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Browse files- .gitattributes +10 -0
- GSE280315/GSM8594567/meta.yaml +8 -0
- GSE280315/GSM8594567/metadata.json +13 -0
- GSE280315/GSM8594567/qc_panel.png +3 -0
- GSE280315/GSM8594567/scalefactors_json.json +1 -0
- GSE280315/GSM8594567/spatial.h5ad +3 -0
- GSE280315/GSM8594567/wsi.tif +3 -0
- GSE280315/GSM8594568/meta.yaml +8 -0
- GSE280315/GSM8594568/metadata.json +13 -0
- GSE280315/GSM8594568/qc_panel.png +3 -0
- GSE280315/GSM8594568/spatial.h5ad +3 -0
- GSE280315/GSM8594568/wsi.tif +3 -0
- GSE280315/GSM8594569/meta.yaml +8 -0
- GSE280315/GSM8594569/metadata.json +13 -0
- GSE280315/GSM8594569/qc_panel.png +3 -0
- GSE280315/GSM8594569/spatial.h5ad +3 -0
- GSE280315/GSM8594569/wsi.tif +3 -0
- GSE280315/GSM8594570/meta.yaml +8 -0
- GSE280315/GSM8594570/metadata.json +13 -0
- GSE280315/GSM8594570/qc_panel.png +3 -0
- GSE280315/GSM8594570/spatial.h5ad +3 -0
- GSE280315/GSM8594570/wsi.tif +3 -0
- GSE280315/GSM8594571/meta.yaml +8 -0
- GSE280315/GSM8594571/metadata.json +13 -0
- GSE280315/GSM8594571/qc_panel.png +3 -0
- GSE280315/GSM8594571/spatial.h5ad +3 -0
- GSE280315/GSM8594571/wsi.tif +3 -0
.gitattributes
CHANGED
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@@ -512,3 +512,13 @@ GSE275131/GSM8471251/spatial.h5ad filter=lfs diff=lfs merge=lfs -text
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GSE275131/GSM8471251/wsi.tif filter=lfs diff=lfs merge=lfs -text
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GSE275131/GSM8471252/spatial.h5ad filter=lfs diff=lfs merge=lfs -text
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GSE275131/GSM8471252/wsi.tif filter=lfs diff=lfs merge=lfs -text
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GSE275131/GSM8471251/wsi.tif filter=lfs diff=lfs merge=lfs -text
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GSE275131/GSM8471252/spatial.h5ad filter=lfs diff=lfs merge=lfs -text
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GSE275131/GSM8471252/wsi.tif filter=lfs diff=lfs merge=lfs -text
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GSE280315/GSM8594567/spatial.h5ad filter=lfs diff=lfs merge=lfs -text
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GSE280315/GSM8594567/wsi.tif filter=lfs diff=lfs merge=lfs -text
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GSE280315/GSM8594568/spatial.h5ad filter=lfs diff=lfs merge=lfs -text
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GSE280315/GSM8594568/wsi.tif filter=lfs diff=lfs merge=lfs -text
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GSE280315/GSM8594569/spatial.h5ad filter=lfs diff=lfs merge=lfs -text
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GSE280315/GSM8594569/wsi.tif filter=lfs diff=lfs merge=lfs -text
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GSE280315/GSM8594570/spatial.h5ad filter=lfs diff=lfs merge=lfs -text
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GSE280315/GSM8594570/wsi.tif filter=lfs diff=lfs merge=lfs -text
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GSE280315/GSM8594571/spatial.h5ad filter=lfs diff=lfs merge=lfs -text
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GSE280315/GSM8594571/wsi.tif filter=lfs diff=lfs merge=lfs -text
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GSE280315/GSM8594567/meta.yaml
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sample_id: Johnson_2025_VisiumHD_CRC_P1CRC
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original_id: Johnson_2025_VisiumHD_CRC_P1CRC
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source_dataset: Johnson
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species: Unknown
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organ: Unknown
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disease_condition: Unknown
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platform: Visium HD
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pixel_scale: 1.0
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GSE280315/GSM8594567/metadata.json
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{
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"organism": "Homo sapiens",
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"tissue": "Colon",
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"disease": "Colorectal Cancer",
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"sex": "Unknown",
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"age": "Unknown",
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"technology": "Visium",
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"stain_type": "H&E",
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"publication_doi": "40473992",
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"repository_id": "GEO (GSM8594567)",
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"gsm_id": "GSM8594567",
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"geo_title": "P1 Human Colon Cancer"
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}
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GSE280315/GSM8594567/qc_panel.png
ADDED
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Git LFS Details
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GSE280315/GSM8594567/scalefactors_json.json
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{"spot_diameter_fullres": 29.217534913982778, "bin_size_um": 8.0, "microns_per_pixel": 0.27380817798463214, "regist_target_img_scalef": 0.084381066, "tissue_lowres_scalef": 0.008438107, "fiducial_diameter_fullres": 1205.2233152017895, "tissue_hires_scalef": 0.084381066}
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GSE280315/GSM8594567/spatial.h5ad
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version https://git-lfs.github.com/spec/v1
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oid sha256:0aecb84918802d8548d9292c6da8c2734554a9f7bc00d66ad0f8f540c53a87d7
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| 3 |
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size 725928912
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GSE280315/GSM8594567/wsi.tif
ADDED
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Git LFS Details
