Metadata v2.2: corrections from human review (non-human-animal terms, culture life stage, sex from sample text, 10 manual corrections)

metadata/v2/README.md

@@ -1,6 +1,6 @@
 # SpatialDataAgent-DB sample metadata v2
 
-Schema `sda-sample-metadata-2`, version 2.1 (2026-11-05), built from release v3 (`sda-unified-20261010-v3`, 12,163 samples).
+Schema `sda-sample-metadata-2`, version 2.2 (2026-11-06), built from release v3 (`sda-unified-20261010-v3`, 12,163 samples).
 No expression, coordinate or image file changes; v2 is a new metadata table that sits next to the release.
 
 ## Files
@@ -11,27 +11,27 @@ No expression, coordinate or image file changes; v2 is a new metadata table that
 | `samples_metadata_v2.csv` | the same table; lists joined with `;`, confidence as JSON |
 | `studies_v2.csv` | one row per study (1,265): title, species, platforms, assays, organs, diseases, PubMed IDs, split |
 | `schema_v2.json` | definition of every column |
-| `changes_v2.csv` | every value that differs from a v3 column, with its basis (204 platform changes, 8 manual) |
+| `changes_v2.csv` | every value that differs from a v3 column, with its basis (204 platform changes, 32 manual corrections in 14 samples) |
 | `dropped_disease_terms.csv` | disease terms removed by the short-synonym filter (331) |
 | `qa_v2.json` | counts and consistency-flag totals |
 
 ## What is new for users
 
 - **Organ and tissue.** Each sample has an organ from a fixed list of 43 (a metastasis is placed at its site),
-  and 11,606 samples (95%) have a UBERON tissue term (279 distinct terms). The GEO text stays in `tissue_raw`.
-- **Disease.** Each sample has a `disease_status`: disease 7,021, normal 3,950, perturbation 1,125, not stated 67.
+  and 11,605 samples (95%) have a UBERON tissue term (279 distinct terms). The GEO text stays in `tissue_raw`.
+- **Disease.** Each sample has a `disease_status`: disease 7,023, normal 3,948, perturbation 1,125, not stated 67.
   "Perturbation" covers interventions that are not a named disease, such as a knockout without a disease name, a
-  drug, mechanical loading or regeneration. 6,477 samples have MONDO terms (403 distinct); a sample can have more
+  drug, mechanical loading or regeneration. 6,479 samples have MONDO terms (404 distinct); a sample can have more
   than one, for example IPMN with co-occurring PDAC. The control arm of a disease or tumour model counts as
   disease, not normal.
 - **Sample kind.** primary tissue 8,574, tumour tissue 2,754, metastasis 352, organoid 212, xenograft 185, whole
   embryo/organism 57, cell culture 17, engineered tissue 10, unknown 2.
 - **Donor.**
-  - `life_stage`: embryonic, fetal, neonatal or infant, juvenile, adult, aged, or not stated. 5,098 samples have a
-    stated stage. Where the age notation is unambiguous, the stage comes from a fixed age rule (3,745 samples);
+  - `life_stage`: embryonic, fetal, neonatal or infant, juvenile, adult, aged, or not stated. 5,103 samples have a
+    stated stage. Where the age notation is unambiguous, the stage comes from a fixed age rule (3,752 samples);
     otherwise from the model. Rule for mouse and rat: neonatal up to P21, juvenile under 6 weeks, adult under
     18 months, aged from 18 months. For human, ages in years or post-conception weeks.
-  - `sex`: male 2,639, female 1,987, mixed 19, unknown 7,518. Coded values without a key, such as 1/2, stay
+  - `sex`: male 2,689, female 2,012, mixed 21, unknown 7,441 (77 taken from the words male / female in the sample's own title or characteristics). Coded values without a key, such as 1/2, stay
     unknown.
   - `donor_key` = `<study>:<donor>`, for donor-level splits (3,391 samples).
 - **Species.**
@@ -109,7 +109,7 @@ the same source text, and every "wrong" verdict was then read by hand (Claude).
 - Vagina and pleura are not in the organ list, so those samples are "other" or "lung".
 - Disease abbreviations outside the curated list (e.g. "MN" for membranous nephropathy) give a disease status
   without a MONDO term.
-- `life_stage` is "not stated" for 7,065 samples: most GEO records give no age.
+- `life_stage` is "not stated" for 7,060 samples: most GEO records give no age.
 - 20 samples are flagged `normal_but_disease_text`: the raw disease field names a disease but the sample was
   judged normal. Most are tissue adjacent to a tumour, which is correct; the rest are unclear.
 
@@ -125,6 +125,22 @@ repository:
 
 ## Versions
 
+- **2.2** (tag `metadata-v2.2-20261106`): corrections from a human reader's review of the 200-sample pack.
+  - Rules applied to every sample:
+    - MONDO "..., non-human animal" terms are removed from human samples (16 samples).
+    - Organoids, cultures and engineered tissue get life stage "not stated", because culture time is not the donor's
+      age.
+    - Sex is read from the words male / female in the sample's own text when the extracted field is empty
+      (77 samples).
+    - Mouse and rat ages in days within an age series (e.g. "0d") are read as postnatal days.
+  - Manual corrections in 10 samples, each with its basis in `overrides_v2.csv`:
+    - actinic keratosis for the 5 GSE294844 samples (the series design says so; the sample records do not);
+    - "HD" read as healthy donor;
+    - a diverticular fistula read as diverticulitis, not IBD;
+    - Cre-only and wild-type controls set to normal;
+    - a graft with no stated site set to organ "other".
+  - New column `sex_source`.
+
 - **2.1** (tag `metadata-v2.1-20261105`): each assay now has one name (for example "Resolve Molecular Cartography"
   became "Molecular Cartography", and "Visium (FFPE)" became "Visium", since preservation is its own field).
   `um_per_unit` and `image_um_per_px` are copied exactly from the release parquet. Organ, tissue, disease, life stage and the other annotations did not change. One derived field did: `assay_type` of the 6 ISS (Cartana) samples of GSE227046 is now imaging-based (it was sequencing-based).

metadata/v2/changes_v2.csv

@@ -211,3 +211,27 @@ GSM7412887,disease_ontology,,MONDO:0004975|Alzheimer disease,manual override (wa
 GSM7412889,disease_ontology,,MONDO:0004975|Alzheimer disease,manual override (was []): as GSM7412887
 GSM7412891,disease_ontology,,MONDO:0004975|Alzheimer disease,manual override (was []): as GSM7412887
 GSM7412893,disease_ontology,,MONDO:0004975|Alzheimer disease,manual override (was []): as GSM7412887
+GSM8925216,disease_status,,disease,manual override (was normal): GSE294844 overall design: 'Samples are human actinic keratoses specimens' (sample record says only 'skin')
+GSM8925216,disease_ontology,,MONDO:0005173|actinic keratosis,manual override (was []): as above
+GSM8925216,sample_kind,,primary tissue,"manual override (was primary tissue): AK is a pre-malignant lesion, kept as primary tissue"
+GSM8925217,disease_status,,disease,manual override (was normal): GSE294844 overall design: 'Samples are human actinic keratoses specimens' (sample record says only 'skin')
+GSM8925217,disease_ontology,,MONDO:0005173|actinic keratosis,manual override (was []): as above
+GSM8925217,sample_kind,,primary tissue,"manual override (was primary tissue): AK is a pre-malignant lesion, kept as primary tissue"
+GSM8925218,disease_status,,disease,manual override (was normal): GSE294844 overall design: 'Samples are human actinic keratoses specimens' (sample record says only 'skin')
+GSM8925218,disease_ontology,,MONDO:0005173|actinic keratosis,manual override (was []): as above
+GSM8925218,sample_kind,,primary tissue,"manual override (was primary tissue): AK is a pre-malignant lesion, kept as primary tissue"
+GSM8925219,disease_status,,disease,manual override (was normal): GSE294844 overall design: 'Samples are human actinic keratoses specimens' (sample record says only 'skin')
+GSM8925219,disease_ontology,,MONDO:0005173|actinic keratosis,manual override (was []): as above
+GSM8925219,sample_kind,,primary tissue,"manual override (was primary tissue): AK is a pre-malignant lesion, kept as primary tissue"
+GSM8925221,disease_status,,disease,manual override (was normal): GSE294844 overall design: 'Samples are human actinic keratoses specimens' (sample record says only 'skin')
+GSM8925221,disease_ontology,,MONDO:0005173|actinic keratosis,manual override (was []): as above
+GSM8925221,sample_kind,,primary tissue,"manual override (was primary tissue): AK is a pre-malignant lesion, kept as primary tissue"
+GSM9769922,disease_status,,normal,"manual override (was disease): 'HD' (titles HD8HD9, HD31HD32) = healthy donor in this Stevens-Johnson study"
+GSM9769922,disease_ontology,,,manual override (was ['MONDO:0018229']): healthy donor: no disease
+GSM8674632,disease_ontology,,MONDO:0001674|diverticulitis of colon,"manual override (was ['MONDO:0005265']): fistula type DIVERTICULAR (a diverticular fistula, the comparison group of this Crohn's fistula study), not IBD"
+GSM9429459,organ,,other,"manual override (was prostate): MyC-CaP cells inoculated into mice; the site is not stated, so by the graft rule the organ is other"
+GSM9429459,tissue_ontology,,,manual override (was UBERON:0002367): graft site not stated
+GSM9232561,disease_status,,normal,"manual override (was disease): genotype 'Cre' (Kras wt/wt, p48-cre): the Cre-only control of a hereditary pancreatitis model"
+GSM9232561,disease_ontology,,,"manual override (was ['MONDO:0005003', 'MONDO:0003847']): Cre-only control"
+GSM9802661,disease_status,,normal,manual override (was disease): title 'WT_4': wild-type control of a pulmonary hypertension study
+GSM9802661,disease_ontology,,,manual override (was ['MONDO:0005149']): wild-type control

