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|
| 101 |
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"kind": "intervention",
|
| 102 |
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"morphology_id": "specimen_484559000",
|
| 103 |
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|
| 104 |
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"samples": 2,
|
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|
| 106 |
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"teacher_balance_label": "axobench_ei_balanced"
|
| 107 |
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}
|
minimal/interventions/inh_dropout_p35/specimen_484559000_intervention_pair_08874.npz
ADDED
|
@@ -0,0 +1,3 @@
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|
|
|
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|
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|
|
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|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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oid sha256:acb6107abc488513ce7d98d2d63c45ecd2144d3b93ea4b4b713c5e5d1d687f5a
|
| 3 |
+
size 1238076
|
minimal/interventions/inh_dropout_p35/specimen_484559000_intervention_pair_08875.json
ADDED
|
@@ -0,0 +1,107 @@
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|
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|
|
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|
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|
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|
|
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|
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|
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|
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|
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|
|
|
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|
|
|
|
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|
|
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|
|
|
|
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|
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|
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|
|
|
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|
|
|
|
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|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
| 1 |
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{
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|
| 10 |
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|
| 11 |
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|
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|
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|
| 23 |
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|
| 24 |
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|
| 25 |
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|
| 26 |
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|
| 27 |
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|
| 28 |
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"CaDynamics.mod",
|
| 29 |
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"Ca_HVA.mod",
|
| 30 |
+
"Ca_LVA.mod",
|
| 31 |
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"DetAMPANMDA.mod",
|
| 32 |
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"DetGABA.mod",
|
| 33 |
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"Ih.mod",
|
| 34 |
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"Im.mod",
|
| 35 |
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"Im_v2.mod",
|
| 36 |
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"K_P.mod",
|
| 37 |
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"K_T.mod",
|
| 38 |
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"Kd.mod",
|
| 39 |
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"Kv2like.mod",
|
| 40 |
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|
| 41 |
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|
| 42 |
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"NaTs.mod",
|
| 43 |
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"NaV.mod",
|
| 44 |
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|
| 46 |
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|
| 51 |
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| 52 |
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"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 53 |
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"synapse_delay_ms": 0.0,
|
| 54 |
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"synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)",
|
| 55 |
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"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
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| 57 |
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| 59 |
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|
| 61 |
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"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 62 |
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"input_routing": {
|
| 63 |
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"all_traces_identical": true,
|
| 64 |
+
"defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.",
|
| 65 |
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"duplicated_source_sites_per_sign": {
|
| 66 |
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|
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|
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|
| 72 |
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|
| 73 |
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|
| 74 |
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| 75 |
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|
| 76 |
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"policy": "source_site_preserving_normalized_arclength",
|
| 77 |
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|
| 78 |
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|
| 79 |
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|
| 80 |
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|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
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"min": 639
|
| 87 |
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|
| 88 |
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|
| 89 |
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|
| 90 |
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|
| 91 |
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|
| 92 |
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|
| 93 |
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|
| 94 |
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|
| 95 |
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|
| 96 |
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|
| 97 |
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|
| 98 |
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},
|
| 99 |
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"intervention": "inh_dropout",
|
| 100 |
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"intervention_dose": 0.35,
|
| 101 |
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"kind": "intervention",
|
| 102 |
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"morphology_id": "specimen_484559000",
|
| 103 |
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"morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_484559000/model",
|
| 104 |
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"samples": 2,
|
| 105 |
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|
| 106 |
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|
| 107 |
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}
|
minimal/interventions/inh_dropout_p35/specimen_484559000_intervention_pair_08875.npz
ADDED
|
@@ -0,0 +1,3 @@
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| 1 |
+
version https://git-lfs.github.com/spec/v1
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| 2 |
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oid sha256:5c41fb990a1a97aa5472698d686ec1db49e5a986ba4f5a704a7bca5401c98c1a
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| 3 |
+
size 1199111
|
minimal/interventions/inh_dropout_p35/specimen_484559000_intervention_pair_08876.json
ADDED
|
@@ -0,0 +1,107 @@
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|
|
|
|
|
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|
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|
|
|
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|
|
|
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|
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|
|
|
|
|
|
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|
|
|
|
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|
|
|
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|
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|
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|
|
|
|
|
|
|
|
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|
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|
| 1 |
+
{
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| 2 |
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|
| 3 |
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|
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|
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|
| 9 |
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|
| 10 |
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|
| 11 |
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|
| 12 |
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|
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|
| 23 |
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|
| 24 |
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|
| 25 |
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|
| 26 |
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|
| 27 |
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|
| 28 |
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|
| 29 |
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"Ca_HVA.mod",
|
| 30 |
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"Ca_LVA.mod",
|
| 31 |
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"DetAMPANMDA.mod",
|
| 32 |
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"DetGABA.mod",
|
| 33 |
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"Ih.mod",
|
| 34 |
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"Im.mod",
|
| 35 |
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"Im_v2.mod",
|
| 36 |
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"K_P.mod",
|
| 37 |
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"K_T.mod",
|
| 38 |
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|
| 39 |
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|
| 40 |
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|
| 41 |
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|
| 42 |
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|
| 43 |
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|
| 44 |
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|
| 45 |
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|
| 46 |
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|
| 50 |
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|
| 51 |
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|
| 52 |
+
"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 53 |
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"synapse_delay_ms": 0.0,
|
| 54 |
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"synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)",
|
| 55 |
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"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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},
|
| 60 |
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|
| 61 |
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"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 62 |
+
"input_routing": {
|
| 63 |
+
"all_traces_identical": true,
|
| 64 |
+
"defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.",
|
| 65 |
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"duplicated_source_sites_per_sign": {
|
| 66 |
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"max": 0,
|
| 67 |
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|
| 68 |
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"min": 0
|
