diff --git a/minimal/interventions/temporal_jitter_j1/manifest.json b/minimal/interventions/temporal_jitter_j1/manifest.json new file mode 100644 index 0000000000000000000000000000000000000000..5dcd93a4b03393a5c5d9a18125805353d05639fb --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/manifest.json @@ -0,0 +1,2405 @@ +{ + "pair_shards": [ + { + "count": 2, + "file": "neuronio_hay_cell1_intervention_pair_00838.npz", + "sample_ids": [ + "neuronio_hay_cell1:intervention:temporal_jitter@1:00838:0000:seed1347030576", + "neuronio_hay_cell1:intervention:temporal_jitter@1:00838:0001:seed339832281" + ] + }, + { + "count": 2, + "file": "neuronio_hay_cell1_intervention_pair_00839.npz", + "sample_ids": [ + "neuronio_hay_cell1:intervention:temporal_jitter@1:00839:0000:seed1479548642", + "neuronio_hay_cell1:intervention:temporal_jitter@1:00839:0001:seed1786217100" + ] + }, + { + "count": 2, + "file": "neuronio_hay_cell1_intervention_pair_00840.npz", + "sample_ids": [ + "neuronio_hay_cell1:intervention:temporal_jitter@1:00840:0000:seed781761018", + "neuronio_hay_cell1:intervention:temporal_jitter@1:00840:0001:seed956034993" + ] + }, + { + "count": 2, + "file": "neuronio_hay_cell1_intervention_pair_00841.npz", + "sample_ids": [ + "neuronio_hay_cell1:intervention:temporal_jitter@1:00841:0000:seed370506716", + "neuronio_hay_cell1:intervention:temporal_jitter@1:00841:0001:seed735024540" + ] + }, + { + "count": 2, + "file": "neuronio_hay_cell1_intervention_pair_00842.npz", + "sample_ids": [ + "neuronio_hay_cell1:intervention:temporal_jitter@1:00842:0000:seed1979317745", + "neuronio_hay_cell1:intervention:temporal_jitter@1:00842:0001:seed475105226" + ] + }, + { + "count": 2, + "file": "neuronio_hay_cell1_intervention_pair_00843.npz", + "sample_ids": [ + "neuronio_hay_cell1:intervention:temporal_jitter@1:00843:0000:seed1794331659", + "neuronio_hay_cell1:intervention:temporal_jitter@1:00843:0001:seed1851730060" + ] + }, + { + "count": 2, + "file": "neuronio_hay_cell1_intervention_pair_00844.npz", + "sample_ids": [ + "neuronio_hay_cell1:intervention:temporal_jitter@1:00844:0000:seed57272312", + "neuronio_hay_cell1:intervention:temporal_jitter@1:00844:0001:seed1604003481" + ] + }, + { + "count": 2, + "file": "neuronio_hay_cell1_intervention_pair_00845.npz", + "sample_ids": [ + "neuronio_hay_cell1:intervention:temporal_jitter@1:00845:0000:seed1024848187", + "neuronio_hay_cell1:intervention:temporal_jitter@1:00845:0001:seed843128868" + ] + }, + { + "count": 2, + "file": "neuronio_hay_cell1_intervention_pair_00846.npz", + "sample_ids": [ + "neuronio_hay_cell1:intervention:temporal_jitter@1:00846:0000:seed404597945", + "neuronio_hay_cell1:intervention:temporal_jitter@1:00846:0001:seed911246090" + ] + }, + { + "count": 2, + "file": "neuronio_hay_cell1_intervention_pair_00847.npz", + "sample_ids": [ + "neuronio_hay_cell1:intervention:temporal_jitter@1:00847:0000:seed918991381", + "neuronio_hay_cell1:intervention:temporal_jitter@1:00847:0001:seed1591568749" + ] + }, + { + "count": 2, + "file": "neuronio_hay_cell1_intervention_pair_00848.npz", + "sample_ids": [ + "neuronio_hay_cell1:intervention:temporal_jitter@1:00848:0000:seed669711687", + "neuronio_hay_cell1:intervention:temporal_jitter@1:00848:0001:seed530367560" + ] + }, + { + "count": 2, + "file": "neuronio_hay_cell1_intervention_pair_00849.npz", + "sample_ids": [ + "neuronio_hay_cell1:intervention:temporal_jitter@1:00849:0000:seed671273166", + "neuronio_hay_cell1:intervention:temporal_jitter@1:00849:0001:seed658188845" + ] + }, + { + "count": 2, + "file": "neuronio_hay_cell1_intervention_pair_00850.npz", + "sample_ids": [ + "neuronio_hay_cell1:intervention:temporal_jitter@1:00850:0000:seed960002139", + "neuronio_hay_cell1:intervention:temporal_jitter@1:00850:0001:seed1355632306" + ] + }, + { + "count": 2, + "file": "neuronio_hay_cell1_intervention_pair_00851.npz", + "sample_ids": [ + "neuronio_hay_cell1:intervention:temporal_jitter@1:00851:0000:seed2140369196", + "neuronio_hay_cell1:intervention:temporal_jitter@1:00851:0001:seed81199098" + ] + }, + { + "count": 2, + "file": "neuronio_hay_cell1_intervention_pair_00852.npz", + "sample_ids": [ + "neuronio_hay_cell1:intervention:temporal_jitter@1:00852:0000:seed1309307935", + "neuronio_hay_cell1:intervention:temporal_jitter@1:00852:0001:seed125294885" + ] + }, + { + "count": 2, + "file": "neuronio_hay_cell1_intervention_pair_00853.npz", + "sample_ids": [ + "neuronio_hay_cell1:intervention:temporal_jitter@1:00853:0000:seed1134372859", + "neuronio_hay_cell1:intervention:temporal_jitter@1:00853:0001:seed1920827447" + ] + }, + { + "count": 2, + "file": "neuronio_hay_cell1_intervention_pair_00854.npz", + "sample_ids": [ + "neuronio_hay_cell1:intervention:temporal_jitter@1:00854:0000:seed942203428", + "neuronio_hay_cell1:intervention:temporal_jitter@1:00854:0001:seed1437696659" + ] + }, + { + "count": 2, + "file": "neuronio_hay_cell1_intervention_pair_00855.npz", + "sample_ids": [ + "neuronio_hay_cell1:intervention:temporal_jitter@1:00855:0000:seed614382238", + "neuronio_hay_cell1:intervention:temporal_jitter@1:00855:0001:seed861383738" + ] + }, + { + "count": 2, + "file": "neuronio_hay_cell1_intervention_pair_00856.npz", + "sample_ids": [ + "neuronio_hay_cell1:intervention:temporal_jitter@1:00856:0000:seed1883974732", + "neuronio_hay_cell1:intervention:temporal_jitter@1:00856:0001:seed1140653342" + ] + }, + { + "count": 2, + "file": "neuronio_hay_cell1_intervention_pair_00857.npz", + "sample_ids": [ + "neuronio_hay_cell1:intervention:temporal_jitter@1:00857:0000:seed123456645", + "neuronio_hay_cell1:intervention:temporal_jitter@1:00857:0001:seed2006169783" + ] + }, + { + "count": 2, + "file": "specimen_314822529_intervention_pair_04107.npz", + "sample_ids": [ + "specimen_314822529:intervention:temporal_jitter@1:04107:0000:seed1291483966", + "specimen_314822529:intervention:temporal_jitter@1:04107:0001:seed1618422601" + ] + }, + { + "count": 2, + "file": "specimen_314822529_intervention_pair_04108.npz", + "sample_ids": [ + "specimen_314822529:intervention:temporal_jitter@1:04108:0000:seed950346721", + "specimen_314822529:intervention:temporal_jitter@1:04108:0001:seed1886924880" + ] + }, + { + "count": 2, + "file": "specimen_314822529_intervention_pair_04109.npz", + "sample_ids": [ + "specimen_314822529:intervention:temporal_jitter@1:04109:0000:seed1513796258", + "specimen_314822529:intervention:temporal_jitter@1:04109:0001:seed466285087" + ] + }, + { + "count": 2, + "file": "specimen_314822529_intervention_pair_04110.npz", + "sample_ids": [ + "specimen_314822529:intervention:temporal_jitter@1:04110:0000:seed1961768426", + "specimen_314822529:intervention:temporal_jitter@1:04110:0001:seed1071369641" + ] + }, + { + "count": 2, + "file": "specimen_314822529_intervention_pair_04111.npz", + "sample_ids": [ + "specimen_314822529:intervention:temporal_jitter@1:04111:0000:seed1872061888", + "specimen_314822529:intervention:temporal_jitter@1:04111:0001:seed440025771" + ] + }, + { + "count": 2, + "file": "specimen_314822529_intervention_pair_04112.npz", + "sample_ids": [ + "specimen_314822529:intervention:temporal_jitter@1:04112:0000:seed923541139", + "specimen_314822529:intervention:temporal_jitter@1:04112:0001:seed1117896214" + ] + }, + { + "count": 2, + "file": "specimen_314822529_intervention_pair_04113.npz", + "sample_ids": [ + "specimen_314822529:intervention:temporal_jitter@1:04113:0000:seed1733130055", + "specimen_314822529:intervention:temporal_jitter@1:04113:0001:seed1023876294" + ] + }, + { + "count": 2, + "file": "specimen_314822529_intervention_pair_04114.npz", + "sample_ids": [ + "specimen_314822529:intervention:temporal_jitter@1:04114:0000:seed1279840797", + "specimen_314822529:intervention:temporal_jitter@1:04114:0001:seed2130310406" + ] + }, + { + "count": 2, + "file": "specimen_314822529_intervention_pair_04115.npz", + "sample_ids": [ + "specimen_314822529:intervention:temporal_jitter@1:04115:0000:seed54276144", + "specimen_314822529:intervention:temporal_jitter@1:04115:0001:seed969295278" + ] + }, + { + "count": 2, + "file": "specimen_314822529_intervention_pair_04116.npz", + "sample_ids": [ + "specimen_314822529:intervention:temporal_jitter@1:04116:0000:seed1355903153", + "specimen_314822529:intervention:temporal_jitter@1:04116:0001:seed1011109430" + ] + }, + { + "count": 2, + "file": "specimen_314822529_intervention_pair_04117.npz", + "sample_ids": [ + "specimen_314822529:intervention:temporal_jitter@1:04117:0000:seed569139809", + "specimen_314822529:intervention:temporal_jitter@1:04117:0001:seed1057272544" + ] + }, + { + "count": 2, + "file": "specimen_314822529_intervention_pair_04118.npz", + "sample_ids": [ + "specimen_314822529:intervention:temporal_jitter@1:04118:0000:seed1168892260", + "specimen_314822529:intervention:temporal_jitter@1:04118:0001:seed317195548" + ] + }, + { + "count": 2, + "file": "specimen_314822529_intervention_pair_04119.npz", + "sample_ids": [ + "specimen_314822529:intervention:temporal_jitter@1:04119:0000:seed961092775", + "specimen_314822529:intervention:temporal_jitter@1:04119:0001:seed1982954282" + ] + }, + { + "count": 2, + "file": "specimen_314822529_intervention_pair_04120.npz", + "sample_ids": [ + "specimen_314822529:intervention:temporal_jitter@1:04120:0000:seed1613736176", + "specimen_314822529:intervention:temporal_jitter@1:04120:0001:seed1919946889" + ] + }, + { + "count": 2, + "file": "specimen_314822529_intervention_pair_04121.npz", + "sample_ids": [ + "specimen_314822529:intervention:temporal_jitter@1:04121:0000:seed949414228", + "specimen_314822529:intervention:temporal_jitter@1:04121:0001:seed1436245661" + ] + }, + { + "count": 2, + "file": "specimen_314822529_intervention_pair_04122.npz", + "sample_ids": [ + "specimen_314822529:intervention:temporal_jitter@1:04122:0000:seed1326600914", + "specimen_314822529:intervention:temporal_jitter@1:04122:0001:seed1030954763" + ] + }, + { + "count": 2, + "file": "specimen_314822529_intervention_pair_04123.npz", + "sample_ids": [ + "specimen_314822529:intervention:temporal_jitter@1:04123:0000:seed736759729", + "specimen_314822529:intervention:temporal_jitter@1:04123:0001:seed272111032" + ] + }, + { + "count": 2, + "file": "specimen_314822529_intervention_pair_04124.npz", + "sample_ids": [ + "specimen_314822529:intervention:temporal_jitter@1:04124:0000:seed274044184", + "specimen_314822529:intervention:temporal_jitter@1:04124:0001:seed461349369" + ] + }, + { + "count": 2, + "file": "specimen_314822529_intervention_pair_04125.npz", + "sample_ids": [ + "specimen_314822529:intervention:temporal_jitter@1:04125:0000:seed1451720239", + "specimen_314822529:intervention:temporal_jitter@1:04125:0001:seed1577227380" + ] + }, + { + "count": 2, + "file": "specimen_314822529_intervention_pair_04126.npz", + "sample_ids": [ + "specimen_314822529:intervention:temporal_jitter@1:04126:0000:seed931337254", + "specimen_314822529:intervention:temporal_jitter@1:04126:0001:seed165695078" + ] + }, + { + "count": 2, + "file": "specimen_314831019_intervention_pair_12561.npz", + "sample_ids": [ + "specimen_314831019:intervention:temporal_jitter@1:12561:0000:seed875228350", + "specimen_314831019:intervention:temporal_jitter@1:12561:0001:seed2067374182" + ] + }, + { + "count": 2, + "file": "specimen_314831019_intervention_pair_12562.npz", + "sample_ids": [ + "specimen_314831019:intervention:temporal_jitter@1:12562:0000:seed284252484", + "specimen_314831019:intervention:temporal_jitter@1:12562:0001:seed2079709366" + ] + }, + { + "count": 2, + "file": "specimen_314831019_intervention_pair_12563.npz", + "sample_ids": [ + "specimen_314831019:intervention:temporal_jitter@1:12563:0000:seed1255748377", + "specimen_314831019:intervention:temporal_jitter@1:12563:0001:seed1485895606" + ] + }, + { + "count": 2, + "file": "specimen_314831019_intervention_pair_12564.npz", + "sample_ids": [ + "specimen_314831019:intervention:temporal_jitter@1:12564:0000:seed1858643802", + "specimen_314831019:intervention:temporal_jitter@1:12564:0001:seed1047313644" + ] + }, + { + "count": 2, + "file": "specimen_314831019_intervention_pair_12565.npz", + "sample_ids": [ + "specimen_314831019:intervention:temporal_jitter@1:12565:0000:seed185301976", + "specimen_314831019:intervention:temporal_jitter@1:12565:0001:seed1960371385" + ] + }, + { + "count": 2, + "file": "specimen_314831019_intervention_pair_12566.npz", + "sample_ids": [ + "specimen_314831019:intervention:temporal_jitter@1:12566:0000:seed1658488789", + "specimen_314831019:intervention:temporal_jitter@1:12566:0001:seed1019868532" + ] + }, + { + "count": 2, + "file": "specimen_314831019_intervention_pair_12567.npz", + "sample_ids": [ + "specimen_314831019:intervention:temporal_jitter@1:12567:0000:seed2052127382", + "specimen_314831019:intervention:temporal_jitter@1:12567:0001:seed251099106" + ] + }, + { + "count": 2, + "file": "specimen_314831019_intervention_pair_12568.npz", + "sample_ids": [ + "specimen_314831019:intervention:temporal_jitter@1:12568:0000:seed624581981", + "specimen_314831019:intervention:temporal_jitter@1:12568:0001:seed947645863" + ] + }, + { + "count": 2, + "file": "specimen_314831019_intervention_pair_12569.npz", + "sample_ids": [ + "specimen_314831019:intervention:temporal_jitter@1:12569:0000:seed166063042", + "specimen_314831019:intervention:temporal_jitter@1:12569:0001:seed416718958" + ] + }, + { + "count": 2, + "file": "specimen_314831019_intervention_pair_12570.npz", + "sample_ids": [ + "specimen_314831019:intervention:temporal_jitter@1:12570:0000:seed105127970", + "specimen_314831019:intervention:temporal_jitter@1:12570:0001:seed374326635" + ] + }, + { + "count": 2, + "file": "specimen_314831019_intervention_pair_12571.npz", + "sample_ids": [ + "specimen_314831019:intervention:temporal_jitter@1:12571:0000:seed1348672363", + "specimen_314831019:intervention:temporal_jitter@1:12571:0001:seed1533971561" + ] + }, + { + "count": 2, + "file": "specimen_314831019_intervention_pair_12572.npz", + "sample_ids": [ + "specimen_314831019:intervention:temporal_jitter@1:12572:0000:seed1735629181", + "specimen_314831019:intervention:temporal_jitter@1:12572:0001:seed1330182555" + ] + }, + { + "count": 2, + "file": "specimen_314831019_intervention_pair_12573.npz", + "sample_ids": [ + "specimen_314831019:intervention:temporal_jitter@1:12573:0000:seed1423970550", + "specimen_314831019:intervention:temporal_jitter@1:12573:0001:seed1807100575" + ] + }, + { + "count": 2, + "file": "specimen_314831019_intervention_pair_12574.npz", + "sample_ids": [ + "specimen_314831019:intervention:temporal_jitter@1:12574:0000:seed2094313317", + "specimen_314831019:intervention:temporal_jitter@1:12574:0001:seed1976383501" + ] + }, + { + "count": 2, + "file": "specimen_314831019_intervention_pair_12575.npz", + "sample_ids": [ + "specimen_314831019:intervention:temporal_jitter@1:12575:0000:seed1812747837", + "specimen_314831019:intervention:temporal_jitter@1:12575:0001:seed1090843812" + ] + }, + { + "count": 2, + "file": "specimen_314831019_intervention_pair_12576.npz", + "sample_ids": [ + "specimen_314831019:intervention:temporal_jitter@1:12576:0000:seed1109899800", + "specimen_314831019:intervention:temporal_jitter@1:12576:0001:seed1199751815" + ] + }, + { + "count": 2, + "file": "specimen_314831019_intervention_pair_12577.npz", + "sample_ids": [ + "specimen_314831019:intervention:temporal_jitter@1:12577:0000:seed716218279", + "specimen_314831019:intervention:temporal_jitter@1:12577:0001:seed1427904916" + ] + }, + { + "count": 2, + "file": "specimen_314831019_intervention_pair_12578.npz", + "sample_ids": [ + "specimen_314831019:intervention:temporal_jitter@1:12578:0000:seed1823116109", + "specimen_314831019:intervention:temporal_jitter@1:12578:0001:seed1553448726" + ] + }, + { + "count": 2, + "file": "specimen_314831019_intervention_pair_12579.npz", + "sample_ids": [ + "specimen_314831019:intervention:temporal_jitter@1:12579:0000:seed1228803383", + "specimen_314831019:intervention:temporal_jitter@1:12579:0001:seed185868898" + ] + }, + { + "count": 2, + "file": "specimen_314831019_intervention_pair_12580.npz", + "sample_ids": [ + "specimen_314831019:intervention:temporal_jitter@1:12580:0000:seed1075530087", + "specimen_314831019:intervention:temporal_jitter@1:12580:0001:seed1119089133" + ] + }, + { + "count": 2, + "file": "specimen_354190013_intervention_pair_10645.npz", + "sample_ids": [ + "specimen_354190013:intervention:temporal_jitter@1:10645:0000:seed728780349", + "specimen_354190013:intervention:temporal_jitter@1:10645:0001:seed135735677" + ] + }, + { + "count": 2, + "file": "specimen_354190013_intervention_pair_10646.npz", + "sample_ids": [ + "specimen_354190013:intervention:temporal_jitter@1:10646:0000:seed835541341", + "specimen_354190013:intervention:temporal_jitter@1:10646:0001:seed381125686" + ] + }, + { + "count": 2, + "file": "specimen_354190013_intervention_pair_10647.npz", + "sample_ids": [ + "specimen_354190013:intervention:temporal_jitter@1:10647:0000:seed176870140", + "specimen_354190013:intervention:temporal_jitter@1:10647:0001:seed330575741" + ] + }, + { + "count": 2, + "file": "specimen_354190013_intervention_pair_10648.npz", + "sample_ids": [ + "specimen_354190013:intervention:temporal_jitter@1:10648:0000:seed1802152392", + "specimen_354190013:intervention:temporal_jitter@1:10648:0001:seed247254780" + ] + }, + { + "count": 2, + "file": "specimen_354190013_intervention_pair_10649.npz", + "sample_ids": [ + "specimen_354190013:intervention:temporal_jitter@1:10649:0000:seed461003751", + "specimen_354190013:intervention:temporal_jitter@1:10649:0001:seed1120341947" + ] + }, + { + "count": 2, + "file": "specimen_354190013_intervention_pair_10650.npz", + "sample_ids": [ + "specimen_354190013:intervention:temporal_jitter@1:10650:0000:seed1146159731", + "specimen_354190013:intervention:temporal_jitter@1:10650:0001:seed1526304059" + ] + }, + { + "count": 2, + "file": "specimen_354190013_intervention_pair_10651.npz", + "sample_ids": [ + "specimen_354190013:intervention:temporal_jitter@1:10651:0000:seed81326403", + "specimen_354190013:intervention:temporal_jitter@1:10651:0001:seed239117412" + ] + }, + { + "count": 2, + "file": "specimen_354190013_intervention_pair_10652.npz", + "sample_ids": [ + "specimen_354190013:intervention:temporal_jitter@1:10652:0000:seed1816217679", + "specimen_354190013:intervention:temporal_jitter@1:10652:0001:seed241060034" + ] + }, + { + "count": 2, + "file": "specimen_354190013_intervention_pair_10653.npz", + "sample_ids": [ + "specimen_354190013:intervention:temporal_jitter@1:10653:0000:seed1439881628", + "specimen_354190013:intervention:temporal_jitter@1:10653:0001:seed102934083" + ] + }, + { + "count": 2, + "file": "specimen_354190013_intervention_pair_10654.npz", + "sample_ids": [ + "specimen_354190013:intervention:temporal_jitter@1:10654:0000:seed841166917", + "specimen_354190013:intervention:temporal_jitter@1:10654:0001:seed1827010091" + ] + }, + { + "count": 2, + "file": "specimen_354190013_intervention_pair_10655.npz", + "sample_ids": [ + "specimen_354190013:intervention:temporal_jitter@1:10655:0000:seed1571725920", + "specimen_354190013:intervention:temporal_jitter@1:10655:0001:seed781828587" + ] + }, + { + "count": 2, + "file": "specimen_354190013_intervention_pair_10656.npz", + "sample_ids": [ + "specimen_354190013:intervention:temporal_jitter@1:10656:0000:seed686848703", + "specimen_354190013:intervention:temporal_jitter@1:10656:0001:seed1480271232" + ] + }, + { + "count": 2, + "file": "specimen_354190013_intervention_pair_10657.npz", + "sample_ids": [ + "specimen_354190013:intervention:temporal_jitter@1:10657:0000:seed2011278604", + "specimen_354190013:intervention:temporal_jitter@1:10657:0001:seed2028703790" + ] + }, + { + "count": 2, + "file": "specimen_354190013_intervention_pair_10658.npz", + "sample_ids": [ + "specimen_354190013:intervention:temporal_jitter@1:10658:0000:seed1495760738", + "specimen_354190013:intervention:temporal_jitter@1:10658:0001:seed1701251556" + ] + }, + { + "count": 2, + "file": "specimen_354190013_intervention_pair_10659.npz", + "sample_ids": [ + "specimen_354190013:intervention:temporal_jitter@1:10659:0000:seed510211663", + "specimen_354190013:intervention:temporal_jitter@1:10659:0001:seed627836009" + ] + }, + { + "count": 2, + "file": "specimen_354190013_intervention_pair_10660.npz", + "sample_ids": [ + "specimen_354190013:intervention:temporal_jitter@1:10660:0000:seed962454361", + "specimen_354190013:intervention:temporal_jitter@1:10660:0001:seed646474258" + ] + }, + { + "count": 2, + "file": "specimen_354190013_intervention_pair_10661.npz", + "sample_ids": [ + "specimen_354190013:intervention:temporal_jitter@1:10661:0000:seed787630463", + "specimen_354190013:intervention:temporal_jitter@1:10661:0001:seed1978615220" + ] + }, + { + "count": 2, + "file": "specimen_354190013_intervention_pair_10662.npz", + "sample_ids": [ + "specimen_354190013:intervention:temporal_jitter@1:10662:0000:seed1553666241", + "specimen_354190013:intervention:temporal_jitter@1:10662:0001:seed1296088386" + ] + }, + { + "count": 2, + "file": "specimen_354190013_intervention_pair_10663.npz", + "sample_ids": [ + "specimen_354190013:intervention:temporal_jitter@1:10663:0000:seed1208825936", + "specimen_354190013:intervention:temporal_jitter@1:10663:0001:seed948688254" + ] + }, + { + "count": 2, + "file": "specimen_354190013_intervention_pair_10664.npz", + "sample_ids": [ + "specimen_354190013:intervention:temporal_jitter@1:10664:0000:seed408747292", + "specimen_354190013:intervention:temporal_jitter@1:10664:0001:seed161948097" + ] + }, + { + "count": 2, + "file": "specimen_468120757_intervention_pair_11603.npz", + "sample_ids": [ + "specimen_468120757:intervention:temporal_jitter@1:11603:0000:seed1641074235", + "specimen_468120757:intervention:temporal_jitter@1:11603:0001:seed525370628" + ] + }, + { + "count": 2, + "file": "specimen_468120757_intervention_pair_11604.npz", + "sample_ids": [ + "specimen_468120757:intervention:temporal_jitter@1:11604:0000:seed58035592", + "specimen_468120757:intervention:temporal_jitter@1:11604:0001:seed760404393" + ] + }, + { + "count": 2, + "file": "specimen_468120757_intervention_pair_11605.npz", + "sample_ids": [ + "specimen_468120757:intervention:temporal_jitter@1:11605:0000:seed897799892", + "specimen_468120757:intervention:temporal_jitter@1:11605:0001:seed551122716" + ] + }, + { + "count": 2, + "file": "specimen_468120757_intervention_pair_11606.npz", + "sample_ids": [ + "specimen_468120757:intervention:temporal_jitter@1:11606:0000:seed1775224877", + "specimen_468120757:intervention:temporal_jitter@1:11606:0001:seed1099771935" + ] + }, + { + "count": 2, + "file": "specimen_468120757_intervention_pair_11607.npz", + "sample_ids": [ + "specimen_468120757:intervention:temporal_jitter@1:11607:0000:seed749796966", + "specimen_468120757:intervention:temporal_jitter@1:11607:0001:seed1199002140" + ] + }, + { + "count": 2, + "file": "specimen_468120757_intervention_pair_11608.npz", + "sample_ids": [ + "specimen_468120757:intervention:temporal_jitter@1:11608:0000:seed1968032281", + "specimen_468120757:intervention:temporal_jitter@1:11608:0001:seed1462149139" + ] + }, + { + "count": 2, + "file": "specimen_468120757_intervention_pair_11609.npz", + "sample_ids": [ + "specimen_468120757:intervention:temporal_jitter@1:11609:0000:seed679119527", + "specimen_468120757:intervention:temporal_jitter@1:11609:0001:seed665729654" + ] + }, + { + "count": 2, + "file": "specimen_468120757_intervention_pair_11610.npz", + "sample_ids": [ + "specimen_468120757:intervention:temporal_jitter@1:11610:0000:seed1466547329", + "specimen_468120757:intervention:temporal_jitter@1:11610:0001:seed1427441094" + ] + }, + { + "count": 2, + "file": "specimen_468120757_intervention_pair_11611.npz", + "sample_ids": [ + "specimen_468120757:intervention:temporal_jitter@1:11611:0000:seed1374019645", + "specimen_468120757:intervention:temporal_jitter@1:11611:0001:seed1054285868" + ] + }, + { + "count": 2, + "file": "specimen_468120757_intervention_pair_11612.npz", + "sample_ids": [ + "specimen_468120757:intervention:temporal_jitter@1:11612:0000:seed1555605857", + "specimen_468120757:intervention:temporal_jitter@1:11612:0001:seed679238271" + ] + }, + { + "count": 2, + "file": "specimen_468120757_intervention_pair_11613.npz", + "sample_ids": [ + "specimen_468120757:intervention:temporal_jitter@1:11613:0000:seed387415348", + "specimen_468120757:intervention:temporal_jitter@1:11613:0001:seed874839322" + ] + }, + { + "count": 2, + "file": "specimen_468120757_intervention_pair_11614.npz", + "sample_ids": [ + "specimen_468120757:intervention:temporal_jitter@1:11614:0000:seed2130465549", + "specimen_468120757:intervention:temporal_jitter@1:11614:0001:seed1153477382" + ] + }, + { + "count": 2, + "file": "specimen_468120757_intervention_pair_11615.npz", + "sample_ids": [ + "specimen_468120757:intervention:temporal_jitter@1:11615:0000:seed1970658700", + "specimen_468120757:intervention:temporal_jitter@1:11615:0001:seed1114274703" + ] + }, + { + "count": 2, + "file": "specimen_468120757_intervention_pair_11616.npz", + "sample_ids": [ + "specimen_468120757:intervention:temporal_jitter@1:11616:0000:seed994506046", + "specimen_468120757:intervention:temporal_jitter@1:11616:0001:seed822432403" + ] + }, + { + "count": 2, + "file": "specimen_468120757_intervention_pair_11617.npz", + "sample_ids": [ + "specimen_468120757:intervention:temporal_jitter@1:11617:0000:seed2093721607", + "specimen_468120757:intervention:temporal_jitter@1:11617:0001:seed233147476" + ] + }, + { + "count": 2, + "file": "specimen_468120757_intervention_pair_11618.npz", + "sample_ids": [ + "specimen_468120757:intervention:temporal_jitter@1:11618:0000:seed998561642", + "specimen_468120757:intervention:temporal_jitter@1:11618:0001:seed1729953781" + ] + }, + { + "count": 2, + "file": "specimen_468120757_intervention_pair_11619.npz", + "sample_ids": [ + "specimen_468120757:intervention:temporal_jitter@1:11619:0000:seed464949226", + "specimen_468120757:intervention:temporal_jitter@1:11619:0001:seed470431621" + ] + }, + { + "count": 2, + "file": "specimen_468120757_intervention_pair_11620.npz", + "sample_ids": [ + "specimen_468120757:intervention:temporal_jitter@1:11620:0000:seed1794611835", + "specimen_468120757:intervention:temporal_jitter@1:11620:0001:seed2137931633" + ] + }, + { + "count": 2, + "file": "specimen_468120757_intervention_pair_11621.npz", + "sample_ids": [ + "specimen_468120757:intervention:temporal_jitter@1:11621:0000:seed1202801987", + "specimen_468120757:intervention:temporal_jitter@1:11621:0001:seed1355783579" + ] + }, + { + "count": 2, + "file": "specimen_468120757_intervention_pair_11622.npz", + "sample_ids": [ + "specimen_468120757:intervention:temporal_jitter@1:11622:0000:seed951555416", + "specimen_468120757:intervention:temporal_jitter@1:11622:0001:seed807545111" + ] + }, + { + "count": 2, + "file": "specimen_471129934_intervention_pair_01796.npz", + "sample_ids": [ + "specimen_471129934:intervention:temporal_jitter@1:01796:0000:seed519353258", + "specimen_471129934:intervention:temporal_jitter@1:01796:0001:seed758847043" + ] + }, + { + "count": 2, + "file": "specimen_471129934_intervention_pair_01797.npz", + "sample_ids": [ + "specimen_471129934:intervention:temporal_jitter@1:01797:0000:seed124761032", + "specimen_471129934:intervention:temporal_jitter@1:01797:0001:seed838921506" + ] + }, + { + "count": 2, + "file": "specimen_471129934_intervention_pair_01798.npz", + "sample_ids": [ + "specimen_471129934:intervention:temporal_jitter@1:01798:0000:seed273046020", + "specimen_471129934:intervention:temporal_jitter@1:01798:0001:seed1155026550" + ] + }, + { + "count": 2, + "file": "specimen_471129934_intervention_pair_01799.npz", + "sample_ids": [ + "specimen_471129934:intervention:temporal_jitter@1:01799:0000:seed1009228072", + "specimen_471129934:intervention:temporal_jitter@1:01799:0001:seed1281320425" + ] + }, + { + "count": 2, + "file": "specimen_471129934_intervention_pair_01800.npz", + "sample_ids": [ + "specimen_471129934:intervention:temporal_jitter@1:01800:0000:seed1232405423", + "specimen_471129934:intervention:temporal_jitter@1:01800:0001:seed585267656" + ] + }, + { + "count": 2, + "file": "specimen_471129934_intervention_pair_01801.npz", + "sample_ids": [ + "specimen_471129934:intervention:temporal_jitter@1:01801:0000:seed771340799", + "specimen_471129934:intervention:temporal_jitter@1:01801:0001:seed1594819274" + ] + }, + { + "count": 2, + "file": "specimen_471129934_intervention_pair_01802.npz", + "sample_ids": [ + "specimen_471129934:intervention:temporal_jitter@1:01802:0000:seed257462119", + "specimen_471129934:intervention:temporal_jitter@1:01802:0001:seed541086965" + ] + }, + { + "count": 2, + "file": "specimen_471129934_intervention_pair_01803.npz", + "sample_ids": [ + "specimen_471129934:intervention:temporal_jitter@1:01803:0000:seed955278304", + "specimen_471129934:intervention:temporal_jitter@1:01803:0001:seed188410661" + ] + }, + { + "count": 2, + "file": "specimen_471129934_intervention_pair_01804.npz", + "sample_ids": [ + "specimen_471129934:intervention:temporal_jitter@1:01804:0000:seed949286179", + "specimen_471129934:intervention:temporal_jitter@1:01804:0001:seed950676510" + ] + }, + { + "count": 2, + "file": "specimen_471129934_intervention_pair_01805.npz", + "sample_ids": [ + "specimen_471129934:intervention:temporal_jitter@1:01805:0000:seed883642024", + "specimen_471129934:intervention:temporal_jitter@1:01805:0001:seed414515312" + ] + }, + { + "count": 2, + "file": "specimen_471129934_intervention_pair_01806.npz", + "sample_ids": [ + "specimen_471129934:intervention:temporal_jitter@1:01806:0000:seed304307722", + "specimen_471129934:intervention:temporal_jitter@1:01806:0001:seed201214994" + ] + }, + { + "count": 2, + "file": "specimen_471129934_intervention_pair_01807.npz", + "sample_ids": [ + "specimen_471129934:intervention:temporal_jitter@1:01807:0000:seed1852437963", + "specimen_471129934:intervention:temporal_jitter@1:01807:0001:seed1274070106" + ] + }, + { + "count": 2, + "file": "specimen_471129934_intervention_pair_01808.npz", + "sample_ids": [ + "specimen_471129934:intervention:temporal_jitter@1:01808:0000:seed2038424376", + "specimen_471129934:intervention:temporal_jitter@1:01808:0001:seed844824242" + ] + }, + { + "count": 2, + "file": "specimen_471129934_intervention_pair_01809.npz", + "sample_ids": [ + "specimen_471129934:intervention:temporal_jitter@1:01809:0000:seed1989157871", + "specimen_471129934:intervention:temporal_jitter@1:01809:0001:seed1282770287" + ] + }, + { + "count": 2, + "file": "specimen_471129934_intervention_pair_01810.npz", + "sample_ids": [ + "specimen_471129934:intervention:temporal_jitter@1:01810:0000:seed1173729726", + "specimen_471129934:intervention:temporal_jitter@1:01810:0001:seed1449875894" + ] + }, + { + "count": 2, + "file": "specimen_471129934_intervention_pair_01811.npz", + "sample_ids": [ + "specimen_471129934:intervention:temporal_jitter@1:01811:0000:seed1055657445", + "specimen_471129934:intervention:temporal_jitter@1:01811:0001:seed1039440753" + ] + }, + { + "count": 2, + "file": "specimen_471129934_intervention_pair_01812.npz", + "sample_ids": [ + "specimen_471129934:intervention:temporal_jitter@1:01812:0000:seed2007355319", + "specimen_471129934:intervention:temporal_jitter@1:01812:0001:seed1537732086" + ] + }, + { + "count": 2, + "file": "specimen_471129934_intervention_pair_01813.npz", + "sample_ids": [ + "specimen_471129934:intervention:temporal_jitter@1:01813:0000:seed852462091", + "specimen_471129934:intervention:temporal_jitter@1:01813:0001:seed1205748042" + ] + }, + { + "count": 2, + "file": "specimen_471129934_intervention_pair_01814.npz", + "sample_ids": [ + "specimen_471129934:intervention:temporal_jitter@1:01814:0000:seed1987327689", + "specimen_471129934:intervention:temporal_jitter@1:01814:0001:seed756753841" + ] + }, + { + "count": 2, + "file": "specimen_471129934_intervention_pair_01815.npz", + "sample_ids": [ + "specimen_471129934:intervention:temporal_jitter@1:01815:0000:seed686010009", + "specimen_471129934:intervention:temporal_jitter@1:01815:0001:seed1384291263" + ] + }, + { + "count": 2, + "file": "specimen_473601979_intervention_pair_05065.npz", + "sample_ids": [ + "specimen_473601979:intervention:temporal_jitter@1:05065:0000:seed1778694155", + "specimen_473601979:intervention:temporal_jitter@1:05065:0001:seed1357024719" + ] + }, + { + "count": 2, + "file": "specimen_473601979_intervention_pair_05066.npz", + "sample_ids": [ + "specimen_473601979:intervention:temporal_jitter@1:05066:0000:seed1951714320", + "specimen_473601979:intervention:temporal_jitter@1:05066:0001:seed1729413237" + ] + }, + { + "count": 2, + "file": "specimen_473601979_intervention_pair_05067.npz", + "sample_ids": [ + "specimen_473601979:intervention:temporal_jitter@1:05067:0000:seed1743000190", + "specimen_473601979:intervention:temporal_jitter@1:05067:0001:seed1572331325" + ] + }, + { + "count": 2, + "file": "specimen_473601979_intervention_pair_05068.npz", + "sample_ids": [ + "specimen_473601979:intervention:temporal_jitter@1:05068:0000:seed600135957", + "specimen_473601979:intervention:temporal_jitter@1:05068:0001:seed1584624818" + ] + }, + { + "count": 2, + "file": "specimen_473601979_intervention_pair_05069.npz", + "sample_ids": [ + "specimen_473601979:intervention:temporal_jitter@1:05069:0000:seed1356273459", + "specimen_473601979:intervention:temporal_jitter@1:05069:0001:seed673303250" + ] + }, + { + "count": 2, + "file": "specimen_473601979_intervention_pair_05070.npz", + "sample_ids": [ + "specimen_473601979:intervention:temporal_jitter@1:05070:0000:seed1780710765", + "specimen_473601979:intervention:temporal_jitter@1:05070:0001:seed1843626101" + ] + }, + { + "count": 2, + "file": "specimen_473601979_intervention_pair_05071.npz", + "sample_ids": [ + "specimen_473601979:intervention:temporal_jitter@1:05071:0000:seed1416844145", + "specimen_473601979:intervention:temporal_jitter@1:05071:0001:seed170430103" + ] + }, + { + "count": 2, + "file": "specimen_473601979_intervention_pair_05072.npz", + "sample_ids": [ + "specimen_473601979:intervention:temporal_jitter@1:05072:0000:seed931157494", + "specimen_473601979:intervention:temporal_jitter@1:05072:0001:seed1654910189" + ] + }, + { + "count": 2, + "file": "specimen_473601979_intervention_pair_05073.npz", + "sample_ids": [ + "specimen_473601979:intervention:temporal_jitter@1:05073:0000:seed1467643174", + "specimen_473601979:intervention:temporal_jitter@1:05073:0001:seed1333594709" + ] + }, + { + "count": 2, + "file": "specimen_473601979_intervention_pair_05074.npz", + "sample_ids": [ + "specimen_473601979:intervention:temporal_jitter@1:05074:0000:seed1225197703", + "specimen_473601979:intervention:temporal_jitter@1:05074:0001:seed1765940666" + ] + }, + { + "count": 2, + "file": "specimen_473601979_intervention_pair_05075.npz", + "sample_ids": [ + "specimen_473601979:intervention:temporal_jitter@1:05075:0000:seed1532996613", + "specimen_473601979:intervention:temporal_jitter@1:05075:0001:seed112152754" + ] + }, + { + "count": 2, + "file": "specimen_473601979_intervention_pair_05076.npz", + "sample_ids": [ + "specimen_473601979:intervention:temporal_jitter@1:05076:0000:seed155296755", + "specimen_473601979:intervention:temporal_jitter@1:05076:0001:seed424849332" + ] + }, + { + "count": 2, + "file": "specimen_473601979_intervention_pair_05077.npz", + "sample_ids": [ + "specimen_473601979:intervention:temporal_jitter@1:05077:0000:seed175330686", + "specimen_473601979:intervention:temporal_jitter@1:05077:0001:seed1342101594" + ] + }, + { + "count": 