metadata/v2/dropped_disease_terms.csv

@@ -1,332 +1,348 @@
-gsm,term,name
-GSM3399307,MONDO:0000429,autosomal genetic disease
-GSM3399308,MONDO:0000429,autosomal genetic disease
-GSM3399309,MONDO:0000429,autosomal genetic disease
-GSM3399310,MONDO:0000429,autosomal genetic disease
-GSM3399311,MONDO:0000429,autosomal genetic disease
-GSM3399312,MONDO:0000429,autosomal genetic disease
-GSM3399324,MONDO:0000429,autosomal genetic disease
-GSM3399325,MONDO:0000429,autosomal genetic disease
-GSM3399327,MONDO:0000429,autosomal genetic disease
-GSM3399328,MONDO:0000429,autosomal genetic disease
-GSM3399329,MONDO:0000429,autosomal genetic disease
-GSM3399330,MONDO:0000429,autosomal genetic disease
-GSM3399331,MONDO:0000429,autosomal genetic disease
-GSM3399332,MONDO:0000429,autosomal genetic disease
-GSM3399333,MONDO:0000429,autosomal genetic disease
-GSM3399335,MONDO:0000429,autosomal genetic disease
-GSM3399336,MONDO:0000429,autosomal genetic disease
-GSM3399338,MONDO:0000429,autosomal genetic disease
-GSM3399339,MONDO:0000429,autosomal genetic disease
-GSM3399340,MONDO:0000429,autosomal genetic disease
-GSM3399341,MONDO:0000429,autosomal genetic disease
-GSM3399342,MONDO:0000429,autosomal genetic disease
-GSM3399343,MONDO:0000429,autosomal genetic disease
-GSM3399344,MONDO:0000429,autosomal genetic disease
-GSM3399345,MONDO:0000429,autosomal genetic disease
-GSM3399346,MONDO:0000429,autosomal genetic disease
-GSM3399347,MONDO:0000429,autosomal genetic disease
-GSM3399348,MONDO:0000429,autosomal genetic disease
-GSM3399349,MONDO:0000429,autosomal genetic disease
-GSM3399350,MONDO:0000429,autosomal genetic disease
-GSM3399351,MONDO:0000429,autosomal genetic disease
-GSM3399352,MONDO:0000429,autosomal genetic disease
-GSM3399354,MONDO:0000429,autosomal genetic disease
-GSM3399355,MONDO:0000429,autosomal genetic disease
-GSM3399356,MONDO:0000429,autosomal genetic disease
-GSM3399356,MONDO:0002254,syndromic disease
-GSM3399357,MONDO:0000429,autosomal genetic disease
-GSM3399358,MONDO:0000429,autosomal genetic disease
-GSM3399359,MONDO:0000429,autosomal genetic disease
-GSM3399360,MONDO:0000429,autosomal genetic disease
-GSM3399361,MONDO:0000429,autosomal genetic disease
-GSM3399362,MONDO:0000429,autosomal genetic disease
-GSM3399363,MONDO:0000429,autosomal genetic disease
-GSM3399364,MONDO:0000429,autosomal genetic disease
-GSM3399365,MONDO:0000429,autosomal genetic disease
-GSM3399366,MONDO:0000429,autosomal genetic disease
-GSM3399367,MONDO:0000429,autosomal genetic disease
-GSM3399368,MONDO:0000429,autosomal genetic disease
-GSM3399369,MONDO:0000429,autosomal genetic disease
-GSM3399370,MONDO:0000429,autosomal genetic disease
-GSM3399371,MONDO:0000429,autosomal genetic disease
-GSM3399372,MONDO:0000429,autosomal genetic disease
-GSM3399373,MONDO:0000429,autosomal genetic disease
-GSM3399374,MONDO:0000429,autosomal genetic disease
-GSM3399375,MONDO:0000429,autosomal genetic disease
-GSM3399376,MONDO:0000429,autosomal genetic disease
-GSM3399377,MONDO:0000429,autosomal genetic disease
-GSM3399378,MONDO:0000429,autosomal genetic disease
-GSM3399379,MONDO:0000429,autosomal genetic disease
-GSM3399380,MONDO:0000429,autosomal genetic disease
-GSM3399381,MONDO:0000429,autosomal genetic disease
-GSM3399382,MONDO:0000429,autosomal genetic disease
-GSM3399384,MONDO:0000429,autosomal genetic disease
-GSM3399385,MONDO:0000429,autosomal genetic disease
-GSM3399386,MONDO:0000429,autosomal genetic disease
-GSM3399387,MONDO:0000429,autosomal genetic disease
-GSM3399388,MONDO:0000429,autosomal genetic disease
-GSM3399389,MONDO:0000429,autosomal genetic disease
-GSM3399390,MONDO:0000429,autosomal genetic disease
-GSM3399391,MONDO:0000429,autosomal genetic disease
-GSM3399392,MONDO:0000429,autosomal genetic disease
-GSM3399393,MONDO:0000429,autosomal genetic disease
-GSM3399394,MONDO:0000429,autosomal genetic disease
-GSM3399395,MONDO:0000429,autosomal genetic disease
-GSM3399396,MONDO:0000429,autosomal genetic disease
-GSM3399397,MONDO:0000429,autosomal genetic disease
-GSM3399398,MONDO:0000429,autosomal genetic disease
-GSM3399399,MONDO:0000429,autosomal genetic disease
-GSM3399400,MONDO:0000429,autosomal genetic disease
-GSM3399401,MONDO:0000429,autosomal genetic disease
-GSM3399402,MONDO:0000429,autosomal genetic disease
-GSM3399403,MONDO:0000429,autosomal genetic disease
-GSM3399404,MONDO:0000429,autosomal genetic disease
-GSM3399405,MONDO:0000429,autosomal genetic disease
-GSM3399406,MONDO:0000429,autosomal genetic disease
-GSM3399407,MONDO:0000429,autosomal genetic disease
-GSM3399408,MONDO:0000429,autosomal genetic disease
-GSM5538852,MONDO:0015974,severe combined immunodeficiency
-GSM5538853,MONDO:0015974,severe combined immunodeficiency
-GSM5538854,MONDO:0015974,severe combined immunodeficiency
-GSM5538855,MONDO:0015974,severe combined immunodeficiency
-GSM5713386,MONDO:0008264,autosomal dominant medullary cystic kidney disease with or without hyperuricemia
-GSM5713387,MONDO:0008264,autosomal dominant medullary cystic kidney disease with or without hyperuricemia
-GSM5713388,MONDO:0008264,autosomal dominant medullary cystic kidney disease with or without hyperuricemia
-GSM5713389,MONDO:0008264,autosomal dominant medullary cystic kidney disease with or without hyperuricemia
-GSM5713390,MONDO:0008264,autosomal dominant medullary cystic kidney disease with or without hyperuricemia
-GSM5713396,MONDO:0008264,autosomal dominant medullary cystic kidney disease with or without hyperuricemia
-GSM5713397,MONDO:0008264,autosomal dominant medullary cystic kidney disease with or without hyperuricemia
-GSM5713398,MONDO:0008264,autosomal dominant medullary cystic kidney disease with or without hyperuricemia
-GSM5713399,MONDO:0008264,autosomal dominant medullary cystic kidney disease with or without hyperuricemia
-GSM5713400,MONDO:0008264,autosomal dominant medullary cystic kidney disease with or without hyperuricemia
-GSM5713403,MONDO:0008264,autosomal dominant medullary cystic kidney disease with or without hyperuricemia
-GSM5713404,MONDO:0008264,autosomal dominant medullary cystic kidney disease with or without hyperuricemia
-GSM5713405,MONDO:0008264,autosomal dominant medullary cystic kidney disease with or without hyperuricemia
-GSM5713406,MONDO:0008264,autosomal dominant medullary cystic kidney disease with or without hyperuricemia
-GSM5713407,MONDO:0008264,autosomal dominant medullary cystic kidney disease with or without hyperuricemia
-GSM5713408,MONDO:0008264,autosomal dominant medullary cystic kidney disease with or without hyperuricemia
-GSM5713409,MONDO:0008264,autosomal dominant medullary cystic kidney disease with or without hyperuricemia
-GSM5713410,MONDO:0008264,autosomal dominant medullary cystic kidney disease with or without hyperuricemia
-GSM5713411,MONDO:0008264,autosomal dominant medullary cystic kidney disease with or without hyperuricemia
-GSM5713412,MONDO:0008264,autosomal dominant medullary cystic kidney disease with or without hyperuricemia
-GSM5713413,MONDO:0008264,autosomal dominant medullary cystic kidney disease with or without hyperuricemia
-GSM5713414,MONDO:0008264,autosomal dominant medullary cystic kidney disease with or without hyperuricemia
-GSM5713415,MONDO:0008264,autosomal dominant medullary cystic kidney disease with or without hyperuricemia
-GSM5713416,MONDO:0008264,autosomal dominant medullary cystic kidney disease with or without hyperuricemia
-GSM6523977,MONDO:0100087,familial Alzheimer disease
-GSM6613090,MONDO:0041656,ST-elevation myocardial infarction
-GSM6631766,MONDO:0000425,X-linked disease
-GSM7585149,MONDO:0005549,renal cell adenocarcinoma
-GSM7585150,MONDO:0005549,renal cell adenocarcinoma
-GSM7585151,MONDO:0005549,renal cell adenocarcinoma
-GSM7585152,MONDO:0005549,renal cell adenocarcinoma
-GSM7585153,MONDO:0005549,renal cell adenocarcinoma
-GSM7585154,MONDO:0005549,renal cell adenocarcinoma
-GSM7585155,MONDO:0005549,renal cell adenocarcinoma
-GSM7585156,MONDO:0005549,renal cell adenocarcinoma
-GSM7567492,MONDO:0015974,severe combined immunodeficiency
-GSM7990552,MONDO:0019622,non-specific interstitial pneumonia
-GSM7990553,MONDO:0019622,non-specific interstitial pneumonia
-GSM8505462,MONDO:0017591,combined pulmonary fibrosis-emphysema syndrome
-GSM7990295,MONDO:0005093,skin disorder
-GSM8021238,MONDO:0005091,severe acute respiratory syndrome
-GSM8021239,MONDO:0005091,severe acute respiratory syndrome
-GSM8021240,MONDO:0005087,respiratory system disorder
-GSM8021241,MONDO:0005087,respiratory system disorder
-GSM8021241,MONDO:0020683,acute disease
-GSM8021242,MONDO:0005091,severe acute respiratory syndrome
-GSM8021243,MONDO:0005087,respiratory system disorder
-GSM8021243,MONDO:0020683,acute disease
-GSM8021244,MONDO:0005091,severe acute respiratory syndrome
-GSM8021245,MONDO:0005091,severe acute respiratory syndrome
-GSM8021246,MONDO:0005091,severe acute respiratory syndrome
-GSM8021247,MONDO:0005091,severe acute respiratory syndrome
-GSM8021248,MONDO:0005087,respiratory system disorder
-GSM8021249,MONDO:0005091,severe acute respiratory syndrome
-GSM8021250,MONDO:0005091,severe acute respiratory syndrome
-GSM8021251,MONDO:0005091,severe acute respiratory syndrome
-GSM8021252,MONDO:0005087,respiratory system disorder
-GSM8021253,MONDO:0005091,severe acute respiratory syndrome
-GSM8021254,MONDO:0005087,respiratory system disorder
-GSM8021255,MONDO:0005091,severe acute respiratory syndrome
-GSM8021256,MONDO:0005091,severe acute respiratory syndrome
-GSM8021257,MONDO:0005087,respiratory system disorder
-GSM8021258,MONDO:0005091,severe acute respiratory syndrome
-GSM8021259,MONDO:0005091,severe acute respiratory syndrome
-GSM8021260,MONDO:0005087,respiratory system disorder
-GSM8021261,MONDO:0005091,severe acute respiratory syndrome
-GSM8021262,MONDO:0005091,severe acute respiratory syndrome
-GSM8021263,MONDO:0005091,severe acute respiratory syndrome
-GSM8021264,MONDO:0005091,severe acute respiratory syndrome
-GSM8021265,MONDO:0005091,severe acute respiratory syndrome
-GSM8021266,MONDO:0005091,severe acute respiratory syndrome
-GSM8021267,MONDO:0005091,severe acute respiratory syndrome
-GSM8021268,MONDO:0005091,severe acute respiratory syndrome
-GSM8021269,MONDO:0005091,severe acute respiratory syndrome
-GSM8021270,MONDO:0005091,severe acute respiratory syndrome
-GSM8021271,MONDO:0005091,severe acute respiratory syndrome
