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Dataset card: starter pack with 8 cell-resolution H&E samples

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README.md CHANGED
@@ -40,9 +40,9 @@ approved manually.
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  `spatial.h5ad`, `sample.json` and, for 60 of them, `image.tif`. The pack covers:
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  - 12 platforms, 20 organ groups and 8 species;
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- - 46 H&E images and 14 DAPI or CosMx images;
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- - 42 samples with a reported disease and 79 from published studies;
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- - 3.9 GB in total.
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  The files are byte-identical to the full dataset, and each is checked against its SHA256 when downloaded.
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  `starter/starter.json` lists the samples.
@@ -53,16 +53,16 @@ or:
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  ```bash
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  pip install "spatial-data-agent-db[analysis] @ git+https://github.com/Biogod2020/spatial-data-agent-db"
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  sda-db starter --has-image # list the pack
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- sda-db download GSM4284327 --release starter --include-image # human skin cancer, H&E at 0.76 µm per pixel
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  ```
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  ```python
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  import sda_db
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- adata = sda_db.load("GSM4284327", release="starter", include_image=True)
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  ```
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  From R, or any tool, download a starter sample's files directly, for example
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- `https://huggingface.co/datasets/Biogod/SpatialDataAgent-DB-Catalog/resolve/main/samples/GSE144239/GSM4284327/spatial.h5ad`
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  (also `sample.json` and `image.tif`), and read the H5AD with `zellkonverter::readH5AD`.
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  **All 12,163 samples.** Every file of the release has passed content verification. To download any sample:
 
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  `spatial.h5ad`, `sample.json` and, for 60 of them, `image.tif`. The pack covers:
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  - 12 platforms, 20 organ groups and 8 species;
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+ - 46 H&E images (8 at cell resolution, ≤ 1 µm per pixel) and 14 DAPI or CosMx images;
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+ - 41 samples with a reported disease and 79 from published studies;
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+ - 4.5 GB in total.
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  The files are byte-identical to the full dataset, and each is checked against its SHA256 when downloaded.
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  `starter/starter.json` lists the samples.
 
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  ```bash
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  pip install "spatial-data-agent-db[analysis] @ git+https://github.com/Biogod2020/spatial-data-agent-db"
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  sda-db starter --has-image # list the pack
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+ sda-db download GSM6963121 --release starter --include-image # human liver, Visium H&E at 0.88 µm per pixel
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  ```
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  ```python
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  import sda_db
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+ adata = sda_db.load("GSM6963121", release="starter", include_image=True)
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  ```
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  From R, or any tool, download a starter sample's files directly, for example
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+ `https://huggingface.co/datasets/Biogod/SpatialDataAgent-DB-Catalog/resolve/main/samples/GSE223559/GSM6963121/spatial.h5ad`
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  (also `sample.json` and `image.tif`), and read the H5AD with `zellkonverter::readH5AD`.
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  **All 12,163 samples.** Every file of the release has passed content verification. To download any sample:
assets/dataset-card/v3/08-starter-gallery.png CHANGED

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Git LFS Details

  • SHA256: 53538edd1b12701c0343cd9988b4508ade3f1e90b6d27cedb26956799e19089f
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