published_gse,study_title,n_samples,organisms,platforms,assay_names,organs,diseases,disease_statuses,n_with_image,pubmed_ids,split
GSE111672,Integrating microarray-based spatial transcriptomics and single-cell RNA-seq reveals tissue architecture in pancreatic ductal adenocarcinomas,8,Homo sapiens,ST (legacy),ST (legacy),pancreas,pancreatic ductal adenocarcinoma,disease,0,31932730,val
GSE120374,Spatiotemporal dynamics of molecular pathology in amyotrophic lateral sclerosis,317,Mus musculus,ST (legacy),ST (legacy),spinal cord,amyotrophic lateral sclerosis;hereditary motor neuron disease;lateral sclerosis,normal;disease,0,,train
GSE130682,High-density spatial transcriptomics arrays for in situ tissue profiling,1,Mus musculus,Other,HDST,brain,,normal,1,31501547,train
GSE135805,Spatial Transcriptomics of Human Cardiac Tissue,4,Homo sapiens,ST (legacy),ST (legacy),heart,cardiomyopathy;dilated cardiomyopathy;hypertrophic cardiomyopathy,normal;disease,0,31862877,train
GSE137986,High spatial resolution multi-omics atlas sequencing of mouse embryos,11,Mus musculus,DBiT-seq,DBiT-seq,embryo (whole),,normal,0,33188776,train
GSE144239,Single Cell and Spatial Analysis of Human Squamous Cell Carcinoma [ST],16,Homo sapiens,ST (legacy);Visium,ST (legacy);Visium,skin,squamous cell carcinoma,disease,16,32579974;38037084;41872488,train
GSE147747,Molecular Atlas of the Adult Mouse Brain,75,Mus musculus,ST (legacy),ST (legacy),brain,,normal,75,32637622,train
GSE148612,Neuroinflammatory astrocyte subtypes in the mouse brain,6,Mus musculus,Visium,Visium,brain,,normal;perturbation,6,34413515,test
GSE153424,Clonal relations in the mouse brain revealed by single-cell and spatial transcriptomics,8,Mus musculus,Visium,Visium,brain,,normal,4,35210624,train
GSE153859,The spatial landscape of gene expression isoforms in tissue sections,3,Mus musculus,Visium,Visium,brain,,normal,3,36928528,train
GSE154107,The orchestrated cellular and molecular responses of the kidney to endotoxin define a precise sepsis timeline.,1,Mus musculus,Visium,Visium,kidney,,perturbation,1,33448928,train
GSE155121,The Single-cell and spatial transcriptional landscape of human development,8,Homo sapiens,Visium,Visium,embryo (whole),,normal,0,37192616,train
GSE156862,Spatial transcriptome of FFPE sample by DBiT-seq,5,Mus musculus,DBiT-seq,DBiT-seq,embryo (whole);blood vessel;heart,,normal,0,,train
GSE158328,Spatiotemporal Analysis of Human Intestinal Development at Single Cell Resolution - Spatial Transcriptomics,8,Homo sapiens,Visium,Visium,colon;small intestine,,normal,8,33406409,train
GSE158450,"Cell-type, single-cell, and spatial signatures of brain-region specific splicing in postnatal development",1,Mus musculus,Visium,Visium,brain,,normal,1,33469025;35301264;35604081;36593406,train
GSE158730,NFI transcription factors regulate zonal olfactory receptor expression,4,Mus musculus,Visium,Visium,head and neck;airway,,perturbation,4,36993168,train
GSE159709,Spatially resolved transcriptomics reveals the architecture of the tumor-microenvironment interface,3,Danio rerio,Visium,Visium,skin,melanoma,disease,0,34725363,train
GSE160137,"Single cell- Cluster-RNA seq and Spatial Transcriptomics from the trunk of mouse embryos of different genotypes (wild type, Pax2-GFP, Pax2-GFP; Gata3 knockout) and developmental stages (E8.75, E9.5, E11.5) [Spatial Transcriptomics]",4,Mus musculus,Visium,Visium,other;embryo (whole),,normal;perturbation,4,33976190,train
GSE161318,Spatial RNA sequencing of regenerating mouse hindlimb muscle,3,Mus musculus,Visium,Visium,skeletal muscle,,perturbation,3,34773081,train