-GSM8021272,MONDO:0005087,respiratory system disorder
-GSM8021272,MONDO:0020683,acute disease
-GSM8021273,MONDO:0005091,severe acute respiratory syndrome
-GSM8021274,MONDO:0005091,severe acute respiratory syndrome
-GSM8021275,MONDO:0005087,respiratory system disorder
-GSM8021276,MONDO:0005091,severe acute respiratory syndrome
-GSM8021277,MONDO:0005091,severe acute respiratory syndrome
-GSM8021278,MONDO:0005091,severe acute respiratory syndrome
-GSM8021279,MONDO:0005087,respiratory system disorder
-GSM8021279,MONDO:0020683,acute disease
-GSM8021280,MONDO:0005091,severe acute respiratory syndrome
-GSM8021281,MONDO:0005087,respiratory system disorder
-GSM8021282,MONDO:0005087,respiratory system disorder
-GSM8021283,MONDO:0005091,severe acute respiratory syndrome
-GSM8021284,MONDO:0005091,severe acute respiratory syndrome
-GSM8021285,MONDO:0005091,severe acute respiratory syndrome
-GSM8021286,MONDO:0005091,severe acute respiratory syndrome
-GSM8021287,MONDO:0005091,severe acute respiratory syndrome
-GSM8021288,MONDO:0005087,respiratory system disorder
-GSM8021288,MONDO:0020683,acute disease
-GSM8021289,MONDO:0005087,respiratory system disorder
-GSM8021290,MONDO:0005091,severe acute respiratory syndrome
-GSM8021291,MONDO:0005091,severe acute respiratory syndrome
-GSM8021292,MONDO:0005091,severe acute respiratory syndrome
-GSM8021293,MONDO:0005091,severe acute respiratory syndrome
-GSM8021294,MONDO:0005091,severe acute respiratory syndrome
-GSM8021295,MONDO:0005091,severe acute respiratory syndrome
-GSM8021296,MONDO:0005091,severe acute respiratory syndrome
-GSM8021297,MONDO:0005091,severe acute respiratory syndrome
-GSM8021298,MONDO:0005091,severe acute respiratory syndrome
-GSM8021299,MONDO:0005091,severe acute respiratory syndrome
-GSM8021300,MONDO:0005091,severe acute respiratory syndrome
-GSM8021301,MONDO:0005091,severe acute respiratory syndrome
-GSM8021302,MONDO:0005091,severe acute respiratory syndrome
-GSM8021303,MONDO:0005091,severe acute respiratory syndrome
-GSM8021304,MONDO:0005091,severe acute respiratory syndrome
-GSM8021305,MONDO:0005091,severe acute respiratory syndrome
-GSM8021306,MONDO:0005091,severe acute respiratory syndrome
-GSM8021307,MONDO:0005087,respiratory system disorder
-GSM8021307,MONDO:0020683,acute disease
-GSM8021308,MONDO:0005091,severe acute respiratory syndrome
-GSM8021309,MONDO:0005087,respiratory system disorder
-GSM8021309,MONDO:0020683,acute disease
-GSM8021310,MONDO:0005091,severe acute respiratory syndrome
-GSM8021311,MONDO:0005091,severe acute respiratory syndrome
-GSM8021312,MONDO:0005091,severe acute respiratory syndrome
-GSM8021313,MONDO:0005091,severe acute respiratory syndrome
-GSM8021314,MONDO:0005091,severe acute respiratory syndrome
-GSM8021315,MONDO:0005091,severe acute respiratory syndrome
-GSM8021316,MONDO:0005091,severe acute respiratory syndrome
-GSM8021317,MONDO:0005091,severe acute respiratory syndrome
-GSM8021318,MONDO:0005087,respiratory system disorder
-GSM8021319,MONDO:0005087,respiratory system disorder
-GSM8021320,MONDO:0005087,respiratory system disorder
-GSM8021320,MONDO:0020683,acute disease
-GSM8021321,MONDO:0005091,severe acute respiratory syndrome
-GSM8021322,MONDO:0005091,severe acute respiratory syndrome
-GSM8021323,MONDO:0005091,severe acute respiratory syndrome
-GSM8021324,MONDO:0005091,severe acute respiratory syndrome
-GSM8021325,MONDO:0005091,severe acute respiratory syndrome
-GSM8021326,MONDO:0005091,severe acute respiratory syndrome
-GSM8021327,MONDO:0005091,severe acute respiratory syndrome
-GSM8021328,MONDO:0005087,respiratory system disorder
-GSM8021329,MONDO:0005087,respiratory system disorder
-GSM8021329,MONDO:0020683,acute disease
-GSM8021330,MONDO:0005091,severe acute respiratory syndrome
-GSM8021331,MONDO:0005091,severe acute respiratory syndrome
-GSM8021332,MONDO:0005091,severe acute respiratory syndrome
-GSM8021333,MONDO:0005091,severe acute respiratory syndrome
-GSM8021334,MONDO:0005091,severe acute respiratory syndrome
-GSM8021335,MONDO:0005091,severe acute respiratory syndrome
-GSM8021336,MONDO:0005091,severe acute respiratory syndrome
-GSM8021337,MONDO:0005091,severe acute respiratory syndrome
-GSM8021338,MONDO:0005091,severe acute respiratory syndrome
-GSM8021339,MONDO:0005091,severe acute respiratory syndrome
-GSM8021340,MONDO:0005091,severe acute respiratory syndrome
-GSM8021341,MONDO:0005091,severe acute respiratory syndrome
-GSM8021342,MONDO:0005091,severe acute respiratory syndrome
-GSM8021343,MONDO:0005091,severe acute respiratory syndrome
-GSM8021344,MONDO:0005091,severe acute respiratory syndrome
-GSM8021345,MONDO:0005091,severe acute respiratory syndrome
-GSM8021346,MONDO:0005091,severe acute respiratory syndrome
-GSM8021347,MONDO:0005091,severe acute respiratory syndrome
-GSM8021348,MONDO:0005091,severe acute respiratory syndrome
-GSM8021349,MONDO:0005091,severe acute respiratory syndrome
-GSM8021350,MONDO:0005091,severe acute respiratory syndrome
-GSM8021351,MONDO:0005091,severe acute respiratory syndrome
-GSM8021352,MONDO:0005091,severe acute respiratory syndrome
-GSM8021353,MONDO:0005091,severe acute respiratory syndrome
-GSM8199179,MONDO:0015547,hereditary dementia
-GSM8199179,MONDO:0024237,inherited neurodegenerative disorder
-GSM8199180,MONDO:0015547,hereditary dementia
-GSM8199180,MONDO:0024237,inherited neurodegenerative disorder
-GSM8199188,MONDO:0100087,familial Alzheimer disease
-GSM8199189,MONDO:0011743,Alzheimer disease 4
-GSM8200276,MONDO:0006412,sinus histiocytosis with massive lymphadenopathy
-GSM8367225,MONDO:0000429,autosomal genetic disease
-GSM8367226,MONDO:0000429,autosomal genetic disease
-GSM8367227,MONDO:0000429,autosomal genetic disease
-GSM8367228,MONDO:0000429,autosomal genetic disease
-GSM8367229,MONDO:0000429,autosomal genetic disease
-GSM8471250,MONDO:0003847,hereditary disease
-GSM8471252,MONDO:0003847,hereditary disease
-GSM8634986,MONDO:0011655,alveolar soft part sarcoma
-GSM8634987,MONDO:0011655,alveolar soft part sarcoma
-GSM8634988,MONDO:0011655,alveolar soft part sarcoma
-GSM8634989,MONDO:0011655,alveolar soft part sarcoma
-GSM8714493,MONDO:0100594,chronic idiopathic axonal polyneuropathy
-GSM8714495,MONDO:0100594,chronic idiopathic axonal polyneuropathy
-GSM8797488,MONDO:0005549,renal cell adenocarcinoma
-GSM8840046,MONDO:0016710,medulloblastoma with extensive nodularity
-GSM8840047,MONDO:0016710,medulloblastoma with extensive nodularity
-GSM8840048,MONDO:0016710,medulloblastoma with extensive nodularity
-GSM8840049,MONDO:0016710,medulloblastoma with extensive nodularity
-GSM8898655,MONDO:0011743,Alzheimer disease 4
-GSM8973624,MONDO:0100533,"hemorrhage, intracerebral, susceptibility to"
-GSM8973625,MONDO:0100533,"hemorrhage, intracerebral, susceptibility to"
-GSM8983044,MONDO:0005093,skin disorder
-GSM9002278,MONDO:1060125,congenital high airway obstruction syndrome
-GSM9002295,MONDO:1060125,congenital high airway obstruction syndrome
-GSM9040999,MONDO:0005096,squamous cell carcinoma
-GSM9052535,MONDO:0005091,severe acute respiratory syndrome
-GSM9052536,MONDO:0005091,severe acute respiratory syndrome
-GSM9052537,MONDO:0005091,severe acute respiratory syndrome
-GSM9052538,MONDO:0005091,severe acute respiratory syndrome
-GSM9052539,MONDO:0005091,severe acute respiratory syndrome
-GSM9052540,MONDO:0005091,severe acute respiratory syndrome
-GSM9052542,MONDO:0005091,severe acute respiratory syndrome
-GSM9071195,MONDO:0100313,focal segmental glomerulosclerosis
-GSM9098123,MONDO:0100073,methicillin-resistant staphylococcus aureus infectious disease
-GSM9098124,MONDO:0100073,methicillin-resistant staphylococcus aureus infectious disease
-GSM9197415,MONDO:0002251,hepatitis
-GSM9204000,MONDO:0015974,severe combined immunodeficiency
-GSM9204001,MONDO:0015974,severe combined immunodeficiency
-GSM9225693,MONDO:0005093,skin disorder
-GSM9239733,MONDO:0017604,marginal zone lymphoma
-GSM9424602,MONDO:0008963,Chediak-Higashi syndrome
-GSM9424603,MONDO:0008963,Chediak-Higashi syndrome
-GSM9424604,MONDO:0008963,Chediak-Higashi syndrome
-GSM9424605,MONDO:0008963,Chediak-Higashi syndrome
-GSM9424606,MONDO:0008963,Chediak-Higashi syndrome
-GSM9424607,MONDO:0008963,Chediak-Higashi syndrome
-GSM9424608,MONDO:0008963,Chediak-Higashi syndrome
-GSM9424608,MONDO:0100094,cannabinoid hyperemesis syndrome
-GSM9424609,MONDO:0008963,Chediak-Higashi syndrome
-GSM9424609,MONDO:0100094,cannabinoid hyperemesis syndrome
-GSM9424610,MONDO:0008963,Chediak-Higashi syndrome
-GSM9424611,MONDO:0008963,Chediak-Higashi syndrome
-GSM9424612,MONDO:0008963,Chediak-Higashi syndrome
-GSM9424613,MONDO:0008963,Chediak-Higashi syndrome
-GSM9424614,MONDO:0008963,Chediak-Higashi syndrome
-GSM9424615,MONDO:0008963,Chediak-Higashi syndrome
-GSM9424616,MONDO:0008963,Chediak-Higashi syndrome
-GSM9424616,MONDO:0100094,cannabinoid hyperemesis syndrome
-GSM9424617,MONDO:0008963,Chediak-Higashi syndrome
-GSM9424617,MONDO:0100094,cannabinoid hyperemesis syndrome
-GSM9424619,MONDO:0008963,Chediak-Higashi syndrome
-GSM9439741,MONDO:1010089,hypomyopathic dermatomyositis
-GSM9439749,MONDO:1010089,hypomyopathic dermatomyositis
-GSM9439752,MONDO:1010089,hypomyopathic dermatomyositis
-GSM9610990,MONDO:0011655,alveolar soft part sarcoma
-GSM9610991,MONDO:0011655,alveolar soft part sarcoma
-GSM10039417,MONDO:0005091,severe acute respiratory syndrome
-GSM10039418,MONDO:0005091,severe acute respiratory syndrome
+gsm,term,name,reason
+GSM3399307,MONDO:0000429,autosomal genetic disease,
+GSM3399308,MONDO:0000429,autosomal genetic disease,
+GSM3399309,MONDO:0000429,autosomal genetic disease,
+GSM3399310,MONDO:0000429,autosomal genetic disease,
+GSM3399311,MONDO:0000429,autosomal genetic disease,
+GSM3399312,MONDO:0000429,autosomal genetic disease,
+GSM3399324,MONDO:0000429,autosomal genetic disease,
+GSM3399325,MONDO:0000429,autosomal genetic disease,
+GSM3399327,MONDO:0000429,autosomal genetic disease,
+GSM3399328,MONDO:0000429,autosomal genetic disease,
+GSM3399329,MONDO:0000429,autosomal genetic disease,
+GSM3399330,MONDO:0000429,autosomal genetic disease,
+GSM3399331,MONDO:0000429,autosomal genetic disease,
+GSM3399332,MONDO:0000429,autosomal genetic disease,
+GSM3399333,MONDO:0000429,autosomal genetic disease,
+GSM3399335,MONDO:0000429,autosomal genetic disease,
+GSM3399336,MONDO:0000429,autosomal genetic disease,