2, + "file": "specimen_473601979_intervention_pair_05078.npz", + "sample_ids": [ + "specimen_473601979:intervention:temporal_jitter@1:05078:0000:seed1636869282", + "specimen_473601979:intervention:temporal_jitter@1:05078:0001:seed1918802444" + ] + }, + { + "count": 2, + "file": "specimen_473601979_intervention_pair_05079.npz", + "sample_ids": [ + "specimen_473601979:intervention:temporal_jitter@1:05079:0000:seed107068998", + "specimen_473601979:intervention:temporal_jitter@1:05079:0001:seed332179457" + ] + }, + { + "count": 2, + "file": "specimen_473601979_intervention_pair_05080.npz", + "sample_ids": [ + "specimen_473601979:intervention:temporal_jitter@1:05080:0000:seed1491919688", + "specimen_473601979:intervention:temporal_jitter@1:05080:0001:seed350740734" + ] + }, + { + "count": 2, + "file": "specimen_473601979_intervention_pair_05081.npz", + "sample_ids": [ + "specimen_473601979:intervention:temporal_jitter@1:05081:0000:seed1990814954", + "specimen_473601979:intervention:temporal_jitter@1:05081:0001:seed259489248" + ] + }, + { + "count": 2, + "file": "specimen_473601979_intervention_pair_05082.npz", + "sample_ids": [ + "specimen_473601979:intervention:temporal_jitter@1:05082:0000:seed1642398651", + "specimen_473601979:intervention:temporal_jitter@1:05082:0001:seed1400708824" + ] + }, + { + "count": 2, + "file": "specimen_473601979_intervention_pair_05083.npz", + "sample_ids": [ + "specimen_473601979:intervention:temporal_jitter@1:05083:0000:seed125067424", + "specimen_473601979:intervention:temporal_jitter@1:05083:0001:seed1811716645" + ] + }, + { + "count": 2, + "file": "specimen_473601979_intervention_pair_05084.npz", + "sample_ids": [ + "specimen_473601979:intervention:temporal_jitter@1:05084:0000:seed982006304", + "specimen_473601979:intervention:temporal_jitter@1:05084:0001:seed1288558590" + ] + }, + { + "count": 2, + "file": "specimen_476048909_intervention_pair_06981.npz", + "sample_ids": [ + "specimen_476048909:intervention:temporal_jitter@1:06981:0000:seed1221789671", + "specimen_476048909:intervention:temporal_jitter@1:06981:0001:seed750684202" + ] + }, + { + "count": 2, + "file": "specimen_476048909_intervention_pair_06982.npz", + "sample_ids": [ + "specimen_476048909:intervention:temporal_jitter@1:06982:0000:seed1421784985", + "specimen_476048909:intervention:temporal_jitter@1:06982:0001:seed1647839611" + ] + }, + { + "count": 2, + "file": "specimen_476048909_intervention_pair_06983.npz", + "sample_ids": [ + "specimen_476048909:intervention:temporal_jitter@1:06983:0000:seed1563006725", + "specimen_476048909:intervention:temporal_jitter@1:06983:0001:seed1784277981" + ] + }, + { + "count": 2, + "file": "specimen_476048909_intervention_pair_06984.npz", + "sample_ids": [ + "specimen_476048909:intervention:temporal_jitter@1:06984:0000:seed1400245951", + "specimen_476048909:intervention:temporal_jitter@1:06984:0001:seed773324133" + ] + }, + { + "count": 2, + "file": "specimen_476048909_intervention_pair_06985.npz", + "sample_ids": [ + "specimen_476048909:intervention:temporal_jitter@1:06985:0000:seed1783720322", + "specimen_476048909:intervention:temporal_jitter@1:06985:0001:seed482604505" + ] + }, + { + "count": 2, + "file": "specimen_476048909_intervention_pair_06986.npz", + "sample_ids": [ + "specimen_476048909:intervention:temporal_jitter@1:06986:0000:seed52117890", + "specimen_476048909:intervention:temporal_jitter@1:06986:0001:seed2010387975" + ] + }, + { + "count": 2, + "file": "specimen_476048909_intervention_pair_06987.npz", + "sample_ids": [ + "specimen_476048909:intervention:temporal_jitter@1:06987:0000:seed1881764106", + "specimen_476048909:intervention:temporal_jitter@1:06987:0001:seed484964250" + ] + }, + { + "count": 2, + "file": "specimen_476048909_intervention_pair_06988.npz", + "sample_ids": [ + "specimen_476048909:intervention:temporal_jitter@1:06988:0000:seed2047373899", + "specimen_476048909:intervention:temporal_jitter@1:06988:0001:seed462900022" + ] + }, + { + "count": 2, + "file": "specimen_476048909_intervention_pair_06989.npz", + "sample_ids": [ + "specimen_476048909:intervention:temporal_jitter@1:06989:0000:seed843591518", + "specimen_476048909:intervention:temporal_jitter@1:06989:0001:seed1364353072" + ] + }, + { + "count": 2, + "file": "specimen_476048909_intervention_pair_06990.npz", + "sample_ids": [ + "specimen_476048909:intervention:temporal_jitter@1:06990:0000:seed136639308", + "specimen_476048909:intervention:temporal_jitter@1:06990:0001:seed1413234292" + ] + }, + { + "count": 2, + "file": "specimen_476048909_intervention_pair_06991.npz", + "sample_ids": [ + "specimen_476048909:intervention:temporal_jitter@1:06991:0000:seed1524192349", + "specimen_476048909:intervention:temporal_jitter@1:06991:0001:seed298051570" + ] + }, + { + "count": 2, + "file": "specimen_476048909_intervention_pair_06992.npz", + "sample_ids": [ + "specimen_476048909:intervention:temporal_jitter@1:06992:0000:seed1107526437", + "specimen_476048909:intervention:temporal_jitter@1:06992:0001:seed1566660308" + ] + }, + { + "count": 2, + "file": "specimen_476048909_intervention_pair_06993.npz", + "sample_ids": [ + "specimen_476048909:intervention:temporal_jitter@1:06993:0000:seed1343608991", + "specimen_476048909:intervention:temporal_jitter@1:06993:0001:seed1341309862" + ] + }, + { + "count": 2, + "file": "specimen_476048909_intervention_pair_06994.npz", + "sample_ids": [ + "specimen_476048909:intervention:temporal_jitter@1:06994:0000:seed940866717", + "specimen_476048909:intervention:temporal_jitter@1:06994:0001:seed327506991" + ] + }, + { + "count": 2, + "file": "specimen_476048909_intervention_pair_06995.npz", + "sample_ids": [ + "specimen_476048909:intervention:temporal_jitter@1:06995:0000:seed1135202470", + "specimen_476048909:intervention:temporal_jitter@1:06995:0001:seed1880269847" + ] + }, + { + "count": 2, + "file": "specimen_476048909_intervention_pair_06996.npz", + "sample_ids": [ + "specimen_476048909:intervention:temporal_jitter@1:06996:0000:seed1799319979", + "specimen_476048909:intervention:temporal_jitter@1:06996:0001:seed1912448998" + ] + }, + { + "count": 2, + "file": "specimen_476048909_intervention_pair_06997.npz", + "sample_ids": [ + "specimen_476048909:intervention:temporal_jitter@1:06997:0000:seed606995635", + "specimen_476048909:intervention:temporal_jitter@1:06997:0001:seed1629738219" + ] + }, + { + "count": 2, + "file": "specimen_476048909_intervention_pair_06998.npz", + "sample_ids": [ + "specimen_476048909:intervention:temporal_jitter@1:06998:0000:seed1227547855", + "specimen_476048909:intervention:temporal_jitter@1:06998:0001:seed997273214" + ] + }, + { + "count": 2, + "file": "specimen_476048909_intervention_pair_06999.npz", + "sample_ids": [ + "specimen_476048909:intervention:temporal_jitter@1:06999:0000:seed584425689", + "specimen_476048909:intervention:temporal_jitter@1:06999:0001:seed1037245078" + ] + }, + { + "count": 2, + "file": "specimen_476048909_intervention_pair_07000.npz", + "sample_ids": [ + "specimen_476048909:intervention:temporal_jitter@1:07000:0000:seed392017331", + "specimen_476048909:intervention:temporal_jitter@1:07000:0001:seed1709494066" + ] + }, + { + "count": 2, + "file": "specimen_478586295_intervention_pair_09855.npz", + "sample_ids": [ + "specimen_478586295:intervention:temporal_jitter@1:09855:0000:seed1522765471", + "specimen_478586295:intervention:temporal_jitter@1:09855:0001:seed1000913289" + ] + }, + { + "count": 2, + "file": "specimen_478586295_intervention_pair_09856.npz", + "sample_ids": [ + "specimen_478586295:intervention:temporal_jitter@1:09856:0000:seed2101230834", + "specimen_478586295:intervention:temporal_jitter@1:09856:0001:seed1503173075" + ] + }, + { + "count": 2, + "file": "specimen_478586295_intervention_pair_09857.npz", + "sample_ids": [ + "specimen_478586295:intervention:temporal_jitter@1:09857:0000:seed1412844986", + "specimen_478586295:intervention:temporal_jitter@1:09857:0001:seed2044357460" + ] + }, + { + "count": 2, + "file": "specimen_478586295_intervention_pair_09858.npz", + "sample_ids": [ + "specimen_478586295:intervention:temporal_jitter@1:09858:0000:seed2088399537", + "specimen_478586295:intervention:temporal_jitter@1:09858:0001:seed773775624" + ] + }, + { + "count": 2, + "file": "specimen_478586295_intervention_pair_09859.npz", + "sample_ids": [ + "specimen_478586295:intervention:temporal_jitter@1:09859:0000:seed536024221", + "specimen_478586295:intervention:temporal_jitter@1:09859:0001:seed284054994" + ] + }, + { + "count": 2, + "file": "specimen_478586295_intervention_pair_09860.npz", + "sample_ids": [ + "specimen_478586295:intervention:temporal_jitter@1:09860:0000:seed954835229", + "specimen_478586295:intervention:temporal_jitter@1:09860:0001:seed958543578" + ] + }, + { + "count": 2, + "file": "specimen_478586295_intervention_pair_09861.npz", + "sample_ids": [ + "specimen_478586295:intervention:temporal_jitter@1:09861:0000:seed1052352336", + "specimen_478586295:intervention:temporal_jitter@1:09861:0001:seed1840739904" + ] + }, + { + "count": 2, + "file": "specimen_478586295_intervention_pair_09862.npz", + "sample_ids": [ + "specimen_478586295:intervention:temporal_jitter@1:09862:0000:seed1083322280", + "specimen_478586295:intervention:temporal_jitter@1:09862:0001:seed1240272126" + ] + }, + { + "count": 2, + "file": "specimen_478586295_intervention_pair_09863.npz", + "sample_ids": [ + "specimen_478586295:intervention:temporal_jitter@1:09863:0000:seed1539353444", + "specimen_478586295:intervention:temporal_jitter@1:09863:0001:seed1327030061" + ] + }, + { + "count": 2, + "file": "specimen_478586295_intervention_pair_09864.npz", + "sample_ids": [ + "specimen_478586295:intervention:temporal_jitter@1:09864:0000:seed2128223628", + "specimen_478586295:intervention:temporal_jitter@1:09864:0001:seed970019757" + ] + }, + { + "count": 2, + "file": "specimen_478586295_intervention_pair_09865.npz", + "sample_ids": [ + "specimen_478586295:intervention:temporal_jitter@1:09865:0000:seed1569456989", + "specimen_478586295:intervention:temporal_jitter@1:09865:0001:seed825968179" + ] + }, + { + "count": 2, + "file": "specimen_478586295_intervention_pair_09866.npz", + "sample_ids": [ + "specimen_478586295:intervention:temporal_jitter@1:09866:0000:seed841303332", + "specimen_478586295:intervention:temporal_jitter@1:09866:0001:seed1688648589" + ] + }, + { + "count": 2, + "file": "specimen_478586295_intervention_pair_09867.npz", + "sample_ids": [ + "specimen_478586295:intervention:temporal_jitter@1:09867:0000:seed1005509455", + "specimen_478586295:intervention:temporal_jitter@1:09867:0001:seed1571547306" + ] + }, + { + "count": 2, + "file": "specimen_478586295_intervention_pair_09868.npz", + "sample_ids": [ + "specimen_478586295:intervention:temporal_jitter@1:09868:0000:seed1168298374", + "specimen_478586295:intervention:temporal_jitter@1:09868:0001:seed960561765" + ] + }, + { + "count": 2, + "file": "specimen_478586295_intervention_pair_09869.npz", + "sample_ids": [ + "specimen_478586295:intervention:temporal_jitter@1:09869:0000:seed1196337129", + "specimen_478586295:intervention:temporal_jitter@1:09869:0001:seed863093222" + ] + }, + { + "count": 2, + "file": "specimen_478586295_intervention_pair_09870.npz", + "sample_ids": [ + "specimen_478586295:intervention:temporal_jitter@1:09870:0000:seed489436326", + "specimen_478586295:intervention:temporal_jitter@1:09870:0001:seed628561166" + ] + }, + { + "count": 2, + "file": "specimen_478586295_intervention_pair_09871.npz", + "sample_ids": [ + "specimen_478586295:intervention:temporal_jitter@1:09871:0000:seed917443161", + "specimen_478586295:intervention:temporal_jitter@1:09871:0001:seed733499611" + ] + }, + { + "count": 2, + "file": "specimen_478586295_intervention_pair_09872.npz", + "sample_ids": [ + "specimen_478586295:intervention:temporal_jitter@1:09872:0000:seed406713447", + "specimen_478586295:intervention:temporal_jitter@1:09872:0001:seed737135747" + ] + }, + { + "count": 2, + "file": "specimen_478586295_intervention_pair_09873.npz", + "sample_ids": [ + "specimen_478586295:intervention:temporal_jitter@1:09873:0000:seed41785923", + "specimen_478586295:intervention:temporal_jitter@1:09873:0001:seed1560088161" + ] + }, + { + "count": 2, + "file": "specimen_478586295_intervention_pair_09874.npz", + "sample_ids": [ + "specimen_478586295:intervention:temporal_jitter@1:09874:0000:seed601054243", + "specimen_478586295:intervention:temporal_jitter@1:09874:0001:seed824095775" + ] + }, + { + "count": 2, + "file": "specimen_480169178_intervention_pair_06023.npz", + "sample_ids": [ + "specimen_480169178:intervention:temporal_jitter@1:06023:0000:seed15523385", + "specimen_480169178:intervention:temporal_jitter@1:06023:0001:seed1450192108" + ] + }, + { + "count": 2, + "file": "specimen_480169178_intervention_pair_06024.npz", + "sample_ids": [ + "specimen_480169178:intervention:temporal_jitter@1:06024:0000:seed92435306", + "specimen_480169178:intervention:temporal_jitter@1:06024:0001:seed580932408" + ] + }, + { + "count": 2, + "file": "specimen_480169178_intervention_pair_06025.npz", + "sample_ids": [ + "specimen_480169178:intervention:temporal_jitter@1:06025:0000:seed1645832684", + "specimen_480169178:intervention:temporal_jitter@1:06025:0001:seed8352873" + ] + }, + { + "count": 2, + "file": "specimen_480169178_intervention_pair_06026.npz", + "sample_ids": [ + "specimen_480169178:intervention:temporal_jitter@1:06026:0000:seed423010769", + "specimen_480169178:intervention:temporal_jitter@1:06026:0001:seed1872943398" + ] + }, + { + "count": 2, + "file": "specimen_480169178_intervention_pair_06027.npz", + "sample_ids": [ + "specimen_480169178:intervention:temporal_jitter@1:06027:0000:seed592833793", + "specimen_480169178:intervention:temporal_jitter@1:06027:0001:seed654742570" + ] + }, + { + "count": 2, + "file": "specimen_480169178_intervention_pair_06028.npz", + "sample_ids": [ + "specimen_480169178:intervention:temporal_jitter@1:06028:0000:seed1571689270", + "specimen_480169178:intervention:temporal_jitter@1:06028:0001:seed1493982425" + ] + }, + { + "count": 2, + "file": "specimen_480169178_intervention_pair_06029.npz", + "sample_ids": [ + "specimen_480169178:intervention:temporal_jitter@1:06029:0000:seed1338323034", + "specimen_480169178:intervention:temporal_jitter@1:06029:0001:seed1408338627" + ] + }, + { + "count": 2, + "file": "specimen_480169178_intervention_pair_06030.npz", + "sample_ids": [ + "specimen_480169178:intervention:temporal_jitter@1:06030:0000:seed985182996", + "specimen_480169178:intervention:temporal_jitter@1:06030:0001:seed1029736028" + ] + }, + { + "count": 2, + "file": "specimen_480169178_intervention_pair_06031.npz", + "sample_ids": [ + "specimen_480169178:intervention:temporal_jitter@1:06031:0000:seed271965863", + "specimen_480169178:intervention:temporal_jitter@1:06031:0001:seed1682994096" + ] + }, + { + "count": 2, + "file": "specimen_480169178_intervention_pair_06032.npz", + "sample_ids": [ + "specimen_480169178:intervention:temporal_jitter@1:06032:0000:seed1965408955", + "specimen_480169178:intervention:temporal_jitter@1:06032:0001:seed1978575718" + ] + }, + { + "count": 2, + "file": "specimen_480169178_intervention_pair_06033.npz", + "sample_ids": [ + "specimen_480169178:intervention:temporal_jitter@1:06033:0000:seed163659325", + "specimen_480169178:intervention:temporal_jitter@1:06033:0001:seed1320837694" + ] + }, + { + "count": 2, + "file": "specimen_480169178_intervention_pair_06034.npz", + "sample_ids": [ + "specimen_480169178:intervention:temporal_jitter@1:06034:0000:seed291040157", + "specimen_480169178:intervention:temporal_jitter@1:06034:0001:seed647140451" + ] + }, + { + "count": 2, + "file": "specimen_480169178_intervention_pair_06035.npz", + "sample_ids": [ + "specimen_480169178:intervention:temporal_jitter@1:06035:0000:seed761845082", + "specimen_480169178:intervention:temporal_jitter@1:06035:0001:seed1130047611" + ] + }, + { + "count": 2, + "file": "specimen_480169178_intervention_pair_06036.npz", + "sample_ids": [ + "specimen_480169178:intervention:temporal_jitter@1:06036:0000:seed189217325", + "specimen_480169178:intervention:temporal_jitter@1:06036:0001:seed1139184511" + ] + }, + { + "count": 2, + "file": "specimen_480169178_intervention_pair_06037.npz", + "sample_ids": [ + "specimen_480169178:intervention:temporal_jitter@1:06037:0000:seed1620058553", + "specimen_480169178:intervention:temporal_jitter@1:06037:0001:seed472799329" + ] + }, + { + "count": 2, + "file": "specimen_480169178_intervention_pair_06038.npz", + "sample_ids": [ + "specimen_480169178:intervention:temporal_jitter@1:06038:0000:seed432305172", + "specimen_480169178:intervention:temporal_jitter@1:06038:0001:seed1862767041" + ] + }, + { + "count": 2, + "file": "specimen_480169178_intervention_pair_06039.npz", + "sample_ids": [ + "specimen_480169178:intervention:temporal_jitter@1:06039:0000:seed1442008569", + "specimen_480169178:intervention:temporal_jitter@1:06039:0001:seed1669741805" + ] + }, + { + "count": 2, + "file": "specimen_480169178_intervention_pair_06040.npz", + "sample_ids": [ + "specimen_480169178:intervention:temporal_jitter@1:06040:0000:seed161939995", + "specimen_480169178:intervention:temporal_jitter@1:06040:0001:seed644652508" + ] + }, + { + "count": 2, + "file": "specimen_480169178_intervention_pair_06041.npz", + "sample_ids": [ + "specimen_480169178:intervention:temporal_jitter@1:06041:0000:seed893379171", + "specimen_480169178:intervention:temporal_jitter@1:06041:0001:seed1356857691" + ] + }, + { + "count": 2, + "file": "specimen_480169178_intervention_pair_06042.npz", + "sample_ids": [ + "specimen_480169178:intervention:temporal_jitter@1:06042:0000:seed1541288562", + "specimen_480169178:intervention:temporal_jitter@1:06042:0001:seed964227257" + ] + }, + { + "count": 2, + "file": "specimen_480351780_intervention_pair_07939.npz", + "sample_ids": [ + "specimen_480351780:intervention:temporal_jitter@1:07939:0000:seed1494884129", + "specimen_480351780:intervention:temporal_jitter@1:07939:0001:seed811885240" + ] + }, + { + "count": 2, + "file": "specimen_480351780_intervention_pair_07940.npz", + "sample_ids": [ + "specimen_480351780:intervention:temporal_jitter@1:07940:0000:seed1100994928", + "specimen_480351780:intervention:temporal_jitter@1:07940:0001:seed422225766" + ] + }, + { + "count": 2, + "file": "specimen_480351780_intervention_pair_07941.npz", + "sample_ids": [ + "specimen_480351780:intervention:temporal_jitter@1:07941:0000:seed1627093853", + "specimen_480351780:intervention:temporal_jitter@1:07941:0001:seed227555750" + ] + }, + { + "count": 2, + "file": "specimen_480351780_intervention_pair_07942.npz", + "sample_ids": [ + "specimen_480351780:intervention:temporal_jitter@1:07942:0000:seed394781528", + "specimen_480351780:intervention:temporal_jitter@1:07942:0001:seed658682489" + ] + }, + { + "count": 2, + "file": "specimen_480351780_intervention_pair_07943.npz", + "sample_ids": [ + "specimen_480351780:intervention:temporal_jitter@1:07943:0000:seed6113454", + "specimen_480351780:intervention:temporal_jitter@1:07943:0001:seed89128583" + ] + }, + { + "count": 2, + "file": "specimen_480351780_intervention_pair_07944.npz", + "sample_ids": [ + "specimen_480351780:intervention:temporal_jitter@1:07944:0000:seed2111767328", + "specimen_480351780:intervention:temporal_jitter@1:07944:0001:seed1051083997" + ] + }, + { + "count": 2, + "file": "specimen_480351780_intervention_pair_07945.npz", + "sample_ids": [ + "specimen_480351780:intervention:temporal_jitter@1:07945:0000:seed1731716879", + "specimen_480351780:intervention:temporal_jitter@1:07945:0001:seed1834759228" + ] + }, + { + "count": 2, + "file": "specimen_480351780_intervention_pair_07946.npz", + "sample_ids": [ + "specimen_480351780:intervention:temporal_jitter@1:07946:0000:seed1828609970", + "specimen_480351780:intervention:temporal_jitter@1:07946:0001:seed1291705323" + ] + }, + { + "count": 2, + "file": "specimen_480351780_intervention_pair_07947.npz", + "sample_ids": [ + "specimen_480351780:intervention:temporal_jitter@1:07947:0000:seed511944436", + "specimen_480351780:intervention:temporal_jitter@1:07947:0001:seed326629244" + ] + }, + { + "count": 2, + "file": "specimen_480351780_intervention_pair_07948.npz", + "sample_ids": [ + "specimen_480351780:intervention:temporal_jitter@1:07948:0000:seed1727606593", + "specimen_480351780:intervention:temporal_jitter@1:07948:0001:seed118560473" + ] + }, + { + "count": 2, + "file": "specimen_480351780_intervention_pair_07949.npz", + "sample_ids": [ + "specimen_480351780:intervention:temporal_jitter@1:07949:0000:seed988126642", + "specimen_480351780:intervention:temporal_jitter@1:07949:0001:seed1403655545" + ] + }, + { + "count": 2, + "file": "specimen_480351780_intervention_pair_07950.npz", + "sample_ids": [ + "specimen_480351780:intervention:temporal_jitter@1:07950:0000:seed949349467", + "specimen_480351780:intervention:temporal_jitter@1:07950:0001:seed1528115425" + ] + }, + { + "count": 2, + "file": "specimen_480351780_intervention_pair_07951.npz", + "sample_ids": [ + "specimen_480351780:intervention:temporal_jitter@1:07951:0000:seed1687700459", + "specimen_480351780:intervention:temporal_jitter@1:07951:0001:seed856821082" + ] + }, + { + "count": 2, + "file": "specimen_480351780_intervention_pair_07952.npz", + "sample_ids": [ + "specimen_480351780:intervention:temporal_jitter@1:07952:0000:seed359984089", + "specimen_480351780:intervention:temporal_jitter@1:07952:0001:seed1991207329" + ] + }, + { + "count": 2, + "file": "specimen_480351780_intervention_pair_07953.npz", + "sample_ids": [ + "specimen_480351780:intervention:temporal_jitter@1:07953:0000:seed452563864", + "specimen_480351780:intervention:temporal_jitter@1:07953:0001:seed1108557088" + ] + }, + { + "count": 2, + "file": "specimen_480351780_intervention_pair_07954.npz", + "sample_ids": [ + "specimen_480351780:intervention:temporal_jitter@1:07954:0000:seed1076984719", + "specimen_480351780:intervention:temporal_jitter@1:07954:0001:seed1914556667" + ] + }, + { + "count": 2, + "file": "specimen_480351780_intervention_pair_07955.npz", + "sample_ids": [ + "specimen_480351780:intervention:temporal_jitter@1:07955:0000:seed1346052517", + "specimen_480351780:intervention:temporal_jitter@1:07955:0001:seed231831649" + ] + }, + { + "count": 2, + "file": "specimen_480351780_intervention_pair_07956.npz", + "sample_ids": [ + "specimen_480351780:intervention:temporal_jitter@1:07956:0000:seed1166886919", + "specimen_480351780:intervention:temporal_jitter@1:07956:0001:seed330362951" + ] + }, + { + "count": 2, + "file": "specimen_480351780_intervention_pair_07957.npz", + "sample_ids": [ + "specimen_480351780:intervention:temporal_jitter@1:07957:0000:seed1064431891", + "specimen_480351780:intervention:temporal_jitter@1:07957:0001:seed2105460522" + ] + }, + { + "count": 2, + "file": "specimen_480351780_intervention_pair_07958.npz", + "sample_ids": [ + "specimen_480351780:intervention:temporal_jitter@1:07958:0000:seed1513215115", + "specimen_480351780:intervention:temporal_jitter@1:07958:0001:seed426453418" + ] + }, + { + "count": 2, + "file": "specimen_480353286_intervention_pair_10250.npz", + "sample_ids": [ + "specimen_480353286:intervention:temporal_jitter@1:10250:0000:seed50612537", + "specimen_480353286:intervention:temporal_jitter@1:10250:0001:seed1187467652" + ] + }, + { + "count": 2, + "file": "specimen_480353286_intervention_pair_10251.npz", + "sample_ids": [ + "specimen_480353286:intervention:temporal_jitter@1:10251:0000:seed1490037800", + "specimen_480353286:intervention:temporal_jitter@1:10251:0001:seed962962460" + ] + }, + { + "count": 2, + "file": "specimen_480353286_intervention_pair_10252.npz", + "sample_ids": [ + "specimen_480353286:intervention:temporal_jitter@1:10252:0000:seed551319666", + "specimen_480353286:intervention:temporal_jitter@1:10252:0001:seed2077305332" + ] + }, + { + "count": 2, + "file": "specimen_480353286_intervention_pair_10253.npz", + "sample_ids": [ + "specimen_480353286:intervention:temporal_jitter@1:10253:0000:seed986332227", + "specimen_480353286:intervention:temporal_jitter@1:10253:0001:seed492270749" + ] + }, + { + "count": 2, + "file": "specimen_480353286_intervention_pair_10254.npz", + "sample_ids": [ + "specimen_480353286:intervention:temporal_jitter@1:10254:0000:seed991879846", + "specimen_480353286:intervention:temporal_jitter@1:10254:0001:seed2015409544" + ] + }, + { + "count": 2, + "file": "specimen_480353286_intervention_pair_10255.npz", + "sample_ids": [ + "specimen_480353286:intervention:temporal_jitter@1:10255:0000:seed632175595", + "specimen_480353286:intervention:temporal_jitter@1:10255:0001:seed1443801448" + ] + }, + { + "count": 2, + "file": "specimen_480353286_intervention_pair_10256.npz", + "sample_ids": [ + "specimen_480353286:intervention:temporal_jitter@1:10256:0000:seed1549054419", + "specimen_480353286:intervention:temporal_jitter@1:10256:0001:seed1523153460" + ] + }, + { + "count": 2, + "file": "specimen_480353286_intervention_pair_10257.npz", + "sample_ids": [ + "specimen_480353286:intervention:temporal_jitter@1:10257:0000:seed553512631", + "specimen_480353286:intervention:temporal_jitter@1:10257:0001:seed2006381582" + ] + }, + { + "count": 2, + "file": "specimen_480353286_intervention_pair_10258.npz", + "sample_ids": [ + "specimen_480353286:intervention:temporal_jitter@1:10258:0000:seed1732945801", + "specimen_480353286:intervention:temporal_jitter@1:10258:0001:seed754244502" + ] + }, + { + "count": 2, + "file": "specimen_480353286_intervention_pair_10259.npz", + "sample_ids": [ + "specimen_480353286:intervention:temporal_jitter@1:10259:0000:seed1966911377", + "specimen_480353286:intervention:temporal_jitter@1:10259:0001:seed555721708" + ] + }, + { + "count": 2, + "file": "specimen_480353286_intervention_pair_10260.npz", + "sample_ids": [ + "specimen_480353286:intervention:temporal_jitter@1:10260:0000:seed1093470801", + "specimen_480353286:intervention:temporal_jitter@1:10260:0001:seed595794117" + ] + }, + { + "count": 2, + "file": "specimen_480353286_intervention_pair_10261.npz", + "sample_ids": [ + "specimen_480353286:intervention:temporal_jitter@1:10261:0000:seed1283606481", + "specimen_480353286:intervention:temporal_jitter@1:10261:0001:seed1230615627" + ] + }, + { + "count": 2, + "file": "specimen_480353286_intervention_pair_10262.npz", + "sample_ids": [ + "specimen_480353286:intervention:temporal_jitter@1:10262:0000:seed1528447486", + "specimen_480353286:intervention:temporal_jitter@1:10262:0001:seed1313574840" + ] + }, + { + "count": 2, + "file": "specimen_480353286_intervention_pair_10263.npz", + "sample_ids": [ + "specimen_480353286:intervention:temporal_jitter@1:10263:0000:seed2116699999", + "specimen_480353286:intervention:temporal_jitter@1:10263:0001:seed18691461" + ] + }, + { + "count": 2, + "file": "specimen_480353286_intervention_pair_10264.npz", + "sample_ids": [ + "specimen_480353286:intervention:temporal_jitter@1:10264:0000:seed482876311", + "specimen_480353286:intervention:temporal_jitter@1:10264:0001:seed33126835" + ] + }, + { + "count": 2, + "file": "specimen_480353286_intervention_pair_10265.npz", + "sample_ids": [ + "specimen_480353286:intervention:temporal_jitter@1:10265:0000:seed350220460", + "specimen_480353286:intervention:temporal_jitter@1:10265:0001:seed2143196744" + ] + }, + { + "count": 2, + "file": "specimen_480353286_intervention_pair_10266.npz", + "sample_ids": [ + "specimen_480353286:intervention:temporal_jitter@1:10266:0000:seed309835241", + "specimen_480353286:intervention:temporal_jitter@1:10266:0001:seed1524820338" + ] + }, + { + "count": 2, + "file": "specimen_480353286_intervention_pair_10267.npz", + "sample_ids": [ + "specimen_480353286:intervention:temporal_jitter@1:10267:0000:seed2108674662", + "specimen_480353286:intervention:temporal_jitter@1:10267:0001:seed70286041" + ] + }, + { + "count": 2, + "file": "specimen_480353286_intervention_pair_10268.npz", + "sample_ids": [ + "specimen_480353286:intervention:temporal_jitter@1:10268:0000:seed481739075", + "specimen_480353286:intervention:temporal_jitter@1:10268:0001:seed705610242" + ] + }, + { + "count": 2, + "file": "specimen_480353286_intervention_pair_10269.npz", + "sample_ids": [ + "specimen_480353286:intervention:temporal_jitter@1:10269:0000:seed1262273991", + "specimen_480353286:intervention:temporal_jitter@1:10269:0001:seed800048238" + ] + }, + { + "count": 2, + "file": "specimen_484559000_intervention_pair_08897.npz", + "sample_ids": [ + "specimen_484559000:intervention:temporal_jitter@1:08897:0000:seed144313883", + "specimen_484559000:intervention:temporal_jitter@1:08897:0001:seed526257344" + ] + }, + { + "count": 2, + "file": "specimen_484559000_intervention_pair_08898.npz", + "sample_ids": [ + "specimen_484559000:intervention:temporal_jitter@1:08898:0000:seed1295000914", + "specimen_484559000:intervention:temporal_jitter@1:08898:0001:seed558726038" + ] + }, + { + "count": 2, + "file": "specimen_484559000_intervention_pair_08899.npz", + "sample_ids": [ + "specimen_484559000:intervention:temporal_jitter@1:08899:0000:seed824386398", + "specimen_484559000:intervention:temporal_jitter@1:08899:0001:seed1452559586" + ] + }, + { + "count": 2, + "file": "specimen_484559000_intervention_pair_08900.npz", + "sample_ids": [ + "specimen_484559000:intervention:temporal_jitter@1:08900:0000:seed1243013732", + "specimen_484559000:intervention:temporal_jitter@1:08900:0001:seed799720509" + ] + }, + { + "count": 2, + "file": "specimen_484559000_intervention_pair_08901.npz", + "sample_ids": [ + "specimen_484559000:intervention:temporal_jitter@1:08901:0000:seed125142511", + "specimen_484559000:intervention:temporal_jitter@1:08901:0001:seed936314796" + ] + }, + { + "count": 2, + "file": "specimen_484559000_intervention_pair_08902.npz", + "sample_ids": [ + "specimen_484559000:intervention:temporal_jitter@1:08902:0000:seed2029822673", + "specimen_484559000:intervention:temporal_jitter@1:08902:0001:seed207532882" + ] + }, + { + "count": 2, + "file": "specimen_484559000_intervention_pair_08903.npz", + "sample_ids": [ + "specimen_484559000:intervention:temporal_jitter@1:08903:0000:seed200745458", + "specimen_484559000:intervention:temporal_jitter@1:08903:0001:seed1468339322" + ] + }, + { + "count": 2, + "file": "specimen_484559000_intervention_pair_08904.npz", + "sample_ids": [ + "specimen_484559000:intervention:temporal_jitter@1:08904:0000:seed157752009", + "specimen_484559000:intervention:temporal_jitter@1:08904:0001:seed1599379013" + ] + }, + { + "count": 2, + "file": "specimen_484559000_intervention_pair_08905.npz", + "sample_ids": [ + "specimen_484559000:intervention:temporal_jitter@1:08905:0000:seed1145152289", + "specimen_484559000:intervention:temporal_jitter@1:08905:0001:seed1286369257" + ] + }, + { + "count": 2, + "file": "specimen_484559000_intervention_pair_08906.npz", + "sample_ids": [ + "specimen_484559000:intervention:temporal_jitter@1:08906:0000:seed1044473672", + "specimen_484559000:intervention:temporal_jitter@1:08906:0001:seed445135158" + ] + }, + { + "count": 2, + "file": "specimen_484559000_intervention_pair_08907.npz", + "sample_ids": [ + "specimen_484559000:intervention:temporal_jitter@1:08907:0000:seed659577793", + "specimen_484559000:intervention:temporal_jitter@1:08907:0001:seed459963406" + ] + }, + { + "count": 2, + "file": "specimen_484559000_intervention_pair_08908.npz", + "sample_ids": [ + "specimen_484559000:intervention:temporal_jitter@1:08908:0000:seed1517457520", + "specimen_484559000:intervention:temporal_jitter@1:08908:0001:seed1716303305" + ] + }, + { + "count": 2, + "file": "specimen_484559000_intervention_pair_08909.npz", + "sample_ids": [ + "specimen_484559000:intervention:temporal_jitter@1:08909:0000:seed1652756525", + "specimen_484559000:intervention:temporal_jitter@1:08909:0001:seed452439433" + ] + }, + { + "count": 2, + "file": "specimen_484559000_intervention_pair_08910.npz", + "sample_ids": [ + "specimen_484559000:intervention:temporal_jitter@1:08910:0000:seed218885339", + "specimen_484559000:intervention:temporal_jitter@1:08910:0001:seed1499481187" + ] + }, + { + "count": 2, + "file": "specimen_484559000_intervention_pair_08911.npz", + "sample_ids": [ + "specimen_484559000:intervention:temporal_jitter@1:08911:0000:seed1079041129", + "specimen_484559000:intervention:temporal_jitter@1:08911:0001:seed410047637" + ] + }, + { + "count": 2, + "file": "specimen_484559000_intervention_pair_08912.npz", + "sample_ids": [ + "specimen_484559000:intervention:temporal_jitter@1:08912:0000:seed569106658", + "specimen_484559000:intervention:temporal_jitter@1:08912:0001:seed1771797011" + ] + }, + { + "count": 2, + "file": "specimen_484559000_intervention_pair_08913.npz", + "sample_ids": [ + "specimen_484559000:intervention:temporal_jitter@1:08913:0000:seed332067796", + "specimen_484559000:intervention:temporal_jitter@1:08913:0001:seed1841205409" + ] + }, + { + "count": 2, + "file": "specimen_484559000_intervention_pair_08914.npz", + "sample_ids": [ + "specimen_484559000:intervention:temporal_jitter@1:08914:0000:seed512473817", + "specimen_484559000:intervention:temporal_jitter@1:08914:0001:seed1059653776" + ] + }, + { + "count": 2, + "file": "specimen_484559000_intervention_pair_08915.npz", + "sample_ids": [ + "specimen_484559000:intervention:temporal_jitter@1:08915:0000:seed407761053", + "specimen_484559000:intervention:temporal_jitter@1:08915:0001:seed230907309" + ] + }, + { + "count": 2, + "file": "specimen_484559000_intervention_pair_08916.npz", + "sample_ids": [ + "specimen_484559000:intervention:temporal_jitter@1:08916:0000:seed1445870599", + "specimen_484559000:intervention:temporal_jitter@1:08916:0001:seed1890464186" + ] + }, + { + "count": 2, + "file": "specimen_485574832_intervention_pair_02754.npz", + "sample_ids": [ + "specimen_485574832:intervention:temporal_jitter@1:02754:0000:seed1387491931", + "specimen_485574832:intervention:temporal_jitter@1:02754:0001:seed1260940099" + ] + }, + { + "count": 2, + "file": "specimen_485574832_intervention_pair_02755.npz", + "sample_ids": [ + "specimen_485574832:intervention:temporal_jitter@1:02755:0000:seed101624843", + "specimen_485574832:intervention:temporal_jitter@1:02755:0001:seed1975649352" + ] + }, + { + "count": 2, + "file": "specimen_485574832_intervention_pair_02756.npz", + "sample_ids": [ + "specimen_485574832:intervention:temporal_jitter@1:02756:0000:seed1204695175", + "specimen_485574832:intervention:temporal_jitter@1:02756:0001:seed1078026608" + ] + }, + { + "count": 2, + "file": "specimen_485574832_intervention_pair_02757.npz", + "sample_ids": [ + "specimen_485574832:intervention:temporal_jitter@1:02757:0000:seed1470740785", + "specimen_485574832:intervention:temporal_jitter@1:02757:0001:seed1360391653" + ] + }, + { + "count": 2, + "file": "specimen_485574832_intervention_pair_02758.npz", + "sample_ids": [ + "specimen_485574832:intervention:temporal_jitter@1:02758:0000:seed1017005860", + "specimen_485574832:intervention:temporal_jitter@1:02758:0001:seed12993293" + ] + }, + { + "count": 2, + "file": "specimen_485574832_intervention_pair_02759.npz", + "sample_ids": [ + "specimen_485574832:intervention:temporal_jitter@1:02759:0000:seed1309316666", + "specimen_485574832:intervention:temporal_jitter@1:02759:0001:seed1238334936" + ] + }, + { + "count": 2, + "file": "specimen_485574832_intervention_pair_02760.npz", + "sample_ids": [ + "specimen_485574832:intervention:temporal_jitter@1:02760:0000:seed1237000748", + "specimen_485574832:intervention:temporal_jitter@1:02760:0001:seed629240177" + ] + }, + { + "count": 