| { |
| "samples": 12163, |
| "annotated": 12163, |
| "flags": { |
| "low_confidence_annotation": 3113, |
| "feature_species_differs": 47, |
| "normal_but_disease_text": 17 |
| }, |
| "changes_vs_v3": 236, |
| "dropped_short_synonym_disease_terms": 347, |
| "life_stage_source": { |
| "luna": 8172, |
| "age rule: age with unit": 1630, |
| "age rule: bare number read as years": 1351, |
| "age rule: postnatal day": 404, |
| "rule: culture or organoid (culture time is not a life stage)": 239, |
| "age rule: embryonic day": 154, |
| "age rule: age in years": 113, |
| "age rule: post-conception / gestational weeks": 64, |
| "age rule: days in an age series": 28, |
| "age rule: Carnegie stage": 4, |
| "age rule: age range midpoint": 4 |
| }, |
| "life_stage_rule_vs_luna_disagree": 624, |
| "organ": { |
| "brain": 3391, |
| "colon": 1000, |
| "lung": 939, |
| "liver": 776, |
| "spinal cord": 639, |
| "kidney": 590, |
| "skin": 489, |
| "pancreas": 488, |
| "other": 400, |
| "heart": 292, |
| "breast": 267, |
| "small intestine": 251, |
| "unknown": 185, |
| "blood vessel": 162, |
| "stomach": 162, |
| "lymph node": 160, |
| "rectum": 154, |
| "ovary": 150, |
| "skeletal muscle": 138, |
| "head and neck": 122, |
| "plant": 120, |
| "uterus": 117, |
| "spleen": 108, |
| "bone": 107, |
| "prostate": 101, |
| "placenta": 94, |
| "embryo (whole)": 93, |
| "eye": 89, |
| "bone marrow": 89, |
| "meninges": 70, |
| "peripheral nerve": 67, |
| "oral cavity": 60, |
| "bladder": 55, |
| "adrenal gland": 39, |
| "thymus": 34, |
| "peritoneum": 32, |
| "adipose tissue": 32, |
| "airway": 29, |
| "thyroid": 29, |
| "esophagus": 19, |
| "tonsil": 12, |
| "testis": 11, |
| "cartilage": 1 |
| }, |
| "sample_kind": { |
| "primary tissue": 8574, |
| "tumour tissue": 2754, |
| "metastasis": 352, |
| "organoid": 212, |
| "xenograft": 185, |
| "whole embryo/organism": 57, |
| "cell culture": 17, |
| "engineered tissue": 10, |
| "unknown": 2 |
| }, |
| "disease_status": { |
| "disease": 7023, |
| "normal": 3948, |
| "perturbation": 1125, |
| "not stated": 67 |
| }, |
| "life_stage": { |
| "not stated": 7060, |
| "adult": 2838, |
| "aged": 1182, |
| "juvenile": 330, |
| "neonatal or infant": 324, |
| "embryonic": 282, |
| "fetal": 147 |
| }, |
| "sex": { |
| "unknown": 7441, |
| "male": 2689, |
| "female": 2012, |
| "mixed": 21 |
| }, |
| "preservation": { |
| "null": 6957, |
| "FFPE": 2839, |
| "fresh frozen": 2327, |
| "fixed frozen": 40 |
| }, |
| "with_tissue_term": 11605, |
| "with_disease_term": 6479, |
| "with_pubmed": 8479, |
| "with_donor_key": 3391 |
| } |