GSE161369,Pancreatic Cancer Datasets,8,Homo sapiens,Xenium,Xenium,pancreas,malignant pancreatic neoplasm,disease,7,42649389,test
GSE163631,Nrf1 promotes heart regeneration and repair by regulating proteostasis and redox balance,5,Mus musculus,Visium,Visium,heart,myocardial infarction,disease;perturbation;normal,0,34489413,train
GSE165141,Spatial Transcriptomics to define transcriptional patterns of zonation and structural components in the liver,12,Mus musculus,ST (legacy),ST (legacy),liver,,normal,0,34857782,train
GSE166948,Interleukin-17 governs hypoxic adaptation of injured epithelium [spatial transcriptomics],6,Mus musculus,Visium,Visium,skin,,normal;perturbation;disease,6,35709248,val
GSE169012,Spatial transcriptome analysis (Slide-seq2) of mouse main olfactory bulb,40,Mus musculus,Slide-seq,Slide-seq,brain,,normal,0,35314823;40768336,train
GSE169749,10X Visium Spatial transcriptomics of murine colon in steady state and during recovery after DSS colitis,2,Mus musculus,Visium,Visium,colon,colitis,normal;disease,2,35149721,train
GSE171351,"A new epithelial cell subpopulation predicts response to surgery, chemotherapy, and immunotherapy in bladder cancer",4,Homo sapiens,Visium,Visium,bladder,cancer,disease,4,34385456;37344596,val
GSE171406,Integration of spatial and single cell transcriptomics localizes epithelial-immune cross-talk in kidney injury,3,Homo sapiens;Mus musculus,Visium,Visium,kidney,ischemia reperfusion injury,normal;disease,3,34003797,train
GSE172416,Cell type inference in human lung tissue by domain adaptation of single-cell and spatial transcriptomic data,2,Homo sapiens,Visium,Visium,lung,,normal,2,35191503,val
GSE173651,Single-cell and spatial transcriptomic analysis of homeostatic adult human skin,6,Homo sapiens,Visium,Visium,skin,,normal,6,41872488,train
GSE174265,Neurons burdened by DNA double strand breaks incite microglia activation through antiviral-like signaling in neurodegeneration.,7,Mus musculus,Visium,Visium,brain,,disease;perturbation,0,36170369,train
GSE174313,Spatial transcriptomics reveals a role for sensory nerves in preserving cranial suture patency through modulation of BMP/TGFβ signaling,4,Mus musculus,Visium,Visium,head and neck,,perturbation,4,34663698,train
GSE174321,Spatiotemporal heterogeneity of inflammatory changes in Alzheimer's disease analyzed spatially resolved transcriptome,4,Mus musculus,Visium,Visium,brain,Alzheimer disease,normal;disease,4,38036733,train
GSE174647,Identification of early neurodegenerative pathways in progressive multiple sclerosis,181,Homo sapiens,ST (legacy),ST (legacy),brain,multiple sclerosis,disease,176,35726057,test
GSE175540,Tertiary lymphoid structures generate and propagate anti-tumor antibody-producing plasma cells in renal cell cancer,24,Homo sapiens,Visium,Visium,kidney,renal cell adenocarcinoma,disease,24,35231421,train
GSE176092,Spatiotemporal transcriptome analysis reveals critical roles for mechano-sensing genes at the border zone in remodeling after myocardial infarction,14,Mus musculus,Visium,Visium,heart,myocardial infarction,normal;disease,0,,test
GSE178221,SpotClean adjusts for spot swapping in spatial transcriptomics data,3,Homo sapiens,Visium,Visium,colon;small intestine;heart,,normal,3,35624112,train
GSE178361,Human distal lung maps and lineage hierarchies reveal a bipotent progenitor [Spatial transcriptomics],2,Homo sapiens,Visium,Visium,airway;lung,,normal,2,35355018,train
GSE178636,Spatiotemporal transcriptomes of mouse embryo,4,Mus musculus,Visium,Visium,embryo (whole),,normal,4,36857617,train