2, + "file": "specimen_485574832_intervention_pair_02761.npz", + "sample_ids": [ + "specimen_485574832:intervention:temporal_jitter@1:02761:0000:seed1841904721", + "specimen_485574832:intervention:temporal_jitter@1:02761:0001:seed438749645" + ] + }, + { + "count": 2, + "file": "specimen_485574832_intervention_pair_02762.npz", + "sample_ids": [ + "specimen_485574832:intervention:temporal_jitter@1:02762:0000:seed1271184428", + "specimen_485574832:intervention:temporal_jitter@1:02762:0001:seed1011485473" + ] + }, + { + "count": 2, + "file": "specimen_485574832_intervention_pair_02763.npz", + "sample_ids": [ + "specimen_485574832:intervention:temporal_jitter@1:02763:0000:seed2061822049", + "specimen_485574832:intervention:temporal_jitter@1:02763:0001:seed1627992350" + ] + }, + { + "count": 2, + "file": "specimen_485574832_intervention_pair_02764.npz", + "sample_ids": [ + "specimen_485574832:intervention:temporal_jitter@1:02764:0000:seed1451069906", + "specimen_485574832:intervention:temporal_jitter@1:02764:0001:seed131786075" + ] + }, + { + "count": 2, + "file": "specimen_485574832_intervention_pair_02765.npz", + "sample_ids": [ + "specimen_485574832:intervention:temporal_jitter@1:02765:0000:seed2137170384", + "specimen_485574832:intervention:temporal_jitter@1:02765:0001:seed1700701040" + ] + }, + { + "count": 2, + "file": "specimen_485574832_intervention_pair_02766.npz", + "sample_ids": [ + "specimen_485574832:intervention:temporal_jitter@1:02766:0000:seed1857637477", + "specimen_485574832:intervention:temporal_jitter@1:02766:0001:seed1336254359" + ] + }, + { + "count": 2, + "file": "specimen_485574832_intervention_pair_02767.npz", + "sample_ids": [ + "specimen_485574832:intervention:temporal_jitter@1:02767:0000:seed1067517123", + "specimen_485574832:intervention:temporal_jitter@1:02767:0001:seed835046320" + ] + }, + { + "count": 2, + "file": "specimen_485574832_intervention_pair_02768.npz", + "sample_ids": [ + "specimen_485574832:intervention:temporal_jitter@1:02768:0000:seed469989082", + "specimen_485574832:intervention:temporal_jitter@1:02768:0001:seed813947897" + ] + }, + { + "count": 2, + "file": "specimen_485574832_intervention_pair_02769.npz", + "sample_ids": [ + "specimen_485574832:intervention:temporal_jitter@1:02769:0000:seed1543619439", + "specimen_485574832:intervention:temporal_jitter@1:02769:0001:seed1112567293" + ] + }, + { + "count": 2, + "file": "specimen_485574832_intervention_pair_02770.npz", + "sample_ids": [ + "specimen_485574832:intervention:temporal_jitter@1:02770:0000:seed888370756", + "specimen_485574832:intervention:temporal_jitter@1:02770:0001:seed1730511721" + ] + }, + { + "count": 2, + "file": "specimen_485574832_intervention_pair_02771.npz", + "sample_ids": [ + "specimen_485574832:intervention:temporal_jitter@1:02771:0000:seed1278195599", + "specimen_485574832:intervention:temporal_jitter@1:02771:0001:seed811136379" + ] + }, + { + "count": 2, + "file": "specimen_485574832_intervention_pair_02772.npz", + "sample_ids": [ + "specimen_485574832:intervention:temporal_jitter@1:02772:0000:seed339964634", + "specimen_485574832:intervention:temporal_jitter@1:02772:0001:seed2123663351" + ] + }, + { + "count": 2, + "file": "specimen_485574832_intervention_pair_02773.npz", + "sample_ids": [ + "specimen_485574832:intervention:temporal_jitter@1:02773:0000:seed837263639", + "specimen_485574832:intervention:temporal_jitter@1:02773:0001:seed2060113412" + ] + }, + { + "count": 2, + "file": "specimen_488683425_intervention_pair_03149.npz", + "sample_ids": [ + "specimen_488683425:intervention:temporal_jitter@1:03149:0000:seed150156659", + "specimen_488683425:intervention:temporal_jitter@1:03149:0001:seed783550318" + ] + }, + { + "count": 2, + "file": "specimen_488683425_intervention_pair_03150.npz", + "sample_ids": [ + "specimen_488683425:intervention:temporal_jitter@1:03150:0000:seed496721280", + "specimen_488683425:intervention:temporal_jitter@1:03150:0001:seed1424633616" + ] + }, + { + "count": 2, + "file": "specimen_488683425_intervention_pair_03151.npz", + "sample_ids": [ + "specimen_488683425:intervention:temporal_jitter@1:03151:0000:seed750869439", + "specimen_488683425:intervention:temporal_jitter@1:03151:0001:seed667668320" + ] + }, + { + "count": 2, + "file": "specimen_488683425_intervention_pair_03152.npz", + "sample_ids": [ + "specimen_488683425:intervention:temporal_jitter@1:03152:0000:seed526285365", + "specimen_488683425:intervention:temporal_jitter@1:03152:0001:seed2042171568" + ] + }, + { + "count": 2, + "file": "specimen_488683425_intervention_pair_03153.npz", + "sample_ids": [ + "specimen_488683425:intervention:temporal_jitter@1:03153:0000:seed1209500036", + "specimen_488683425:intervention:temporal_jitter@1:03153:0001:seed583386698" + ] + }, + { + "count": 2, + "file": "specimen_488683425_intervention_pair_03154.npz", + "sample_ids": [ + "specimen_488683425:intervention:temporal_jitter@1:03154:0000:seed1015846948", + "specimen_488683425:intervention:temporal_jitter@1:03154:0001:seed122596451" + ] + }, + { + "count": 2, + "file": "specimen_488683425_intervention_pair_03155.npz", + "sample_ids": [ + "specimen_488683425:intervention:temporal_jitter@1:03155:0000:seed18689432", + "specimen_488683425:intervention:temporal_jitter@1:03155:0001:seed412735081" + ] + }, + { + "count": 2, + "file": "specimen_488683425_intervention_pair_03156.npz", + "sample_ids": [ + "specimen_488683425:intervention:temporal_jitter@1:03156:0000:seed694308892", + "specimen_488683425:intervention:temporal_jitter@1:03156:0001:seed4217215" + ] + }, + { + "count": 2, + "file": "specimen_488683425_intervention_pair_03157.npz", + "sample_ids": [ + "specimen_488683425:intervention:temporal_jitter@1:03157:0000:seed996819491", + "specimen_488683425:intervention:temporal_jitter@1:03157:0001:seed1454408194" + ] + }, + { + "count": 2, + "file": "specimen_488683425_intervention_pair_03158.npz", + "sample_ids": [ + "specimen_488683425:intervention:temporal_jitter@1:03158:0000:seed674564880", + "specimen_488683425:intervention:temporal_jitter@1:03158:0001:seed1284432982" + ] + }, + { + "count": 2, + "file": "specimen_488683425_intervention_pair_03159.npz", + "sample_ids": [ + "specimen_488683425:intervention:temporal_jitter@1:03159:0000:seed1825397726", + "specimen_488683425:intervention:temporal_jitter@1:03159:0001:seed859177593" + ] + }, + { + "count": 2, + "file": "specimen_488683425_intervention_pair_03160.npz", + "sample_ids": [ + "specimen_488683425:intervention:temporal_jitter@1:03160:0000:seed70405916", + "specimen_488683425:intervention:temporal_jitter@1:03160:0001:seed946763220" + ] + }, + { + "count": 2, + "file": "specimen_488683425_intervention_pair_03161.npz", + "sample_ids": [ + "specimen_488683425:intervention:temporal_jitter@1:03161:0000:seed74678649", + "specimen_488683425:intervention:temporal_jitter@1:03161:0001:seed182527961" + ] + }, + { + "count": 2, + "file": "specimen_488683425_intervention_pair_03162.npz", + "sample_ids": [ + "specimen_488683425:intervention:temporal_jitter@1:03162:0000:seed849593492", + "specimen_488683425:intervention:temporal_jitter@1:03162:0001:seed1752144464" + ] + }, + { + "count": 2, + "file": "specimen_488683425_intervention_pair_03163.npz", + "sample_ids": [ + "specimen_488683425:intervention:temporal_jitter@1:03163:0000:seed1353534791", + "specimen_488683425:intervention:temporal_jitter@1:03163:0001:seed1913745460" + ] + }, + { + "count": 2, + "file": "specimen_488683425_intervention_pair_03164.npz", + "sample_ids": [ + "specimen_488683425:intervention:temporal_jitter@1:03164:0000:seed869642653", + "specimen_488683425:intervention:temporal_jitter@1:03164:0001:seed1290563233" + ] + }, + { + "count": 2, + "file": "specimen_488683425_intervention_pair_03165.npz", + "sample_ids": [ + "specimen_488683425:intervention:temporal_jitter@1:03165:0000:seed168795999", + "specimen_488683425:intervention:temporal_jitter@1:03165:0001:seed1840611077" + ] + }, + { + "count": 2, + "file": "specimen_488683425_intervention_pair_03166.npz", + "sample_ids": [ + "specimen_488683425:intervention:temporal_jitter@1:03166:0000:seed133962527", + "specimen_488683425:intervention:temporal_jitter@1:03166:0001:seed1919375121" + ] + }, + { + "count": 2, + "file": "specimen_488683425_intervention_pair_03167.npz", + "sample_ids": [ + "specimen_488683425:intervention:temporal_jitter@1:03167:0000:seed1866280543", + "specimen_488683425:intervention:temporal_jitter@1:03167:0001:seed1609587968" + ] + }, + { + "count": 2, + "file": "specimen_488683425_intervention_pair_03168.npz", + "sample_ids": [ + "specimen_488683425:intervention:temporal_jitter@1:03168:0000:seed506548050", + "specimen_488683425:intervention:temporal_jitter@1:03168:0001:seed760829452" + ] + } + ], + "version": 1 +} diff --git a/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00838.json b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00838.json new file mode 100644 index 0000000000000000000000000000000000000000..06984840ddfe92143cc0584a571f8a26b9dc3788 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00838.json @@ -0,0 +1,96 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 291.34103848200175, + "exc_gmax_scale": 1.0, + "generator": { + "backend": "neuron", + "biophysics_hoc_sha256": "dec2a62342faaeeca6436110472f9485e069a434ef993649c6f2820c56cc28f3", + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 1.0, + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "mechanism_files": [ + "CaDynamics_E2.mod", + "Ca_HVA.mod", + "Ca_LVAst.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "K_Pst.mod", + "K_Tst.mod", + "NaTa_t.mod", + "NaTs2_t.mod", + "Nap_Et2.mod", + "SK_E2.mod", + "SKv3_1.mod" + ], + "mechanisms_sha256": "f6470b942dc1bbf8ce20e5c561077bfacb294749494f4137c09634f1d283721f", + "morphology_sha256": "a8afc0925afec1dd9241528ee6ccfdcb1c321904d876835990592c2573567383", + "neuron_version": "9.0.2", + "nseg_policy": "d_lambda", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "hay", + "template_hoc_sha256": "c8c603bf3a9d1f595841b98fdb455d24301d0c4f6edbfc5f3ad67fa6b834f7fb", + "v_init_mv": -76.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every source site is connected: each basal/apical source site is placed on the target segment of the same compartment type nearest in normalized arclength, so several sites can share a segment.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 999, + "mean": 999.0, + "min": 999 + }, + "n_traces": 2, + "policy": "all_sites_by_type_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "neuronio_hay_cell1", + "morphology_path": "${AXOBENCH_SOURCE_ROOT}/morphologies/cell1.asc", + "samples": 2, + "shard_index": 838, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00838.npz b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00838.npz new file mode 100644 index 0000000000000000000000000000000000000000..4e5cce5b5b93cf0f84048c5ae4f7bfca7b07a0c7 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00838.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1d2f182677c3b5d4c4237f29f0b7c16bda653424086aafb838533fa040b54a4a +size 1408058 diff --git a/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00839.json b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00839.json new file mode 100644 index 0000000000000000000000000000000000000000..11c1207d2c4d77fc9a00b22a33101416e46c0d7b --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00839.json @@ -0,0 +1,96 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 290.7989180930017, + "exc_gmax_scale": 1.0, + "generator": { + "backend": "neuron", + "biophysics_hoc_sha256": "dec2a62342faaeeca6436110472f9485e069a434ef993649c6f2820c56cc28f3", + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 1.0, + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "mechanism_files": [ + "CaDynamics_E2.mod", + "Ca_HVA.mod", + "Ca_LVAst.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "K_Pst.mod", + "K_Tst.mod", + "NaTa_t.mod", + "NaTs2_t.mod", + "Nap_Et2.mod", + "SK_E2.mod", + "SKv3_1.mod" + ], + "mechanisms_sha256": "f6470b942dc1bbf8ce20e5c561077bfacb294749494f4137c09634f1d283721f", + "morphology_sha256": "a8afc0925afec1dd9241528ee6ccfdcb1c321904d876835990592c2573567383", + "neuron_version": "9.0.2", + "nseg_policy": "d_lambda", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "hay", + "template_hoc_sha256": "c8c603bf3a9d1f595841b98fdb455d24301d0c4f6edbfc5f3ad67fa6b834f7fb", + "v_init_mv": -76.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every source site is connected: each basal/apical source site is placed on the target segment of the same compartment type nearest in normalized arclength, so several sites can share a segment.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 999, + "mean": 999.0, + "min": 999 + }, + "n_traces": 2, + "policy": "all_sites_by_type_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "neuronio_hay_cell1", + "morphology_path": "${AXOBENCH_SOURCE_ROOT}/morphologies/cell1.asc", + "samples": 2, + "shard_index": 839, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00839.npz b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00839.npz new file mode 100644 index 0000000000000000000000000000000000000000..60df83c22c55b0cce17034ac7ef00b40e4fbbb2c --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00839.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a7dc25c1af66ab10d88919aed9a8a357c9dd1ce2003b6671868866a58d806c99 +size 1440966 diff --git a/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00840.json b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00840.json new file mode 100644 index 0000000000000000000000000000000000000000..a39028a32dcf188f39c4dfe5b3a6fe1cc052775e --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00840.json @@ -0,0 +1,96 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 290.52542230700055, + "exc_gmax_scale": 1.0, + "generator": { + "backend": "neuron", + "biophysics_hoc_sha256": "dec2a62342faaeeca6436110472f9485e069a434ef993649c6f2820c56cc28f3", + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 1.0, + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "mechanism_files": [ + "CaDynamics_E2.mod", + "Ca_HVA.mod", + "Ca_LVAst.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "K_Pst.mod", + "K_Tst.mod", + "NaTa_t.mod", + "NaTs2_t.mod", + "Nap_Et2.mod", + "SK_E2.mod", + "SKv3_1.mod" + ], + "mechanisms_sha256": "f6470b942dc1bbf8ce20e5c561077bfacb294749494f4137c09634f1d283721f", + "morphology_sha256": "a8afc0925afec1dd9241528ee6ccfdcb1c321904d876835990592c2573567383", + "neuron_version": "9.0.2", + "nseg_policy": "d_lambda", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "hay", + "template_hoc_sha256": "c8c603bf3a9d1f595841b98fdb455d24301d0c4f6edbfc5f3ad67fa6b834f7fb", + "v_init_mv": -76.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every source site is connected: each basal/apical source site is placed on the target segment of the same compartment type nearest in normalized arclength, so several sites can share a segment.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 999, + "mean": 999.0, + "min": 999 + }, + "n_traces": 2, + "policy": "all_sites_by_type_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "neuronio_hay_cell1", + "morphology_path": "${AXOBENCH_SOURCE_ROOT}/morphologies/cell1.asc", + "samples": 2, + "shard_index": 840, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00840.npz b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00840.npz new file mode 100644 index 0000000000000000000000000000000000000000..86ad67aa5d63466c033eec5947de46d2309b8f8c --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00840.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f45adb16520a991669668d04dd10baface381ae105db8f81b5c751b0a374823e +size 1471285 diff --git a/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00841.json b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00841.json new file mode 100644 index 0000000000000000000000000000000000000000..83b2d4facf1e38165bfc2b1ebacb3254bba62130 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00841.json @@ -0,0 +1,96 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 291.3405488569988, + "exc_gmax_scale": 1.0, + "generator": { + "backend": "neuron", + "biophysics_hoc_sha256": "dec2a62342faaeeca6436110472f9485e069a434ef993649c6f2820c56cc28f3", + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 1.0, + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "mechanism_files": [ + "CaDynamics_E2.mod", + "Ca_HVA.mod", + "Ca_LVAst.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "K_Pst.mod", + "K_Tst.mod", + "NaTa_t.mod", + "NaTs2_t.mod", + "Nap_Et2.mod", + "SK_E2.mod", + "SKv3_1.mod" + ], + "mechanisms_sha256": "f6470b942dc1bbf8ce20e5c561077bfacb294749494f4137c09634f1d283721f", + "morphology_sha256": "a8afc0925afec1dd9241528ee6ccfdcb1c321904d876835990592c2573567383", + "neuron_version": "9.0.2", + "nseg_policy": "d_lambda", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "hay", + "template_hoc_sha256": "c8c603bf3a9d1f595841b98fdb455d24301d0c4f6edbfc5f3ad67fa6b834f7fb", + "v_init_mv": -76.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every source site is connected: each basal/apical source site is placed on the target segment of the same compartment type nearest in normalized arclength, so several sites can share a segment.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 999, + "mean": 999.0, + "min": 999 + }, + "n_traces": 2, + "policy": "all_sites_by_type_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "neuronio_hay_cell1", + "morphology_path": "${AXOBENCH_SOURCE_ROOT}/morphologies/cell1.asc", + "samples": 2, + "shard_index": 841, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00841.npz b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00841.npz new file mode 100644 index 0000000000000000000000000000000000000000..773cfec7ae40dd0a86e192b3950f7ae26964fec4 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00841.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:5043262e8694b39384a7330671d52730bebc8b033834a1e8b91e4c574c766f20 +size 1449340 diff --git a/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00842.json b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00842.json new file mode 100644 index 0000000000000000000000000000000000000000..ab4ecde1ebb6f4f21f836d6e7f4be0d015da50d6 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00842.json @@ -0,0 +1,96 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 290.93026197299696, + "exc_gmax_scale": 1.0, + "generator": { + "backend": "neuron", + "biophysics_hoc_sha256": "dec2a62342faaeeca6436110472f9485e069a434ef993649c6f2820c56cc28f3", + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 1.0, + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "mechanism_files": [ + "CaDynamics_E2.mod", + "Ca_HVA.mod", + "Ca_LVAst.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "K_Pst.mod", + "K_Tst.mod", + "NaTa_t.mod", + "NaTs2_t.mod", + "Nap_Et2.mod", + "SK_E2.mod", + "SKv3_1.mod" + ], + "mechanisms_sha256": "f6470b942dc1bbf8ce20e5c561077bfacb294749494f4137c09634f1d283721f", + "morphology_sha256": "a8afc0925afec1dd9241528ee6ccfdcb1c321904d876835990592c2573567383", + "neuron_version": "9.0.2", + "nseg_policy": "d_lambda", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "hay", + "template_hoc_sha256": "c8c603bf3a9d1f595841b98fdb455d24301d0c4f6edbfc5f3ad67fa6b834f7fb", + "v_init_mv": -76.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every source site is connected: each basal/apical source site is placed on the target segment of the same compartment type nearest in normalized arclength, so several sites can share a segment.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 999, + "mean": 999.0, + "min": 999 + }, + "n_traces": 2, + "policy": "all_sites_by_type_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "neuronio_hay_cell1", + "morphology_path": "${AXOBENCH_SOURCE_ROOT}/morphologies/cell1.asc", + "samples": 2, + "shard_index": 842, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00842.npz b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00842.npz new file mode 100644 index 0000000000000000000000000000000000000000..98690864b232334988b4b4bd11df5bc1c5bc37ee --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00842.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ec0ddc56a93c131b15d684a739047ce924d19151c5cadb6fbee5e255bc1ede6e +size 1412712 diff --git a/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00843.json b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00843.json new file mode 100644 index 0000000000000000000000000000000000000000..d0061ef6224863640f63d2b6bec83083a53a5385 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00843.json @@ -0,0 +1,96 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 289.861526703, + "exc_gmax_scale": 1.0, + "generator": { + "backend": "neuron", + "biophysics_hoc_sha256": "dec2a62342faaeeca6436110472f9485e069a434ef993649c6f2820c56cc28f3", + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 1.0, + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "mechanism_files": [ + "CaDynamics_E2.mod", + "Ca_HVA.mod", + "Ca_LVAst.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "K_Pst.mod", + "K_Tst.mod", + "NaTa_t.mod", + "NaTs2_t.mod", + "Nap_Et2.mod", + "SK_E2.mod", + "SKv3_1.mod" + ], + "mechanisms_sha256": "f6470b942dc1bbf8ce20e5c561077bfacb294749494f4137c09634f1d283721f", + "morphology_sha256": "a8afc0925afec1dd9241528ee6ccfdcb1c321904d876835990592c2573567383", + "neuron_version": "9.0.2", + "nseg_policy": "d_lambda", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "hay", + "template_hoc_sha256": "c8c603bf3a9d1f595841b98fdb455d24301d0c4f6edbfc5f3ad67fa6b834f7fb", + "v_init_mv": -76.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every source site is connected: each basal/apical source site is placed on the target segment of the same compartment type nearest in normalized arclength, so several sites can share a segment.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 999, + "mean": 999.0, + "min": 999 + }, + "n_traces": 2, + "policy": "all_sites_by_type_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "neuronio_hay_cell1", + "morphology_path": "${AXOBENCH_SOURCE_ROOT}/morphologies/cell1.asc", + "samples": 2, + "shard_index": 843, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00843.npz b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00843.npz new file mode 100644 index 0000000000000000000000000000000000000000..b9bce62cd7de18e6a1caaad59421a836a7cf6a7f --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00843.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:6acc4414501a107116913387a437cb67055d5aca82c7214b06775b041a0e574a +size 1418053 diff --git a/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00844.json b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00844.json new file mode 100644 index 0000000000000000000000000000000000000000..ac5e5f098ac4c318781c6587552a15b0944dc0e2 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00844.json @@ -0,0 +1,96 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 292.2022024529979, + "exc_gmax_scale": 1.0, + "generator": { + "backend": "neuron", + "biophysics_hoc_sha256": "dec2a62342faaeeca6436110472f9485e069a434ef993649c6f2820c56cc28f3", + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 1.0, + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "mechanism_files": [ + "CaDynamics_E2.mod", + "Ca_HVA.mod", + "Ca_LVAst.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "K_Pst.mod", + "K_Tst.mod", + "NaTa_t.mod", + "NaTs2_t.mod", + "Nap_Et2.mod", + "SK_E2.mod", + "SKv3_1.mod" + ], + "mechanisms_sha256": "f6470b942dc1bbf8ce20e5c561077bfacb294749494f4137c09634f1d283721f", + "morphology_sha256": "a8afc0925afec1dd9241528ee6ccfdcb1c321904d876835990592c2573567383", + "neuron_version": "9.0.2", + "nseg_policy": "d_lambda", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "hay", + "template_hoc_sha256": "c8c603bf3a9d1f595841b98fdb455d24301d0c4f6edbfc5f3ad67fa6b834f7fb", + "v_init_mv": -76.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every source site is connected: each basal/apical source site is placed on the target segment of the same compartment type nearest in normalized arclength, so several sites can share a segment.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 999, + "mean": 999.0, + "min": 999 + }, + "n_traces": 2, + "policy": "all_sites_by_type_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "neuronio_hay_cell1", + "morphology_path": "${AXOBENCH_SOURCE_ROOT}/morphologies/cell1.asc", + "samples": 2, + "shard_index": 844, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00844.npz b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00844.npz new file mode 100644 index 0000000000000000000000000000000000000000..1b989fdf6621f1c72ad469ed291e6531c9820fd7 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00844.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b13bb8e82d3d697ab31520f5f1717353a058feb2dcfdbc09ac3baf67e1a03c82 +size 1427845 diff --git a/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00845.json b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00845.json new file mode 100644 index 0000000000000000000000000000000000000000..21aef3a433b4e3599da7b3fa45b69e7de853118b --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00845.json @@ -0,0 +1,96 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 292.4693096910014, + "exc_gmax_scale": 1.0, + "generator": { + "backend": "neuron", + "biophysics_hoc_sha256": "dec2a62342faaeeca6436110472f9485e069a434ef993649c6f2820c56cc28f3", + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 1.0, + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "mechanism_files": [ + "CaDynamics_E2.mod", + "Ca_HVA.mod", + "Ca_LVAst.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "K_Pst.mod", + "K_Tst.mod", + "NaTa_t.mod", + "NaTs2_t.mod", + "Nap_Et2.mod", + "SK_E2.mod", + "SKv3_1.mod" + ], + "mechanisms_sha256": "f6470b942dc1bbf8ce20e5c561077bfacb294749494f4137c09634f1d283721f", + "morphology_sha256": "a8afc0925afec1dd9241528ee6ccfdcb1c321904d876835990592c2573567383", + "neuron_version": "9.0.2", + "nseg_policy": "d_lambda", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "hay", + "template_hoc_sha256": "c8c603bf3a9d1f595841b98fdb455d24301d0c4f6edbfc5f3ad67fa6b834f7fb", + "v_init_mv": -76.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every source site is connected: each basal/apical source site is placed on the target segment of the same compartment type nearest in normalized arclength, so several sites can share a segment.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 999, + "mean": 999.0, + "min": 999 + }, + "n_traces": 2, + "policy": "all_sites_by_type_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "neuronio_hay_cell1", + "morphology_path": "${AXOBENCH_SOURCE_ROOT}/morphologies/cell1.asc", + "samples": 2, + "shard_index": 845, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00845.npz b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00845.npz new file mode 100644 index 0000000000000000000000000000000000000000..d71bf00cfde505db10027cf2e632b6f0e04bba73 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00845.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:132a4ec40d828266b630d955007daaeee95a010d306e28d3e83b79833c029faa +size 1415067 diff --git a/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00846.json b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00846.json new file mode 100644 index 0000000000000000000000000000000000000000..af7f26504d952a9362256287c163a921908a59ce --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00846.json @@ -0,0 +1,96 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 291.8491735259995, + "exc_gmax_scale": 1.0, + "generator": { + "backend": "neuron", + "biophysics_hoc_sha256": "dec2a62342faaeeca6436110472f9485e069a434ef993649c6f2820c56cc28f3", + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 1.0, + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "mechanism_files": [ + "CaDynamics_E2.mod", + "Ca_HVA.mod", + "Ca_LVAst.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "K_Pst.mod", + "K_Tst.mod", + "NaTa_t.mod", + "NaTs2_t.mod", + "Nap_Et2.mod", + "SK_E2.mod", + "SKv3_1.mod" + ], + "mechanisms_sha256": "f6470b942dc1bbf8ce20e5c561077bfacb294749494f4137c09634f1d283721f", + "morphology_sha256": "a8afc0925afec1dd9241528ee6ccfdcb1c321904d876835990592c2573567383", + "neuron_version": "9.0.2", + "nseg_policy": "d_lambda", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "hay", + "template_hoc_sha256": "c8c603bf3a9d1f595841b98fdb455d24301d0c4f6edbfc5f3ad67fa6b834f7fb", + "v_init_mv": -76.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every source site is connected: each basal/apical source site is placed on the target segment of the same compartment type nearest in normalized arclength, so several sites can share a segment.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 999, + "mean": 999.0, + "min": 999 + }, + "n_traces": 2, + "policy": "all_sites_by_type_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "neuronio_hay_cell1", + "morphology_path": "${AXOBENCH_SOURCE_ROOT}/morphologies/cell1.asc", + "samples": 2, + "shard_index": 846, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00846.npz b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00846.npz new file mode 100644 index 0000000000000000000000000000000000000000..01fcfb8c050100d863a43962dc87729040fc71c9 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00846.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:869d62d639f1d0a9f03c6e82c385b80a202101dbb8e271028a006e7f27191f37 +size 1415829 diff --git a/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00847.json b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00847.json new file mode 100644 index 0000000000000000000000000000000000000000..7be9349d8158cec7855fc4139d47708b9ad2a214 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00847.json @@ -0,0 +1,96 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 297.189149140002, + "exc_gmax_scale": 1.0, + "generator": { + "backend": "neuron", + "biophysics_hoc_sha256": "dec2a62342faaeeca6436110472f9485e069a434ef993649c6f2820c56cc28f3", + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 1.0, + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "mechanism_files": [ + "CaDynamics_E2.mod", + "Ca_HVA.mod", + "Ca_LVAst.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "K_Pst.mod", + "K_Tst.mod", + "NaTa_t.mod", + "NaTs2_t.mod", + "Nap_Et2.mod", + "SK_E2.mod", + "SKv3_1.mod" + ], + "mechanisms_sha256": "f6470b942dc1bbf8ce20e5c561077bfacb294749494f4137c09634f1d283721f", + "morphology_sha256": "a8afc0925afec1dd9241528ee6ccfdcb1c321904d876835990592c2573567383", + "neuron_version": "9.0.2", + "nseg_policy": "d_lambda", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "hay", + "template_hoc_sha256": "c8c603bf3a9d1f595841b98fdb455d24301d0c4f6edbfc5f3ad67fa6b834f7fb", + "v_init_mv": -76.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every source site is connected: each basal/apical source site is placed on the target segment of the same compartment type nearest in normalized arclength, so several sites can share a segment.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 999, + "mean": 999.0, + "min": 999 + }, + "n_traces": 2, + "policy": "all_sites_by_type_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "neuronio_hay_cell1", + "morphology_path": "${AXOBENCH_SOURCE_ROOT}/morphologies/cell1.asc", + "samples": 2, + "shard_index": 847, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00847.npz b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00847.npz new file mode 100644 index 0000000000000000000000000000000000000000..4504ea8ec4dbd7a36595913bc510d2637bdeea8e --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00847.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:953705bfb3c1e042ad8aba4cd5f756531dfefab8daa23223136a40e673114615 +size 1436756 diff --git a/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00848.json b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00848.json new file mode 100644 index 0000000000000000000000000000000000000000..c3344e19c531c0d1ecf9dd1feab6a6435c15100b --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00848.json @@ -0,0 +1,96 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 291.9893976179992, + "exc_gmax_scale": 1.0, + "generator": { + "backend": "neuron", + "biophysics_hoc_sha256": "dec2a62342faaeeca6436110472f9485e069a434ef993649c6f2820c56cc28f3", + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 1.0, + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "mechanism_files": [ + "CaDynamics_E2.mod", + "Ca_HVA.mod", + "Ca_LVAst.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "K_Pst.mod", + "K_Tst.mod", + "NaTa_t.mod", + "NaTs2_t.mod", + "Nap_Et2.mod", + "SK_E2.mod", + "SKv3_1.mod" + ], + "mechanisms_sha256": "f6470b942dc1bbf8ce20e5c561077bfacb294749494f4137c09634f1d283721f", + "morphology_sha256": "a8afc0925afec1dd9241528ee6ccfdcb1c321904d876835990592c2573567383", + "neuron_version": "9.0.2", + "nseg_policy": "d_lambda", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "hay", + "template_hoc_sha256": "c8c603bf3a9d1f595841b98fdb455d24301d0c4f6edbfc5f3ad67fa6b834f7fb", + "v_init_mv": -76.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every source site is connected: each basal/apical source site is placed on the target segment of the same compartment type nearest in normalized arclength, so several sites can share a segment.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 999, + "mean": 999.0, + "min": 999 + }, + "n_traces": 2, + "policy": "all_sites_by_type_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "neuronio_hay_cell1", + "morphology_path": "${AXOBENCH_SOURCE_ROOT}/morphologies/cell1.asc", + "samples": 2, + "shard_index": 848, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00848.npz b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00848.npz new file mode 100644 index 0000000000000000000000000000000000000000..cadc27635eebfcb095f7482101ef20ce9d32f75c --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00848.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ebee6f436f68ea7cb1701af7b3eacd69d384836c0e377bb586736d3ec987c6a4 +size 1440200 diff --git a/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00849.json b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00849.json new file mode 100644 index 0000000000000000000000000000000000000000..393f88b51f46be019c957f21bcfd58cec559ec9d --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00849.json @@ -0,0 +1,96 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 296.90643840900157, + "exc_gmax_scale": 1.0, + "generator": { + "backend": "neuron", + "biophysics_hoc_sha256": "dec2a62342faaeeca6436110472f9485e069a434ef993649c6f2820c56cc28f3", + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 1.0, + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "mechanism_files": [ + "CaDynamics_E2.mod", + "Ca_HVA.mod", + "Ca_LVAst.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "K_Pst.mod", + "K_Tst.mod", + "NaTa_t.mod", + "NaTs2_t.mod", + "Nap_Et2.mod", + "SK_E2.mod", + "SKv3_1.mod" + ], + "mechanisms_sha256": "f6470b942dc1bbf8ce20e5c561077bfacb294749494f4137c09634f1d283721f", + "morphology_sha256": "a8afc0925afec1dd9241528ee6ccfdcb1c321904d876835990592c2573567383", + "neuron_version": "9.0.2", + "nseg_policy": "d_lambda", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "hay", + "template_hoc_sha256": "c8c603bf3a9d1f595841b98fdb455d24301d0c4f6edbfc5f3ad67fa6b834f7fb", + "v_init_mv": -76.