+GSM3399338,MONDO:0000429,autosomal genetic disease,
+GSM3399339,MONDO:0000429,autosomal genetic disease,
+GSM3399340,MONDO:0000429,autosomal genetic disease,
+GSM3399341,MONDO:0000429,autosomal genetic disease,
+GSM3399342,MONDO:0000429,autosomal genetic disease,
+GSM3399343,MONDO:0000429,autosomal genetic disease,
+GSM3399344,MONDO:0000429,autosomal genetic disease,
+GSM3399345,MONDO:0000429,autosomal genetic disease,
+GSM3399346,MONDO:0000429,autosomal genetic disease,
+GSM3399347,MONDO:0000429,autosomal genetic disease,
+GSM3399348,MONDO:0000429,autosomal genetic disease,
+GSM3399349,MONDO:0000429,autosomal genetic disease,
+GSM3399350,MONDO:0000429,autosomal genetic disease,
+GSM3399351,MONDO:0000429,autosomal genetic disease,
+GSM3399352,MONDO:0000429,autosomal genetic disease,
+GSM3399354,MONDO:0000429,autosomal genetic disease,
+GSM3399355,MONDO:0000429,autosomal genetic disease,
+GSM3399356,MONDO:0000429,autosomal genetic disease,
+GSM3399356,MONDO:0002254,syndromic disease,
+GSM3399357,MONDO:0000429,autosomal genetic disease,
+GSM3399358,MONDO:0000429,autosomal genetic disease,
+GSM3399359,MONDO:0000429,autosomal genetic disease,
+GSM3399360,MONDO:0000429,autosomal genetic disease,
+GSM3399361,MONDO:0000429,autosomal genetic disease,
+GSM3399362,MONDO:0000429,autosomal genetic disease,
+GSM3399363,MONDO:0000429,autosomal genetic disease,
+GSM3399364,MONDO:0000429,autosomal genetic disease,
+GSM3399365,MONDO:0000429,autosomal genetic disease,
+GSM3399366,MONDO:0000429,autosomal genetic disease,
+GSM3399367,MONDO:0000429,autosomal genetic disease,
+GSM3399368,MONDO:0000429,autosomal genetic disease,
+GSM3399369,MONDO:0000429,autosomal genetic disease,
+GSM3399370,MONDO:0000429,autosomal genetic disease,
+GSM3399371,MONDO:0000429,autosomal genetic disease,
+GSM3399372,MONDO:0000429,autosomal genetic disease,
+GSM3399373,MONDO:0000429,autosomal genetic disease,
+GSM3399374,MONDO:0000429,autosomal genetic disease,
+GSM3399375,MONDO:0000429,autosomal genetic disease,
+GSM3399376,MONDO:0000429,autosomal genetic disease,
+GSM3399377,MONDO:0000429,autosomal genetic disease,
+GSM3399378,MONDO:0000429,autosomal genetic disease,
+GSM3399379,MONDO:0000429,autosomal genetic disease,
+GSM3399380,MONDO:0000429,autosomal genetic disease,
+GSM3399381,MONDO:0000429,autosomal genetic disease,
+GSM3399382,MONDO:0000429,autosomal genetic disease,
+GSM3399384,MONDO:0000429,autosomal genetic disease,
+GSM3399385,MONDO:0000429,autosomal genetic disease,
+GSM3399386,MONDO:0000429,autosomal genetic disease,
+GSM3399387,MONDO:0000429,autosomal genetic disease,
+GSM3399388,MONDO:0000429,autosomal genetic disease,
+GSM3399389,MONDO:0000429,autosomal genetic disease,
+GSM3399390,MONDO:0000429,autosomal genetic disease,
+GSM3399391,MONDO:0000429,autosomal genetic disease,
+GSM3399392,MONDO:0000429,autosomal genetic disease,
+GSM3399393,MONDO:0000429,autosomal genetic disease,
+GSM3399394,MONDO:0000429,autosomal genetic disease,
+GSM3399395,MONDO:0000429,autosomal genetic disease,
+GSM3399396,MONDO:0000429,autosomal genetic disease,
+GSM3399397,MONDO:0000429,autosomal genetic disease,
+GSM3399398,MONDO:0000429,autosomal genetic disease,
+GSM3399399,MONDO:0000429,autosomal genetic disease,
+GSM3399400,MONDO:0000429,autosomal genetic disease,
+GSM3399401,MONDO:0000429,autosomal genetic disease,
+GSM3399402,MONDO:0000429,autosomal genetic disease,
+GSM3399403,MONDO:0000429,autosomal genetic disease,
+GSM3399404,MONDO:0000429,autosomal genetic disease,
+GSM3399405,MONDO:0000429,autosomal genetic disease,
+GSM3399406,MONDO:0000429,autosomal genetic disease,
+GSM3399407,MONDO:0000429,autosomal genetic disease,
+GSM3399408,MONDO:0000429,autosomal genetic disease,
+GSM5538852,MONDO:0015974,severe combined immunodeficiency,
+GSM5538853,MONDO:0015974,severe combined immunodeficiency,
+GSM5538854,MONDO:0015974,severe combined immunodeficiency,
+GSM5538855,MONDO:0015974,severe combined immunodeficiency,
+GSM5713386,MONDO:0008264,autosomal dominant medullary cystic kidney disease with or without hyperuricemia,
+GSM5713387,MONDO:0008264,autosomal dominant medullary cystic kidney disease with or without hyperuricemia,
+GSM5713388,MONDO:0008264,autosomal dominant medullary cystic kidney disease with or without hyperuricemia,
+GSM5713389,MONDO:0008264,autosomal dominant medullary cystic kidney disease with or without hyperuricemia,
+GSM5713390,MONDO:0008264,autosomal dominant medullary cystic kidney disease with or without hyperuricemia,
+GSM5713396,MONDO:0008264,autosomal dominant medullary cystic kidney disease with or without hyperuricemia,
+GSM5713397,MONDO:0008264,autosomal dominant medullary cystic kidney disease with or without hyperuricemia,
+GSM5713398,MONDO:0008264,autosomal dominant medullary cystic kidney disease with or without hyperuricemia,
+GSM5713399,MONDO:0008264,autosomal dominant medullary cystic kidney disease with or without hyperuricemia,
+GSM5713400,MONDO:0008264,autosomal dominant medullary cystic kidney disease with or without hyperuricemia,
+GSM5713403,MONDO:0008264,autosomal dominant medullary cystic kidney disease with or without hyperuricemia,
+GSM5713404,MONDO:0008264,autosomal dominant medullary cystic kidney disease with or without hyperuricemia,
+GSM5713405,MONDO:0008264,autosomal dominant medullary cystic kidney disease with or without hyperuricemia,
+GSM5713406,MONDO:0008264,autosomal dominant medullary cystic kidney disease with or without hyperuricemia,
+GSM5713407,MONDO:0008264,autosomal dominant medullary cystic kidney disease with or without hyperuricemia,
+GSM5713408,MONDO:0008264,autosomal dominant medullary cystic kidney disease with or without hyperuricemia,
+GSM5713409,MONDO:0008264,autosomal dominant medullary cystic kidney disease with or without hyperuricemia,
+GSM5713410,MONDO:0008264,autosomal dominant medullary cystic kidney disease with or without hyperuricemia,
+GSM5713411,MONDO:0008264,autosomal dominant medullary cystic kidney disease with or without hyperuricemia,
+GSM5713412,MONDO:0008264,autosomal dominant medullary cystic kidney disease with or without hyperuricemia,
+GSM5713413,MONDO:0008264,autosomal dominant medullary cystic kidney disease with or without hyperuricemia,
+GSM5713414,MONDO:0008264,autosomal dominant medullary cystic kidney disease with or without hyperuricemia,
+GSM5713415,MONDO:0008264,autosomal dominant medullary cystic kidney disease with or without hyperuricemia,
+GSM5713416,MONDO:0008264,autosomal dominant medullary cystic kidney disease with or without hyperuricemia,
+GSM6523977,MONDO:0100087,familial Alzheimer disease,
+GSM6613090,MONDO:0041656,ST-elevation myocardial infarction,
+GSM6631766,MONDO:0000425,X-linked disease,
+GSM7585149,MONDO:0005549,renal cell adenocarcinoma,
+GSM7585150,MONDO:0005549,renal cell adenocarcinoma,
+GSM7585151,MONDO:0005549,renal cell adenocarcinoma,
+GSM7585152,MONDO:0005549,renal cell adenocarcinoma,
+GSM7585153,MONDO:0005549,renal cell adenocarcinoma,
+GSM7585154,MONDO:0005549,renal cell adenocarcinoma,
+GSM7585155,MONDO:0005549,renal cell adenocarcinoma,
+GSM7585156,MONDO:0005549,renal cell adenocarcinoma,
+GSM7567492,MONDO:0015974,severe combined immunodeficiency,
+GSM7990552,MONDO:0019622,non-specific interstitial pneumonia,
+GSM7990553,MONDO:0019622,non-specific interstitial pneumonia,
+GSM8505462,MONDO:0017591,combined pulmonary fibrosis-emphysema syndrome,
+GSM7990295,MONDO:0005093,skin disorder,
+GSM8021238,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021239,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021240,MONDO:0005087,respiratory system disorder,
+GSM8021241,MONDO:0005087,respiratory system disorder,
+GSM8021241,MONDO:0020683,acute disease,
+GSM8021242,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021243,MONDO:0005087,respiratory system disorder,
+GSM8021243,MONDO:0020683,acute disease,
+GSM8021244,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021245,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021246,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021247,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021248,MONDO:0005087,respiratory system disorder,
+GSM8021249,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021250,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021251,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021252,MONDO:0005087,respiratory system disorder,
+GSM8021253,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021254,MONDO:0005087,respiratory system disorder,
+GSM8021255,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021256,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021257,MONDO:0005087,respiratory system disorder,
+GSM8021258,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021259,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021260,MONDO:0005087,respiratory system disorder,
+GSM8021261,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021262,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021263,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021264,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021265,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021266,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021267,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021268,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021269,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021270,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021271,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021272,MONDO:0005087,respiratory system disorder,
+GSM8021272,MONDO:0020683,acute disease,
+GSM8021273,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021274,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021275,MONDO:0005087,respiratory system disorder,
+GSM8021276,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021277,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021278,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021279,MONDO:0005087,respiratory system disorder,
+GSM8021279,MONDO:0020683,acute disease,
+GSM8021280,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021281,MONDO:0005087,respiratory system disorder,
+GSM8021282,MONDO:0005087,respiratory system disorder,
