Biogod commited on
Commit
9e333ca
·
verified ·
1 Parent(s): 4db6741

Upload folder using huggingface_hub

Browse files
.gitattributes CHANGED
@@ -512,3 +512,13 @@ GSE275131/GSM8471251/spatial.h5ad filter=lfs diff=lfs merge=lfs -text
512
  GSE275131/GSM8471251/wsi.tif filter=lfs diff=lfs merge=lfs -text
513
  GSE275131/GSM8471252/spatial.h5ad filter=lfs diff=lfs merge=lfs -text
514
  GSE275131/GSM8471252/wsi.tif filter=lfs diff=lfs merge=lfs -text
 
 
 
 
 
 
 
 
 
 
 
512
  GSE275131/GSM8471251/wsi.tif filter=lfs diff=lfs merge=lfs -text
513
  GSE275131/GSM8471252/spatial.h5ad filter=lfs diff=lfs merge=lfs -text
514
  GSE275131/GSM8471252/wsi.tif filter=lfs diff=lfs merge=lfs -text
515
+ GSE280315/GSM8594567/spatial.h5ad filter=lfs diff=lfs merge=lfs -text
516
+ GSE280315/GSM8594567/wsi.tif filter=lfs diff=lfs merge=lfs -text
517
+ GSE280315/GSM8594568/spatial.h5ad filter=lfs diff=lfs merge=lfs -text
518
+ GSE280315/GSM8594568/wsi.tif filter=lfs diff=lfs merge=lfs -text
519
+ GSE280315/GSM8594569/spatial.h5ad filter=lfs diff=lfs merge=lfs -text
520
+ GSE280315/GSM8594569/wsi.tif filter=lfs diff=lfs merge=lfs -text
521
+ GSE280315/GSM8594570/spatial.h5ad filter=lfs diff=lfs merge=lfs -text
522
+ GSE280315/GSM8594570/wsi.tif filter=lfs diff=lfs merge=lfs -text
523
+ GSE280315/GSM8594571/spatial.h5ad filter=lfs diff=lfs merge=lfs -text
524
+ GSE280315/GSM8594571/wsi.tif filter=lfs diff=lfs merge=lfs -text
GSE280315/GSM8594567/meta.yaml ADDED
@@ -0,0 +1,8 @@
 
 
 
 
 
 
 
 
 
1
+ sample_id: Johnson_2025_VisiumHD_CRC_P1CRC
2
+ original_id: Johnson_2025_VisiumHD_CRC_P1CRC
3
+ source_dataset: Johnson
4
+ species: Unknown
5
+ organ: Unknown
6
+ disease_condition: Unknown
7
+ platform: Visium HD
8
+ pixel_scale: 1.0
GSE280315/GSM8594567/metadata.json ADDED
@@ -0,0 +1,13 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "organism": "Homo sapiens",
3
+ "tissue": "Colon",
4
+ "disease": "Colorectal Cancer",
5
+ "sex": "Unknown",
6
+ "age": "Unknown",
7
+ "technology": "Visium",
8
+ "stain_type": "H&E",
9
+ "publication_doi": "40473992",
10
+ "repository_id": "GEO (GSM8594567)",
11
+ "gsm_id": "GSM8594567",
12
+ "geo_title": "P1 Human Colon Cancer"
13
+ }
GSE280315/GSM8594567/qc_panel.png ADDED

Git LFS Details

  • SHA256: afa2e7265ee7ec7ced39a9e2e92d809d338810e47f9485be9bfbc8c4d4dea746
  • Pointer size: 131 Bytes
  • Size of remote file: 873 kB
GSE280315/GSM8594567/scalefactors_json.json ADDED
@@ -0,0 +1 @@
 
 
1
+ {"spot_diameter_fullres": 29.217534913982778, "bin_size_um": 8.0, "microns_per_pixel": 0.27380817798463214, "regist_target_img_scalef": 0.084381066, "tissue_lowres_scalef": 0.008438107, "fiducial_diameter_fullres": 1205.2233152017895, "tissue_hires_scalef": 0.084381066}
GSE280315/GSM8594567/spatial.h5ad ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:0aecb84918802d8548d9292c6da8c2734554a9f7bc00d66ad0f8f540c53a87d7
3
+ size 725928912
GSE280315/GSM8594567/wsi.tif ADDED