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every source site is connected: each basal/apical source site is placed on the target segment of the same compartment type nearest in normalized arclength, so several sites can share a segment.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 999, + "mean": 999.0, + "min": 999 + }, + "n_traces": 2, + "policy": "all_sites_by_type_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "neuronio_hay_cell1", + "morphology_path": "${AXOBENCH_SOURCE_ROOT}/morphologies/cell1.asc", + "samples": 2, + "shard_index": 849, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00849.npz b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00849.npz new file mode 100644 index 0000000000000000000000000000000000000000..0184da94873e0ff0dd57e897e79689bb34cdf08d --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00849.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:81e07d185cdf134954416c5a34bb18ad355c34c4cf1d9a96c98aea9f9d8d4c78 +size 1442163 diff --git a/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00850.json b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00850.json new file mode 100644 index 0000000000000000000000000000000000000000..2e61cf98b025ab2e537ce3fed7177ccec27e00b5 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00850.json @@ -0,0 +1,96 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 297.20990188699943, + "exc_gmax_scale": 1.0, + "generator": { + "backend": "neuron", + "biophysics_hoc_sha256": "dec2a62342faaeeca6436110472f9485e069a434ef993649c6f2820c56cc28f3", + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 1.0, + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "mechanism_files": [ + "CaDynamics_E2.mod", + "Ca_HVA.mod", + "Ca_LVAst.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "K_Pst.mod", + "K_Tst.mod", + "NaTa_t.mod", + "NaTs2_t.mod", + "Nap_Et2.mod", + "SK_E2.mod", + "SKv3_1.mod" + ], + "mechanisms_sha256": "f6470b942dc1bbf8ce20e5c561077bfacb294749494f4137c09634f1d283721f", + "morphology_sha256": "a8afc0925afec1dd9241528ee6ccfdcb1c321904d876835990592c2573567383", + "neuron_version": "9.0.2", + "nseg_policy": "d_lambda", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "hay", + "template_hoc_sha256": "c8c603bf3a9d1f595841b98fdb455d24301d0c4f6edbfc5f3ad67fa6b834f7fb", + "v_init_mv": -76.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every source site is connected: each basal/apical source site is placed on the target segment of the same compartment type nearest in normalized arclength, so several sites can share a segment.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 999, + "mean": 999.0, + "min": 999 + }, + "n_traces": 2, + "policy": "all_sites_by_type_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "neuronio_hay_cell1", + "morphology_path": "${AXOBENCH_SOURCE_ROOT}/morphologies/cell1.asc", + "samples": 2, + "shard_index": 850, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00850.npz b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00850.npz new file mode 100644 index 0000000000000000000000000000000000000000..dffe31ba4dd88a1f45ace8ca8f9548a2d1ef85b8 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00850.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:47990541787ee1f7b5eb3db90913ab794269a49a2f11269ae4a3219f43ddc8f1 +size 1440256 diff --git a/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00851.json b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00851.json new file mode 100644 index 0000000000000000000000000000000000000000..f16a27946a72a69ea4d6edee96f8b30ca2d801b3 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00851.json @@ -0,0 +1,96 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 295.819563123001, + "exc_gmax_scale": 1.0, + "generator": { + "backend": "neuron", + "biophysics_hoc_sha256": "dec2a62342faaeeca6436110472f9485e069a434ef993649c6f2820c56cc28f3", + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 1.0, + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "mechanism_files": [ + "CaDynamics_E2.mod", + "Ca_HVA.mod", + "Ca_LVAst.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "K_Pst.mod", + "K_Tst.mod", + "NaTa_t.mod", + "NaTs2_t.mod", + "Nap_Et2.mod", + "SK_E2.mod", + "SKv3_1.mod" + ], + "mechanisms_sha256": "f6470b942dc1bbf8ce20e5c561077bfacb294749494f4137c09634f1d283721f", + "morphology_sha256": "a8afc0925afec1dd9241528ee6ccfdcb1c321904d876835990592c2573567383", + "neuron_version": "9.0.2", + "nseg_policy": "d_lambda", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "hay", + "template_hoc_sha256": "c8c603bf3a9d1f595841b98fdb455d24301d0c4f6edbfc5f3ad67fa6b834f7fb", + "v_init_mv": -76.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every source site is connected: each basal/apical source site is placed on the target segment of the same compartment type nearest in normalized arclength, so several sites can share a segment.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 999, + "mean": 999.0, + "min": 999 + }, + "n_traces": 2, + "policy": "all_sites_by_type_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "neuronio_hay_cell1", + "morphology_path": "${AXOBENCH_SOURCE_ROOT}/morphologies/cell1.asc", + "samples": 2, + "shard_index": 851, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00851.npz b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00851.npz new file mode 100644 index 0000000000000000000000000000000000000000..1f516a49076772eb310fea228ee52df7e0a31081 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00851.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d9e79a1c951fc01e2a8b55d10c0b4543262b2fe971296f9aac2770b275403675 +size 1451090 diff --git a/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00852.json b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00852.json new file mode 100644 index 0000000000000000000000000000000000000000..64d1bf9876db5abf433eb7b600a6db2232202ab6 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00852.json @@ -0,0 +1,96 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 295.6823936209985, + "exc_gmax_scale": 1.0, + "generator": { + "backend": "neuron", + "biophysics_hoc_sha256": "dec2a62342faaeeca6436110472f9485e069a434ef993649c6f2820c56cc28f3", + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 1.0, + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "mechanism_files": [ + "CaDynamics_E2.mod", + "Ca_HVA.mod", + "Ca_LVAst.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "K_Pst.mod", + "K_Tst.mod", + "NaTa_t.mod", + "NaTs2_t.mod", + "Nap_Et2.mod", + "SK_E2.mod", + "SKv3_1.mod" + ], + "mechanisms_sha256": "f6470b942dc1bbf8ce20e5c561077bfacb294749494f4137c09634f1d283721f", + "morphology_sha256": "a8afc0925afec1dd9241528ee6ccfdcb1c321904d876835990592c2573567383", + "neuron_version": "9.0.2", + "nseg_policy": "d_lambda", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "hay", + "template_hoc_sha256": "c8c603bf3a9d1f595841b98fdb455d24301d0c4f6edbfc5f3ad67fa6b834f7fb", + "v_init_mv": -76.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every source site is connected: each basal/apical source site is placed on the target segment of the same compartment type nearest in normalized arclength, so several sites can share a segment.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 999, + "mean": 999.0, + "min": 999 + }, + "n_traces": 2, + "policy": "all_sites_by_type_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "neuronio_hay_cell1", + "morphology_path": "${AXOBENCH_SOURCE_ROOT}/morphologies/cell1.asc", + "samples": 2, + "shard_index": 852, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00852.npz b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00852.npz new file mode 100644 index 0000000000000000000000000000000000000000..c9ab55ee6cde6504f40808eba1f10759be7bde08 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00852.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:845c8277188e0377b6245c5d5c3acdd849ec7e4192c324265c6f2cc2d9ffefdf +size 1374196 diff --git a/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00853.json b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00853.json new file mode 100644 index 0000000000000000000000000000000000000000..4b027a9c354609602805e75409360451c880589b --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00853.json @@ -0,0 +1,96 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 293.8444811629997, + "exc_gmax_scale": 1.0, + "generator": { + "backend": "neuron", + "biophysics_hoc_sha256": "dec2a62342faaeeca6436110472f9485e069a434ef993649c6f2820c56cc28f3", + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 1.0, + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "mechanism_files": [ + "CaDynamics_E2.mod", + "Ca_HVA.mod", + "Ca_LVAst.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "K_Pst.mod", + "K_Tst.mod", + "NaTa_t.mod", + "NaTs2_t.mod", + "Nap_Et2.mod", + "SK_E2.mod", + "SKv3_1.mod" + ], + "mechanisms_sha256": "f6470b942dc1bbf8ce20e5c561077bfacb294749494f4137c09634f1d283721f", + "morphology_sha256": "a8afc0925afec1dd9241528ee6ccfdcb1c321904d876835990592c2573567383", + "neuron_version": "9.0.2", + "nseg_policy": "d_lambda", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "hay", + "template_hoc_sha256": "c8c603bf3a9d1f595841b98fdb455d24301d0c4f6edbfc5f3ad67fa6b834f7fb", + "v_init_mv": -76.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every source site is connected: each basal/apical source site is placed on the target segment of the same compartment type nearest in normalized arclength, so several sites can share a segment.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 999, + "mean": 999.0, + "min": 999 + }, + "n_traces": 2, + "policy": "all_sites_by_type_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "neuronio_hay_cell1", + "morphology_path": "${AXOBENCH_SOURCE_ROOT}/morphologies/cell1.asc", + "samples": 2, + "shard_index": 853, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00853.npz b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00853.npz new file mode 100644 index 0000000000000000000000000000000000000000..afc0ba8cfee96366838eaa886df03be37820c498 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00853.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d35f7d59711a80cb076dd16a22d09d8b6924e8e29051f52b1190f1f6c171dc22 +size 1423594 diff --git a/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00854.json b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00854.json new file mode 100644 index 0000000000000000000000000000000000000000..431ca00cdfbdb4773fef73c749928b5f4f1f8b3a --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00854.json @@ -0,0 +1,96 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 294.4614808389997, + "exc_gmax_scale": 1.0, + "generator": { + "backend": "neuron", + "biophysics_hoc_sha256": "dec2a62342faaeeca6436110472f9485e069a434ef993649c6f2820c56cc28f3", + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 1.0, + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "mechanism_files": [ + "CaDynamics_E2.mod", + "Ca_HVA.mod", + "Ca_LVAst.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "K_Pst.mod", + "K_Tst.mod", + "NaTa_t.mod", + "NaTs2_t.mod", + "Nap_Et2.mod", + "SK_E2.mod", + "SKv3_1.mod" + ], + "mechanisms_sha256": "f6470b942dc1bbf8ce20e5c561077bfacb294749494f4137c09634f1d283721f", + "morphology_sha256": "a8afc0925afec1dd9241528ee6ccfdcb1c321904d876835990592c2573567383", + "neuron_version": "9.0.2", + "nseg_policy": "d_lambda", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "hay", + "template_hoc_sha256": "c8c603bf3a9d1f595841b98fdb455d24301d0c4f6edbfc5f3ad67fa6b834f7fb", + "v_init_mv": -76.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every source site is connected: each basal/apical source site is placed on the target segment of the same compartment type nearest in normalized arclength, so several sites can share a segment.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 999, + "mean": 999.0, + "min": 999 + }, + "n_traces": 2, + "policy": "all_sites_by_type_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "neuronio_hay_cell1", + "morphology_path": "${AXOBENCH_SOURCE_ROOT}/morphologies/cell1.asc", + "samples": 2, + "shard_index": 854, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00854.npz b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00854.npz new file mode 100644 index 0000000000000000000000000000000000000000..51d30d663369e63adaf45ba04184d8d286a758b7 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00854.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:48b1dc94dba8b46913ae6607cc8ea19de48715412a570b10ec6d621e2f27b7e7 +size 1402045 diff --git a/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00855.json b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00855.json new file mode 100644 index 0000000000000000000000000000000000000000..b7425244e5d3f8d9f6609b0eeed316a389ad2853 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00855.json @@ -0,0 +1,96 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 295.07142116299656, + "exc_gmax_scale": 1.0, + "generator": { + "backend": "neuron", + "biophysics_hoc_sha256": "dec2a62342faaeeca6436110472f9485e069a434ef993649c6f2820c56cc28f3", + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 1.0, + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "mechanism_files": [ + "CaDynamics_E2.mod", + "Ca_HVA.mod", + "Ca_LVAst.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "K_Pst.mod", + "K_Tst.mod", + "NaTa_t.mod", + "NaTs2_t.mod", + "Nap_Et2.mod", + "SK_E2.mod", + "SKv3_1.mod" + ], + "mechanisms_sha256": "f6470b942dc1bbf8ce20e5c561077bfacb294749494f4137c09634f1d283721f", + "morphology_sha256": "a8afc0925afec1dd9241528ee6ccfdcb1c321904d876835990592c2573567383", + "neuron_version": "9.0.2", + "nseg_policy": "d_lambda", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "hay", + "template_hoc_sha256": "c8c603bf3a9d1f595841b98fdb455d24301d0c4f6edbfc5f3ad67fa6b834f7fb", + "v_init_mv": -76.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every source site is connected: each basal/apical source site is placed on the target segment of the same compartment type nearest in normalized arclength, so several sites can share a segment.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 999, + "mean": 999.0, + "min": 999 + }, + "n_traces": 2, + "policy": "all_sites_by_type_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "neuronio_hay_cell1", + "morphology_path": "${AXOBENCH_SOURCE_ROOT}/morphologies/cell1.asc", + "samples": 2, + "shard_index": 855, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00855.npz b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00855.npz new file mode 100644 index 0000000000000000000000000000000000000000..c322af98d43cd6a307127c0d337be64f03468e63 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00855.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:21f1de77c556f7ea8a19582ed74b6cdcef903ae7ec6ee7c9b46101b65b38e0df +size 1390349 diff --git a/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00856.json b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00856.json new file mode 100644 index 0000000000000000000000000000000000000000..4729a6bb5fcb7c46b282b3d8bd4c51a73c9fa9c3 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00856.json @@ -0,0 +1,96 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 295.9134110339983, + "exc_gmax_scale": 1.0, + "generator": { + "backend": "neuron", + "biophysics_hoc_sha256": "dec2a62342faaeeca6436110472f9485e069a434ef993649c6f2820c56cc28f3", + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 1.0, + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "mechanism_files": [ + "CaDynamics_E2.mod", + "Ca_HVA.mod", + "Ca_LVAst.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "K_Pst.mod", + "K_Tst.mod", + "NaTa_t.mod", + "NaTs2_t.mod", + "Nap_Et2.mod", + "SK_E2.mod", + "SKv3_1.mod" + ], + "mechanisms_sha256": "f6470b942dc1bbf8ce20e5c561077bfacb294749494f4137c09634f1d283721f", + "morphology_sha256": "a8afc0925afec1dd9241528ee6ccfdcb1c321904d876835990592c2573567383", + "neuron_version": "9.0.2", + "nseg_policy": "d_lambda", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "hay", + "template_hoc_sha256": "c8c603bf3a9d1f595841b98fdb455d24301d0c4f6edbfc5f3ad67fa6b834f7fb", + "v_init_mv": -76.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every source site is connected: each basal/apical source site is placed on the target segment of the same compartment type nearest in normalized arclength, so several sites can share a segment.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 999, + "mean": 999.0, + "min": 999 + }, + "n_traces": 2, + "policy": "all_sites_by_type_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "neuronio_hay_cell1", + "morphology_path": "${AXOBENCH_SOURCE_ROOT}/morphologies/cell1.asc", + "samples": 2, + "shard_index": 856, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00856.npz b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00856.npz new file mode 100644 index 0000000000000000000000000000000000000000..68ea05ee231e8555fb619485f8c6bee453ccd12e --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00856.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:085e42b320b140a92d6df4e9da83530235d16d8ce71e16524afcd96acf7f076b +size 1413675 diff --git a/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00857.json b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00857.json new file mode 100644 index 0000000000000000000000000000000000000000..1bac1b1d7932d7b292629ba8d97c99b003e96396 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00857.json @@ -0,0 +1,96 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 295.6014686359995, + "exc_gmax_scale": 1.0, + "generator": { + "backend": "neuron", + "biophysics_hoc_sha256": "dec2a62342faaeeca6436110472f9485e069a434ef993649c6f2820c56cc28f3", + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 1.0, + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "mechanism_files": [ + "CaDynamics_E2.mod", + "Ca_HVA.mod", + "Ca_LVAst.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "K_Pst.mod", + "K_Tst.mod", + "NaTa_t.mod", + "NaTs2_t.mod", + "Nap_Et2.mod", + "SK_E2.mod", + "SKv3_1.mod" + ], + "mechanisms_sha256": "f6470b942dc1bbf8ce20e5c561077bfacb294749494f4137c09634f1d283721f", + "morphology_sha256": "a8afc0925afec1dd9241528ee6ccfdcb1c321904d876835990592c2573567383", + "neuron_version": "9.0.2", + "nseg_policy": "d_lambda", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "hay", + "template_hoc_sha256": "c8c603bf3a9d1f595841b98fdb455d24301d0c4f6edbfc5f3ad67fa6b834f7fb", + "v_init_mv": -76.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every source site is connected: each basal/apical source site is placed on the target segment of the same compartment type nearest in normalized arclength, so several sites can share a segment.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 999, + "mean": 999.0, + "min": 999 + }, + "n_traces": 2, + "policy": "all_sites_by_type_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "neuronio_hay_cell1", + "morphology_path": "${AXOBENCH_SOURCE_ROOT}/morphologies/cell1.asc", + "samples": 2, + "shard_index": 857, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00857.npz b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00857.npz new file mode 100644 index 0000000000000000000000000000000000000000..9d09a1600cf173037bf66057ad0b446b65f273bd --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/neuronio_hay_cell1_intervention_pair_00857.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9699c67154d06c101fa4d3bd28bb8dc017260165067741291742799fb6f3d385 +size 1443995 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04107.json b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04107.json new file mode 100644 index 0000000000000000000000000000000000000000..04be3c616e3b1d71b23d4f8a23654f39b6005376 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04107.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 331.4305860309978, + "exc_gmax_scale": 0.859309649061239, + "generator": { + "allen_model_id": 497229124, + "allen_specimen_id": 314822529, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.859309649061239, + "fit_parameters_sha256": "a8a5f14280f3a6bc1c614e972169f8068f6c8111701eb2cb42795bce9f09672e", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "4c5f25ba8928cf0a742b375828b1b1c171cf1cacc96755099e9df5210277cb13", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 220, + "mean": 220.0, + "min": 220 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_314822529", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_314822529/model", + "samples": 2, + "shard_index": 4107, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04107.npz b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04107.npz new file mode 100644 index 0000000000000000000000000000000000000000..dcb215ad17249c57aa8f6f185f3af32454bd3f4e --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04107.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:55bb5d89b0396612d1d693cc5c3176bb37eb0080d7574f8fa8706309ff4cc7ee +size 1414257 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04108.json b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04108.json new file mode 100644 index 0000000000000000000000000000000000000000..f77e1b9c7eb85364ed69f435bdabe46a641bd1a2 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04108.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 332.92343477100076, + "exc_gmax_scale": 0.859309649061239, + "generator": { + "allen_model_id": 497229124, + "allen_specimen_id": 314822529, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.859309649061239, + "fit_parameters_sha256": "a8a5f14280f3a6bc1c614e972169f8068f6c8111701eb2cb42795bce9f09672e", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "4c5f25ba8928cf0a742b375828b1b1c171cf1cacc96755099e9df5210277cb13", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 220, + "mean": 220.0, + "min": 220 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_314822529", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_314822529/model", + "samples": 2, + "shard_index": 4108, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04108.npz b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04108.npz new file mode 100644 index 0000000000000000000000000000000000000000..1c2071f5cb98fe5a98d7551cd0491d7c998943b8 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04108.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:032bcf7504ff4a2be820e874cd36158efe044dc052cb6fb2c6e7eb874348cd2a +size 1391574 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04109.json b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04109.json new file mode 100644 index 0000000000000000000000000000000000000000..1543d29e931c596439857982c42edcbf209a4848 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04109.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 330.3839124980004, + "exc_gmax_scale": 0.859309649061239, + "generator": { + "allen_model_id": 497229124, + "allen_specimen_id": 314822529, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.859309649061239, + "fit_parameters_sha256": "a8a5f14280f3a6bc1c614e972169f8068f6c8111701eb2cb42795bce9f09672e", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "4c5f25ba8928cf0a742b375828b1b1c171cf1cacc96755099e9df5210277cb13", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 220, + "mean": 220.0, + "min": 220 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_314822529", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_314822529/model", + "samples": 2, + "shard_index": 4109, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04109.npz b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04109.npz new file mode 100644 index 0000000000000000000000000000000000000000..e4a3a7beceb33f227d35e4b546d520a2b902193a --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04109.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:76fcfa81024cc133b150e86f0ae2c1ad774e6fe0f0aefd714ec01a268300704f +size 1437824 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04110.json b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04110.json new file mode 100644 index 0000000000000000000000000000000000000000..c3d46febeacbc21b2b4a883bdee858e9d20e5577 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04110.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 334.0114363139983, + "exc_gmax_scale": 0.859309649061239, + "generator": { + "allen_model_id": 497229124, + "allen_specimen_id": 314822529, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.859309649061239, + "fit_parameters_sha256": "a8a5f14280f3a6bc1c614e972169f8068f6c8111701eb2cb42795bce9f09672e", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "4c5f25ba8928cf0a742b375828b1b1c171cf1cacc96755099e9df5210277cb13", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 220, + "mean": 220.0, + "min": 220 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_314822529", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_314822529/model", + "samples": 2, + "shard_index": 4110, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04110.npz b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04110.npz new file mode 100644 index 0000000000000000000000000000000000000000..b2499add229413e14bdb1d3c353fc0e226833eed --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04110.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8866556d1be5eff5ea1cf4e5ccddc1c6f4a61c6ef50d0be4d5c4066ac1aa0238 +size 1317433 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04111.json b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04111.json new file mode 100644 index 0000000000000000000000000000000000000000..17e4fdc5620d7072c6b2f9c1b50cc75847a6711b --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04111.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 338.38665503599987, + "exc_gmax_scale": 0.859309649061239, + "generator": { + "allen_model_id": 497229124, + "allen_specimen_id": 314822529, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.859309649061239, + "fit_parameters_sha256": "a8a5f14280f3a6bc1c614e972169f8068f6c8111701eb2cb42795bce9f09672e", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "4c5f25ba8928cf0a742b375828b1b1c171cf1cacc96755099e9df5210277cb13", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 220, + "mean": 220.0, + "min": 220 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_314822529", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_314822529/model", + "samples": 2, + "shard_index": 4111, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04111.npz b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04111.npz new file mode 100644 index 0000000000000000000000000000000000000000..c30e24041770dc307d1941ee74a48dbc8ba0f61d --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04111.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:43e29eb6fa8bb8b74778148e8da93506bf7f3a882ff5d9a759b38299958e6b2c +size 1426463 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04112.json b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04112.json new file mode 100644 index 0000000000000000000000000000000000000000..28aeb078d347aae7d21f684033cf7af6440e48a3 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04112.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 331.8762173649993, + "exc_gmax_scale": 0.859309649061239, + "generator": { + "allen_model_id": 497229124, + "allen_specimen_id": 314822529, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.859309649061239, + "fit_parameters_sha256": "a8a5f14280f3a6bc1c614e972169f8068f6c8111701eb2cb42795bce9f09672e", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "4c5f25ba8928cf0a742b375828b1b1c171cf1cacc96755099e9df5210277cb13", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 220, + "mean": 220.0, + "min": 220 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_314822529", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_314822529/model", + "samples": 2, + "shard_index": 4112, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04112.npz b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04112.npz new file mode 100644 index 0000000000000000000000000000000000000000..e6fedc85ce0db5678b9c95ad42df64ce4565d828 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04112.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:df6b728c1c46599e5080b1dcd9e746f4c2ffcb3c6cc049d705ab13f975f3a4d9 +size 1423479 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04113.json b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04113.json new file mode 100644 index 0000000000000000000000000000000000000000..de41d9cac9970e02d2ea8bb9f030223b41a294f4 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04113.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 335.29276158799985, + "exc_gmax_scale": 0.859309649061239, + "generator": { + "allen_model_id": 497229124, + "allen_specimen_id": 314822529, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.859309649061239, + "fit_parameters_sha256": "a8a5f14280f3a6bc1c614e972169f8068f6c8111701eb2cb42795bce9f09672e", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "4c5f25ba8928cf0a742b375828b1b1c171cf1cacc96755099e9df5210277cb13", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 220, + "mean": 220.0, + "min": 220 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_314822529", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_314822529/model", + "samples": 2, + "shard_index": 4113, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04113.npz b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04113.npz new file mode 100644 index 0000000000000000000000000000000000000000..82834d25d79dcd5b5a3e2c44a8b0769dbb36057b --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04113.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:bd5dcde4d52694a22ffddc8e035cef4544ef1b8ced423a5ad84bb60dcf36c734 +size 1432468 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04114.json b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04114.json new file mode 100644 index 0000000000000000000000000000000000000000..c745c24e4b7e36c1e2e2f0ad5d57571a3494dc2c --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04114.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 334.06450175400096, + "exc_gmax_scale": 0.859309649061239, + "generator": { + "allen_model_id": 497229124, + "allen_specimen_id": 314822529, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.859309649061239, + "fit_parameters_sha256": "a8a5f14280f3a6bc1c614e972169f8068f6c8111701eb2cb42795bce9f09672e", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "4c5f25ba8928cf0a742b375828b1b1c171cf1cacc96755099e9df5210277cb13", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 220, + "mean": 220.0, + "min": 220 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_314822529", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_314822529/model", + "samples": 2, + "shard_index": 4114, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04114.npz b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04114.npz new file mode 100644 index 0000000000000000000000000000000000000000..06a919f40042cb333d0f46c6fe93956331c56965 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04114.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:3a3928c0c361e8c736f0b18adf5129adc6666ba7c26105507a5edb99aa038cb0 +size 1360116 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04115.json b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04115.json new file mode 100644 index 0000000000000000000000000000000000000000..07e0a8cac6aebf2d2d9081ad181262d294424940 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04115.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 336.2975073159978, + "exc_gmax_scale": 0.859309649061239, + "generator": { + "allen_model_id": 497229124, + "allen_specimen_id": 314822529, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.859309649061239, + "fit_parameters_sha256": "a8a5f14280f3a6bc1c614e972169f8068f6c8111701eb2cb42795bce9f09672e", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "4c5f25ba8928cf0a742b375828b1b1c171cf1cacc96755099e9df5210277cb13", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 220, + "mean": 220.0, + "min": 220 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_314822529", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_314822529/model", + "samples": 2, + "shard_index": 4115, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04115.npz b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04115.npz new file mode 100644 index 0000000000000000000000000000000000000000..09b4ece0cc2b2cea49aef1d1722c69689a5aeadf --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04115.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9623cba26281d20d311e7bbf098be336e861c92e50acec3e08350b7da80943a8 +size 1402939 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04116.json b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04116.json new file mode 100644 index 0000000000000000000000000000000000000000..87daf22093b9700476f0251c6c2be655789823c8 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04116.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 339.2839962830003, + "exc_gmax_scale": 0.859309649061239, + "generator": { + "allen_model_id": 497229124, + "allen_specimen_id": 314822529, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.859309649061239, + "fit_parameters_sha256": "a8a5f14280f3a6bc1c614e972169f8068f6c8111701eb2cb42795bce9f09672e", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "4c5f25ba8928cf0a742b375828b1b1c171cf1cacc96755099e9df5210277cb13", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 220, + "mean": 220.0, + "min": 220 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_314822529", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_314822529/model", + "samples": 2, + "shard_index": 4116, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04116.npz b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04116.npz new file mode 100644 index 0000000000000000000000000000000000000000..4a87530fa02363392e5427351ab2011d09bd79fa --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04116.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b5d82fa576d5d1b467e3c99c2fb66803f19fdb1cd0202832d7ade052b604b0f8 +size 1376117 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04117.json b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04117.json new file mode 100644 index 0000000000000000000000000000000000000000..b061ad690699d42b2a0f9dfc763803b5a777f3e9 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04117.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 334.6154535149981, + "exc_gmax_scale": 0.859309649061239, + "generator": { + "allen_model_id": 497229124, + "allen_specimen_id": 314822529, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.859309649061239, + "fit_parameters_sha256": "a8a5f14280f3a6bc1c614e972169f8068f6c8111701eb2cb42795bce9f09672e", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "4c5f25ba8928cf0a742b375828b1b1c171cf1cacc96755099e9df5210277cb13", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 220, + "mean": 220.0, + "min": 220 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_314822529", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_314822529/model", + "samples": 2, + "shard_index": 4117, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04117.npz b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04117.npz new file mode 100644 index 0000000000000000000000000000000000000000..2f9eeb60cf3884611131c6ae2ccec7a12f89f685 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04117.