| 69 |
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|
| 70 |
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|
| 71 |
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|
| 72 |
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|
| 73 |
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|
| 74 |
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},
|
| 75 |
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|
| 76 |
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"policy": "source_site_preserving_normalized_arclength",
|
| 77 |
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|
| 78 |
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|
| 79 |
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|
| 80 |
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|
| 81 |
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|
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
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|
| 87 |
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|
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|
| 89 |
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|
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|
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|
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|
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|
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|
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|
| 96 |
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|
| 97 |
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|
| 98 |
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|
| 99 |
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"intervention": "inh_dropout",
|
| 100 |
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"intervention_dose": 0.35,
|
| 101 |
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"kind": "intervention",
|
| 102 |
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"morphology_id": "specimen_484559000",
|
| 103 |
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"morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_484559000/model",
|
| 104 |
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"samples": 2,
|
| 105 |
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|
| 106 |
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|
| 107 |
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}
|
minimal/interventions/inh_dropout_p35/specimen_484559000_intervention_pair_08876.npz
ADDED
|
@@ -0,0 +1,3 @@
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|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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oid sha256:edc60668ead9527e938b113265c587ecd57ca32df3dec0865d85ec69093e8a44
|
| 3 |
+
size 1243531
|
minimal/interventions/inh_dropout_p35/specimen_485574832_intervention_pair_02714.json
ADDED
|
@@ -0,0 +1,107 @@
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|
|
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|
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|
| 1 |
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| 10 |
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|
| 23 |
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|
| 24 |
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|
| 25 |
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|
| 26 |
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|
| 27 |
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|
| 28 |
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|
| 29 |
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|
| 30 |
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|
| 31 |
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|
| 32 |
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"DetGABA.mod",
|
| 33 |
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|
| 34 |
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|
| 35 |
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| 36 |
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|
| 37 |
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| 38 |
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| 40 |
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| 42 |
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| 44 |
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|
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|
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|
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|
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|
| 62 |
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| 63 |
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|
| 64 |
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"defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.",
|
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|
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|
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|
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|
| 86 |
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|
| 87 |
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|
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|
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|
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|
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|
| 98 |
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|
| 99 |
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|
| 100 |
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|
| 101 |
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|
| 102 |
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|
| 103 |
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| 104 |
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|
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|
| 107 |
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|
minimal/interventions/inh_dropout_p35/specimen_485574832_intervention_pair_02714.npz
ADDED
|
@@ -0,0 +1,3 @@
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| 1 |
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version https://git-lfs.github.com/spec/v1
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| 3 |
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size 1183934
|
minimal/interventions/inh_dropout_p35/specimen_485574832_intervention_pair_02715.json
ADDED
|
@@ -0,0 +1,107 @@
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|
|
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|
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|
|
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|
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|
|
|
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|
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|
| 1 |
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|
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|
| 10 |
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|
| 11 |
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|
| 26 |
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|
| 27 |
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|
| 28 |
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|
| 29 |
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|
| 30 |
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|
| 31 |
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|
| 32 |
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|
| 33 |
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|
| 34 |
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| 35 |
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| 36 |
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|
| 37 |
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|
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|
| 51 |
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|
| 52 |
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|
| 53 |
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|
| 54 |
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|
| 55 |
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| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
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|
| 64 |
+
"defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.",
|
| 65 |
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|
| 66 |
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|
| 67 |
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|
| 68 |
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|
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|
| 72 |
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|
| 73 |
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|
| 74 |
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|
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|
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|
| 77 |
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|
| 78 |
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|
| 80 |
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|
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|
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|
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|
| 84 |
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|
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|
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|
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|
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|
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|
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|
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|
| 99 |
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|
| 100 |
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|
| 101 |
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"kind": "intervention",
|
| 102 |
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|
| 103 |
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|
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|
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|
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|
| 107 |
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|
minimal/interventions/inh_dropout_p35/specimen_485574832_intervention_pair_02715.npz
ADDED
|
@@ -0,0 +1,3 @@
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| 1 |
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version https://git-lfs.github.com/spec/v1
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oid sha256:d804b17607b0423eb7511e03f37f4f4567d2b427d18f8afed1e8a63f291d437d
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| 3 |
+
size 1205262
|
minimal/interventions/inh_dropout_p35/specimen_485574832_intervention_pair_02716.json
ADDED
|
@@ -0,0 +1,107 @@
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|
| 1 |
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{
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|
| 9 |
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|
| 10 |
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"axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um",
|
| 11 |
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| 12 |
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| 16 |
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|
| 17 |
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| 18 |
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| 22 |
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|
| 23 |
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|
| 24 |
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|
| 25 |
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|
| 26 |
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|
| 27 |
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|
| 28 |
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|
| 29 |
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"Ca_HVA.mod",
|
| 30 |
+
"Ca_LVA.mod",
|
| 31 |
+
"DetAMPANMDA.mod",
|
| 32 |
+
"DetGABA.mod",
|
| 33 |
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"Ih.mod",
|
| 34 |
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"Im.mod",
|
| 35 |
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"Im_v2.mod",
|
| 36 |
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"K_P.mod",
|
| 37 |
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"K_T.mod",