Git LFS Details

  • SHA256: d59dc43aa3632a19a6322dd2315f682ec75dace6a8523bc58e02940cd0be3276
  • Pointer size: 131 Bytes
  • Size of remote file: 367 kB
GSE280315/GSM8594568/meta.yaml ADDED
@@ -0,0 +1,8 @@
 
 
 
 
 
 
 
 
 
1
+ sample_id: Johnson_2025_VisiumHD_CRC_P2CRC
2
+ original_id: Johnson_2025_VisiumHD_CRC_P2CRC
3
+ source_dataset: Johnson
4
+ species: Unknown
5
+ organ: Unknown
6
+ disease_condition: Unknown
7
+ platform: Visium HD
8
+ pixel_scale: 1.0
GSE280315/GSM8594568/metadata.json ADDED
@@ -0,0 +1,13 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "organism": "Homo sapiens",
3
+ "tissue": "Colon",
4
+ "disease": "Colorectal Cancer",
5
+ "sex": "Unknown",
6
+ "age": "Unknown",
7
+ "technology": "Visium",
8
+ "stain_type": "H&E",
9
+ "publication_doi": "40473992",
10
+ "repository_id": "GEO (GSM8594568)",
11
+ "gsm_id": "GSM8594568",
12
+ "geo_title": "P2 Human Colon Cancer."
13
+ }
GSE280315/GSM8594568/qc_panel.png ADDED

Git LFS Details

  • SHA256: cf1a9bf51ae0948293b806c6cdeabc23ef819792c1d23dfeda1b997c2dde6a9b
  • Pointer size: 131 Bytes
  • Size of remote file: 934 kB
GSE280315/GSM8594568/spatial.h5ad ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:98f6ccfa8340d05bdfbf3ae1addb16435b5670b0db361158aa4f076612f0adb6
3
+ size 1794408703
GSE280315/GSM8594568/wsi.tif ADDED

Git LFS Details

  • SHA256: 3f8feff2c41697de04c824703ff225737fec9c209f32ee7513bb6a4039d4ead2
  • Pointer size: 131 Bytes
  • Size of remote file: 291 kB
GSE280315/GSM8594569/meta.yaml ADDED
@@ -0,0 +1,8 @@
 
 
 
 
 
 
 
 
 
1
+ sample_id: Johnson_2025_VisiumHD_CRC_P5CRC
2
+ original_id: Johnson_2025_VisiumHD_CRC_P5CRC
3
+ source_dataset: Johnson
4
+ species: Unknown
5
+ organ: Unknown
6
+ disease_condition: Unknown
7
+ platform: Visium HD
8
+ pixel_scale: 1.0
GSE280315/GSM8594569/metadata.json ADDED
@@ -0,0 +1,13 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "organism": "Homo sapiens",
3
+ "tissue": "Colon",
4
+ "disease": "Colorectal Cancer",
5
+ "sex": "Unknown",
6
+ "age": "Unknown",
7
+ "technology": "Visium",
8
+ "stain_type": "H&E",
9
+ "publication_doi": "40473992",
10
+ "repository_id": "GEO (GSM8594569)",
11
+ "gsm_id": "GSM8594569",
12
+ "geo_title": "P5 Human Colon Cancer"
13
+ }
GSE280315/GSM8594569/qc_panel.png ADDED

Git LFS Details

  • SHA256: 42e6d7651f344b355fee0b36755e9b9b8484f9b6846293226b0b28a832b6885c
  • Pointer size: 131 Bytes
  • Size of remote file: 825 kB
GSE280315/GSM8594569/spatial.h5ad ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:9c9de3781945aa66f082c567f9e9b901febba5c8fb2c23a386ab87850cc94ecf
3
+ size 1425524180
GSE280315/GSM8594569/wsi.tif ADDED