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:00b506725a69dd593c24f97995e7ffa998454dd7984df3e52edea9709c372cfe +size 1460501 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04118.json b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04118.json new file mode 100644 index 0000000000000000000000000000000000000000..f73dee7b454f18540ad9ff6b1d931e812b1c1830 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04118.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 334.8591212069987, + "exc_gmax_scale": 0.859309649061239, + "generator": { + "allen_model_id": 497229124, + "allen_specimen_id": 314822529, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.859309649061239, + "fit_parameters_sha256": "a8a5f14280f3a6bc1c614e972169f8068f6c8111701eb2cb42795bce9f09672e", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "4c5f25ba8928cf0a742b375828b1b1c171cf1cacc96755099e9df5210277cb13", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 220, + "mean": 220.0, + "min": 220 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_314822529", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_314822529/model", + "samples": 2, + "shard_index": 4118, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04118.npz b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04118.npz new file mode 100644 index 0000000000000000000000000000000000000000..b47c38b225111504e2e462e9efb181878036e639 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04118.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:56198804a9359cb792878948919aee769a376d98cea8d73513a9c4929bd0e7c5 +size 1430292 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04119.json b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04119.json new file mode 100644 index 0000000000000000000000000000000000000000..da710feb946c2a9118d6406b496b14fda47701ed --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04119.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 333.2131106730012, + "exc_gmax_scale": 0.859309649061239, + "generator": { + "allen_model_id": 497229124, + "allen_specimen_id": 314822529, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.859309649061239, + "fit_parameters_sha256": "a8a5f14280f3a6bc1c614e972169f8068f6c8111701eb2cb42795bce9f09672e", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "4c5f25ba8928cf0a742b375828b1b1c171cf1cacc96755099e9df5210277cb13", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 220, + "mean": 220.0, + "min": 220 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_314822529", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_314822529/model", + "samples": 2, + "shard_index": 4119, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04119.npz b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04119.npz new file mode 100644 index 0000000000000000000000000000000000000000..3eb9d9d61093bb9878390567df36044fed21ee39 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04119.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c23d7186224846884da2238fe16df76796d0d1c49429716f4913bd1689ae531f +size 1438257 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04120.json b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04120.json new file mode 100644 index 0000000000000000000000000000000000000000..a7281f66c9770d4ea9ffc53d5306c13d8a983363 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04120.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 335.8691918170007, + "exc_gmax_scale": 0.859309649061239, + "generator": { + "allen_model_id": 497229124, + "allen_specimen_id": 314822529, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.859309649061239, + "fit_parameters_sha256": "a8a5f14280f3a6bc1c614e972169f8068f6c8111701eb2cb42795bce9f09672e", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "4c5f25ba8928cf0a742b375828b1b1c171cf1cacc96755099e9df5210277cb13", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 220, + "mean": 220.0, + "min": 220 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_314822529", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_314822529/model", + "samples": 2, + "shard_index": 4120, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04120.npz b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04120.npz new file mode 100644 index 0000000000000000000000000000000000000000..56582d1482717701e7fa1663a493ad03c3b8549d --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04120.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7cb24bcf465afa2f35e639fbec81e2dcb256c969709abf1912da34935451cc89 +size 1435023 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04121.json b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04121.json new file mode 100644 index 0000000000000000000000000000000000000000..519196494e425eb81d2413ad3b8dee3e09e4a088 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04121.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 335.1437738280001, + "exc_gmax_scale": 0.859309649061239, + "generator": { + "allen_model_id": 497229124, + "allen_specimen_id": 314822529, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.859309649061239, + "fit_parameters_sha256": "a8a5f14280f3a6bc1c614e972169f8068f6c8111701eb2cb42795bce9f09672e", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "4c5f25ba8928cf0a742b375828b1b1c171cf1cacc96755099e9df5210277cb13", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 220, + "mean": 220.0, + "min": 220 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_314822529", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_314822529/model", + "samples": 2, + "shard_index": 4121, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04121.npz b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04121.npz new file mode 100644 index 0000000000000000000000000000000000000000..2d46fac064d6de9359d7f71fd54bd6e3135c6cac --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04121.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1fc75d15c821b634dbac22bcb5604f3c0e8dfe70dfa38fa3902d30c3b046f751 +size 1434126 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04122.json b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04122.json new file mode 100644 index 0000000000000000000000000000000000000000..3f5802b1abffd2511c40de20ca58e0ed71ab29ec --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04122.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 335.7407652410002, + "exc_gmax_scale": 0.859309649061239, + "generator": { + "allen_model_id": 497229124, + "allen_specimen_id": 314822529, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.859309649061239, + "fit_parameters_sha256": "a8a5f14280f3a6bc1c614e972169f8068f6c8111701eb2cb42795bce9f09672e", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "4c5f25ba8928cf0a742b375828b1b1c171cf1cacc96755099e9df5210277cb13", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 220, + "mean": 220.0, + "min": 220 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_314822529", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_314822529/model", + "samples": 2, + "shard_index": 4122, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04122.npz b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04122.npz new file mode 100644 index 0000000000000000000000000000000000000000..925663b2f8967f9f6180274101903a440d1e1801 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04122.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:6579aa8eb82a192e6a5e1dc1c9b2e2e946257abb4c7d051fc28e3978f268beb3 +size 1421122 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04123.json b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04123.json new file mode 100644 index 0000000000000000000000000000000000000000..1b303098688a9e0fb8f5320df1a9193b55f3776b --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04123.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 338.93502163299854, + "exc_gmax_scale": 0.859309649061239, + "generator": { + "allen_model_id": 497229124, + "allen_specimen_id": 314822529, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.859309649061239, + "fit_parameters_sha256": "a8a5f14280f3a6bc1c614e972169f8068f6c8111701eb2cb42795bce9f09672e", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "4c5f25ba8928cf0a742b375828b1b1c171cf1cacc96755099e9df5210277cb13", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 220, + "mean": 220.0, + "min": 220 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_314822529", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_314822529/model", + "samples": 2, + "shard_index": 4123, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04123.npz b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04123.npz new file mode 100644 index 0000000000000000000000000000000000000000..a3b273723a7da27c2fd15e5c1ba09cc0937d793a --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04123.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:75aba0a6a8201f47a8f2c1b2861d5323a39cd06c16128713eebde9b1ed778a84 +size 1451025 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04124.json b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04124.json new file mode 100644 index 0000000000000000000000000000000000000000..6428436a777e15813845377f20356c53f3168cd5 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04124.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 337.5916469549993, + "exc_gmax_scale": 0.859309649061239, + "generator": { + "allen_model_id": 497229124, + "allen_specimen_id": 314822529, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.859309649061239, + "fit_parameters_sha256": "a8a5f14280f3a6bc1c614e972169f8068f6c8111701eb2cb42795bce9f09672e", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "4c5f25ba8928cf0a742b375828b1b1c171cf1cacc96755099e9df5210277cb13", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 220, + "mean": 220.0, + "min": 220 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_314822529", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_314822529/model", + "samples": 2, + "shard_index": 4124, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04124.npz b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04124.npz new file mode 100644 index 0000000000000000000000000000000000000000..85d1a0ffc1f44e12b855e1e2755d1a1d25d42a0d --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04124.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:0489d5d1852bb9af749a2f1f591f9bc8d8a0929c3d1ed8257692c985dca003d0 +size 1430836 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04125.json b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04125.json new file mode 100644 index 0000000000000000000000000000000000000000..314c2766e59b53860dcb66b84f57a3989fb513a9 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04125.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 334.031059904999, + "exc_gmax_scale": 0.859309649061239, + "generator": { + "allen_model_id": 497229124, + "allen_specimen_id": 314822529, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.859309649061239, + "fit_parameters_sha256": "a8a5f14280f3a6bc1c614e972169f8068f6c8111701eb2cb42795bce9f09672e", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "4c5f25ba8928cf0a742b375828b1b1c171cf1cacc96755099e9df5210277cb13", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 220, + "mean": 220.0, + "min": 220 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_314822529", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_314822529/model", + "samples": 2, + "shard_index": 4125, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04125.npz b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04125.npz new file mode 100644 index 0000000000000000000000000000000000000000..4bf76da5a095511659d5f1bb5e945b9006e4db9f --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04125.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:cc2e0a6ed842821303825e4c41187fbeef9db45fa2ad9b628209e938c004465a +size 1459379 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04126.json b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04126.json new file mode 100644 index 0000000000000000000000000000000000000000..cc74b9cfb241a68e2dc443fefdb7e66e71a429a5 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04126.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 337.82259506099945, + "exc_gmax_scale": 0.859309649061239, + "generator": { + "allen_model_id": 497229124, + "allen_specimen_id": 314822529, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.859309649061239, + "fit_parameters_sha256": "a8a5f14280f3a6bc1c614e972169f8068f6c8111701eb2cb42795bce9f09672e", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "4c5f25ba8928cf0a742b375828b1b1c171cf1cacc96755099e9df5210277cb13", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 220, + "mean": 220.0, + "min": 220 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_314822529", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_314822529/model", + "samples": 2, + "shard_index": 4126, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04126.npz b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04126.npz new file mode 100644 index 0000000000000000000000000000000000000000..4eb5202b429841b903a2a63123cb76b24ff980b5 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314822529_intervention_pair_04126.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a0f3cc99ffc14e68063843db5c5f846d991addb2857e4f3c857428f3a47e0d6d +size 1437640 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12561.json b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12561.json new file mode 100644 index 0000000000000000000000000000000000000000..eb1f70ec2ccccccd22443874041270e8ba3edc4f --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12561.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 322.36829388299884, + "exc_gmax_scale": 0.2726269331663144, + "generator": { + "allen_model_id": 497229117, + "allen_specimen_id": 314831019, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.2726269331663144, + "fit_parameters_sha256": "512e8becef949dcdf01fb3ee3efad1d7b9f1d5ae024fb3a491b2375ec4a86a4a", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "606d65fe0ec1fa579a5fec4575206d907baab6d84269d7da8359ff723f29361b", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 206, + "mean": 206.0, + "min": 206 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_314831019", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_314831019/model", + "samples": 2, + "shard_index": 12561, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12561.npz b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12561.npz new file mode 100644 index 0000000000000000000000000000000000000000..9fb395a085389db0a2b82d0a5c496aad62146ec1 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12561.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:58747d7a8bfb2fb9621b172a1ecda4c80b079fa5afd30fe88ab69269f439e103 +size 1375165 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12562.json b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12562.json new file mode 100644 index 0000000000000000000000000000000000000000..5a3b746edfba50cc0029aeac9dd39b961f985543 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12562.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 321.347222862998, + "exc_gmax_scale": 0.2726269331663144, + "generator": { + "allen_model_id": 497229117, + "allen_specimen_id": 314831019, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.2726269331663144, + "fit_parameters_sha256": "512e8becef949dcdf01fb3ee3efad1d7b9f1d5ae024fb3a491b2375ec4a86a4a", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "606d65fe0ec1fa579a5fec4575206d907baab6d84269d7da8359ff723f29361b", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 206, + "mean": 206.0, + "min": 206 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_314831019", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_314831019/model", + "samples": 2, + "shard_index": 12562, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12562.npz b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12562.npz new file mode 100644 index 0000000000000000000000000000000000000000..2a16de8869ea41755d0b8d3c75058e456d410736 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12562.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e05802ad85bfc04f9b452fe55c32318413fa0c7c69e512d8cd44def874333bd9 +size 1344123 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12563.json b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12563.json new file mode 100644 index 0000000000000000000000000000000000000000..56b36cb9dfeed92e971c6dba5edaac3b3e358d3a --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12563.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 323.75076693699884, + "exc_gmax_scale": 0.2726269331663144, + "generator": { + "allen_model_id": 497229117, + "allen_specimen_id": 314831019, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.2726269331663144, + "fit_parameters_sha256": "512e8becef949dcdf01fb3ee3efad1d7b9f1d5ae024fb3a491b2375ec4a86a4a", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "606d65fe0ec1fa579a5fec4575206d907baab6d84269d7da8359ff723f29361b", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 206, + "mean": 206.0, + "min": 206 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_314831019", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_314831019/model", + "samples": 2, + "shard_index": 12563, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12563.npz b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12563.npz new file mode 100644 index 0000000000000000000000000000000000000000..0d07cca0950b9879f7110b707e197499915881f6 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12563.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9f571cf170ca7888ad3887a51b02300239894f55ef248be3151db279cc1a56c9 +size 1418929 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12564.json b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12564.json new file mode 100644 index 0000000000000000000000000000000000000000..bc1c81d682b71096eead7a8ce7fb8af5c8097ede --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12564.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 318.40070094600014, + "exc_gmax_scale": 0.2726269331663144, + "generator": { + "allen_model_id": 497229117, + "allen_specimen_id": 314831019, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.2726269331663144, + "fit_parameters_sha256": "512e8becef949dcdf01fb3ee3efad1d7b9f1d5ae024fb3a491b2375ec4a86a4a", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "606d65fe0ec1fa579a5fec4575206d907baab6d84269d7da8359ff723f29361b", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 206, + "mean": 206.0, + "min": 206 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_314831019", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_314831019/model", + "samples": 2, + "shard_index": 12564, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12564.npz b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12564.npz new file mode 100644 index 0000000000000000000000000000000000000000..ca1d551d899aeb336e2f3bd07c695bb1ed2feb5b --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12564.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b45c026913fcbd415bef56f4bb2989759bd760dcec3cbb21863669bf842eae14 +size 1385445 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12565.json b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12565.json new file mode 100644 index 0000000000000000000000000000000000000000..2956235b600b77e267aa9ac375e0f0a2c6f3830c --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12565.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 318.3641997070008, + "exc_gmax_scale": 0.2726269331663144, + "generator": { + "allen_model_id": 497229117, + "allen_specimen_id": 314831019, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.2726269331663144, + "fit_parameters_sha256": "512e8becef949dcdf01fb3ee3efad1d7b9f1d5ae024fb3a491b2375ec4a86a4a", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "606d65fe0ec1fa579a5fec4575206d907baab6d84269d7da8359ff723f29361b", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 206, + "mean": 206.0, + "min": 206 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_314831019", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_314831019/model", + "samples": 2, + "shard_index": 12565, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12565.npz b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12565.npz new file mode 100644 index 0000000000000000000000000000000000000000..257278760e9b2a9f1070c7a05d9ee029ab16b21f --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12565.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:4f4ce0631a6442670daa54e2420c4a0bef282af071c62c0b9fc816757a74d43d +size 1419824 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12566.json b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12566.json new file mode 100644 index 0000000000000000000000000000000000000000..07f381b003c4f870837ec94361f89637f1a2adc8 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12566.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 321.3584917469998, + "exc_gmax_scale": 0.2726269331663144, + "generator": { + "allen_model_id": 497229117, + "allen_specimen_id": 314831019, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.2726269331663144, + "fit_parameters_sha256": "512e8becef949dcdf01fb3ee3efad1d7b9f1d5ae024fb3a491b2375ec4a86a4a", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "606d65fe0ec1fa579a5fec4575206d907baab6d84269d7da8359ff723f29361b", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 206, + "mean": 206.0, + "min": 206 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_314831019", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_314831019/model", + "samples": 2, + "shard_index": 12566, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12566.npz b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12566.npz new file mode 100644 index 0000000000000000000000000000000000000000..3fbfcb7ecf79469ebf3c34b50faa5d743bf1dea2 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12566.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:0d03e58932f63f5f4efc87abf262f21702fe1c056e2133e78a696f38a24611db +size 1417549 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12567.json b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12567.json new file mode 100644 index 0000000000000000000000000000000000000000..09ac9365e95075b1932b3bde42c9cab4d194f0e4 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12567.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 324.27722928500225, + "exc_gmax_scale": 0.2726269331663144, + "generator": { + "allen_model_id": 497229117, + "allen_specimen_id": 314831019, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.2726269331663144, + "fit_parameters_sha256": "512e8becef949dcdf01fb3ee3efad1d7b9f1d5ae024fb3a491b2375ec4a86a4a", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "606d65fe0ec1fa579a5fec4575206d907baab6d84269d7da8359ff723f29361b", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 206, + "mean": 206.0, + "min": 206 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_314831019", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_314831019/model", + "samples": 2, + "shard_index": 12567, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12567.npz b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12567.npz new file mode 100644 index 0000000000000000000000000000000000000000..2682670a5d7f798c06366578f34b5b64e6bfbfa3 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12567.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b2661eaa97ad07a40fc35345cf700d46736a111f819977c61281e1287de0fe24 +size 1400555 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12568.json b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12568.json new file mode 100644 index 0000000000000000000000000000000000000000..3152481b50b129c8b132a551e2ed42b8f7f06760 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12568.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 318.8311087479997, + "exc_gmax_scale": 0.2726269331663144, + "generator": { + "allen_model_id": 497229117, + "allen_specimen_id": 314831019, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.2726269331663144, + "fit_parameters_sha256": "512e8becef949dcdf01fb3ee3efad1d7b9f1d5ae024fb3a491b2375ec4a86a4a", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "606d65fe0ec1fa579a5fec4575206d907baab6d84269d7da8359ff723f29361b", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 206, + "mean": 206.0, + "min": 206 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_314831019", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_314831019/model", + "samples": 2, + "shard_index": 12568, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12568.npz b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12568.npz new file mode 100644 index 0000000000000000000000000000000000000000..71a30ca2e2094482ff4082cba3b05c8beaa12fa9 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12568.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:fba8bc18cdcadf03337a1b060738f12e53d93d80422c627fa4e10a0235770d08 +size 1382358 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12569.json b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12569.json new file mode 100644 index 0000000000000000000000000000000000000000..3049b1ea44e1584c8f531b80f75de85f06061213 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12569.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 319.7489168389984, + "exc_gmax_scale": 0.2726269331663144, + "generator": { + "allen_model_id": 497229117, + "allen_specimen_id": 314831019, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.2726269331663144, + "fit_parameters_sha256": "512e8becef949dcdf01fb3ee3efad1d7b9f1d5ae024fb3a491b2375ec4a86a4a", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "606d65fe0ec1fa579a5fec4575206d907baab6d84269d7da8359ff723f29361b", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 206, + "mean": 206.0, + "min": 206 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_314831019", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_314831019/model", + "samples": 2, + "shard_index": 12569, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12569.npz b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12569.npz new file mode 100644 index 0000000000000000000000000000000000000000..57c119d61ec8d4176c292ec97bb149b88b2cab84 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12569.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f5eee1d6c480a440c2f42bd72870a531b8a913e3d44d9ccc957b758964963e5a +size 1418659 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12570.json b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12570.json new file mode 100644 index 0000000000000000000000000000000000000000..1d83e949387a185f597e86699b056796f10ca210 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12570.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 323.0624062349998, + "exc_gmax_scale": 0.2726269331663144, + "generator": { + "allen_model_id": 497229117, + "allen_specimen_id": 314831019, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.2726269331663144, + "fit_parameters_sha256": "512e8becef949dcdf01fb3ee3efad1d7b9f1d5ae024fb3a491b2375ec4a86a4a", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "606d65fe0ec1fa579a5fec4575206d907baab6d84269d7da8359ff723f29361b", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 206, + "mean": 206.0, + "min": 206 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_314831019", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_314831019/model", + "samples": 2, + "shard_index": 12570, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12570.npz b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12570.npz new file mode 100644 index 0000000000000000000000000000000000000000..74d5b847bbd800cbdaf1ed9069e45e4b03513f69 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12570.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1ded5b98aeb3b777358e849c475ba4ce478fe72efc50c01bc3bdbaeb0bcb842f +size 1390638 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12571.json b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12571.json new file mode 100644 index 0000000000000000000000000000000000000000..18a9a192dd65f4b4df54c5beb38f4915ee108e0d --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12571.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 322.3484534309973, + "exc_gmax_scale": 0.2726269331663144, + "generator": { + "allen_model_id": 497229117, + "allen_specimen_id": 314831019, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.2726269331663144, + "fit_parameters_sha256": "512e8becef949dcdf01fb3ee3efad1d7b9f1d5ae024fb3a491b2375ec4a86a4a", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "606d65fe0ec1fa579a5fec4575206d907baab6d84269d7da8359ff723f29361b", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 206, + "mean": 206.0, + "min": 206 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_314831019", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_314831019/model", + "samples": 2, + "shard_index": 12571, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12571.npz b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12571.npz new file mode 100644 index 0000000000000000000000000000000000000000..10365719eeb798ba6d3931a4df0dd7f9a75d536a --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12571.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a253e92ae4f59abb7c0e344f0e97e9bcda72d48488b1a0130442c8c50bc38638 +size 1397887 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12572.json b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12572.json new file mode 100644 index 0000000000000000000000000000000000000000..484857dc206745454176bf95d3d3c237619b7471 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12572.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 319.8871638339988, + "exc_gmax_scale": 0.2726269331663144, + "generator": { + "allen_model_id": 497229117, + "allen_specimen_id": 314831019, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.2726269331663144, + "fit_parameters_sha256": "512e8becef949dcdf01fb3ee3efad1d7b9f1d5ae024fb3a491b2375ec4a86a4a", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "606d65fe0ec1fa579a5fec4575206d907baab6d84269d7da8359ff723f29361b", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 206, + "mean": 206.0, + "min": 206 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_314831019", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_314831019/model", + "samples": 2, + "shard_index": 12572, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12572.npz b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12572.npz new file mode 100644 index 0000000000000000000000000000000000000000..84bbb23b6885f4d90b9d43eddd0a4d38249ed1e2 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12572.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:cf1f40a3d838474a218f65d71d96f39e4f0df45edbc5a11b23064e6f020a0f72 +size 1413299 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12573.json b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12573.json new file mode 100644 index 0000000000000000000000000000000000000000..bd3ca2b0c4496b5d51eed8f4d9f1085cc73ed51d --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12573.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 320.83011043499937, + "exc_gmax_scale": 0.2726269331663144, + "generator": { + "allen_model_id": 497229117, + "allen_specimen_id": 314831019, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.2726269331663144, + "fit_parameters_sha256": "512e8becef949dcdf01fb3ee3efad1d7b9f1d5ae024fb3a491b2375ec4a86a4a", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "606d65fe0ec1fa579a5fec4575206d907baab6d84269d7da8359ff723f29361b", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 206, + "mean": 206.0, + "min": 206 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_314831019", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_314831019/model", + "samples": 2, + "shard_index": 12573, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12573.npz b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12573.npz new file mode 100644 index 0000000000000000000000000000000000000000..d104698ee02409b90bcd322f4dfcf323839ee4b4 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12573.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:dff42cc797cef6e0b28d7b7e1bccc87864f7c6c8353ba27c18099f126a41f6d6 +size 1400076 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12574.json b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12574.json new file mode 100644 index 0000000000000000000000000000000000000000..5ac0e32412b133c758f6aef77a21e3be06859e07 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12574.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 319.76388458600195, + "exc_gmax_scale": 0.2726269331663144, + "generator": { + "allen_model_id": 497229117, + "allen_specimen_id": 314831019, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.2726269331663144, + "fit_parameters_sha256": "512e8becef949dcdf01fb3ee3efad1d7b9f1d5ae024fb3a491b2375ec4a86a4a", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "606d65fe0ec1fa579a5fec4575206d907baab6d84269d7da8359ff723f29361b", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 206, + "mean": 206.0, + "min": 206 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_314831019", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_314831019/model", + "samples": 2, + "shard_index": 12574, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12574.npz b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12574.npz new file mode 100644 index 0000000000000000000000000000000000000000..6a849889cde3b64e8b603e3c13c68712eacaf632 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12574.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f150f7fbb3a5699c3871cf7e1e780263cabc5ac7aadacdea116cf07103f46710 +size 1424275 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12575.json b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12575.json new file mode 100644 index 0000000000000000000000000000000000000000..12ab86db38c7dd1b02c0346604110c31be90b9df --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12575.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 321.762063315, + "exc_gmax_scale": 0.2726269331663144, + "generator": { + "allen_model_id": 497229117, + "allen_specimen_id": 314831019, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.2726269331663144, + "fit_parameters_sha256": "512e8becef949dcdf01fb3ee3efad1d7b9f1d5ae024fb3a491b2375ec4a86a4a", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "606d65fe0ec1fa579a5fec4575206d907baab6d84269d7da8359ff723f29361b", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 206, + "mean": 206.0, + "min": 206 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_314831019", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_314831019/model", + "samples": 2, + "shard_index": 12575, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12575.npz b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12575.npz new file mode 100644 index 0000000000000000000000000000000000000000..ba6bb4a2d661d12bec1400f2816c3f8d238e6b09 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12575.