|
| 38 |
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"Kd.mod",
|
| 39 |
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"Kv2like.mod",
|
| 40 |
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|
| 41 |
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|
| 42 |
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"NaTs.mod",
|
| 43 |
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"NaV.mod",
|
| 44 |
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|
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|
| 46 |
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|
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|
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|
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|
| 53 |
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|
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|
| 55 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
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|
| 64 |
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"defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.",
|
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|
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|
| 73 |
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|
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|
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|
| 76 |
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|
| 77 |
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|
| 78 |
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|
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|
| 80 |
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|
| 81 |
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|
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
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|
| 87 |
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|
| 88 |
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|
| 89 |
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|
| 90 |
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|
| 91 |
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|
| 92 |
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|
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|
| 94 |
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|
| 95 |
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|
| 96 |
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|
| 97 |
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}
|
| 98 |
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},
|
| 99 |
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"intervention": "inh_dropout",
|
| 100 |
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"intervention_dose": 0.35,
|
| 101 |
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"kind": "intervention",
|
| 102 |
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"morphology_id": "specimen_485574832",
|
| 103 |
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"morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_485574832/model",
|
| 104 |
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"samples": 2,
|
| 105 |
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|
| 106 |
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"teacher_balance_label": "axobench_ei_balanced"
|
| 107 |
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}
|
minimal/interventions/inh_dropout_p35/specimen_485574832_intervention_pair_02716.npz
ADDED
|
@@ -0,0 +1,3 @@
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|
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|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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| 2 |
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oid sha256:f29dad6df0de0122eee262e0ea01ab760740f95a0266c8a707b2fe8da2454250
|
| 3 |
+
size 1246529
|
minimal/interventions/inh_dropout_p35/specimen_485574832_intervention_pair_02717.json
ADDED
|
@@ -0,0 +1,107 @@
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|
|
|
|
|
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|
|
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|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
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|
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|
|
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|
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|
|
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|
|
|
|
|
|
|
|
|
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|
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|
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|
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|
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|
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|
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|
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|
| 1 |
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|
| 9 |
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|
| 10 |
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|
| 11 |
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|
| 12 |
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|
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|
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|
| 24 |
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|
| 25 |
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|
| 26 |
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|
| 27 |
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|
| 28 |
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|
| 29 |
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|
| 30 |
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|
| 31 |
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|
| 32 |
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"DetGABA.mod",
|
| 33 |
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|
| 34 |
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|
| 35 |
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|
| 36 |
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|
| 37 |
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|
| 38 |
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|
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|
| 51 |
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|
| 52 |
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|
| 53 |
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|
| 54 |
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|
| 55 |
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|
| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
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"all_traces_identical": true,
|
| 64 |
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"defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.",
|
| 65 |
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"duplicated_source_sites_per_sign": {
|
| 66 |
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|
| 67 |
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|
| 68 |
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|
| 69 |
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|
| 72 |
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|
| 73 |
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|
| 74 |
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|
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|
| 76 |
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|
| 77 |
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|
| 78 |
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|
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|
| 80 |
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|
| 81 |
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|
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|
| 83 |
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|
| 84 |
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|
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|
| 86 |
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|
| 87 |
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|
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|
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|
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|
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|
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|
| 99 |
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|
| 100 |
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|
| 101 |
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"kind": "intervention",
|
| 102 |
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"morphology_id": "specimen_485574832",
|
| 103 |
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|
| 104 |
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|
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|
| 106 |
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|
| 107 |
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}
|
minimal/interventions/inh_dropout_p35/specimen_485574832_intervention_pair_02717.npz
ADDED
|
@@ -0,0 +1,3 @@
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|
|
|
|
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|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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oid sha256:4f12c05f4efd3817d1ca97031a20a0a50c61c074d79a93a17d80782a88e872d9
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| 3 |
+
size 1196049
|
minimal/interventions/inh_dropout_p35/specimen_485574832_intervention_pair_02718.json
ADDED
|
@@ -0,0 +1,107 @@
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|
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|
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|
|
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|
| 1 |
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{
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|
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|
| 9 |
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|
| 10 |
+
"axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um",
|
| 11 |
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|
| 12 |
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|
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| 27 |
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|
| 28 |
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|
| 29 |
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| 30 |
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"Ca_LVA.mod",
|
| 31 |
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| 32 |
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| 33 |
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| 34 |
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| 40 |
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"Kv3_1.mod",
|
| 41 |
+
"NaTa.mod",
|
| 42 |
+
"NaTs.mod",
|
| 43 |
+
"NaV.mod",
|
| 44 |
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"Nap.mod",
|
| 45 |
+
"SK.mod"
|
| 46 |
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],
|
| 47 |
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"mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042",
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| 48 |
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| 49 |
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|
| 50 |
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|
| 51 |
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|
| 52 |
+
"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 53 |
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"synapse_delay_ms": 0.0,
|
| 54 |
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"synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)",
|
| 55 |
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"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
+
"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 62 |
+
"input_routing": {
|
| 63 |
+
"all_traces_identical": true,
|
| 64 |
+
"defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.",
|
| 65 |
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"duplicated_source_sites_per_sign": {
|
| 66 |
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|
| 67 |
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|
| 68 |