Git LFS Details

  • SHA256: 5e6f26cee8c05a8f7a5b1a7964d50fa2fd5a916b4ba5a32304b1af7a3c770175
  • Pointer size: 131 Bytes
  • Size of remote file: 396 kB
GSE280315/GSM8594570/meta.yaml ADDED
@@ -0,0 +1,8 @@
 
 
 
 
 
 
 
 
 
1
+ sample_id: Johnson_2025_VisiumHD_CRC_P3NAT
2
+ original_id: Johnson_2025_VisiumHD_CRC_P3NAT
3
+ source_dataset: Johnson
4
+ species: Unknown
5
+ organ: Unknown
6
+ disease_condition: Unknown
7
+ platform: Visium HD
8
+ pixel_scale: 1.0
GSE280315/GSM8594570/metadata.json ADDED
@@ -0,0 +1,13 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "organism": "Homo sapiens",
3
+ "tissue": "Colon",
4
+ "disease": "Healthy",
5
+ "sex": "Unknown",
6
+ "age": "Unknown",
7
+ "technology": "Visium",
8
+ "stain_type": "H&E",
9
+ "publication_doi": "40473992",
10
+ "repository_id": "GEO (GSM8594570)",
11
+ "gsm_id": "GSM8594570",
12
+ "geo_title": "P3 Human Colon Normal Adjacent"
13
+ }
GSE280315/GSM8594570/qc_panel.png ADDED

Git LFS Details

  • SHA256: c3c3585378ab89677b08258630336a10b6fa050787b169cede4626f88a2762d1
  • Pointer size: 131 Bytes
  • Size of remote file: 764 kB
GSE280315/GSM8594570/spatial.h5ad ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:668d3ddfaa71d1732c51198ff2d4df896a1131379211ead75d27deb6a5acb828
3
+ size 555142564
GSE280315/GSM8594570/wsi.tif ADDED

Git LFS Details

  • SHA256: 14241b9e22607dddc4a7e4f7603ae4f300e762362fb5319a8fbdeba0109cca36
  • Pointer size: 131 Bytes
  • Size of remote file: 210 kB
GSE280315/GSM8594571/meta.yaml ADDED
@@ -0,0 +1,8 @@
 
 
 
 
 
 
 
 
 
1
+ sample_id: Johnson_2025_VisiumHD_CRC_P5NAT
2
+ original_id: Johnson_2025_VisiumHD_CRC_P5NAT
3
+ source_dataset: Johnson
4
+ species: Unknown
5
+ organ: Unknown
6
+ disease_condition: Unknown
7
+ platform: Visium HD
8
+ pixel_scale: 1.0
GSE280315/GSM8594571/metadata.json ADDED
@@ -0,0 +1,13 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "organism": "Homo sapiens",
3
+ "tissue": "Colon",
4
+ "disease": "Healthy",
5
+ "sex": "Unknown",
6
+ "age": "Unknown",
7
+ "technology": "Visium",
8
+ "stain_type": "H&E",
9
+ "publication_doi": "40473992",
10
+ "repository_id": "GEO (GSM8594571)",
11
+ "gsm_id": "GSM8594571",
12
+ "geo_title": "P5 Human Colon Normal Adjacent"
13
+ }
GSE280315/GSM8594571/qc_panel.png ADDED

Git LFS Details

  • SHA256: 28cd5b752d287208444d8f7dc46602143139c14029d85e61d60856231895cd13
  • Pointer size: 131 Bytes
  • Size of remote file: 726 kB
GSE280315/GSM8594571/spatial.h5ad ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:f9ff9c2ecb93d92759dd5fdb8d765158542f55be844259bd13f41e43fc1b9f3b
3
+ size 822050075
GSE280315/GSM8594571/wsi.tif ADDED

Git LFS Details

  • SHA256: 71a8f36f68a0ce5a823616e7a3f51590e6724fc0e17278a2c23eea23fea9f239
  • Pointer size: 131 Bytes
  • Size of remote file: 255 kB