+GSM8021283,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021284,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021285,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021286,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021287,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021288,MONDO:0005087,respiratory system disorder,
+GSM8021288,MONDO:0020683,acute disease,
+GSM8021289,MONDO:0005087,respiratory system disorder,
+GSM8021290,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021291,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021292,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021293,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021294,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021295,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021296,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021297,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021298,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021299,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021300,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021301,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021302,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021303,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021304,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021305,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021306,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021307,MONDO:0005087,respiratory system disorder,
+GSM8021307,MONDO:0020683,acute disease,
+GSM8021308,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021309,MONDO:0005087,respiratory system disorder,
+GSM8021309,MONDO:0020683,acute disease,
+GSM8021310,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021311,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021312,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021313,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021314,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021315,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021316,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021317,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021318,MONDO:0005087,respiratory system disorder,
+GSM8021319,MONDO:0005087,respiratory system disorder,
+GSM8021320,MONDO:0005087,respiratory system disorder,
+GSM8021320,MONDO:0020683,acute disease,
+GSM8021321,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021322,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021323,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021324,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021325,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021326,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021327,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021328,MONDO:0005087,respiratory system disorder,
+GSM8021329,MONDO:0005087,respiratory system disorder,
+GSM8021329,MONDO:0020683,acute disease,
+GSM8021330,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021331,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021332,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021333,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021334,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021335,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021336,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021337,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021338,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021339,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021340,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021341,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021342,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021343,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021344,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021345,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021346,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021347,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021348,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021349,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021350,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021351,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021352,MONDO:0005091,severe acute respiratory syndrome,
+GSM8021353,MONDO:0005091,severe acute respiratory syndrome,
+GSM8199179,MONDO:0015547,hereditary dementia,
+GSM8199179,MONDO:0024237,inherited neurodegenerative disorder,
+GSM8199180,MONDO:0015547,hereditary dementia,
+GSM8199180,MONDO:0024237,inherited neurodegenerative disorder,
+GSM8199188,MONDO:0100087,familial Alzheimer disease,
+GSM8199189,MONDO:0011743,Alzheimer disease 4,
+GSM8200276,MONDO:0006412,sinus histiocytosis with massive lymphadenopathy,
+GSM8329293,MONDO:1013329,"plasma cell myeloma, non-human animal",non-human-animal term on a human sample
+GSM8329294,MONDO:1013329,"plasma cell myeloma, non-human animal",non-human-animal term on a human sample
+GSM8329295,MONDO:1013329,"plasma cell myeloma, non-human animal",non-human-animal term on a human sample
+GSM8329296,MONDO:1013329,"plasma cell myeloma, non-human animal",non-human-animal term on a human sample
+GSM8329297,MONDO:1013329,"plasma cell myeloma, non-human animal",non-human-animal term on a human sample
+GSM8329298,MONDO:1013329,"plasma cell myeloma, non-human animal",non-human-animal term on a human sample
+GSM8367225,MONDO:0000429,autosomal genetic disease,
+GSM8367226,MONDO:0000429,autosomal genetic disease,
+GSM8367227,MONDO:0000429,autosomal genetic disease,
+GSM8367228,MONDO:0000429,autosomal genetic disease,
+GSM8367229,MONDO:0000429,autosomal genetic disease,
+GSM8471250,MONDO:0003847,hereditary disease,
+GSM8471252,MONDO:0003847,hereditary disease,
+GSM8634986,MONDO:0011655,alveolar soft part sarcoma,
+GSM8634987,MONDO:0011655,alveolar soft part sarcoma,
+GSM8634988,MONDO:0011655,alveolar soft part sarcoma,
+GSM8634989,MONDO:0011655,alveolar soft part sarcoma,
+GSM8714493,MONDO:0100594,chronic idiopathic axonal polyneuropathy,
+GSM8714495,MONDO:0100594,chronic idiopathic axonal polyneuropathy,
+GSM8797488,MONDO:0005549,renal cell adenocarcinoma,
+GSM8840046,MONDO:0016710,medulloblastoma with extensive nodularity,
+GSM8840047,MONDO:0016710,medulloblastoma with extensive nodularity,
+GSM8840048,MONDO:0016710,medulloblastoma with extensive nodularity,
+GSM8840049,MONDO:0016710,medulloblastoma with extensive nodularity,
+GSM8898655,MONDO:0011743,Alzheimer disease 4,
+GSM8973624,MONDO:0100533,"hemorrhage, intracerebral, susceptibility to",
+GSM8973625,MONDO:0100533,"hemorrhage, intracerebral, susceptibility to",
+GSM8983044,MONDO:0005093,skin disorder,
+GSM9002278,MONDO:1060125,congenital high airway obstruction syndrome,
+GSM9002295,MONDO:1060125,congenital high airway obstruction syndrome,
+GSM9040999,MONDO:0005096,squamous cell carcinoma,
+GSM9052535,MONDO:0005091,severe acute respiratory syndrome,
+GSM9052536,MONDO:0005091,severe acute respiratory syndrome,
+GSM9052537,MONDO:0005091,severe acute respiratory syndrome,
+GSM9052538,MONDO:0005091,severe acute respiratory syndrome,
+GSM9052539,MONDO:0005091,severe acute respiratory syndrome,
+GSM9052540,MONDO:0005091,severe acute respiratory syndrome,
+GSM9052542,MONDO:0005091,severe acute respiratory syndrome,
+GSM9071195,MONDO:0100313,focal segmental glomerulosclerosis,
+GSM9098123,MONDO:0100073,methicillin-resistant staphylococcus aureus infectious disease,
+GSM9098124,MONDO:0100073,methicillin-resistant staphylococcus aureus infectious disease,
+GSM9197415,MONDO:0002251,hepatitis,
+GSM9204000,MONDO:0015974,severe combined immunodeficiency,
+GSM9204001,MONDO:0015974,severe combined immunodeficiency,
+GSM9225693,MONDO:0005093,skin disorder,
+GSM9228906,MONDO:1013329,"plasma cell myeloma, non-human animal",non-human-animal term on a human sample
+GSM9228907,MONDO:1013329,"plasma cell myeloma, non-human animal",non-human-animal term on a human sample
+GSM9239733,MONDO:0017604,marginal zone lymphoma,
+GSM9424602,MONDO:0008963,Chediak-Higashi syndrome,
+GSM9424603,MONDO:0008963,Chediak-Higashi syndrome,
+GSM9424604,MONDO:0008963,Chediak-Higashi syndrome,
+GSM9424605,MONDO:0008963,Chediak-Higashi syndrome,
+GSM9424606,MONDO:0008963,Chediak-Higashi syndrome,
+GSM9424607,MONDO:0008963,Chediak-Higashi syndrome,
+GSM9424608,MONDO:0008963,Chediak-Higashi syndrome,
+GSM9424608,MONDO:0100094,cannabinoid hyperemesis syndrome,
+GSM9424609,MONDO:0008963,Chediak-Higashi syndrome,
+GSM9424609,MONDO:0100094,cannabinoid hyperemesis syndrome,
+GSM9424610,MONDO:0008963,Chediak-Higashi syndrome,
+GSM9424611,MONDO:0008963,Chediak-Higashi syndrome,
+GSM9424612,MONDO:0008963,Chediak-Higashi syndrome,
+GSM9424613,MONDO:0008963,Chediak-Higashi syndrome,
+GSM9424614,MONDO:0008963,Chediak-Higashi syndrome,
+GSM9424615,MONDO:0008963,Chediak-Higashi syndrome,
+GSM9424616,MONDO:0008963,Chediak-Higashi syndrome,
+GSM9424616,MONDO:0100094,cannabinoid hyperemesis syndrome,
+GSM9424617,MONDO:0008963,Chediak-Higashi syndrome,
+GSM9424617,MONDO:0100094,cannabinoid hyperemesis syndrome,
+GSM9424619,MONDO:0008963,Chediak-Higashi syndrome,
+GSM9439741,MONDO:1010089,hypomyopathic dermatomyositis,
+GSM9439749,MONDO:1010089,hypomyopathic dermatomyositis,
+GSM9439752,MONDO:1010089,hypomyopathic dermatomyositis,
+GSM9610990,MONDO:0011655,alveolar soft part sarcoma,
+GSM9610991,MONDO:0011655,alveolar soft part sarcoma,
+GSM10001168,MONDO:1013329,"plasma cell myeloma, non-human animal",non-human-animal term on a human sample
+GSM10001169,MONDO:1013329,"plasma cell myeloma, non-human animal",non-human-animal term on a human sample
+GSM10001170,MONDO:1013329,"plasma cell myeloma, non-human animal",non-human-animal term on a human sample
+GSM10001171,MONDO:1013329,"plasma cell myeloma, non-human animal",non-human-animal term on a human sample
+GSM10001172,MONDO:1013329,"plasma cell myeloma, non-human animal",non-human-animal term on a human sample
+GSM10001173,MONDO:1013329,"plasma cell myeloma, non-human animal",non-human-animal term on a human sample
+GSM10001174,MONDO:1013329,"plasma cell myeloma, non-human animal",non-human-animal term on a human sample
+GSM10001175,MONDO:1013329,"plasma cell myeloma, non-human animal",non-human-animal term on a human sample
+GSM10039417,MONDO:0005091,severe acute respiratory syndrome,
+GSM10039418,MONDO:0005091,severe acute respiratory syndrome,