GSE178758,Integrated spatial multi-omics reveals fibroblast fate during tissue repair,4,Mus musculus,Visium,Visium,skin,,normal;perturbation,4,34620713,train
GSE179572,Spatial transcriptomics of human brain metastases,6,Homo sapiens,Visium,Visium,brain,brain neoplasm;lung adenocarcinoma;melanoma;nonpapillary renal cell carcinoma;breast carcinoma,disease,6,35584630;35707680,train
GSE180682,Spatial transcriptomics reveals increased energetic requirements underpinning age-dependent declines in digit regeneration rescued through administration of OAA,8,Mus musculus,Visium,Visium,other,,perturbation,8,35616636,train
GSE181300,Visium Analysis of head and neck squamous carcinoma (HNSCC) spatial transcriptome evolution,8,Homo sapiens,Visium,Visium,head and neck,head and neck squamous cell carcinoma,disease,8,36002186,val
GSE182127,Spatial transcriptome analysis defines heme as a hemopexin-targetable inflammatoxin in the brain,7,Mus musculus,Visium,Visium,brain,,normal;perturbation,7,34793930,train
GSE182208,Endothelial Phospholipase C gamma2 Improves Outcomes of Diabetic Ischemic Limb Rescue Following VEGF Therapy,1,Homo sapiens,Visium,Visium,skin,,normal,1,35192691;42552235,val
GSE182867,Dietary palmitic acid promotes a prometastatic memory based on Schwann Cell activation,4,Homo sapiens,Visium,Visium,other,neoplasm,disease,4,34759321,val
GSE182939,Spatially resolved transcriptomic analysis of acute kidney injury in a female murine model,5,Mus musculus,Visium,Visium,kidney,acute kidney injury,perturbation;disease,5,34853151,train
GSE183279,An atlas of healthy and injured cell states and niches in the human kidney,44,Homo sapiens,Slide-seq,Slide-seq,kidney,,normal,0,37468583;39691368;39916957,train
GSE183456,Spatial localization with Spatial Transcriptomics for an atlas of healthy and injured cell states and niches in the human kidney [Visium ST],22,Homo sapiens,Visium,Visium,kidney,diabetic kidney disease;diabetes mellitus;acute kidney injury,normal;disease,22,37468583;39691368,train
GSE184369,The neurons that restore walking after paralysis [spatial transcriptomics],15,Mus musculus,Visium,Visium,spinal cord,,normal,15,36352232,train
GSE184371,The neurons that restore walking after paralysis,1,Mus musculus,Visium,Visium,spinal cord,,normal,0,36352232,train
GSE184384,Epithelial Plasticity and Innate Immune Activation Promote Lung Tissue Remodeling following Respiratory Viral Infection.,2,Mus musculus,Visium,Visium,lung,viral infectious disease,disease,2,37726288,train
GSE184510,Spatial transcriptomics: The effect of consecutive slices data integration on accurate cell type annotation and clustering,8,Homo sapiens,Visium,Visium,brain,,normal;not stated,7,37081484,train
GSE185386,Melanoma Brain Metastasis Atlas,15,Homo sapiens,Slide-seq,Slide-seqV2,brain;other,melanoma,disease,0,35803246,train
GSE185477,"Single-Cell, Single-Nucleus and Spatial RNA Sequencing of the Human Liver Identifies Hepatic Stellate Cell and Cholangiocyte Heterogeneity",1,Homo sapiens,Visium,Visium,liver,,normal,1,34792289,train
GSE185715,Genome-wide Spatial Expression Profiling in Formalin-fixed Tissues,14,Homo sapiens;Mus musculus,Visium,Visium,kidney;lung;brain,,normal,14,36776149,train
GSE186097,Polony gels enable amplifiable DNA stamping and spatial transcriptomics of chronic pain,2,Mus musculus,Other,Pixel-seq,brain,,normal,0,36368323,train
GSE186290,Spatial transcriptome analysis of gastric cancer which GAN-KP transplanted C57BL/6J mouse,1,Mus musculus,Visium,Visium,stomach,gastric cancer,disease,1,34931404,train
GSE186818,Spatial transcriptome analysis of brain region in grass puffer (Takifugu alboplumbeus),1,Takifugu alboplumbeus,Visium,Visium,brain,,normal,1,36306789,train