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GSE280315/GSM8594568/meta.yaml
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sample_id: Johnson_2025_VisiumHD_CRC_P2CRC
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original_id: Johnson_2025_VisiumHD_CRC_P2CRC
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source_dataset: Johnson
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species: Unknown
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organ: Unknown
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disease_condition: Unknown
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platform: Visium HD
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pixel_scale: 1.0
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GSE280315/GSM8594568/metadata.json
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{
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"organism": "Homo sapiens",
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"tissue": "Colon",
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| 4 |
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"disease": "Colorectal Cancer",
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| 5 |
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"sex": "Unknown",
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| 6 |
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"age": "Unknown",
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| 7 |
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"technology": "Visium",
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| 8 |
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"stain_type": "H&E",
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| 9 |
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"publication_doi": "40473992",
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| 10 |
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"repository_id": "GEO (GSM8594568)",
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| 11 |
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"gsm_id": "GSM8594568",
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| 12 |
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"geo_title": "P2 Human Colon Cancer."
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}
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GSE280315/GSM8594568/qc_panel.png
ADDED
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Git LFS Details
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GSE280315/GSM8594568/spatial.h5ad
ADDED
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version https://git-lfs.github.com/spec/v1
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oid sha256:98f6ccfa8340d05bdfbf3ae1addb16435b5670b0db361158aa4f076612f0adb6
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| 3 |
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size 1794408703
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GSE280315/GSM8594568/wsi.tif
ADDED
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Git LFS Details
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GSE280315/GSM8594569/meta.yaml
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sample_id: Johnson_2025_VisiumHD_CRC_P5CRC
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original_id: Johnson_2025_VisiumHD_CRC_P5CRC
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| 3 |
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source_dataset: Johnson
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| 4 |
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species: Unknown
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organ: Unknown
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| 6 |
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disease_condition: Unknown
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| 7 |
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platform: Visium HD
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pixel_scale: 1.0
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GSE280315/GSM8594569/metadata.json
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{
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"organism": "Homo sapiens",
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| 3 |
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"tissue": "Colon",
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| 4 |
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"disease": "Colorectal Cancer",
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| 5 |
+
"sex": "Unknown",
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| 6 |
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"age": "Unknown",
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| 7 |
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"technology": "Visium",
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| 8 |
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"stain_type": "H&E",
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| 9 |
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"publication_doi": "40473992",
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| 10 |
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"repository_id": "GEO (GSM8594569)",
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| 11 |
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"gsm_id": "GSM8594569",
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| 12 |
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"geo_title": "P5 Human Colon Cancer"
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| 13 |
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}
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GSE280315/GSM8594569/qc_panel.png
ADDED
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Git LFS Details
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GSE280315/GSM8594569/spatial.h5ad
ADDED
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version https://git-lfs.github.com/spec/v1
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| 2 |
+
oid sha256:9c9de3781945aa66f082c567f9e9b901febba5c8fb2c23a386ab87850cc94ecf
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| 3 |
+
size 1425524180
