Update README.md
Browse files
README.md
CHANGED
|
@@ -2,7 +2,11 @@
|
|
| 2 |
license: mit
|
| 3 |
---
|
| 4 |
## Sumary
|
| 5 |
-
This dataset provides a benchmark for evaluating the model's ability to leverage richer genetic information from longer sequences to achieve more accurate inference.
|
|
|
|
|
|
|
|
|
|
|
|
|
| 6 |
|
| 7 |
## Usage
|
| 8 |
```python
|
|
|
|
| 2 |
license: mit
|
| 3 |
---
|
| 4 |
## Sumary
|
| 5 |
+
This dataset provides a benchmark for evaluating the model's ability to leverage richer genetic information from longer sequences to achieve more accurate inference.
|
| 6 |
+
Using data from the Human Pangenome Reference Consortium (BioProject ID: PRJNA730823), we designed a population classification task focusing on African, East Asian, and European population groups.
|
| 7 |
+
From samples' VCF file and the reference genome sequence, we generated sample pseudo-sequences.
|
| 8 |
+
Based on variant site information recorded in the VCF file, we extracted a variant-dense region from chromosome 9.
|
| 9 |
+
We used three sequence lengths: **8,192 bp (8K)**, **32,768 bp (32K)**, and **131,072 bp (128K)**. An XGBoost classifier was employed to perform classification predictions for individual sequences.
|
| 10 |
|
| 11 |
## Usage
|
| 12 |
```python
|