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|
| 69 |
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|
| 70 |
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|
| 71 |
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|
| 72 |
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|
| 73 |
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|
| 74 |
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},
|
| 75 |
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|
| 76 |
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"policy": "source_site_preserving_normalized_arclength",
|
| 77 |
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"source_sites_per_sign": {
|
| 78 |
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|
| 79 |
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|
| 80 |
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|
| 81 |
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},
|
| 82 |
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"status": "recorded",
|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
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"min": 639
|
| 87 |
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},
|
| 88 |
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"unused_source_sites_per_sign": {
|
| 89 |
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|
| 90 |
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|
| 91 |
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|
| 92 |
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|
| 93 |
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|
| 94 |
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|
| 95 |
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|
| 96 |
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"min": 639
|
| 97 |
+
}
|
| 98 |
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},
|
| 99 |
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"intervention": "inh_dropout",
|
| 100 |
+
"intervention_dose": 0.35,
|
| 101 |
+
"kind": "intervention",
|
| 102 |
+
"morphology_id": "specimen_485574832",
|
| 103 |
+
"morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_485574832/model",
|
| 104 |
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"samples": 2,
|
| 105 |
+
"shard_index": 2718,
|
| 106 |
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"teacher_balance_label": "axobench_ei_balanced"
|
| 107 |
+
}
|
minimal/interventions/inh_dropout_p35/specimen_485574832_intervention_pair_02718.npz
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
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oid sha256:b1b4a07192c107473c8a2b340c1e8e1c0147972d002a11e2c2294af669fb185b
|
| 3 |
+
size 1211785
|
minimal/interventions/inh_dropout_p35/specimen_485574832_intervention_pair_02719.json
ADDED
|
@@ -0,0 +1,107 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
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|
| 3 |
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|
| 4 |
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|
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|
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|
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|
| 8 |
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|
| 9 |
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|
| 10 |
+
"axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um",
|
| 11 |
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|
| 12 |
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|
| 13 |
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|
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|
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|
| 16 |
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|
| 17 |
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|
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|
| 19 |
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|
| 20 |
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|
| 21 |
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|
| 22 |
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|
| 23 |
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|
| 24 |
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"input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)",
|
| 25 |
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"integrator": "fixed_step",
|
| 26 |
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|
| 27 |
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"mechanism_files": [
|
| 28 |
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"CaDynamics.mod",
|
| 29 |
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"Ca_HVA.mod",
|
| 30 |
+
"Ca_LVA.mod",
|
| 31 |
+
"DetAMPANMDA.mod",
|
| 32 |
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"DetGABA.mod",
|
| 33 |
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"Ih.mod",
|
| 34 |
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"Im.mod",
|
| 35 |
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"Im_v2.mod",
|
| 36 |
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"K_P.mod",
|
| 37 |
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"K_T.mod",
|
| 38 |
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"Kd.mod",
|
| 39 |
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"Kv2like.mod",
|
| 40 |
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|
| 41 |
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"NaTa.mod",
|
| 42 |
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"NaTs.mod",
|
| 43 |
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"NaV.mod",
|
| 44 |
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|
| 45 |
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|
| 46 |
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|
| 47 |
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|
| 50 |
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|
| 51 |
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|
| 52 |
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"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 53 |
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"synapse_delay_ms": 0.0,
|
| 54 |
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"synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)",
|
| 55 |
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"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
|
| 56 |
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"teacher": "allen_all_active",
|
| 57 |
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|
| 58 |
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|
| 59 |
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},
|
| 60 |
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|
| 61 |
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"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 62 |
+
"input_routing": {
|
| 63 |
+
"all_traces_identical": true,
|
| 64 |
+
"defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.",
|
| 65 |
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"duplicated_source_sites_per_sign": {
|
| 66 |
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"max": 0,
|
| 67 |
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|
| 68 |
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|
| 69 |
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|
| 70 |
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|
| 71 |
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|
| 72 |
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|
| 73 |
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|
| 74 |
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},
|
| 75 |
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|
| 76 |
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"policy": "source_site_preserving_normalized_arclength",
|
| 77 |
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|
| 78 |
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|
| 79 |
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|
| 80 |
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|
| 81 |
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},
|
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
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|
| 87 |
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|
| 88 |
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|
| 89 |
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|
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|
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|
| 92 |
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|
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|
| 95 |
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|
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|
| 97 |
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|
| 98 |
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},
|
| 99 |
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"intervention": "inh_dropout",
|
| 100 |
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"intervention_dose": 0.35,
|
| 101 |
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"kind": "intervention",
|
| 102 |
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"morphology_id": "specimen_485574832",
|
| 103 |
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"morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_485574832/model",
|
| 104 |
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"samples": 2,
|
| 105 |
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|
| 106 |
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"teacher_balance_label": "axobench_ei_balanced"
|
| 107 |
+
}
|
minimal/interventions/inh_dropout_p35/specimen_485574832_intervention_pair_02719.npz
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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| 2 |
+
oid sha256:ec95dc6c947de1e6c955b449722e838f7c3353f9b614295c6859b448d910b6a1
|
| 3 |
+
size 1186160
|
minimal/interventions/inh_dropout_p35/specimen_485574832_intervention_pair_02720.json
ADDED
|
@@ -0,0 +1,107 @@
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|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
|
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|
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|
|
|
|
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|
|
|
|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
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|
|
|
|
|
|
|
|
|
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|
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|
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|
|
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|
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|
|
|
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|
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|
|
|
|
|
|
|
|
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|
|
|
|
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|
|
|
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|
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|
| 1 |
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{
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|
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|
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|
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|
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|
| 9 |
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|
| 10 |
+
"axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um",
|
| 11 |
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|
| 12 |
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|
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|
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|
| 24 |
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|
| 26 |
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|
| 27 |
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"mechanism_files": [
|
| 28 |
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"CaDynamics.mod",
|
| 29 |
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"Ca_HVA.mod",
|
| 30 |
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"Ca_LVA.mod",
|
| 31 |
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"DetAMPANMDA.mod",
|
| 32 |
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"DetGABA.mod",
|
| 33 |