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GSE280315/GSM8594569/wsi.tif
ADDED
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Git LFS Details
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GSE280315/GSM8594570/meta.yaml
ADDED
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sample_id: Johnson_2025_VisiumHD_CRC_P3NAT
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| 2 |
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original_id: Johnson_2025_VisiumHD_CRC_P3NAT
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| 3 |
+
source_dataset: Johnson
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| 4 |
+
species: Unknown
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| 5 |
+
organ: Unknown
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| 6 |
+
disease_condition: Unknown
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| 7 |
+
platform: Visium HD
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| 8 |
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pixel_scale: 1.0
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GSE280315/GSM8594570/metadata.json
ADDED
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{
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"organism": "Homo sapiens",
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| 3 |
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"tissue": "Colon",
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| 4 |
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"disease": "Healthy",
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| 5 |
+
"sex": "Unknown",
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| 6 |
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"age": "Unknown",
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| 7 |
+
"technology": "Visium",
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| 8 |
+
"stain_type": "H&E",
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| 9 |
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"publication_doi": "40473992",
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| 10 |
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"repository_id": "GEO (GSM8594570)",
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| 11 |
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"gsm_id": "GSM8594570",
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| 12 |
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"geo_title": "P3 Human Colon Normal Adjacent"
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| 13 |
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}
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GSE280315/GSM8594570/qc_panel.png
ADDED
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Git LFS Details
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GSE280315/GSM8594570/spatial.h5ad
ADDED
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@@ -0,0 +1,3 @@
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version https://git-lfs.github.com/spec/v1
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+
oid sha256:668d3ddfaa71d1732c51198ff2d4df896a1131379211ead75d27deb6a5acb828
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| 3 |
+
size 555142564
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GSE280315/GSM8594570/wsi.tif
ADDED
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Git LFS Details
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GSE280315/GSM8594571/meta.yaml
ADDED
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sample_id: Johnson_2025_VisiumHD_CRC_P5NAT
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| 2 |
+
original_id: Johnson_2025_VisiumHD_CRC_P5NAT
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| 3 |
+
source_dataset: Johnson
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| 4 |
+
species: Unknown
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| 5 |
+
organ: Unknown
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| 6 |
+
disease_condition: Unknown
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| 7 |
+
platform: Visium HD
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| 8 |
+
pixel_scale: 1.0
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GSE280315/GSM8594571/metadata.json
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{
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"organism": "Homo sapiens",
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| 3 |
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"tissue": "Colon",
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| 4 |
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"disease": "Healthy",
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| 5 |
+
"sex": "Unknown",
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| 6 |
+
"age": "Unknown",
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| 7 |
+
"technology": "Visium",
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| 8 |
+
"stain_type": "H&E",
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| 9 |
+
"publication_doi": "40473992",
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| 10 |
+
"repository_id": "GEO (GSM8594571)",
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| 11 |
+
"gsm_id": "GSM8594571",
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| 12 |
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"geo_title": "P5 Human Colon Normal Adjacent"
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| 13 |
+
}
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GSE280315/GSM8594571/qc_panel.png
ADDED
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Git LFS Details
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GSE280315/GSM8594571/spatial.h5ad
ADDED
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version https://git-lfs.github.com/spec/v1
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| 2 |
+
oid sha256:f9ff9c2ecb93d92759dd5fdb8d765158542f55be844259bd13f41e43fc1b9f3b
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| 3 |
+
size 822050075
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GSE280315/GSM8594571/wsi.tif
ADDED
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Git LFS Details
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