metadata/v2/provenance.json

@@ -1,6 +1,6 @@
 {
  "schema": "sda-sample-metadata-2",
- "built": "2026-11-05",
+ "built": "2026-11-06",
  "base_release": "sda-unified-20261010-v3",
  "base_hf_tag": "v1.0.0-20261025",
  "base_hf_revision": "999566bf516169ba8c9cf1ad9e5a2b722bb8a97a",
@@ -24,7 +24,7 @@
    "life_stage": 1.7,
    "disease": 3.0
   },
-  "human_review": "200-sample pack prepared (100 random, 100 targeted); results to be added"
+  "human_review": "200-sample pack (100 random, 100 targeted) read by a human reviewer offline; the errors found were corrected in 2.2; per-field accuracy from that review not yet computed"
  },
  "crosscheck_regex_organ_map": {
   "organ_both_assigned": 10960,
@@ -53,16 +53,16 @@
   "tumour_regex_only_after_xenograft": 43
  },
  "files": {
-  "README.md": "efd3bd99c80704355adc792817ca771c0219c555ae56e11d6d118bb2d976fd1f",
-  "changes_v2.csv": "7901fcd917602f308ea0ca3c8a74c462c473caa2178a33ec5e9c3552498728a5",
-  "dropped_disease_terms.csv": "697ecd7701a923e8b7ad2c1309d1064403993c8ac75efdcf7cd61776db159862",
-  "qa_v2.json": "3c55068f167fa701729223e2d9c2a082befdba17f6627e610c719efb738927a5",
-  "samples_metadata_v2.csv": "62f36ce967cabb80398f141b8b2beb981ff97a89a14d3a49d7577bb59d28f12e",
-  "samples_metadata_v2.parquet": "702d11d28b5a606b2b0a13510c46a01f3d310c4312727b9bb80007b6ab6b213a",
-  "schema_v2.json": "5f4b29aaf5d1d990c45916d2e1922f5da0b484500c55e93d57b62b1b6864b194",
-  "studies_v2.csv": "d8bf238b728f901a917e5a41cadde6cb0797fd5982c369849dcc1cb2e4fb83ad"
+  "README.md": "4697dfa2e1310f62c930f950103766bc015610b3404895a8e6676fa6f017fe02",
+  "changes_v2.csv": "9f096e905effabc808c1b5ac142ff8cab3d9a367774ae82757b7406d23e631dc",
+  "dropped_disease_terms.csv": "28412ef3f7f7660ea7a85ed46ebcfecec08728dadc549e03510d31a2cce11b80",
+  "qa_v2.json": "eed9e5ea45d33345cf16772c07e7f0adbe472b2a55d800701cdaa63402f5f4c3",
+  "samples_metadata_v2.csv": "6d2ef49baa470140d3ae5fcc621192d2422bfbca715de217efae29181fbc1804",
+  "samples_metadata_v2.parquet": "690bcd2be263396e2ce9522c543a7353915f583e56aef31a1ad0b1f2c78226b1",
+  "schema_v2.json": "df7f767bbb2914a23d9295bdc0ba4dec4fca952465e1ec3138460728db57ecbe",
+  "studies_v2.csv": "47ae0513a19ebaea9282d8362164b5b898cd143ad7132310cba4d78ee5bb8150"
  },
- "version": "2.1",
+ "version": "2.2",
  "changes_from_2.0": "one name per assay (ASSAY_CANON, 261 rows); assay_type of 6 ISS (Cartana) samples (GSE227046) now imaging-based; um_per_unit and image_um_per_px copied exactly from the release parquet; organ, tissue, disease, life stage and other annotations unchanged",
  "sensitivity_balanced_r2_series_units": {
   "human": {
@@ -81,5 +81,6 @@
     0.179
    ]
   }
- }
+ },
+ "changes_from_2.1": "rules: non-human-animal MONDO terms removed from human samples (16); culture/organoid/engineered life stage = not stated; sex from male/female words in sample text (77); rodent day ages in age series; manual corrections in 10 samples (overrides_v2.csv); new column sex_source"
 }