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"Ih.mod",
|
| 34 |
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"Im.mod",
|
| 35 |
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"Im_v2.mod",
|
| 36 |
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"K_P.mod",
|
| 37 |
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"K_T.mod",
|
| 38 |
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"Kd.mod",
|
| 39 |
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"Kv2like.mod",
|
| 40 |
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"Kv3_1.mod",
|
| 41 |
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"NaTa.mod",
|
| 42 |
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"NaTs.mod",
|
| 43 |
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"NaV.mod",
|
| 44 |
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"Nap.mod",
|
| 45 |
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"SK.mod"
|
| 46 |
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],
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| 47 |
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"mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042",
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| 50 |
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|
| 51 |
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"soma_samples_per_ms": 4,
|
| 52 |
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"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 53 |
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"synapse_delay_ms": 0.0,
|
| 54 |
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"synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)",
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| 55 |
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"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
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| 56 |
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|
| 57 |
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|
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
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|
| 64 |
+
"defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.",
|
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|
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|
| 68 |
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|
| 69 |
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|
| 71 |
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|
| 72 |
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|
| 73 |
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|
| 74 |
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|
| 75 |
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|
| 76 |
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|
| 77 |
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|
| 78 |
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|
| 79 |
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|
| 80 |
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|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
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|
| 87 |
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|
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|
| 89 |
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|
| 90 |
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|
| 91 |
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|
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|
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|
| 94 |
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|
| 95 |
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|
| 96 |
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|
| 97 |
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}
|
| 98 |
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},
|
| 99 |
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"intervention": "inh_dropout",
|
| 100 |
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"intervention_dose": 0.35,
|
| 101 |
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"kind": "intervention",
|
| 102 |
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"morphology_id": "specimen_485574832",
|
| 103 |
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"morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_485574832/model",
|
| 104 |
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"samples": 2,
|
| 105 |
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|
| 106 |
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"teacher_balance_label": "axobench_ei_balanced"
|
| 107 |
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}
|
minimal/interventions/inh_dropout_p35/specimen_485574832_intervention_pair_02720.npz
ADDED
|
@@ -0,0 +1,3 @@
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|
| 1 |
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version https://git-lfs.github.com/spec/v1
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oid sha256:4ca222c396eeb495cf11038b7f67dd95eaed51c39e3cc42f46e6807ce9716b70
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| 3 |
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size 1165116
|
minimal/interventions/inh_dropout_p35/specimen_485574832_intervention_pair_02721.json
ADDED
|
@@ -0,0 +1,107 @@
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
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|
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|
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|
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|
|
|
|
|
|
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|
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|
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|
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|
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|
| 1 |
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|
| 10 |
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|
| 11 |
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|
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|
| 24 |
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|
| 25 |
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|
| 26 |
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|
| 27 |
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|
| 28 |
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|
| 29 |
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"Ca_HVA.mod",
|
| 30 |
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"Ca_LVA.mod",
|
| 31 |
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|
| 32 |
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"DetGABA.mod",
|
| 33 |
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|
| 34 |
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| 35 |
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|
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|
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|
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|
| 51 |
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|
| 52 |
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|
| 53 |
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|
| 54 |
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"synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)",
|
| 55 |
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"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
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| 56 |
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|
| 57 |
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|
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|
| 59 |
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|
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|
| 61 |
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|
| 62 |
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|
| 63 |
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|
| 64 |
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"defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.",
|
| 65 |
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|
| 66 |
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|
| 67 |
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| 68 |
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|
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|
| 72 |
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|
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|
| 74 |
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|
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|
| 76 |
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|
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|
| 78 |
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|
| 80 |
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|
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|
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|
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|
| 84 |
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|
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|
| 86 |
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|
| 87 |
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|
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|
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|
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|
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|
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|
| 99 |
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"intervention": "inh_dropout",
|
| 100 |
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|
| 101 |
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"kind": "intervention",
|
| 102 |
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|
| 103 |
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| 104 |
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|
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|
| 106 |
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|
| 107 |
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}
|
minimal/interventions/inh_dropout_p35/specimen_485574832_intervention_pair_02721.npz
ADDED
|
@@ -0,0 +1,3 @@
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|
|
|
|
|
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|
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|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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oid sha256:d7213cbc22f70ee4584ae2333564f88f420e8648831a5f90835791760f21b49f
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| 3 |
+
size 1183714
|
minimal/interventions/inh_dropout_p35/specimen_485574832_intervention_pair_02722.json
ADDED
|
@@ -0,0 +1,107 @@
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|
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|
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|
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|
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|
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|
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|
|
|
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|
|
|
|
|
|
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|
|
|
|
|
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|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
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|
|
|
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|
|
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|
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|
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|
|
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|
|
|
|
|
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|
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|
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{
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|
| 9 |
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|
| 10 |
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|
| 11 |
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|
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| 26 |
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|
| 27 |
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|
| 28 |
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|
| 29 |
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|