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f1c6dbb1f4f4a2816a5ec9ff2f3a4445695c1f8c35892659b9dfa792a660b1e7 +size 1421442 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12576.json b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12576.json new file mode 100644 index 0000000000000000000000000000000000000000..c3f010416135aabf9fd97f3c23b6006fb411d18d --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12576.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 317.3508207650011, + "exc_gmax_scale": 0.2726269331663144, + "generator": { + "allen_model_id": 497229117, + "allen_specimen_id": 314831019, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.2726269331663144, + "fit_parameters_sha256": "512e8becef949dcdf01fb3ee3efad1d7b9f1d5ae024fb3a491b2375ec4a86a4a", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "606d65fe0ec1fa579a5fec4575206d907baab6d84269d7da8359ff723f29361b", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 206, + "mean": 206.0, + "min": 206 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_314831019", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_314831019/model", + "samples": 2, + "shard_index": 12576, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12576.npz b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12576.npz new file mode 100644 index 0000000000000000000000000000000000000000..cd9883331de25e1b7970b7ed065c939ec65477b7 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12576.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:17925d198e678b34031510a1bbfa76e0c7682fc3a429b91957dbbcdda2dd6bab +size 1423879 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12577.json b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12577.json new file mode 100644 index 0000000000000000000000000000000000000000..bcbba7a865337fa7b2d3680ffa421b801842320a --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12577.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 318.60151934100213, + "exc_gmax_scale": 0.2726269331663144, + "generator": { + "allen_model_id": 497229117, + "allen_specimen_id": 314831019, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.2726269331663144, + "fit_parameters_sha256": "512e8becef949dcdf01fb3ee3efad1d7b9f1d5ae024fb3a491b2375ec4a86a4a", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "606d65fe0ec1fa579a5fec4575206d907baab6d84269d7da8359ff723f29361b", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 206, + "mean": 206.0, + "min": 206 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_314831019", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_314831019/model", + "samples": 2, + "shard_index": 12577, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12577.npz b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12577.npz new file mode 100644 index 0000000000000000000000000000000000000000..9b207ef50d98318df24aa5768eb5f13d41d1ce6c --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12577.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:be9ddaac56cf4a3d490e6d2ccc0f2f7a9715c06ee5269ebcc4fe1abd179ae946 +size 1423177 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12578.json b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12578.json new file mode 100644 index 0000000000000000000000000000000000000000..e4bcf494b00f7eec5e182076054033e49f75edab --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12578.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 320.8446520899997, + "exc_gmax_scale": 0.2726269331663144, + "generator": { + "allen_model_id": 497229117, + "allen_specimen_id": 314831019, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.2726269331663144, + "fit_parameters_sha256": "512e8becef949dcdf01fb3ee3efad1d7b9f1d5ae024fb3a491b2375ec4a86a4a", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "606d65fe0ec1fa579a5fec4575206d907baab6d84269d7da8359ff723f29361b", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 206, + "mean": 206.0, + "min": 206 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_314831019", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_314831019/model", + "samples": 2, + "shard_index": 12578, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12578.npz b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12578.npz new file mode 100644 index 0000000000000000000000000000000000000000..175332d6181ec9eee40f8cf33b172c419319d079 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12578.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:9c553a0358384e4e89cf72bc7524e587f747c21675b723931aa34f81b23a16c2 +size 1393024 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12579.json b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12579.json new file mode 100644 index 0000000000000000000000000000000000000000..bd30420aeda42702313e821e174f801f8346a1aa --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12579.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 319.1857681770016, + "exc_gmax_scale": 0.2726269331663144, + "generator": { + "allen_model_id": 497229117, + "allen_specimen_id": 314831019, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.2726269331663144, + "fit_parameters_sha256": "512e8becef949dcdf01fb3ee3efad1d7b9f1d5ae024fb3a491b2375ec4a86a4a", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "606d65fe0ec1fa579a5fec4575206d907baab6d84269d7da8359ff723f29361b", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 206, + "mean": 206.0, + "min": 206 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_314831019", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_314831019/model", + "samples": 2, + "shard_index": 12579, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12579.npz b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12579.npz new file mode 100644 index 0000000000000000000000000000000000000000..84b22d268a9d2d26c6ceffb40654f6e11bc85299 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12579.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1b4619c919c5d0365efd08f1a7a808f884333c4f3765f1aeb12391d29e3c904d +size 1407343 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12580.json b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12580.json new file mode 100644 index 0000000000000000000000000000000000000000..a128537181a37b03e00bfa0a212789f45bc94748 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12580.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 318.3185984119991, + "exc_gmax_scale": 0.2726269331663144, + "generator": { + "allen_model_id": 497229117, + "allen_specimen_id": 314831019, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.2726269331663144, + "fit_parameters_sha256": "512e8becef949dcdf01fb3ee3efad1d7b9f1d5ae024fb3a491b2375ec4a86a4a", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "606d65fe0ec1fa579a5fec4575206d907baab6d84269d7da8359ff723f29361b", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 206, + "mean": 206.0, + "min": 206 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_314831019", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_314831019/model", + "samples": 2, + "shard_index": 12580, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12580.npz b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12580.npz new file mode 100644 index 0000000000000000000000000000000000000000..1942bfed5cc6f30fd169bf13e7b88a9a927e60e7 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_314831019_intervention_pair_12580.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:152ff150b401f309b1307db34ee2ff18c4b88acf1e55eeabbc2bfc3d13d1fb07 +size 1392373 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10645.json b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10645.json new file mode 100644 index 0000000000000000000000000000000000000000..93bc22942b1976e0fee5a6f043f15d29ce3bb5f3 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10645.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 435.30052861900185, + "exc_gmax_scale": 0.38555270635198524, + "generator": { + "allen_model_id": 497233307, + "allen_specimen_id": 354190013, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.38555270635198524, + "fit_parameters_sha256": "a2fe958157ca3411814d7b6460e7272d1c65178021582bb9f23574360e518641", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "fba7b07c95170c3d385c1b34e8a1f86a0cebb40a9cd3d7478d75d7788807a54f", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 307, + "mean": 307.0, + "min": 307 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_354190013", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_354190013/model", + "samples": 2, + "shard_index": 10645, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10645.npz b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10645.npz new file mode 100644 index 0000000000000000000000000000000000000000..8b788bec7769fe407d97a873bd5ae9b5a817ad69 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10645.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a9d85796568e01a02335ecc9a57f7c876e245ef8104c612f85761d1a92e2bb0d +size 1421088 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10646.json b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10646.json new file mode 100644 index 0000000000000000000000000000000000000000..236b64e7d4d0eb8e4db340566b9aca2317418c01 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10646.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 434.565206801999, + "exc_gmax_scale": 0.38555270635198524, + "generator": { + "allen_model_id": 497233307, + "allen_specimen_id": 354190013, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.38555270635198524, + "fit_parameters_sha256": "a2fe958157ca3411814d7b6460e7272d1c65178021582bb9f23574360e518641", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "fba7b07c95170c3d385c1b34e8a1f86a0cebb40a9cd3d7478d75d7788807a54f", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 307, + "mean": 307.0, + "min": 307 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_354190013", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_354190013/model", + "samples": 2, + "shard_index": 10646, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10646.npz b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10646.npz new file mode 100644 index 0000000000000000000000000000000000000000..f8f4cbc52bffff3b000ea9bc34b13cf2d0da9c78 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10646.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d81ceeadfc30f3a959547a4d3b7fdc0586c7535370c454f8e563f2f33861dc58 +size 1375159 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10647.json b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10647.json new file mode 100644 index 0000000000000000000000000000000000000000..656f93528db68c0ba1d322dd59ff9da7041aa63c --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10647.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 435.5464932879986, + "exc_gmax_scale": 0.38555270635198524, + "generator": { + "allen_model_id": 497233307, + "allen_specimen_id": 354190013, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.38555270635198524, + "fit_parameters_sha256": "a2fe958157ca3411814d7b6460e7272d1c65178021582bb9f23574360e518641", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "fba7b07c95170c3d385c1b34e8a1f86a0cebb40a9cd3d7478d75d7788807a54f", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 307, + "mean": 307.0, + "min": 307 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_354190013", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_354190013/model", + "samples": 2, + "shard_index": 10647, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10647.npz b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10647.npz new file mode 100644 index 0000000000000000000000000000000000000000..21415cf276d21e0a1f9bb63264febd5ef73fd0f0 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10647.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:5fe9421757a99c20f308a990f159e3652ecceb5d5790eb8503be6fc4a4d08b89 +size 1497227 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10648.json b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10648.json new file mode 100644 index 0000000000000000000000000000000000000000..60a83ab514b94187ca6e6270ffba3ff74bf40ad2 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10648.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 436.01149933599663, + "exc_gmax_scale": 0.38555270635198524, + "generator": { + "allen_model_id": 497233307, + "allen_specimen_id": 354190013, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.38555270635198524, + "fit_parameters_sha256": "a2fe958157ca3411814d7b6460e7272d1c65178021582bb9f23574360e518641", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "fba7b07c95170c3d385c1b34e8a1f86a0cebb40a9cd3d7478d75d7788807a54f", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 307, + "mean": 307.0, + "min": 307 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_354190013", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_354190013/model", + "samples": 2, + "shard_index": 10648, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10648.npz b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10648.npz new file mode 100644 index 0000000000000000000000000000000000000000..33990444e9b539dd5f3eddf34c3cd29ad29c150f --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10648.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:dd2449abee9332b71425b06980bd7583d72d7d2bbd64822977c19a184c143d00 +size 1385522 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10649.json b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10649.json new file mode 100644 index 0000000000000000000000000000000000000000..29db2bea0bfff12541665babacf8ed9f8f5d5849 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10649.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 435.61360839100234, + "exc_gmax_scale": 0.38555270635198524, + "generator": { + "allen_model_id": 497233307, + "allen_specimen_id": 354190013, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.38555270635198524, + "fit_parameters_sha256": "a2fe958157ca3411814d7b6460e7272d1c65178021582bb9f23574360e518641", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "fba7b07c95170c3d385c1b34e8a1f86a0cebb40a9cd3d7478d75d7788807a54f", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 307, + "mean": 307.0, + "min": 307 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_354190013", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_354190013/model", + "samples": 2, + "shard_index": 10649, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10649.npz b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10649.npz new file mode 100644 index 0000000000000000000000000000000000000000..a7fdd3a1a3258ee7a3f95fe3aee6c6655c10a3a8 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10649.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f650561b36ed7a30edb099607c6e6515bf6123197fce5f935257f8673d7bd2b3 +size 1461433 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10650.json b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10650.json new file mode 100644 index 0000000000000000000000000000000000000000..c3e939324ccc3d1f5d0547fa1b78aefe4bca8429 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10650.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 431.9356135380003, + "exc_gmax_scale": 0.38555270635198524, + "generator": { + "allen_model_id": 497233307, + "allen_specimen_id": 354190013, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.38555270635198524, + "fit_parameters_sha256": "a2fe958157ca3411814d7b6460e7272d1c65178021582bb9f23574360e518641", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "fba7b07c95170c3d385c1b34e8a1f86a0cebb40a9cd3d7478d75d7788807a54f", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 307, + "mean": 307.0, + "min": 307 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_354190013", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_354190013/model", + "samples": 2, + "shard_index": 10650, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10650.npz b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10650.npz new file mode 100644 index 0000000000000000000000000000000000000000..eb6b7664d4d57ae60b7a4bd0c061c13ffd0c0b60 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10650.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:73d29a1791d347e183e2efc33c6f9877b174545c656f1e6e9734e698b1037e30 +size 1450321 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10651.json b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10651.json new file mode 100644 index 0000000000000000000000000000000000000000..69f59d6183c9fd271f69ae50c89021756d919db5 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10651.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 442.7681167299961, + "exc_gmax_scale": 0.38555270635198524, + "generator": { + "allen_model_id": 497233307, + "allen_specimen_id": 354190013, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.38555270635198524, + "fit_parameters_sha256": "a2fe958157ca3411814d7b6460e7272d1c65178021582bb9f23574360e518641", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "fba7b07c95170c3d385c1b34e8a1f86a0cebb40a9cd3d7478d75d7788807a54f", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 307, + "mean": 307.0, + "min": 307 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_354190013", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_354190013/model", + "samples": 2, + "shard_index": 10651, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10651.npz b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10651.npz new file mode 100644 index 0000000000000000000000000000000000000000..6406b993b322617a470e9a8681a45a52b7a88e8d --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10651.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2cf55f8f713bd511313745a3ca8379af1726daf67bf83a4145221c6052844a67 +size 1388762 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10652.json b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10652.json new file mode 100644 index 0000000000000000000000000000000000000000..207b61f4c5af2606788f264c54cac33e64ecdc26 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10652.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 438.67921380900225, + "exc_gmax_scale": 0.38555270635198524, + "generator": { + "allen_model_id": 497233307, + "allen_specimen_id": 354190013, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.38555270635198524, + "fit_parameters_sha256": "a2fe958157ca3411814d7b6460e7272d1c65178021582bb9f23574360e518641", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "fba7b07c95170c3d385c1b34e8a1f86a0cebb40a9cd3d7478d75d7788807a54f", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 307, + "mean": 307.0, + "min": 307 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_354190013", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_354190013/model", + "samples": 2, + "shard_index": 10652, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10652.npz b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10652.npz new file mode 100644 index 0000000000000000000000000000000000000000..d08f8f206b6d368763da5fb494368802bf3b806e --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10652.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:576f6ffd1387f1383a272cbc5745bfb8f7a8098c3ddcbeec1df58ad32547137c +size 1424218 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10653.json b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10653.json new file mode 100644 index 0000000000000000000000000000000000000000..dfa5d61de9e3a62c366247fe8e2832632cb36b01 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10653.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 440.3393016400005, + "exc_gmax_scale": 0.38555270635198524, + "generator": { + "allen_model_id": 497233307, + "allen_specimen_id": 354190013, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.38555270635198524, + "fit_parameters_sha256": "a2fe958157ca3411814d7b6460e7272d1c65178021582bb9f23574360e518641", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "fba7b07c95170c3d385c1b34e8a1f86a0cebb40a9cd3d7478d75d7788807a54f", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 307, + "mean": 307.0, + "min": 307 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_354190013", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_354190013/model", + "samples": 2, + "shard_index": 10653, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10653.npz b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10653.npz new file mode 100644 index 0000000000000000000000000000000000000000..adb85270a4c0726954cd282674198a43938c8922 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10653.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b8153144de036d6905f67ead4b6923f6518059a3d18d6c022d70e1554035357a +size 1409938 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10654.json b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10654.json new file mode 100644 index 0000000000000000000000000000000000000000..39504a767cfcc09ce958e9a41c880acffefc4513 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10654.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 436.93697770900326, + "exc_gmax_scale": 0.38555270635198524, + "generator": { + "allen_model_id": 497233307, + "allen_specimen_id": 354190013, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.38555270635198524, + "fit_parameters_sha256": "a2fe958157ca3411814d7b6460e7272d1c65178021582bb9f23574360e518641", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "fba7b07c95170c3d385c1b34e8a1f86a0cebb40a9cd3d7478d75d7788807a54f", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 307, + "mean": 307.0, + "min": 307 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_354190013", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_354190013/model", + "samples": 2, + "shard_index": 10654, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10654.npz b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10654.npz new file mode 100644 index 0000000000000000000000000000000000000000..0ba2d3435e976e9aca74e490a44acabac7aae0d2 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10654.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e85e0cdbf7f0dfef5c7935af4423e9b0e4c4846283ba9ccc40d9791c29d94b0f +size 1417036 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10655.json b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10655.json new file mode 100644 index 0000000000000000000000000000000000000000..c06bda606a9ecd3c34a2ba317034cafdf3aefe38 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10655.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 432.4770505150009, + "exc_gmax_scale": 0.38555270635198524, + "generator": { + "allen_model_id": 497233307, + "allen_specimen_id": 354190013, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.38555270635198524, + "fit_parameters_sha256": "a2fe958157ca3411814d7b6460e7272d1c65178021582bb9f23574360e518641", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "fba7b07c95170c3d385c1b34e8a1f86a0cebb40a9cd3d7478d75d7788807a54f", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 307, + "mean": 307.0, + "min": 307 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_354190013", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_354190013/model", + "samples": 2, + "shard_index": 10655, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10655.npz b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10655.npz new file mode 100644 index 0000000000000000000000000000000000000000..e38f81419b8eb941ebe9a147a7510a99cb95db3a --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10655.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c30fb153a5827304eae58f5fed54ce5134be09eec3465d8bff54dc166fe61d47 +size 1433800 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10656.json b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10656.json new file mode 100644 index 0000000000000000000000000000000000000000..8329319bf1dbfca2c178e67a9bf1ad676730e4f8 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10656.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 435.07035840000026, + "exc_gmax_scale": 0.38555270635198524, + "generator": { + "allen_model_id": 497233307, + "allen_specimen_id": 354190013, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.38555270635198524, + "fit_parameters_sha256": "a2fe958157ca3411814d7b6460e7272d1c65178021582bb9f23574360e518641", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "fba7b07c95170c3d385c1b34e8a1f86a0cebb40a9cd3d7478d75d7788807a54f", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 307, + "mean": 307.0, + "min": 307 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_354190013", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_354190013/model", + "samples": 2, + "shard_index": 10656, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10656.npz b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10656.npz new file mode 100644 index 0000000000000000000000000000000000000000..aa3f5bd988e757dba05c258d3124a4c8cbcaeeb0 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10656.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:5a78c023fdcf32d8a8611a01c60bb1e34c1e5926dbfcf36f7808fc71a925cb55 +size 1395243 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10657.json b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10657.json new file mode 100644 index 0000000000000000000000000000000000000000..1a2e362d079e1cc5d478787e4cfbef68e10196c8 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10657.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 439.5445379859957, + "exc_gmax_scale": 0.38555270635198524, + "generator": { + "allen_model_id": 497233307, + "allen_specimen_id": 354190013, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.38555270635198524, + "fit_parameters_sha256": "a2fe958157ca3411814d7b6460e7272d1c65178021582bb9f23574360e518641", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "fba7b07c95170c3d385c1b34e8a1f86a0cebb40a9cd3d7478d75d7788807a54f", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 307, + "mean": 307.0, + "min": 307 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_354190013", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_354190013/model", + "samples": 2, + "shard_index": 10657, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10657.npz b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10657.npz new file mode 100644 index 0000000000000000000000000000000000000000..31558293dfd83044f0cd274526408312e8d83ae8 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10657.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:48924a7b82fe28cddd565d251896df14bfe5b1fc95d59af99cd210bc8a4803ba +size 1409537 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10658.json b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10658.json new file mode 100644 index 0000000000000000000000000000000000000000..b1353671d29ffcd82e50df6a60e686b467e2d20a --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10658.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 432.4310562029932, + "exc_gmax_scale": 0.38555270635198524, + "generator": { + "allen_model_id": 497233307, + "allen_specimen_id": 354190013, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.38555270635198524, + "fit_parameters_sha256": "a2fe958157ca3411814d7b6460e7272d1c65178021582bb9f23574360e518641", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "fba7b07c95170c3d385c1b34e8a1f86a0cebb40a9cd3d7478d75d7788807a54f", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 307, + "mean": 307.0, + "min": 307 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_354190013", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_354190013/model", + "samples": 2, + "shard_index": 10658, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10658.npz b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10658.npz new file mode 100644 index 0000000000000000000000000000000000000000..a12a2be53f42d6bb0f681381047186f1adfb821d --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10658.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2adc406165019369eb3cb7da6d358c1ca3331b9268ef1445be9b66bb09e86022 +size 1437405 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10659.json b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10659.json new file mode 100644 index 0000000000000000000000000000000000000000..727f9164ec8fb6a7f56afff0973d3085c74581f4 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10659.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 435.2888200430025, + "exc_gmax_scale": 0.38555270635198524, + "generator": { + "allen_model_id": 497233307, + "allen_specimen_id": 354190013, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.38555270635198524, + "fit_parameters_sha256": "a2fe958157ca3411814d7b6460e7272d1c65178021582bb9f23574360e518641", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "fba7b07c95170c3d385c1b34e8a1f86a0cebb40a9cd3d7478d75d7788807a54f", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 307, + "mean": 307.0, + "min": 307 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_354190013", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_354190013/model", + "samples": 2, + "shard_index": 10659, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10659.npz b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10659.npz new file mode 100644 index 0000000000000000000000000000000000000000..f02152475fd2adbc0e4830a051fd8fe53d56580b --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10659.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:0a4a6c5474e09546c2016e4ef910698b75e1ca9b7aa2a19d895a3a4464e928e4 +size 1432155 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10660.json b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10660.json new file mode 100644 index 0000000000000000000000000000000000000000..d70713ab12debb2f23f3e4ae10a188ce3b055278 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10660.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 437.4635866009994, + "exc_gmax_scale": 0.38555270635198524, + "generator": { + "allen_model_id": 497233307, + "allen_specimen_id": 354190013, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.38555270635198524, + "fit_parameters_sha256": "a2fe958157ca3411814d7b6460e7272d1c65178021582bb9f23574360e518641", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "fba7b07c95170c3d385c1b34e8a1f86a0cebb40a9cd3d7478d75d7788807a54f", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 307, + "mean": 307.0, + "min": 307 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_354190013", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_354190013/model", + "samples": 2, + "shard_index": 10660, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10660.npz b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10660.npz new file mode 100644 index 0000000000000000000000000000000000000000..690eb0bc18ec06147b628447cf84a124b4bfa943 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10660.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b7e47264650b9edcfcd4e6e902cf4066c2bf059831c7e9a2a941015942b0a3b1 +size 1422533 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10661.json b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10661.json new file mode 100644 index 0000000000000000000000000000000000000000..501313d458372e1e8c8e95419d1eb347fe8ddad4 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10661.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 442.09348099100316, + "exc_gmax_scale": 0.38555270635198524, + "generator": { + "allen_model_id": 497233307, + "allen_specimen_id": 354190013, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.38555270635198524, + "fit_parameters_sha256": "a2fe958157ca3411814d7b6460e7272d1c65178021582bb9f23574360e518641", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "fba7b07c95170c3d385c1b34e8a1f86a0cebb40a9cd3d7478d75d7788807a54f", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 307, + "mean": 307.0, + "min": 307 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_354190013", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_354190013/model", + "samples": 2, + "shard_index": 10661, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10661.npz b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10661.npz new file mode 100644 index 0000000000000000000000000000000000000000..4381e71d87e4c835dcffc0ea478b5c864bc7c29c --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10661.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c5e5e69cdc7ff26248da15f819070495469ba419c96f19cd44e4f0c9fef9c2dd +size 1367910 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10662.json b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10662.json new file mode 100644 index 0000000000000000000000000000000000000000..804e29c1459ca17eb6e316395cf46b7eef3c3a47 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10662.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 431.95005222400505, + "exc_gmax_scale": 0.38555270635198524, + "generator": { + "allen_model_id": 497233307, + "allen_specimen_id": 354190013, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.38555270635198524, + "fit_parameters_sha256": "a2fe958157ca3411814d7b6460e7272d1c65178021582bb9f23574360e518641", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "fba7b07c95170c3d385c1b34e8a1f86a0cebb40a9cd3d7478d75d7788807a54f", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 307, + "mean": 307.0, + "min": 307 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_354190013", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_354190013/model", + "samples": 2, + "shard_index": 10662, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10662.npz b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10662.npz new file mode 100644 index 0000000000000000000000000000000000000000..82e402c342cc4e29f1d7dc6a3dd12449dedafa98 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10662.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d39754b491c9455038fe44ffbf2d29a2299556425f8bcc18a5f84b5089175c76 +size 1416550 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10663.json b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10663.json new file mode 100644 index 0000000000000000000000000000000000000000..3b4206b8d534ce4694d66cede90ea74674e3aeda --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10663.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 426.2965999270018, + "exc_gmax_scale": 0.38555270635198524, + "generator": { + "allen_model_id": 497233307, + "allen_specimen_id": 354190013, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.38555270635198524, + "fit_parameters_sha256": "a2fe958157ca3411814d7b6460e7272d1c65178021582bb9f23574360e518641", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "fba7b07c95170c3d385c1b34e8a1f86a0cebb40a9cd3d7478d75d7788807a54f", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 307, + "mean": 307.0, + "min": 307 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_354190013", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_354190013/model", + "samples": 2, + "shard_index": 10663, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10663.npz b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10663.npz new file mode 100644 index 0000000000000000000000000000000000000000..c3cd1719f95af394eaf4264aaf6cc3d1d590ec04 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10663.