metadata/v2/qa_v2.json

@@ -4,22 +4,24 @@
  "flags": {
   "low_confidence_annotation": 3119,
   "feature_species_differs": 47,
-  "normal_but_disease_text": 20
+  "normal_but_disease_text": 17
  },
- "changes_vs_v3": 212,
- "dropped_short_synonym_disease_terms": 331,
+ "changes_vs_v3": 236,
+ "dropped_short_synonym_disease_terms": 347,
  "life_stage_source": {
-  "luna": 8418,
+  "luna": 8172,
   "age rule: age with unit": 1630,
-  "age rule: bare number read as years": 1372,
+  "age rule: bare number read as years": 1351,
   "age rule: postnatal day": 404,
+  "rule: culture or organoid (culture time is not a life stage)": 239,
   "age rule: embryonic day": 154,
   "age rule: age in years": 113,
   "age rule: post-conception / gestational weeks": 64,
+  "age rule: days in an age series": 28,
   "age rule: Carnegie stage": 4,
   "age rule: age range midpoint": 4
  },
- "life_stage_rule_vs_luna_disagree": 615,
+ "life_stage_rule_vs_luna_disagree": 624,
  "organ": {
   "brain": 3391,
   "colon": 1000,
@@ -29,7 +31,7 @@
   "kidney": 590,
   "skin": 489,
   "pancreas": 488,
-  "other": 399,
+  "other": 400,
   "heart": 292,
   "breast": 267,
   "small intestine": 251,
@@ -45,7 +47,7 @@
   "uterus": 117,
   "spleen": 108,
   "bone": 107,
-  "prostate": 102,
+  "prostate": 101,
   "placenta": 94,
   "embryo (whole)": 93,
   "eye": 89,
@@ -77,25 +79,25 @@
   "unknown": 2
  },
  "disease_status": {
-  "disease": 7021,
-  "normal": 3950,
+  "disease": 7023,
+  "normal": 3948,
   "perturbation": 1125,
   "not stated": 67
  },
  "life_stage": {
-  "not stated": 7065,
-  "adult": 2860,
+  "not stated": 7060,
+  "adult": 2838,
   "aged": 1182,
   "juvenile": 330,
-  "neonatal or infant": 296,
+  "neonatal or infant": 324,
   "embryonic": 282,
-  "fetal": 148
+  "fetal": 147
  },
  "sex": {
-  "unknown": 7518,
-  "male": 2639,
-  "female": 1987,
-  "mixed": 19
+  "unknown": 7441,
+  "male": 2689,
+  "female": 2012,
+  "mixed": 21
  },
  "preservation": {
   "null": 6957,
@@ -103,8 +105,8 @@
   "fresh frozen": 2327,
   "fixed frozen": 40
  },
- "with_tissue_term": 11606,
- "with_disease_term": 6477,
+ "with_tissue_term": 11605,
+ "with_disease_term": 6479,
  "with_pubmed": 8479,
  "with_donor_key": 3391
 }

metadata/v2/samples_metadata_v2.parquet

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:702d11d28b5a606b2b0a13510c46a01f3d310c4312727b9bb80007b6ab6b213a
-size 820621
+oid sha256:690bcd2be263396e2ce9522c543a7353915f583e56aef31a1ad0b1f2c78226b1
+size 822563

metadata/v2/schema_v2.json

@@ -34,6 +34,7 @@
   "life_stage_luna": "Luna's life-stage answer (kept when the age rule overrides it)",
   "age_raw": "age as written",
   "sex": "male / female / mixed / unknown (coded values without a stated key, e.g. 1/2, stay unknown)",
+  "sex_source": "extracted field, sample text (the words male / female in title, source or characteristics), manual, or not stated",
   "sex_raw": "sex as written",
   "donor_key": "<published_gse>:<donor id>; donor IDs are only unique within a study",
   "donor_id_raw": "donor ID as written",