| 30 |
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|
| 31 |
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|
| 32 |
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|
| 33 |
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|
| 34 |
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| 35 |
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|
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|
| 37 |
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|
| 38 |
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|
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|
| 40 |
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|
| 41 |
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|
| 42 |
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|
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|
| 44 |
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|
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|
| 46 |
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],
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|
| 51 |
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|
| 52 |
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"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 53 |
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"synapse_delay_ms": 0.0,
|
| 54 |
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"synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)",
|
| 55 |
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"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
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| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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},
|
| 60 |
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|
| 61 |
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"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 62 |
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"input_routing": {
|
| 63 |
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"all_traces_identical": true,
|
| 64 |
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"defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.",
|
| 65 |
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|
| 66 |
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|
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|
| 87 |
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|
| 88 |
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|
| 89 |
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|
| 90 |
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|
| 91 |
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|
| 92 |
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|
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|
| 94 |
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|
| 95 |
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|
| 96 |
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|
| 97 |
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|
| 98 |
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|
| 99 |
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|
| 100 |
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|
| 101 |
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|
| 102 |
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|
| 103 |
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|
| 104 |
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|
| 105 |
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|
| 106 |
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|
| 107 |
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}
|
minimal/interventions/inh_dropout_p35/specimen_485574832_intervention_pair_02722.npz
ADDED
|
@@ -0,0 +1,3 @@
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| 1 |
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version https://git-lfs.github.com/spec/v1
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| 3 |
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size 1241540
|
minimal/interventions/inh_dropout_p35/specimen_485574832_intervention_pair_02723.json
ADDED
|
@@ -0,0 +1,107 @@
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|
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|
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|
|
|
|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
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|
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|
|
|
|
|
|
|
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|
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|
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|
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|
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|
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|
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|
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|
|
|
|
|
|
|
|
|
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|
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|
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|
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|
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|
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|
| 10 |
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|
| 11 |
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|
| 24 |
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|
| 25 |
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|
| 26 |
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|
| 27 |
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|
| 28 |
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|
| 29 |
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|
| 30 |
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"Ca_LVA.mod",
|
| 31 |
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|
| 32 |
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"DetGABA.mod",
|
| 33 |
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|
| 34 |
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|
| 35 |
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|
| 36 |
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|
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| 51 |
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|
| 53 |
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|
| 54 |
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|
| 55 |
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| 57 |
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|
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|
| 59 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
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"all_traces_identical": true,
|
| 64 |
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"defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.",
|
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|
| 66 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 100 |
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|
| 101 |
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|
| 102 |
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|
| 103 |
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|
| 104 |
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|
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|
| 106 |
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|
| 107 |
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}
|
minimal/interventions/inh_dropout_p35/specimen_485574832_intervention_pair_02723.npz
ADDED
|
@@ -0,0 +1,3 @@
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|
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|
|
|
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|
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|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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oid sha256:687f6aa3d450f401c842ec24bccba0e66ce524081c2005b64a3732d91586a74c
|
| 3 |
+
size 1215313
|
minimal/interventions/inh_dropout_p35/specimen_485574832_intervention_pair_02724.json
ADDED
|
@@ -0,0 +1,107 @@
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|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
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|
|
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|
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|
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|
|
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|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
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|
|
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|
|
|
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|
|
|
|
|
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|
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{
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|
| 9 |
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|
| 10 |
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|
| 11 |
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| 26 |
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|
| 27 |
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|
| 28 |
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|
| 29 |
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|
| 30 |
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|
| 31 |
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|
| 51 |
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|
| 52 |
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|
| 53 |
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|
| 54 |
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| 55 |
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"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
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| 56 |
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| 57 |
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|
| 58 |
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|
| 59 |
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|
| 60 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
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|
| 64 |
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"defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.",
|
| 65 |
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|
| 66 |
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|
| 67 |
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|
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|
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|
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|
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|
| 101 |
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|
| 102 |
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|
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|
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|
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|
| 107 |
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}
|
minimal/interventions/inh_dropout_p35/specimen_485574832_intervention_pair_02724.npz
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
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size 1241419
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minimal/interventions/inh_dropout_p35/specimen_485574832_intervention_pair_02725.json
ADDED
|
@@ -0,0 +1,107 @@
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|
|
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|
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|
|
|
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|
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|
|
|
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|
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|
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|
|
|
|
|
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|
|
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|
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|
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|
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|
|
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|
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|
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|