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:71ebee3577ac658d556cc96b317c3abe4d1e9db1d87717c6594277c8329673cc +size 1396208 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10664.json b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10664.json new file mode 100644 index 0000000000000000000000000000000000000000..5d0d56e83249a5bd06dafbc7a70a8de66d0bbb76 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10664.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 369.5652164399944, + "exc_gmax_scale": 0.38555270635198524, + "generator": { + "allen_model_id": 497233307, + "allen_specimen_id": 354190013, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.38555270635198524, + "fit_parameters_sha256": "a2fe958157ca3411814d7b6460e7272d1c65178021582bb9f23574360e518641", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "fba7b07c95170c3d385c1b34e8a1f86a0cebb40a9cd3d7478d75d7788807a54f", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 307, + "mean": 307.0, + "min": 307 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_354190013", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_354190013/model", + "samples": 2, + "shard_index": 10664, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10664.npz b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10664.npz new file mode 100644 index 0000000000000000000000000000000000000000..04415b1868a4481339249302341bd8c14608a31f --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_354190013_intervention_pair_10664.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7a22a1f6a4d4ea023a0e25424b69186f31f43067cfc60790e3c9cc49f5e93d6c +size 1382903 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11603.json b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11603.json new file mode 100644 index 0000000000000000000000000000000000000000..9b1e7c2a2909783272170ecb46d7a6586a1c2fd3 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11603.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 362.2203331259989, + "exc_gmax_scale": 0.5946035575013605, + "generator": { + "allen_model_id": 497233139, + "allen_specimen_id": 468120757, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.5946035575013605, + "fit_parameters_sha256": "f2d702b30ffded041024c33099acf35e12786036e708a7cfb826d38bbe3be2cd", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "becef39f3d4b21b8025598da15fd3c76be9e061aa362823a19bc41bb86e794eb", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 240, + "mean": 240.0, + "min": 240 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_468120757", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_468120757/model", + "samples": 2, + "shard_index": 11603, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11603.npz b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11603.npz new file mode 100644 index 0000000000000000000000000000000000000000..443ef888125b5deefc0745d98d531f0a248cfce5 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11603.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f7a13e3f95041ab3f490783dbe946db4525fbb34c05787be22916ec7050c3988 +size 1409756 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11604.json b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11604.json new file mode 100644 index 0000000000000000000000000000000000000000..58d40ffba977aa80d81d87bcd0270c93191acc81 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11604.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 365.40478258000076, + "exc_gmax_scale": 0.5946035575013605, + "generator": { + "allen_model_id": 497233139, + "allen_specimen_id": 468120757, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.5946035575013605, + "fit_parameters_sha256": "f2d702b30ffded041024c33099acf35e12786036e708a7cfb826d38bbe3be2cd", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "becef39f3d4b21b8025598da15fd3c76be9e061aa362823a19bc41bb86e794eb", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 240, + "mean": 240.0, + "min": 240 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_468120757", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_468120757/model", + "samples": 2, + "shard_index": 11604, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11604.npz b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11604.npz new file mode 100644 index 0000000000000000000000000000000000000000..3a461c4ad13a428c6c94f54ab17694246b27c0aa --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11604.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1b49b0a417d0d31db13a41893e4f9be798e5565b20fe09bfd1682f5e09a0e621 +size 1426125 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11605.json b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11605.json new file mode 100644 index 0000000000000000000000000000000000000000..d04166bf8f217fca8af674526973ebcd052776c4 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11605.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 363.4781468859983, + "exc_gmax_scale": 0.5946035575013605, + "generator": { + "allen_model_id": 497233139, + "allen_specimen_id": 468120757, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.5946035575013605, + "fit_parameters_sha256": "f2d702b30ffded041024c33099acf35e12786036e708a7cfb826d38bbe3be2cd", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "becef39f3d4b21b8025598da15fd3c76be9e061aa362823a19bc41bb86e794eb", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 240, + "mean": 240.0, + "min": 240 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_468120757", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_468120757/model", + "samples": 2, + "shard_index": 11605, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11605.npz b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11605.npz new file mode 100644 index 0000000000000000000000000000000000000000..f75a50c125658e29681a0c3a47fbe4fdfd0c3248 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11605.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:bd94aa17a213f8d0d2d1915098d231c81854da1094b559d8226a269fdac8f816 +size 1387384 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11606.json b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11606.json new file mode 100644 index 0000000000000000000000000000000000000000..b2da57211dfd90af80d5b245cf3ff8fc091d5541 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11606.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 363.7352580370025, + "exc_gmax_scale": 0.5946035575013605, + "generator": { + "allen_model_id": 497233139, + "allen_specimen_id": 468120757, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.5946035575013605, + "fit_parameters_sha256": "f2d702b30ffded041024c33099acf35e12786036e708a7cfb826d38bbe3be2cd", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "becef39f3d4b21b8025598da15fd3c76be9e061aa362823a19bc41bb86e794eb", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 240, + "mean": 240.0, + "min": 240 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_468120757", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_468120757/model", + "samples": 2, + "shard_index": 11606, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11606.npz b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11606.npz new file mode 100644 index 0000000000000000000000000000000000000000..727260f90497eacc15cb5eda08ddf3922596e089 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11606.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f3bb604db4f8b2b902d5acb0ee61af1d35e35d835627c8115c1ee2a38c9785c6 +size 1455452 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11607.json b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11607.json new file mode 100644 index 0000000000000000000000000000000000000000..1810405a7d85c80709583ac91abf9bf919cfef8d --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11607.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 361.02401145800104, + "exc_gmax_scale": 0.5946035575013605, + "generator": { + "allen_model_id": 497233139, + "allen_specimen_id": 468120757, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.5946035575013605, + "fit_parameters_sha256": "f2d702b30ffded041024c33099acf35e12786036e708a7cfb826d38bbe3be2cd", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "becef39f3d4b21b8025598da15fd3c76be9e061aa362823a19bc41bb86e794eb", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 240, + "mean": 240.0, + "min": 240 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_468120757", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_468120757/model", + "samples": 2, + "shard_index": 11607, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11607.npz b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11607.npz new file mode 100644 index 0000000000000000000000000000000000000000..c43af5a3ca00c75f85633dab7cd624f269ca5cbc --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11607.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:019c43f13b39886cf029d96c2eb16f9eaf6e60534f3fb314c33e453bf2f3401e +size 1442317 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11608.json b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11608.json new file mode 100644 index 0000000000000000000000000000000000000000..a86d39103adf83831cae02c1128efd2cf74a4701 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11608.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 363.11954564999905, + "exc_gmax_scale": 0.5946035575013605, + "generator": { + "allen_model_id": 497233139, + "allen_specimen_id": 468120757, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.5946035575013605, + "fit_parameters_sha256": "f2d702b30ffded041024c33099acf35e12786036e708a7cfb826d38bbe3be2cd", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "becef39f3d4b21b8025598da15fd3c76be9e061aa362823a19bc41bb86e794eb", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 240, + "mean": 240.0, + "min": 240 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_468120757", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_468120757/model", + "samples": 2, + "shard_index": 11608, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11608.npz b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11608.npz new file mode 100644 index 0000000000000000000000000000000000000000..29ef3a1cba0a73bf970ee04839944e2e93608a82 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11608.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ca83a308c4be665cee8b9a6cf794417568929fabf1ab63035bd8afb638b0cad3 +size 1440560 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11609.json b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11609.json new file mode 100644 index 0000000000000000000000000000000000000000..b5b85d21f94d0885f30d16449ace907f3b002d39 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11609.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 363.6654762270009, + "exc_gmax_scale": 0.5946035575013605, + "generator": { + "allen_model_id": 497233139, + "allen_specimen_id": 468120757, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.5946035575013605, + "fit_parameters_sha256": "f2d702b30ffded041024c33099acf35e12786036e708a7cfb826d38bbe3be2cd", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "becef39f3d4b21b8025598da15fd3c76be9e061aa362823a19bc41bb86e794eb", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 240, + "mean": 240.0, + "min": 240 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_468120757", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_468120757/model", + "samples": 2, + "shard_index": 11609, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11609.npz b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11609.npz new file mode 100644 index 0000000000000000000000000000000000000000..7ba65e74ce6cf939e482fe69e811b36dba24fb64 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11609.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a291d5e3d8ce49db95644030d3f0da42f132fcf6bdae5a9f7eb9fb5b6f4a209b +size 1431726 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11610.json b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11610.json new file mode 100644 index 0000000000000000000000000000000000000000..716e6716220d05a9896ee5230953ccaaf29c98dd --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11610.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 364.7751098899971, + "exc_gmax_scale": 0.5946035575013605, + "generator": { + "allen_model_id": 497233139, + "allen_specimen_id": 468120757, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.5946035575013605, + "fit_parameters_sha256": "f2d702b30ffded041024c33099acf35e12786036e708a7cfb826d38bbe3be2cd", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "becef39f3d4b21b8025598da15fd3c76be9e061aa362823a19bc41bb86e794eb", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 240, + "mean": 240.0, + "min": 240 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_468120757", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_468120757/model", + "samples": 2, + "shard_index": 11610, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11610.npz b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11610.npz new file mode 100644 index 0000000000000000000000000000000000000000..a566b83abe52687f2e6ae49e270ebb3ef9c8667d --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11610.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:6b2265e6c6b3b9b09c09e1b0e71df24328889fc7624e001f870d38e2f2ad9794 +size 1385512 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11611.json b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11611.json new file mode 100644 index 0000000000000000000000000000000000000000..b231eaea4ee9a8a859c27918d479ab18d66fb57d --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11611.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 363.38283460599996, + "exc_gmax_scale": 0.5946035575013605, + "generator": { + "allen_model_id": 497233139, + "allen_specimen_id": 468120757, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.5946035575013605, + "fit_parameters_sha256": "f2d702b30ffded041024c33099acf35e12786036e708a7cfb826d38bbe3be2cd", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "becef39f3d4b21b8025598da15fd3c76be9e061aa362823a19bc41bb86e794eb", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 240, + "mean": 240.0, + "min": 240 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_468120757", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_468120757/model", + "samples": 2, + "shard_index": 11611, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11611.npz b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11611.npz new file mode 100644 index 0000000000000000000000000000000000000000..fbf2269eed350c46c979794922a387073703aa0a --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11611.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:fde50c5df0ceb8ab3bec74a4dbd7c142a8ff53d67adb125e606137d2b975ecdf +size 1473950 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11612.json b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11612.json new file mode 100644 index 0000000000000000000000000000000000000000..fc1c346988b204b32d9da24f819789c7ca84092e --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11612.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 368.6970741510013, + "exc_gmax_scale": 0.5946035575013605, + "generator": { + "allen_model_id": 497233139, + "allen_specimen_id": 468120757, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.5946035575013605, + "fit_parameters_sha256": "f2d702b30ffded041024c33099acf35e12786036e708a7cfb826d38bbe3be2cd", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "becef39f3d4b21b8025598da15fd3c76be9e061aa362823a19bc41bb86e794eb", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 240, + "mean": 240.0, + "min": 240 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_468120757", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_468120757/model", + "samples": 2, + "shard_index": 11612, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11612.npz b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11612.npz new file mode 100644 index 0000000000000000000000000000000000000000..9fd922f643f8c3a8491d04a8f902cc604245ee2d --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11612.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2ff565365d39db0ebc38895ae3bf85ef33b7d51a5e58449c46fad73c512c574b +size 1410837 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11613.json b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11613.json new file mode 100644 index 0000000000000000000000000000000000000000..dc1e3358f54b43a7363a325e43ea90c0d12330a8 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11613.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 365.87904105899725, + "exc_gmax_scale": 0.5946035575013605, + "generator": { + "allen_model_id": 497233139, + "allen_specimen_id": 468120757, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.5946035575013605, + "fit_parameters_sha256": "f2d702b30ffded041024c33099acf35e12786036e708a7cfb826d38bbe3be2cd", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "becef39f3d4b21b8025598da15fd3c76be9e061aa362823a19bc41bb86e794eb", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 240, + "mean": 240.0, + "min": 240 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_468120757", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_468120757/model", + "samples": 2, + "shard_index": 11613, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11613.npz b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11613.npz new file mode 100644 index 0000000000000000000000000000000000000000..c01bc9daaaabd5ba82fef9a312827df057464570 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11613.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:781a8ab9baafa2aefd5496bab9dcba856f94aa829807df9c3200fc974253ecdc +size 1417283 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11614.json b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11614.json new file mode 100644 index 0000000000000000000000000000000000000000..bc698d5de4d85e2c6f913b7948e508194190c5f5 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11614.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 365.95147141300185, + "exc_gmax_scale": 0.5946035575013605, + "generator": { + "allen_model_id": 497233139, + "allen_specimen_id": 468120757, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.5946035575013605, + "fit_parameters_sha256": "f2d702b30ffded041024c33099acf35e12786036e708a7cfb826d38bbe3be2cd", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "becef39f3d4b21b8025598da15fd3c76be9e061aa362823a19bc41bb86e794eb", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 240, + "mean": 240.0, + "min": 240 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_468120757", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_468120757/model", + "samples": 2, + "shard_index": 11614, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11614.npz b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11614.npz new file mode 100644 index 0000000000000000000000000000000000000000..c833ecc3eb9ff8e8cedc5419f113a2b9bce2da8f --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11614.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:bc824223b8ed825bb62db3ee8ebe2a2d978eea1600185448d758f57616ce53b3 +size 1421430 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11615.json b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11615.json new file mode 100644 index 0000000000000000000000000000000000000000..dd5488741faebc2a523acdcc36fb9ee1d17ce615 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11615.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 363.50904648399955, + "exc_gmax_scale": 0.5946035575013605, + "generator": { + "allen_model_id": 497233139, + "allen_specimen_id": 468120757, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.5946035575013605, + "fit_parameters_sha256": "f2d702b30ffded041024c33099acf35e12786036e708a7cfb826d38bbe3be2cd", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "becef39f3d4b21b8025598da15fd3c76be9e061aa362823a19bc41bb86e794eb", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 240, + "mean": 240.0, + "min": 240 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_468120757", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_468120757/model", + "samples": 2, + "shard_index": 11615, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11615.npz b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11615.npz new file mode 100644 index 0000000000000000000000000000000000000000..117ef8c4af539f6c3f134bb783cbda160a326682 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11615.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ecc35f2e94fb3b762343f76691f6aaff425729cb70eff41bac783b2e270217ec +size 1425590 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11616.json b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11616.json new file mode 100644 index 0000000000000000000000000000000000000000..5d9ed84b012e02d59b0cf7a6610b76373cfba11d --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11616.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 360.5693605080014, + "exc_gmax_scale": 0.5946035575013605, + "generator": { + "allen_model_id": 497233139, + "allen_specimen_id": 468120757, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.5946035575013605, + "fit_parameters_sha256": "f2d702b30ffded041024c33099acf35e12786036e708a7cfb826d38bbe3be2cd", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "becef39f3d4b21b8025598da15fd3c76be9e061aa362823a19bc41bb86e794eb", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 240, + "mean": 240.0, + "min": 240 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_468120757", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_468120757/model", + "samples": 2, + "shard_index": 11616, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11616.npz b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11616.npz new file mode 100644 index 0000000000000000000000000000000000000000..f0dfaaf4379159468973498d38368fd95c9c3830 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11616.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:81666b00b3911e72ad678052630ca9d1bebe1c09fe816b0050ef57f32a3d97b3 +size 1398847 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11617.json b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11617.json new file mode 100644 index 0000000000000000000000000000000000000000..9e94456e3831b79b636dd8487e3d95a876d6c7bf --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11617.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 365.3361209950017, + "exc_gmax_scale": 0.5946035575013605, + "generator": { + "allen_model_id": 497233139, + "allen_specimen_id": 468120757, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.5946035575013605, + "fit_parameters_sha256": "f2d702b30ffded041024c33099acf35e12786036e708a7cfb826d38bbe3be2cd", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "becef39f3d4b21b8025598da15fd3c76be9e061aa362823a19bc41bb86e794eb", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 240, + "mean": 240.0, + "min": 240 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_468120757", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_468120757/model", + "samples": 2, + "shard_index": 11617, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11617.npz b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11617.npz new file mode 100644 index 0000000000000000000000000000000000000000..69e316b8126985576caed9610f85ce3f1573bd25 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11617.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:aa0bf22b1c2a46240bd86f38cba11bfc82e46c010b3a4f9ad0cb162e1addc5fa +size 1434751 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11618.json b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11618.json new file mode 100644 index 0000000000000000000000000000000000000000..56133e93607e9f32f257cec79380d6895dd1530c --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11618.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 361.34751446000155, + "exc_gmax_scale": 0.5946035575013605, + "generator": { + "allen_model_id": 497233139, + "allen_specimen_id": 468120757, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.5946035575013605, + "fit_parameters_sha256": "f2d702b30ffded041024c33099acf35e12786036e708a7cfb826d38bbe3be2cd", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "becef39f3d4b21b8025598da15fd3c76be9e061aa362823a19bc41bb86e794eb", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 240, + "mean": 240.0, + "min": 240 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_468120757", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_468120757/model", + "samples": 2, + "shard_index": 11618, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11618.npz b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11618.npz new file mode 100644 index 0000000000000000000000000000000000000000..111b92b4a00f53715fa1178bb1df32848595b73b --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11618.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:3249e91bce9fc31b38910b0a65a7ef5da6438615edcb1e5d29e74bf17e856200 +size 1416606 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11619.json b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11619.json new file mode 100644 index 0000000000000000000000000000000000000000..10defce4a4fec6726b059aa3bfa20cb5704ee1c9 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11619.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 362.2000996120005, + "exc_gmax_scale": 0.5946035575013605, + "generator": { + "allen_model_id": 497233139, + "allen_specimen_id": 468120757, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.5946035575013605, + "fit_parameters_sha256": "f2d702b30ffded041024c33099acf35e12786036e708a7cfb826d38bbe3be2cd", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "becef39f3d4b21b8025598da15fd3c76be9e061aa362823a19bc41bb86e794eb", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 240, + "mean": 240.0, + "min": 240 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_468120757", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_468120757/model", + "samples": 2, + "shard_index": 11619, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11619.npz b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11619.npz new file mode 100644 index 0000000000000000000000000000000000000000..cbe61695ad7767c1e18d715f4cc9df9099f46607 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11619.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:1f4b34edda65cbe2ac6076d8cae3cd70eabcae2f8129b3f395119417d4dddb20 +size 1416049 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11620.json b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11620.json new file mode 100644 index 0000000000000000000000000000000000000000..0e0508f2ca511f8acd6b9d5bad3f9560fc25bdf6 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11620.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 362.8397826590008, + "exc_gmax_scale": 0.5946035575013605, + "generator": { + "allen_model_id": 497233139, + "allen_specimen_id": 468120757, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.5946035575013605, + "fit_parameters_sha256": "f2d702b30ffded041024c33099acf35e12786036e708a7cfb826d38bbe3be2cd", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "becef39f3d4b21b8025598da15fd3c76be9e061aa362823a19bc41bb86e794eb", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 240, + "mean": 240.0, + "min": 240 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_468120757", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_468120757/model", + "samples": 2, + "shard_index": 11620, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11620.npz b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11620.npz new file mode 100644 index 0000000000000000000000000000000000000000..fcb10c0b5e2e026ba80338d2e9ff2b9f13ea4096 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11620.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:12f32d319b75c07a4c82c9b34955d14965dae7fc80469cd3581a1381c89f5a5f +size 1404747 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11621.json b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11621.json new file mode 100644 index 0000000000000000000000000000000000000000..c2f074e8c6ed4075e1f6c71164e21527a8f4cd47 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11621.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 360.54194874300083, + "exc_gmax_scale": 0.5946035575013605, + "generator": { + "allen_model_id": 497233139, + "allen_specimen_id": 468120757, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.5946035575013605, + "fit_parameters_sha256": "f2d702b30ffded041024c33099acf35e12786036e708a7cfb826d38bbe3be2cd", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "becef39f3d4b21b8025598da15fd3c76be9e061aa362823a19bc41bb86e794eb", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 240, + "mean": 240.0, + "min": 240 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_468120757", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_468120757/model", + "samples": 2, + "shard_index": 11621, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11621.npz b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11621.npz new file mode 100644 index 0000000000000000000000000000000000000000..c34f3fe12727ed2ae2b63a73780d26bb4c8579ac --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11621.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:3924883b01ac1150e51429fbb8f785d85ec60f5c6d34624a2bc08f23a6d0911f +size 1417585 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11622.json b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11622.json new file mode 100644 index 0000000000000000000000000000000000000000..481531b2ac88aba093634f0ab6d911c8ab565f36 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11622.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 365.5953468000007, + "exc_gmax_scale": 0.5946035575013605, + "generator": { + "allen_model_id": 497233139, + "allen_specimen_id": 468120757, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.5946035575013605, + "fit_parameters_sha256": "f2d702b30ffded041024c33099acf35e12786036e708a7cfb826d38bbe3be2cd", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "becef39f3d4b21b8025598da15fd3c76be9e061aa362823a19bc41bb86e794eb", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 240, + "mean": 240.0, + "min": 240 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_468120757", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_468120757/model", + "samples": 2, + "shard_index": 11622, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11622.npz b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11622.npz new file mode 100644 index 0000000000000000000000000000000000000000..d24dcf026c309200eb264ba4315bb822cd68813b --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_468120757_intervention_pair_11622.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:03dbc96282210c135c62e504104861180264fa9b49cd00a686745e21b167409f +size 1425003 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01796.json b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01796.json new file mode 100644 index 0000000000000000000000000000000000000000..548d62f400aae48da97b59b01cf7aefa3717f531 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01796.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 395.579887691998, + "exc_gmax_scale": 1.6817928305074292, + "generator": { + "allen_model_id": 497233049, + "allen_specimen_id": 471129934, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 1.6817928305074292, + "fit_parameters_sha256": "62396e011e3ececc3489fa2882ababebeb99fef5aa12cdcd3f2054023fb6b443", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "a810d5ae22263cfa8c9234ce3470eaa26d126a726f3c38d60a6dc6745ba89af5", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 259, + "mean": 259.0, + "min": 259 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_471129934", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_471129934/model", + "samples": 2, + "shard_index": 1796, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01796.npz b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01796.npz new file mode 100644 index 0000000000000000000000000000000000000000..cb2bb736b40986e258a698c127f685e53436d06d --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01796.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:cef8c3e626fddc73442455a79cec7301e379edfc8826c7654cbee6e86a888f18 +size 1411846 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01797.json b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01797.json new file mode 100644 index 0000000000000000000000000000000000000000..f932a631d835b3ecadcc61dd999617e060bc04d9 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01797.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 394.5772455769984, + "exc_gmax_scale": 1.6817928305074292, + "generator": { + "allen_model_id": 497233049, + "allen_specimen_id": 471129934, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 1.6817928305074292, + "fit_parameters_sha256": "62396e011e3ececc3489fa2882ababebeb99fef5aa12cdcd3f2054023fb6b443", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "a810d5ae22263cfa8c9234ce3470eaa26d126a726f3c38d60a6dc6745ba89af5", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 259, + "mean": 259.0, + "min": 259 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_471129934", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_471129934/model", + "samples": 2, + "shard_index": 1797, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01797.npz b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01797.npz new file mode 100644 index 0000000000000000000000000000000000000000..4c0428b9bce714c7e05a5f08c5febf13f6fd993f --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01797.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:ff4d4841d568e00ec3f3e5e1d5cd4446b0b7469b7a9fe33c8baea3a65571e207 +size 1421260 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01798.json b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01798.json new file mode 100644 index 0000000000000000000000000000000000000000..974f3c672e1192bcbce5430450fb69030b748ee1 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01798.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 395.136682286, + "exc_gmax_scale": 1.6817928305074292, + "generator": { + "allen_model_id": 497233049, + "allen_specimen_id": 471129934, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 1.6817928305074292, + "fit_parameters_sha256": "62396e011e3ececc3489fa2882ababebeb99fef5aa12cdcd3f2054023fb6b443", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "a810d5ae22263cfa8c9234ce3470eaa26d126a726f3c38d60a6dc6745ba89af5", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 259, + "mean": 259.0, + "min": 259 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_471129934", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_471129934/model", + "samples": 2, + "shard_index": 1798, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01798.npz b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01798.npz new file mode 100644 index 0000000000000000000000000000000000000000..dae9c34774820af0c3fc58e07eb2b6090ba19c0f --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01798.