metadata/v2/studies_v2.csv

@@ -629,7 +629,7 @@ GSE283832,"A cycling, progenitor-like cell population at the root of atypical te
 GSE283863,Cranial radiotherapy profoundly affects glia without inducing widespread cellular senescence,1,Mus musculus,CosMx,CosMx,brain,,perturbation,0,40518745,train
 GSE283872,Prior High Fiber Intake Impinges on the Cellular Responses of Mesenteric Adipose and Intestinal Tissues to Subsequent High Fat Feeding [Spatial Transcriptomics],4,Mus musculus,Stereo-seq,Stereo-seq,small intestine,,perturbation,0,41520334,test
 GSE283883,Spatial Transcriptomics Sequencing of Mouse Liver at 2µm Resolution Using a Novel Spatial DNA Chip,1,Mus musculus,Other,"other (named in GEO, not in list)",liver,,normal,0,,train
-GSE283945,Spatially Resolved Insights Into Fistulating Crohn’s Disease Pathogenesis - Visium Spatial Transcriptomics,35,Homo sapiens,Visium,Visium,colon;small intestine;rectum;other,Crohn disease;inflammatory bowel disease;intestinal disorder,disease;normal,35,41224999,test
+GSE283945,Spatially Resolved Insights Into Fistulating Crohn’s Disease Pathogenesis - Visium Spatial Transcriptomics,35,Homo sapiens,Visium,Visium,colon;small intestine;rectum;other,Crohn disease;inflammatory bowel disease;intestinal disorder;diverticulitis of colon,disease;normal,35,41224999,test
 GSE283959,Spatially resolved chimeric analysis reveals extracellular CKB-mediated ATP uptake at the glioma-astrocyte invasive front,4,Mus musculus,Visium,Visium,brain,glioblastoma;glioma,disease,4,40991701,train
 GSE283967,Multi-modal refinement of the human heart atlas during the first gestational trimester,3,Homo sapiens,Visium,Visium,heart,,normal,3,39927812,train
 GSE284005,A single-cell resolution spatial transcriptomics atlas of human multiple sclerosis lesion (MERSCOPE),17,Homo sapiens,MERFISH/MERSCOPE,MERFISH,brain,multiple sclerosis,disease;normal,0,,train
@@ -753,7 +753,7 @@ GSE294669,Spatial Proteomics and Transcriptomics Reveal Early Immune Cell Organi
 GSE294759,Application of spatial transcriptomics across organoids for a high-resolution spatial whole-transcriptome benchmarking dataset,9,Mus musculus;Homo sapiens,Stereo-seq,Stereo-seq,head and neck;heart;brain;cartilage;lung;other;kidney,,normal,0,42164865,train
 GSE294765,A skeletal muscle atlas shows neuromuscular junction adaptations to growth and atrophy,6,Mus musculus,Visium,Visium,skeletal muscle,,perturbation;normal,6,42019489,train
 GSE294814,Spatially resolved profiling of host and bacteria RNAs in mammalian tissue,7,Mus musculus,DBiT-seq,microDBiT,colon;small intestine,,normal,0,,val
-GSE294844,Transcriptional signature for dysplastic epidermal development in human pre-malignant skin,5,Homo sapiens,Visium,Visium CytAssist;Visium,skin,,normal,4,,test
+GSE294844,Transcriptional signature for dysplastic epidermal development in human pre-malignant skin,5,Homo sapiens,Visium,Visium CytAssist;Visium,skin,actinic keratosis,disease,4,,test
 GSE294965,Spatio-temporal interaction of immune and renal cells determines glomerular crescent formation in autoimmune kidney disease,9,Homo sapiens,Xenium,Xenium,kidney,kidney disorder,disease,9,40393992,train
 GSE295043,A spatiotemporal atlas of orchiectomy-induced modulation of cellular composition and gene expression in the mouse prostate,8,Mus musculus,Visium,Visium,prostate,,perturbation,8,40974890,train
 GSE295060,Gain-of-function PPM1D mutations attenuate ischemic stroke,2,Mus musculus,Visium,Visium,brain,cerebral artery occlusion;ischemic stroke,disease,2,,train
@@ -792,7 +792,7 @@ GSE296896,High-resolution spatial transcriptomics of mouse intestine [Spatial-RN
 GSE296897,High-resolution spatial transcriptomics of DARLIN mouse [CRISPR array amplicon],36,Mus musculus,BMK S1000,BMKMANU S1000/S3000,small intestine;colon;brain,,perturbation,0,42373956,train
 GSE296975,Defining Cellular Diversity at the Swine Maternal-Fetal Interface Using Spatial Transcriptomics and Organoids [MFI017_Visium],4,Sus scrofa,Visium,Visium,placenta,,normal,4,40875599,train
 GSE296982,Single cell map of the adult female mouse urethra reveals epithelial and stromal macrophages with distinct functional identities,1,Mus musculus,Xenium,Xenium,other,,normal,1,40907791,train
-GSE297058,Hereditary Chronic Pancreatitis Induced Plasticity Cooperates with Mutant Kras in Early Pancreatic Carcinogenesis,2,Mus musculus,Visium HD,Visium HD,pancreas,chronic pancreatitis;hereditary disease;hereditary chronic pancreatitis,disease,2,41419303,train
+GSE297058,Hereditary Chronic Pancreatitis Induced Plasticity Cooperates with Mutant Kras in Early Pancreatic Carcinogenesis,2,Mus musculus,Visium HD,Visium HD,pancreas,hereditary chronic pancreatitis,normal;disease,2,41419303,train
 GSE297064,Targeting circulating mechanoresponsive monocytes and macrophages to reduce fibrosis,2,Homo sapiens,Visium,Visium,skin,,not stated;disease,2,41120571,train
 GSE297068,A spatial code governs olfactory receptor choice and aligns sensory maps in the nose and brain,6,Mus musculus,MERFISH/MERSCOPE;Stereo-seq,MERSCOPE;Stereo-seq,head and neck,,normal,0,42054991,train
 GSE297081,Inhibition of ACLY enhances tumor immunogenicity and resolves MASH-driven HCC,4,Mus musculus,Visium,Visium,liver,metabolic dysfunction-associated steatohepatitis;hepatocellular carcinoma,disease;normal,4,40739358,test
@@ -932,7 +932,7 @@ GSE307504,Single-cell and spatial transcriptomic atlas of pathological scars unc
 GSE307534,"Spatial transcriptomics analysis of normal lung tissues, precursor lung lesions and invasive lung adenocarcinomas",56,Homo sapiens,Visium,Visium,lung,glandular cell neoplasm;lung adenocarcinoma,disease;normal,56,41202811,train
 GSE307586,Spatiomolecular mapping reveals anatomical organization of heterogeneous cell types in the human nucleus accumbens [Spatial Transcriptomics],38,Homo sapiens,Visium,Visium,brain,,normal,38,40964296;42385698,train
 GSE307588,Spatial profiling of hypoxic injury in human kidney organoids,25,Homo sapiens,Xenium,Xenium,kidney,,perturbation;normal;disease,0,42613631,train
-GSE307661,Belantamab Mafodotin Triggers Immune Invigoration in Multiple Myeloma Via Inflammatory and Immunogenic Cell Death [Xenium],3,Homo sapiens,Xenium,Xenium,bone marrow,"plasma cell myeloma;plasma cell myeloma, non-human animal",disease,3,,test
+GSE307661,Belantamab Mafodotin Triggers Immune Invigoration in Multiple Myeloma Via Inflammatory and Immunogenic Cell Death [Xenium],3,Homo sapiens,Xenium,Xenium,bone marrow,plasma cell myeloma,disease,3,,test
 GSE307719,Cellular and molecular signatures of the vascular microenvironment define the pre-metastatic brain and meninges [MERFISH],8,Mus musculus,MERFISH/MERSCOPE,MERSCOPE,brain;meninges,neoplasm,normal;disease,0,,train
 GSE307744,Human bladder Visium spatial gene expression,1,Homo sapiens,Visium,Visium,bladder,,not stated,1,,train
 GSE307817,A MEF2C transcription factor network regulates proliferation of glomerular endothelial cells in diabetic kidney disease,12,Homo sapiens,Visium,Visium,kidney,diabetic kidney disease;diabetes mellitus;chronic kidney disease;kidney disorder;glucose metabolism disease,disease,12,42055320,train
@@ -1033,7 +1033,7 @@ GSE315411,Fishing with Two Lines: A Hybrid Approach to Spatial Transcriptomic Di
 GSE315416,A High-Resolution Stereo-seq Spatial Transcriptomic Dataset of the Bovine Liver,2,Bos taurus,Stereo-seq,Stereo-seq,liver,,normal,0,42737743,train
 GSE315435,Rhythmic nephron formation in the developing kidney,11,Mus musculus;Homo sapiens,Xenium,Xenium,kidney,,normal,11,,train
 GSE315482,Single-Cell Multi-omics Profiling of Mouse Hepatic Immune Microenvironment Reveals Neutrophil-Kupffer Cell Crosstalk via Thrombospondin-1/CD36 after Surgical Stress,4,Mus musculus,Visium,Visium,liver,ischemia reperfusion injury,perturbation;disease,4,,train
-GSE315487,CD73 inhibition overcomes adaptive immune resistance to PARP inhibition in models of prostate cancer,4,Mus musculus,Visium,Visium,prostate,prostate cancer,disease,0,,train
+GSE315487,CD73 inhibition overcomes adaptive immune resistance to PARP inhibition in models of prostate cancer,4,Mus musculus,Visium,Visium,prostate;other,prostate cancer,disease,0,,train
 GSE315553,Spatial Transcriptomics Data from Human Choroid Plexus,4,Homo sapiens,Slide-seq,Slide-seq,brain,,normal;not stated,0,41648589,val
 GSE315907,p53 maintains healthy aging,196,Mus musculus,CosMx,CosMx,liver,,perturbation;normal,196,,train
 GSE316346,TGFβ1 and Oncostatin M promotes the organization of two distinct stromal niches controlling different EMT states [Xenium],2,Mus musculus,Xenium,Xenium,skin,mesenchymal cell neoplasm,disease,2,,train
@@ -1174,7 +1174,7 @@ GSE333244,Spatial Rewiring of Enterocyte Identity in Celiac Disease [Visium],4,H
 GSE333401,Prenatal DBP Exposure Dysregulate Fetal-Placenta Spatial Transcriptomic Profiles,13,Mus musculus,Visium,Visium,placenta,,perturbation,13,,val
 GSE333479,A unified spatial transcriptome profiling of ten mouse organs,21,Mus musculus,Stereo-seq,Stereo-seq,colon;brain;kidney;skin;thymus;spleen;lung;uterus;testis;ovary,,normal,0,42374103,train
 GSE333529,A skin–kidney neutrophil axis links UV exposure to renal angiogenesis and tissue remodeling in healthy and lupus kidneys. [Spatial Transcriptomics],4,Homo sapiens,Visium,Visium,kidney,systemic lupus erythematosus,disease,4,42679049,train
-GSE333617,Targeting JAK1/3-STAT1 signaling attenuates cytotoxic T lymphocytes activation for the treatment in Stevens-Johnson syndrome and toxic epidermal necrolysis,4,Homo sapiens,Visium,Visium,skin,Stevens-Johnson syndrome,disease,4,,train
+GSE333617,Targeting JAK1/3-STAT1 signaling attenuates cytotoxic T lymphocytes activation for the treatment in Stevens-Johnson syndrome and toxic epidermal necrolysis,4,Homo sapiens,Visium,Visium,skin,Stevens-Johnson syndrome,disease;normal,4,,train
 GSE333685,Vascular smooth muscle cell state trajectories mediate molecular mechanisms of coronary disease risk,1,Mus musculus,Xenium,Xenium,blood vessel,coronary artery disorder,disease,1,41844614,train
 GSE333693,Rat thymic epithelium-free areas are specialized medullary niches enriched for mature thymocytes and distinct stromal subsets,1,Rattus norvegicus,Stereo-seq,Stereo-seq,thymus,,normal,0,,train
 GSE333735,TGFbeta determines epithelial tissue spacing by regulating mesenchymal condensation,3,Gallus gallus,DBiT-seq,DBiT-seq,lung,,normal,0,42446999,train
@@ -1254,7 +1254,7 @@ GSE344692,Placental TRPV2 supports trophoblast function and normal fetal develop
 GSE344748,REM sleep readiness and duration are encoded during NREM by spinal-projecting sublaterodorsal (SLD) neurons.,4,Mus musculus,Slide-seq,Slide-seq,brain,,perturbation,0,,val
 GSE344969,Spatial transcriptomic profiling of calcified human coronary artery lesions,2,Homo sapiens,Visium,Visium,blood vessel,calcinosis,disease,2,,train
 GSE345289,Gene expression mapping of eye after adipocyte depletion,2,Mus musculus,Xenium,Xenium,eye,,perturbation,2,,val
-GSE345302,Spatial profiling identifies a distinct and topographically-defined tumor microenvironment that emerges during multiple myeloma evolution,8,Homo sapiens,Xenium,Xenium,bone marrow,"plasma cell myeloma;plasma cell myeloma, non-human animal",disease,8,42678098,train
+GSE345302,Spatial profiling identifies a distinct and topographically-defined tumor microenvironment that emerges during multiple myeloma evolution,8,Homo sapiens,Xenium,Xenium,bone marrow,plasma cell myeloma,disease,8,42678098,train
 GSE345359,A single-nucleus and spatial transcriptomic atlas of the Syrian hamster preoptic area across hibernation states,4,Mesocricetus auratus,Xenium,Xenium,brain,,normal,1,,train
 GSE345643,Human Adult and Pediatric Multimodal Transcriptomic Atlas of Progression from Pressure-Loaded to Failing Right Ventricle [Xenium spatial transcriptomics],6,Homo sapiens,Xenium,Xenium,heart,,disease;normal,6,,test
 GSE345644,Human bladder cell spatial mapping [Xenium],1,Homo sapiens,Xenium,Xenium,bladder,,normal,1,,val