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|
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| 1 |
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|
| 10 |
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|
| 11 |
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|
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|
| 24 |
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|
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|
| 26 |
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|
| 27 |
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|
| 28 |
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|
| 29 |
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|
| 30 |
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"Ca_LVA.mod",
|
| 31 |
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|
| 32 |
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"DetGABA.mod",
|
| 33 |
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"Ih.mod",
|
| 34 |
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| 35 |
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| 36 |
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|
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"synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)",
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| 55 |
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"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
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| 56 |
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| 57 |
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| 59 |
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|
| 61 |
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"input_event_policy": "source_neuronio_sampler_unmodified",
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| 62 |
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"input_routing": {
|
| 63 |
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"all_traces_identical": true,
|
| 64 |
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"defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.",
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"duplicated_source_sites_per_sign": {
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| 66 |
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|
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|
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|
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|
| 76 |
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| 77 |
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| 78 |
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|
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| 84 |
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|
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|
| 86 |
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|
| 87 |
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|
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|
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|
| 99 |
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|
| 100 |
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|
| 101 |
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"kind": "intervention",
|
| 102 |
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"morphology_id": "specimen_485574832",
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| 104 |
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|
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| 107 |
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|
minimal/interventions/inh_dropout_p35/specimen_485574832_intervention_pair_02725.npz
ADDED
|
@@ -0,0 +1,3 @@
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version https://git-lfs.github.com/spec/v1
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| 3 |
+
size 1249474
|
minimal/interventions/inh_dropout_p35/specimen_485574832_intervention_pair_02726.json
ADDED
|
@@ -0,0 +1,107 @@
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|
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|
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|
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|
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|
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|
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|
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|
|
|
|
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|
|
|
|
|
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|
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|
|
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|
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|
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|
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|
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|
|
|
|
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|
| 1 |
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{
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|
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|
| 10 |
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"axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um",
|
| 11 |
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|
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|
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|
| 23 |
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|
| 24 |
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|
| 25 |
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|
| 26 |
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|
| 27 |
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"mechanism_files": [
|
| 28 |
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"CaDynamics.mod",
|
| 29 |
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"Ca_HVA.mod",
|
| 30 |
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"Ca_LVA.mod",
|
| 31 |
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"DetAMPANMDA.mod",
|
| 32 |
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"DetGABA.mod",
|
| 33 |
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"Ih.mod",
|
| 34 |
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"Im.mod",
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| 35 |
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"Im_v2.mod",
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| 36 |
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|
| 37 |
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|
| 38 |
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| 40 |
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|
| 41 |
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|
| 42 |
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|
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|
| 44 |
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| 46 |
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| 50 |
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|
| 51 |
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|
| 52 |
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"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 53 |
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|
| 54 |
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"synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)",
|
| 55 |
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"synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)",
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| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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},
|
| 60 |
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|
| 61 |
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"input_event_policy": "source_neuronio_sampler_unmodified",
|
| 62 |
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"input_routing": {
|
| 63 |
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"all_traces_identical": true,
|
| 64 |
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"defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.",
|
| 65 |
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"duplicated_source_sites_per_sign": {
|
| 66 |
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"max": 0,
|
| 67 |
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|
| 68 |
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|
| 69 |
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| 70 |
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|
| 71 |
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|
| 72 |
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|
| 73 |
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|
| 74 |
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},
|
| 75 |
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|
| 76 |
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"policy": "source_site_preserving_normalized_arclength",
|
| 77 |
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|
| 78 |
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|
| 79 |
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|
| 80 |
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|
| 81 |
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},
|
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|
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|
| 84 |
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|
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|
| 86 |
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|
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|
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|
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|
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|
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|
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|
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|
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|
| 96 |
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|
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|
| 98 |
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},
|
| 99 |
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"intervention": "inh_dropout",
|
| 100 |
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"intervention_dose": 0.35,
|
| 101 |
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"kind": "intervention",
|
| 102 |
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"morphology_id": "specimen_485574832",
|
| 103 |
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|
| 104 |
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"samples": 2,
|
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|
| 106 |
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|
| 107 |
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}
|
minimal/interventions/inh_dropout_p35/specimen_485574832_intervention_pair_02726.npz
ADDED
|
@@ -0,0 +1,3 @@
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|
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|
|
|
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|
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|
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|
| 1 |
+
version https://git-lfs.github.com/spec/v1
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oid sha256:56c44499bed699489d24a8fcbe005730f94dca57212c9283901498e487d7703e
|
| 3 |
+
size 1197590
|
minimal/interventions/inh_dropout_p35/specimen_485574832_intervention_pair_02727.json
ADDED
|
@@ -0,0 +1,107 @@
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|
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|
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|
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|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
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|
|
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|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
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{
|
| 2 |
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| 3 |
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|
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|
| 10 |
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|
| 11 |
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| 12 |
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|