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a65d673fec4280aed2130770e3a7df9a66b66241c99f2542590f2246c42c6dbb +size 1374352 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01799.json b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01799.json new file mode 100644 index 0000000000000000000000000000000000000000..958eed1f8a24a01944e69a35a2526d5bf09503ad --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01799.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 393.68448880800133, + "exc_gmax_scale": 1.6817928305074292, + "generator": { + "allen_model_id": 497233049, + "allen_specimen_id": 471129934, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 1.6817928305074292, + "fit_parameters_sha256": "62396e011e3ececc3489fa2882ababebeb99fef5aa12cdcd3f2054023fb6b443", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "a810d5ae22263cfa8c9234ce3470eaa26d126a726f3c38d60a6dc6745ba89af5", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 259, + "mean": 259.0, + "min": 259 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_471129934", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_471129934/model", + "samples": 2, + "shard_index": 1799, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01799.npz b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01799.npz new file mode 100644 index 0000000000000000000000000000000000000000..ec6f02eed06707bae5ac3c3b83095d8b752bf56c --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01799.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:23ffffa4f2ddbd99848a97f77f99a1bf96afeaad24ec5144a538efd6155d1043 +size 1407171 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01800.json b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01800.json new file mode 100644 index 0000000000000000000000000000000000000000..c78078021a4a0b75055e6a53a000881c8b2b4f35 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01800.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 393.4098512890014, + "exc_gmax_scale": 1.6817928305074292, + "generator": { + "allen_model_id": 497233049, + "allen_specimen_id": 471129934, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 1.6817928305074292, + "fit_parameters_sha256": "62396e011e3ececc3489fa2882ababebeb99fef5aa12cdcd3f2054023fb6b443", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "a810d5ae22263cfa8c9234ce3470eaa26d126a726f3c38d60a6dc6745ba89af5", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 259, + "mean": 259.0, + "min": 259 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_471129934", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_471129934/model", + "samples": 2, + "shard_index": 1800, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01800.npz b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01800.npz new file mode 100644 index 0000000000000000000000000000000000000000..68e04c85f92219bee906e4b66f8eec703ae71bc2 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01800.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7dec0e7c0d8a2caa44237924d158bfa62b97de17c51b0db18fe36e0e6b57fb79 +size 1415981 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01801.json b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01801.json new file mode 100644 index 0000000000000000000000000000000000000000..f3805631ef8cfebda37c53bb635cc359e820b511 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01801.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 393.81428915799916, + "exc_gmax_scale": 1.6817928305074292, + "generator": { + "allen_model_id": 497233049, + "allen_specimen_id": 471129934, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 1.6817928305074292, + "fit_parameters_sha256": "62396e011e3ececc3489fa2882ababebeb99fef5aa12cdcd3f2054023fb6b443", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "a810d5ae22263cfa8c9234ce3470eaa26d126a726f3c38d60a6dc6745ba89af5", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 259, + "mean": 259.0, + "min": 259 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_471129934", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_471129934/model", + "samples": 2, + "shard_index": 1801, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01801.npz b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01801.npz new file mode 100644 index 0000000000000000000000000000000000000000..182989d21ff9527ffa8cd86ccdc0e6eb1ddc0cc4 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01801.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:fe9748fef348877d572ad66b043a9e188ad4b64d93360746c181dd0eac972bce +size 1456351 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01802.json b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01802.json new file mode 100644 index 0000000000000000000000000000000000000000..ff6651c8db052cf831dc2c67debabd52bc5c274d --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01802.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 394.7359996089981, + "exc_gmax_scale": 1.6817928305074292, + "generator": { + "allen_model_id": 497233049, + "allen_specimen_id": 471129934, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 1.6817928305074292, + "fit_parameters_sha256": "62396e011e3ececc3489fa2882ababebeb99fef5aa12cdcd3f2054023fb6b443", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "a810d5ae22263cfa8c9234ce3470eaa26d126a726f3c38d60a6dc6745ba89af5", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 259, + "mean": 259.0, + "min": 259 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_471129934", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_471129934/model", + "samples": 2, + "shard_index": 1802, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01802.npz b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01802.npz new file mode 100644 index 0000000000000000000000000000000000000000..cff0f7bb9adb7cd4db774150f84793a53068049f --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01802.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2a0564e91ff3b7ed2d106bc7193235d8463aeefc91769a44707e121a572644c8 +size 1460399 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01803.json b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01803.json new file mode 100644 index 0000000000000000000000000000000000000000..f208f3d5daf359b855674cc0c325dc00ca9825f7 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01803.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 398.7253629830011, + "exc_gmax_scale": 1.6817928305074292, + "generator": { + "allen_model_id": 497233049, + "allen_specimen_id": 471129934, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 1.6817928305074292, + "fit_parameters_sha256": "62396e011e3ececc3489fa2882ababebeb99fef5aa12cdcd3f2054023fb6b443", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "a810d5ae22263cfa8c9234ce3470eaa26d126a726f3c38d60a6dc6745ba89af5", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 259, + "mean": 259.0, + "min": 259 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_471129934", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_471129934/model", + "samples": 2, + "shard_index": 1803, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01803.npz b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01803.npz new file mode 100644 index 0000000000000000000000000000000000000000..2218bbb51c787ed91e9cb4a6fc288b00c5b01ade --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01803.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b3ecc94f8cc424145a302cc33bec8c6b47201364d49647fe223d686af749309d +size 1420074 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01804.json b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01804.json new file mode 100644 index 0000000000000000000000000000000000000000..45b1cba0cbb932301a4980de9023668ca985047d --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01804.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 396.1901940880016, + "exc_gmax_scale": 1.6817928305074292, + "generator": { + "allen_model_id": 497233049, + "allen_specimen_id": 471129934, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 1.6817928305074292, + "fit_parameters_sha256": "62396e011e3ececc3489fa2882ababebeb99fef5aa12cdcd3f2054023fb6b443", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "a810d5ae22263cfa8c9234ce3470eaa26d126a726f3c38d60a6dc6745ba89af5", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 259, + "mean": 259.0, + "min": 259 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_471129934", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_471129934/model", + "samples": 2, + "shard_index": 1804, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01804.npz b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01804.npz new file mode 100644 index 0000000000000000000000000000000000000000..3690f4e47a91185aa3572d42d3795758197aba4c --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01804.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:7709ea0b1be5de68edf44ca6de6c48285b8a2af95db5f7bf42e22892205c0e64 +size 1470627 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01805.json b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01805.json new file mode 100644 index 0000000000000000000000000000000000000000..7d8cb46b032015ee7d55846463947b868e31ab90 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01805.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 396.60945348800306, + "exc_gmax_scale": 1.6817928305074292, + "generator": { + "allen_model_id": 497233049, + "allen_specimen_id": 471129934, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 1.6817928305074292, + "fit_parameters_sha256": "62396e011e3ececc3489fa2882ababebeb99fef5aa12cdcd3f2054023fb6b443", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "a810d5ae22263cfa8c9234ce3470eaa26d126a726f3c38d60a6dc6745ba89af5", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 259, + "mean": 259.0, + "min": 259 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_471129934", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_471129934/model", + "samples": 2, + "shard_index": 1805, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01805.npz b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01805.npz new file mode 100644 index 0000000000000000000000000000000000000000..433ded82ac0fa28df21139c3a1264c4614645316 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01805.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e6bbb49bc7c58c97dfb115ea0ab8b8e1acc50537df4c486c1d37a6496c10eba9 +size 1440799 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01806.json b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01806.json new file mode 100644 index 0000000000000000000000000000000000000000..881359ae0e4a05f297b96d91eae5ea2a66956863 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01806.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 402.4328555680004, + "exc_gmax_scale": 1.6817928305074292, + "generator": { + "allen_model_id": 497233049, + "allen_specimen_id": 471129934, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 1.6817928305074292, + "fit_parameters_sha256": "62396e011e3ececc3489fa2882ababebeb99fef5aa12cdcd3f2054023fb6b443", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "a810d5ae22263cfa8c9234ce3470eaa26d126a726f3c38d60a6dc6745ba89af5", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 259, + "mean": 259.0, + "min": 259 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_471129934", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_471129934/model", + "samples": 2, + "shard_index": 1806, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01806.npz b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01806.npz new file mode 100644 index 0000000000000000000000000000000000000000..4249bc9f6c5b44140ea528984adbac7ae7295835 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01806.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c1c09b9e0b1053d3c7609e0a42ef11fcc6631ef1c7b1db7a1f0e958d0bbc386c +size 1435006 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01807.json b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01807.json new file mode 100644 index 0000000000000000000000000000000000000000..d5c34e790c6cb2205f12666cf5bdabfc88d7d2ad --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01807.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 399.49228555599984, + "exc_gmax_scale": 1.6817928305074292, + "generator": { + "allen_model_id": 497233049, + "allen_specimen_id": 471129934, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 1.6817928305074292, + "fit_parameters_sha256": "62396e011e3ececc3489fa2882ababebeb99fef5aa12cdcd3f2054023fb6b443", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "a810d5ae22263cfa8c9234ce3470eaa26d126a726f3c38d60a6dc6745ba89af5", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 259, + "mean": 259.0, + "min": 259 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_471129934", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_471129934/model", + "samples": 2, + "shard_index": 1807, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01807.npz b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01807.npz new file mode 100644 index 0000000000000000000000000000000000000000..ba9ad5977e5dcae91be60b50a8b53e39b0b15f37 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01807.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:0021980b62086d539d28282189630f5005153397cd98c1a8c868cf1bd8fe472f +size 1383820 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01808.json b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01808.json new file mode 100644 index 0000000000000000000000000000000000000000..6cc266bb1a32cc83a600c5d8ac3025f7ec8226b0 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01808.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 401.35780648999935, + "exc_gmax_scale": 1.6817928305074292, + "generator": { + "allen_model_id": 497233049, + "allen_specimen_id": 471129934, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 1.6817928305074292, + "fit_parameters_sha256": "62396e011e3ececc3489fa2882ababebeb99fef5aa12cdcd3f2054023fb6b443", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "a810d5ae22263cfa8c9234ce3470eaa26d126a726f3c38d60a6dc6745ba89af5", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 259, + "mean": 259.0, + "min": 259 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_471129934", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_471129934/model", + "samples": 2, + "shard_index": 1808, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01808.npz b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01808.npz new file mode 100644 index 0000000000000000000000000000000000000000..7f74e2e7d269e42d6a3f1e537b6f2b49880aea11 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01808.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:77dd0a0772c7a94c6a6fcb86e320de6e59c4afb92ce3068b85091f56e5b5d0f1 +size 1384717 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01809.json b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01809.json new file mode 100644 index 0000000000000000000000000000000000000000..1963f014fcdcb3e01b53f068f2e8eea25569bc53 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01809.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 401.1823480460007, + "exc_gmax_scale": 1.6817928305074292, + "generator": { + "allen_model_id": 497233049, + "allen_specimen_id": 471129934, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 1.6817928305074292, + "fit_parameters_sha256": "62396e011e3ececc3489fa2882ababebeb99fef5aa12cdcd3f2054023fb6b443", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "a810d5ae22263cfa8c9234ce3470eaa26d126a726f3c38d60a6dc6745ba89af5", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 259, + "mean": 259.0, + "min": 259 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_471129934", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_471129934/model", + "samples": 2, + "shard_index": 1809, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01809.npz b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01809.npz new file mode 100644 index 0000000000000000000000000000000000000000..b0e583dfcbbcdae565ff6d46e92393e37fbdd2eb --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01809.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:932ca5b3bd48e211282b66627b513c21b018eb729abd9cca78a3e9d02124bea6 +size 1462878 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01810.json b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01810.json new file mode 100644 index 0000000000000000000000000000000000000000..89e192fca9ecdf6a9b9c6799c9c5331ae5b49542 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01810.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 398.2365151339982, + "exc_gmax_scale": 1.6817928305074292, + "generator": { + "allen_model_id": 497233049, + "allen_specimen_id": 471129934, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 1.6817928305074292, + "fit_parameters_sha256": "62396e011e3ececc3489fa2882ababebeb99fef5aa12cdcd3f2054023fb6b443", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "a810d5ae22263cfa8c9234ce3470eaa26d126a726f3c38d60a6dc6745ba89af5", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 259, + "mean": 259.0, + "min": 259 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_471129934", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_471129934/model", + "samples": 2, + "shard_index": 1810, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01810.npz b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01810.npz new file mode 100644 index 0000000000000000000000000000000000000000..4c407763312bbd1ef097ea16511cdc4fead5115e --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01810.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:92617602dc395134fe730231297c26d00b8400fb4237d035e27c143aac20f797 +size 1439535 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01811.json b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01811.json new file mode 100644 index 0000000000000000000000000000000000000000..4f5954e811a2d5f3e6d0142c39043b13ece8d384 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01811.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 395.88733440000215, + "exc_gmax_scale": 1.6817928305074292, + "generator": { + "allen_model_id": 497233049, + "allen_specimen_id": 471129934, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 1.6817928305074292, + "fit_parameters_sha256": "62396e011e3ececc3489fa2882ababebeb99fef5aa12cdcd3f2054023fb6b443", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "a810d5ae22263cfa8c9234ce3470eaa26d126a726f3c38d60a6dc6745ba89af5", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 259, + "mean": 259.0, + "min": 259 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_471129934", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_471129934/model", + "samples": 2, + "shard_index": 1811, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01811.npz b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01811.npz new file mode 100644 index 0000000000000000000000000000000000000000..92a27982f69a8dc42f7fdb7ab5bcec5320b8ce76 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01811.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:504e459fb6f904fa340b6ec0fab266c4f716c01b6c9666b6d6934e5fcef49b20 +size 1403396 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01812.json b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01812.json new file mode 100644 index 0000000000000000000000000000000000000000..865e6b8d399630b99526646f2bceef4039d05097 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01812.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 403.1228849359977, + "exc_gmax_scale": 1.6817928305074292, + "generator": { + "allen_model_id": 497233049, + "allen_specimen_id": 471129934, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 1.6817928305074292, + "fit_parameters_sha256": "62396e011e3ececc3489fa2882ababebeb99fef5aa12cdcd3f2054023fb6b443", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "a810d5ae22263cfa8c9234ce3470eaa26d126a726f3c38d60a6dc6745ba89af5", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 259, + "mean": 259.0, + "min": 259 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_471129934", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_471129934/model", + "samples": 2, + "shard_index": 1812, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01812.npz b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01812.npz new file mode 100644 index 0000000000000000000000000000000000000000..880161f0ed015d64faa4b0107966a5074de754d1 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01812.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a6facc24ac79391ac833146588edb9d7001ab5ded535d24a344e15abccc8cfb6 +size 1387367 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01813.json b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01813.json new file mode 100644 index 0000000000000000000000000000000000000000..a372ce99ee8d84a199e5de54f29a8efc40c302bd --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01813.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 404.66028947499944, + "exc_gmax_scale": 1.6817928305074292, + "generator": { + "allen_model_id": 497233049, + "allen_specimen_id": 471129934, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 1.6817928305074292, + "fit_parameters_sha256": "62396e011e3ececc3489fa2882ababebeb99fef5aa12cdcd3f2054023fb6b443", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "a810d5ae22263cfa8c9234ce3470eaa26d126a726f3c38d60a6dc6745ba89af5", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 259, + "mean": 259.0, + "min": 259 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_471129934", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_471129934/model", + "samples": 2, + "shard_index": 1813, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01813.npz b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01813.npz new file mode 100644 index 0000000000000000000000000000000000000000..2e9a1b848f2eb319d02645a2c63c271911fa912f --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01813.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:827ca903967261acc2fd2cd6ee0011fc07364eff643a7b7c9821ace723dc4d40 +size 1452955 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01814.json b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01814.json new file mode 100644 index 0000000000000000000000000000000000000000..61803e54d67042bc94f1b9db444240fecd0dd811 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01814.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 400.0214787130026, + "exc_gmax_scale": 1.6817928305074292, + "generator": { + "allen_model_id": 497233049, + "allen_specimen_id": 471129934, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 1.6817928305074292, + "fit_parameters_sha256": "62396e011e3ececc3489fa2882ababebeb99fef5aa12cdcd3f2054023fb6b443", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "a810d5ae22263cfa8c9234ce3470eaa26d126a726f3c38d60a6dc6745ba89af5", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 259, + "mean": 259.0, + "min": 259 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_471129934", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_471129934/model", + "samples": 2, + "shard_index": 1814, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01814.npz b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01814.npz new file mode 100644 index 0000000000000000000000000000000000000000..07357ac62415a4b85501652064b53f11305e3c7f --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01814.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:6e6207e8de969833ffcebdae5c3312df456c8d9644bd2e9d8c1aaab863e1cb2a +size 1395470 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01815.json b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01815.json new file mode 100644 index 0000000000000000000000000000000000000000..a78c34fa4689034e8892683c0c0c3354dde5765a --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01815.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 400.6771039259984, + "exc_gmax_scale": 1.6817928305074292, + "generator": { + "allen_model_id": 497233049, + "allen_specimen_id": 471129934, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 1.6817928305074292, + "fit_parameters_sha256": "62396e011e3ececc3489fa2882ababebeb99fef5aa12cdcd3f2054023fb6b443", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "a810d5ae22263cfa8c9234ce3470eaa26d126a726f3c38d60a6dc6745ba89af5", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 259, + "mean": 259.0, + "min": 259 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_471129934", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_471129934/model", + "samples": 2, + "shard_index": 1815, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01815.npz b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01815.npz new file mode 100644 index 0000000000000000000000000000000000000000..4424d91a1fdc99c8fd0708e78e4b69bad5da1979 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_471129934_intervention_pair_01815.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:0cbb02a53a5ed0b7281ca12af64c5a320ab19992a8d0930fdb4552c720e8b739 +size 1444221 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_473601979_intervention_pair_05065.json b/minimal/interventions/temporal_jitter_j1/specimen_473601979_intervention_pair_05065.json new file mode 100644 index 0000000000000000000000000000000000000000..53c12146fdc8917a7734924c64addbd796e0d44d --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_473601979_intervention_pair_05065.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 157.4803199859998, + "exc_gmax_scale": 0.26106844560685344, + "generator": { + "allen_model_id": 497232946, + "allen_specimen_id": 473601979, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.26106844560685344, + "fit_parameters_sha256": "7316d7b29be31dc33272fde6c92d71a5ed60a384f14afcc0afe2939e031073ff", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "bf742a9d6941b0c39a1ddcbcebcd79f053120e55c15757225e7e88263d6c709b", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 96, + "mean": 96.0, + "min": 96 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_473601979", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_473601979/model", + "samples": 2, + "shard_index": 5065, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_473601979_intervention_pair_05065.npz b/minimal/interventions/temporal_jitter_j1/specimen_473601979_intervention_pair_05065.npz new file mode 100644 index 0000000000000000000000000000000000000000..337c6ee6f1dd28f5cfc8274d5212c71d7e24fb67 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_473601979_intervention_pair_05065.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:4f4213652d5316c10812d9266b5d95e4635215cb1651fa25a9abf08ed6203dfd +size 1447454 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_473601979_intervention_pair_05066.json b/minimal/interventions/temporal_jitter_j1/specimen_473601979_intervention_pair_05066.json new file mode 100644 index 0000000000000000000000000000000000000000..0784140f19581459737144507a497e2c9c2abf00 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_473601979_intervention_pair_05066.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 157.91082371599987, + "exc_gmax_scale": 0.26106844560685344, + "generator": { + "allen_model_id": 497232946, + "allen_specimen_id": 473601979, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.26106844560685344, + "fit_parameters_sha256": "7316d7b29be31dc33272fde6c92d71a5ed60a384f14afcc0afe2939e031073ff", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "bf742a9d6941b0c39a1ddcbcebcd79f053120e55c15757225e7e88263d6c709b", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 96, + "mean": 96.0, + "min": 96 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_473601979", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_473601979/model", + "samples": 2, + "shard_index": 5066, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_473601979_intervention_pair_05066.npz b/minimal/interventions/temporal_jitter_j1/specimen_473601979_intervention_pair_05066.npz new file mode 100644 index 0000000000000000000000000000000000000000..25b4b9bb9fca449909b04146c8fc55d6249442b0 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_473601979_intervention_pair_05066.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:3a1efab0b2e4f2858e705366ca3d8e3a1ff20711d92f6b8183aa335a73dc09c4 +size 1369991 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_473601979_intervention_pair_05067.json b/minimal/interventions/temporal_jitter_j1/specimen_473601979_intervention_pair_05067.json new file mode 100644 index 0000000000000000000000000000000000000000..06c8496521c083c8070ce5ece703aaf81a0832b8 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_473601979_intervention_pair_05067.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 161.45176890400035, + "exc_gmax_scale": 0.26106844560685344, + "generator": { + "allen_model_id": 497232946, + "allen_specimen_id": 473601979, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.26106844560685344, + "fit_parameters_sha256": "7316d7b29be31dc33272fde6c92d71a5ed60a384f14afcc0afe2939e031073ff", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "bf742a9d6941b0c39a1ddcbcebcd79f053120e55c15757225e7e88263d6c709b", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 96, + "mean": 96.0, + "min": 96 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_473601979", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_473601979/model", + "samples": 2, + "shard_index": 5067, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_473601979_intervention_pair_05067.npz b/minimal/interventions/temporal_jitter_j1/specimen_473601979_intervention_pair_05067.npz new file mode 100644 index 0000000000000000000000000000000000000000..02b6ee62d34e1c279c1991f6179ba25e4dd8417f --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_473601979_intervention_pair_05067.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a4c23472d6222c75f231e93783104427a37bd36b5eca0d5276fedd978a698d31 +size 1412711 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_473601979_intervention_pair_05068.json b/minimal/interventions/temporal_jitter_j1/specimen_473601979_intervention_pair_05068.json new file mode 100644 index 0000000000000000000000000000000000000000..381bdd7ebdfeab42a165185bae70e8269e90308c --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_473601979_intervention_pair_05068.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 160.0037716629995, + "exc_gmax_scale": 0.26106844560685344, + "generator": { + "allen_model_id": 497232946, + "allen_specimen_id": 473601979, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.26106844560685344, + "fit_parameters_sha256": "7316d7b29be31dc33272fde6c92d71a5ed60a384f14afcc0afe2939e031073ff", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "bf742a9d6941b0c39a1ddcbcebcd79f053120e55c15757225e7e88263d6c709b", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 96, + "mean": 96.0, + "min": 96 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_473601979", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_473601979/model", + "samples": 2, + "shard_index": 5068, + "teacher_balance_label": "axobench_ei_balanced" +} diff --git a/minimal/interventions/temporal_jitter_j1/specimen_473601979_intervention_pair_05068.npz b/minimal/interventions/temporal_jitter_j1/specimen_473601979_intervention_pair_05068.npz new file mode 100644 index 0000000000000000000000000000000000000000..0cd04dbbcdf880f4f4ddca405a6ea6b7c7161d5f --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_473601979_intervention_pair_05068.npz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b710eb05746c3c7220b56cfd228c7f7af7be3319c7010bb56f550c0ed4fa5bae +size 1475962 diff --git a/minimal/interventions/temporal_jitter_j1/specimen_473601979_intervention_pair_05069.json b/minimal/interventions/temporal_jitter_j1/specimen_473601979_intervention_pair_05069.json new file mode 100644 index 0000000000000000000000000000000000000000..d46065a8bf4cf2e8a2f62e646ccc91dc02ff8f04 --- /dev/null +++ b/minimal/interventions/temporal_jitter_j1/specimen_473601979_intervention_pair_05069.json @@ -0,0 +1,107 @@ +{ + "backend": "neuron", + "coreneuron_gpu": false, + "duration_ms": 6000, + "elapsed_seconds": 157.9666803120017, + "exc_gmax_scale": 0.26106844560685344, + "generator": { + "allen_model_id": 497232946, + "allen_specimen_id": 473601979, + "axon": "Allen truncated: two 30 um sections with the diameters of the reconstruction's first 60 um", + "backend": "neuron", + "biophysics_hoc_sha256": null, + "celsius": 34.0, + "code_revision": { + "commit": "112df5adf80562b47e92903f188426a5db59c0ab", + "dirty": false + }, + "data_version": "v2", + "dt_ms": 0.025, + "exc_gmax_scale": 0.26106844560685344, + "fit_parameters_sha256": "7316d7b29be31dc33272fde6c92d71a5ed60a384f14afcc0afe2939e031073ff", + "inh_gmax_scale": 1.0, + "input_routing": "all_sites_by_type", + "input_sampler": "axobench sample_neuronio_inputs (NeuronIO sampler reimplementation)", + "integrator": "fixed_step", + "junction_potential_mv": -14.0, + "mechanism_files": [ + "CaDynamics.mod", + "Ca_HVA.mod", + "Ca_LVA.mod", + "DetAMPANMDA.mod", + "DetGABA.mod", + "Ih.mod", + "Im.mod", + "Im_v2.mod", + "K_P.mod", + "K_T.mod", + "Kd.mod", + "Kv2like.mod", + "Kv3_1.mod", + "NaTa.mod", + "NaTs.mod", + "NaV.mod", + "Nap.mod", + "SK.mod" + ], + "mechanisms_sha256": "837c71a722378780c2dd2e8a223315c230da94b468313dd6e515aed0e3034042", + "morphology_sha256": "bf742a9d6941b0c39a1ddcbcebcd79f053120e55c15757225e7e88263d6c709b", + "neuron_version": "9.0.2", + "nseg_policy": "allen_fit", + "soma_samples_per_ms": 4, + "spike_label_rule": "local maxima > -25 mV on the 8 samples/ms trace, labelled floor(t)", + "synapse_delay_ms": 0.0, + "synapse_objects": "one DetAMPANMDA and one DetGABA per segment, driven by every site routed to it (exact: linear synapse states, shared time constants and gmax)", + "synapses": "DetAMPANMDA/DetGABA (deterministic ProbAMPANMDA2/ProbUDFsyn2 at Use=1, Dep=0, Fac=0)", + "teacher": "allen_all_active", + "template_hoc_sha256": null, + "v_init_mv": -90.0 + }, + "inh_gmax_scale": 1.0, + "input_event_policy": "source_neuronio_sampler_unmodified", + "input_routing": { + "all_traces_identical": true, + "defensibility_note": "Every original signed source-site contact remains a distinct synapse. Contacts are placed on the nearest same-compartment target segment by normalized arclength; source compartments missing from the target morphology fall back to all dendrites.", + "duplicated_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "morphology_segments": { + "max": 96, + "mean": 96.0, + "min": 96 + }, + "n_traces": 2, + "policy": "source_site_preserving_normalized_arclength", + "source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "status": "recorded", + "unique_source_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + }, + "unused_source_sites_per_sign": { + "max": 0, + "mean": 0.0, + "min": 0 + }, + "used_sites_per_sign": { + "max": 639, + "mean": 639.0, + "min": 639 + } + }, + "intervention": "temporal_jitter", + "intervention_dose": 1.0, + "kind": "intervention", + "morphology_id": "specimen_473601979", + "morphology_path": "${AXOBENCH_ALLEN_ALL_ACTIVE_ROOT}/specimen_473601979/model", + "samples": 2, + "shard_index": 5069, + "teacher_balance_label": "axobench_ei_balanced" +}