Datasets:
Update README.md
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README.md
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@@ -191,20 +191,73 @@ BALM-Benchmark is a comprehensive benchmark suite that combines multiple seminal
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<!-- Provide a longer summary of what this dataset is. -->
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Each dataset contains:
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- **Column A**
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- **Column B**
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- **Column C**
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- **...**
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- **Dataset Repository:** https://huggingface.co/datasets/BALM/BALM-benchmark
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- **Code Repository:** https://github.com/meyresearch/BALM
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- **Paper:** TBA
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- **Language(s) (NLP):** English
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- **License:** CC-BY-4.0
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### Dataset Sources
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- **BindingDB_filtered**:
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- **CATS**:
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<!-- Provide a longer summary of what this dataset is. -->
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- **Dataset Repository:** https://huggingface.co/datasets/BALM/BALM-benchmark
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- **Code Repository:** https://github.com/meyresearch/BALM
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- **Paper:** TBA
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- **Language(s) (NLP):** English
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- **License:** CC-BY-4.0
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### Dataset Columns
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- **BindingDB_filtered**:
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- **Index** (`string`): Index of the ligand-target pair.
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- **Drug_ID** (`string`): Index of the ligand from the TDC.
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- **Drug** (`string`): Ligand sequence (i.e., SMILES string).
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- **Target_ID** (`string`): Index of the target protein from the TDC.
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- **Target** (`string`): Protein sequence (i.e., sequence of amino acids).
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- **Y** (`float32`): binding affinity value in pKd.
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- **CATS**:
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- **Index** (`string`): Index of the ligand-target pair.
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- **Drug** (`string`): Ligand sequence (i.e., SMILES string).
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- **IC50** (`float32`): binding affinity value in IC50.
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- **Target** (`string`): Protein sequence (i.e., sequence of amino acids).
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- **Y** (`float32`): binding affinity value in pKd.
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- **HIF2A**:
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- **Index** (`string`): Index of the ligand-target pair.
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- **Y** (`float32`): binding affinity value in pKd.
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- **Drug** (`string`): Ligand sequence (i.e., SMILES string).
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- **Target** (`string`): Protein sequence (i.e., sequence of amino acids).
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- **HSP90**:
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- **Index** (`string`): Index of the ligand-target pair.
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- **Drug** (`string`): Ligand sequence (i.e., SMILES string).
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- **IC50 (nM)** (`float32`): binding affinity value in IC50.
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- **Target** (`string`): Protein sequence (i.e., sequence of amino acids).
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- **Y** (`float32`): binding affinity value in pKd.
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- **LeakyPDB**:
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- **Index** (`string`): Index of the ligand-target pair.
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- **header** (`string`): TBA
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- **smiles** (`string`): TBA
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- **category** (`string`): TBA
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- **seq** (`string`): TBA
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- **resolution** (`float32`): TBA
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- **date** (`string`): TBA
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- **type** (`string`): TBA
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- **new_split** (`string`): TBA
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- **CL1** (`bool`): TBA
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- **CL2** (`bool`): TBA
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- **CL3** (`bool`): TBA
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- **remove_for_balancing_val** (`bool`): TBA
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- **kd/ki** (`string`): TBA
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- **value** (`float32`): TBA
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- **covalent** (`bool`): TBA
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- **MCL1**:
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- **Index** (`string`): Index of the ligand-target pair.
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- **Y** (`float32`): binding affinity value in pKd.
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- **Drug** (`string`): Ligand sequence (i.e., SMILES string).
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- **Target** (`string`): Protein sequence (i.e., sequence of amino acids).
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- **Mpro**:
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- **Index** (`string`): Index of the ligand-target pair.
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- **Y** (`float32`): binding affinity value in pKd.
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- **Drug** (`string`): Ligand sequence (i.e., SMILES string).
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- **Target** (`string`): Protein sequence (i.e., sequence of amino acids).
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- **SYK**:
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- **Index** (`string`): Index of the ligand-target pair.
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- **Y** (`float32`): binding affinity value in pKd.
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- **Drug** (`string`): Ligand sequence (i.e., SMILES string).
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- **Target** (`string`): Protein sequence (i.e., sequence of amino acids).
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### Dataset Sources
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- **BindingDB_filtered**:
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- **CATS**:
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