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Benchmark_Dataset-Genomic_element_classification

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  1. .gitattributes +1 -0
  2. Human_genomic_element_classification/element2label.txt +1 -1
  3. Mouse_genomic_element_classification/element2label.txt +1 -1
  4. Multi_species_exon_classification/species2label.txt +1 -1
  5. Multi_species_five_prime_utr_classification/eval.jsonl +0 -0
  6. Multi_species_five_prime_utr_classification/species2label.txt +7 -0
  7. Multi_species_five_prime_utr_classification/test.jsonl +0 -0
  8. Multi_species_five_prime_utr_classification/train.jsonl +0 -0
  9. Multi_species_three_prime_utr_classification/eval.jsonl +0 -0
  10. Multi_species_three_prime_utr_classification/species2label.txt +7 -0
  11. Multi_species_three_prime_utr_classification/test.jsonl +0 -0
  12. Multi_species_three_prime_utr_classification/train.jsonl +3 -0
  13. README.md +0 -3
.gitattributes CHANGED
@@ -59,3 +59,4 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
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  *.webm filter=lfs diff=lfs merge=lfs -text
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  Multi_species_exon_classification/test.jsonl filter=lfs diff=lfs merge=lfs -text
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  Multi_species_exon_classification/train.jsonl filter=lfs diff=lfs merge=lfs -text
 
 
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  *.webm filter=lfs diff=lfs merge=lfs -text
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  Multi_species_exon_classification/test.jsonl filter=lfs diff=lfs merge=lfs -text
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+ Multi_species_three_prime_utr_classification/train.jsonl filter=lfs diff=lfs merge=lfs -text
Human_genomic_element_classification/element2label.txt CHANGED
@@ -2,4 +2,4 @@ element,label
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  3' UTR,0
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  5' UTR,1
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  Exon,2
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- Protein-coding gene,3
 
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  3' UTR,0
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  5' UTR,1
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  Exon,2
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+ Protein-coding gene,3
Mouse_genomic_element_classification/element2label.txt CHANGED
@@ -2,4 +2,4 @@ element,label
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  3' UTR,0
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  5' UTR,1
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  Exon,2
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- Protein-coding gene,3
 
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  3' UTR,0
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  5' UTR,1
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  Exon,2
5
+ Protein-coding gene,3
Multi_species_exon_classification/species2label.txt CHANGED
@@ -4,4 +4,4 @@ Worm,1
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  Chicken,2
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  Fruit Fly,3
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  Mouse,4
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- Zebrafish,5
 
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  Chicken,2
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  Fruit Fly,3
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  Mouse,4
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+ Zebrafish,5
Multi_species_five_prime_utr_classification/eval.jsonl ADDED
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Multi_species_five_prime_utr_classification/species2label.txt ADDED
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+ species,label
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+ Human,0
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+ Worm,1
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Multi_species_five_prime_utr_classification/train.jsonl ADDED
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Multi_species_three_prime_utr_classification/eval.jsonl ADDED
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Multi_species_three_prime_utr_classification/species2label.txt ADDED
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+ species,label
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+ Human,0
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+ Worm,1
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+ Chicken,2
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+ Fruit Fly,3
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+ Mouse,4
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+ Zebrafish,5
Multi_species_three_prime_utr_classification/test.jsonl ADDED
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Multi_species_three_prime_utr_classification/train.jsonl ADDED
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+ version https://git-lfs.github.com/spec/v1
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+ oid sha256:150159030121b5c237536bc8e6529b9f76681b819113d233b5ad42bfe82ae570
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+ size 10491809
README.md CHANGED
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  ---
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  license: mit
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  ---
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-
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  ## Summary
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  This dataset is constructed based on annotations from **Ensembl** Database.
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  Through a filtration pipeline, genomic element sequences—including **3' UTR, 5' UTR, Exon, and Protein-coding gene**—were extracted and integrated.
@@ -30,7 +29,6 @@ dataset = load_dataset(
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  | Human_genomic_element_classification |{seq, label} | 12,000 | 6,000 | 6,000 |1,024|
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  | Mouse_genomic_element_classification |{seq, label} | 12,000 | 6,000 | 6,000 |1,024|
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  | Multi_species_exon_classification |{seq, label} | 16,346 | 7,592 | 7,593 |1,024|
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-
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  ### Human_genomic_element_classification / Mouse_genomic_element_classification
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  | Genomic element | Label |
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  |:---------:|:-----------:|
@@ -38,7 +36,6 @@ dataset = load_dataset(
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  |5' UTR|1|
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  |Exon|2|
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  |Protein-coding gene|3|
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-
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  ### Multi_species_exon_classification
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  | Species | Label |
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  |:---------:|:-----------:|
 
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  ---
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  license: mit
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  ---
 
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  ## Summary
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  This dataset is constructed based on annotations from **Ensembl** Database.
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  Through a filtration pipeline, genomic element sequences—including **3' UTR, 5' UTR, Exon, and Protein-coding gene**—were extracted and integrated.
 
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  | Human_genomic_element_classification |{seq, label} | 12,000 | 6,000 | 6,000 |1,024|
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  | Mouse_genomic_element_classification |{seq, label} | 12,000 | 6,000 | 6,000 |1,024|
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  | Multi_species_exon_classification |{seq, label} | 16,346 | 7,592 | 7,593 |1,024|
 
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  ### Human_genomic_element_classification / Mouse_genomic_element_classification
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  | Genomic element | Label |
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  |:---------:|:-----------:|
 
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  |5' UTR|1|
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  |Exon|2|
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  |Protein-coding gene|3|
 
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  ### Multi_species_exon_classification
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  | Species | Label |
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  |:---------:|:-----------:|