| 13 |
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|
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| 19 |
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| 22 |
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|
| 23 |
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|
| 24 |
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|
| 25 |
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|
| 26 |
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|
| 27 |
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|
| 28 |
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"CaDynamics.mod",
|
| 29 |
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"Ca_HVA.mod",
|
| 30 |
+
"Ca_LVA.mod",
|
| 31 |
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"DetAMPANMDA.mod",
|
| 32 |
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"DetGABA.mod",
|
| 33 |
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"Ih.mod",
|
| 34 |
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"Im.mod",
|
| 35 |
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"Im_v2.mod",
|
| 36 |
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"K_P.mod",
|
| 37 |
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"K_T.mod",
|
| 38 |
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"Kd.mod",
|
| 39 |
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|
| 40 |
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|
| 41 |
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|
| 42 |
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"NaTs.mod",
|
| 43 |
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"NaV.mod",
|
| 44 |
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|
| 45 |
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|
| 46 |
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| 47 |
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| 50 |
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|
| 51 |
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|
| 52 |
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"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 53 |
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|
| 54 |
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"synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)",
|
| 55 |
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| 56 |
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| 57 |
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| 59 |
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| 60 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
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"all_traces_identical": true,
|
| 64 |
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"defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.",
|
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| 66 |
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|
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|
| 72 |
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|
| 73 |
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|
| 74 |
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| 75 |
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|
| 76 |
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"policy": "source_site_preserving_normalized_arclength",
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| 77 |
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|
| 78 |
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|
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| 80 |
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|
| 81 |
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|
| 82 |
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|
| 83 |
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|
| 84 |
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|
| 85 |
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|
| 86 |
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|
| 87 |
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|
| 88 |
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|
| 89 |
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|
| 90 |
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|
| 91 |
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|
| 92 |
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|
| 93 |
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|
| 94 |
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|
| 95 |
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|
| 96 |
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|
| 97 |
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|
| 98 |
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|
| 99 |
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"intervention": "inh_dropout",
|
| 100 |
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"intervention_dose": 0.35,
|
| 101 |
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"kind": "intervention",
|
| 102 |
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"morphology_id": "specimen_485574832",
|
| 103 |
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"morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_485574832/model",
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| 104 |
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|
| 105 |
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|
| 106 |
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"teacher_balance_label": "axobench_ei_balanced"
|
| 107 |
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|
minimal/interventions/inh_dropout_p35/specimen_485574832_intervention_pair_02727.npz
ADDED
|
@@ -0,0 +1,3 @@
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|
| 1 |
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version https://git-lfs.github.com/spec/v1
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oid sha256:9a2d58bc8b8d458393b9350237f746829a4327b95edd3ea216eb1213584692a5
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| 3 |
+
size 1202261
|
minimal/interventions/inh_dropout_p35/specimen_485574832_intervention_pair_02728.json
ADDED
|
@@ -0,0 +1,107 @@
|
|
|
|
|
|
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|
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|
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|
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|
|
|
|
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|
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|
|
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|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
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|
|
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|
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|
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|
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|
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|
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|
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|
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|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
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|
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|
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|
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|
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|
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|
|
|
|
|
|
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|
| 1 |
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{
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|
| 3 |
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|
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|
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|
| 9 |
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|
| 10 |
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|
| 11 |
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|
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|
| 24 |
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| 25 |
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|
| 26 |
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|
| 27 |
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|
| 28 |
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|
| 29 |
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|
| 30 |
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|
| 31 |
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|
| 32 |
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| 33 |
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|
| 34 |
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| 35 |
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| 36 |
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| 37 |
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|
| 38 |
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|
| 40 |
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|
| 41 |
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|
| 42 |
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| 43 |
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|
| 44 |
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| 50 |
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|
| 51 |
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|
| 52 |
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"spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)",
|
| 53 |
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|
| 54 |
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"synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)",
|
| 55 |
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| 56 |
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|
| 57 |
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|
| 58 |
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|
| 59 |
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},
|
| 60 |
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|
| 61 |
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|
| 62 |
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|
| 63 |
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"all_traces_identical": true,
|
| 64 |
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"defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.",
|
| 65 |
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"duplicated_source_sites_per_sign": {
|
| 66 |
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|
| 67 |
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|
| 68 |
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|
| 69 |
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|
| 70 |
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|
| 71 |
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|
| 72 |
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|
| 73 |
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|
| 74 |
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|
| 75 |
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|
| 76 |
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"policy": "source_site_preserving_normalized_arclength",
|
| 77 |
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|
| 78 |
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|
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|
| 80 |
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|
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|
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|
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| 84 |
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|
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|
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|
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|
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|
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|
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|
| 100 |
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|
| 101 |
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|
| 102 |
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|
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|
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|
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|
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