GSE188257,Spatial transcriptomics of the ageing ovary,4,Mus musculus,Visium,Visium,ovary,,normal,4,35996587,train
GSE188888,"Characterizing Neonatal Heart Maturation, Regeneration, and Scar Resolution Using Spatial Transcriptomics [spatial]",4,Mus musculus,Visium,Visium,heart,,perturbation,4,35050211,val
GSE189042,Spatial transcriptome analysis reveals the lymph node atlas of breast cancer metastases,1,Homo sapiens,Visium,Visium,lymph node,luminal B breast carcinoma,disease,1,,train
GSE189184,Divergent spatial microdomains drive inflammation and repair in Ulcerative and Immune Checkpoint Therapy Colitis - Spatial Transcriptomics,16,Homo sapiens,Visium,Visium,colon,ulcerative colitis;colitis,disease;normal,16,38744246,train
GSE189487,Spatiotemporal transcriptional atlas of lung adenocarcinoma from adenocarcinoma in situ to invasive carcinoma [ST],6,Homo sapiens,Visium,Visium,lung,lung adenocarcinoma;invasive carcinoma;adenocarcinoma in situ,disease,0,36434043,train
GSE190094,High Resolution Slide-seqV2 Spatial Transcriptomics Enables Discovery of Disease-Specific Cell Neighborhoods and Pathways,84,Mus musculus,Slide-seq,Slide-seqV2,kidney,diabetic kidney disease;diabetes mellitus,normal;disease,0,35372810,train
GSE190595,10X Visium Spatial transcriptomics of murine colon at d14 (mucosa healing) in B cell sufficient/deficient mice,2,Mus musculus,Visium,Visium,colon,,normal;perturbation,2,35149721,train
GSE190811,Single cell profiling of primary and paired metastatic lymph node tumors in breast cancer patients (10x Visium),4,Homo sapiens,Visium,Visium,lymph node,invasive ductal breast carcinoma;lymph node neoplasm,disease,4,36357424,train
GSE190910,Fibroblasts orchestrate the pathogenesis of fibrotic and glial scar in spinal cord injury,8,Mus musculus,Visium,Visium,spinal cord,spinal cord injury,disease;normal,8,,train
GSE192402,"Multi-modal single-cell and whole-genome sequencing of minute, frozen specimens to propel clinical applications",2,Homo sapiens,Slide-seq,Slide-seqV2,other,melanoma,disease,0,36624340,train
GSE192460,Single-cell and spatial architecture of human tissue granulomas reveals an aberrant immune-regulatory program underlying sarcoidosis [spatial transcriptomics data],21,Homo sapiens,Visium,Visium,skin,sarcoidosis,disease,0,36750099,val
GSE192742,Spatial proteogenomics reveals distinct and evolutionarily-conserved hepatic macrophage niches,15,Mus musculus;Homo sapiens,Visium,Visium,liver,,normal;disease,15,35021063;36304458,train
GSE193107,Spatial transcriptomic profiling of the aging mouse brain [spatial scRNA-seq],8,Mus musculus,Visium,Visium,brain,,normal,8,38372175,train
GSE193460,Perturb-map coupled with spatial transcriptomics identifies mutation associated gene signatures in a mouse model of lung adenocarcinoma,4,Mus musculus,Visium,Visium,lung,lung adenocarcinoma,disease,3,35290801,train
GSE194329,Spatial multi-omics reveals vulnerabilities of radial glia-like cancer-initiating cells within distinct ecosystems of pediatric and adult malignant gliomas,11,Homo sapiens,Visium,Visium,brain,malignant glioma;glioblastoma,disease,11,36823172;40483536,train
GSE194338,Excitatory SST neurons in the medial paralemniscal nucleus control repetitive self-grooming and encode reward,1,Mus musculus,Visium,Visium,brain,,perturbation,1,,train
GSE195575,mousemodel_Heptablastoma spatial transcriptomics,6,Mus musculus,Visium,Visium,liver,hepatoblastoma,disease,6,37414763,test
GSE195598,Spatial Transcriptomics of Joint-Draining Popliteal Lymph Nodes from Wild-type and TNF-Tg Mice with Early and Advanced Inflammatory-Erosive Arthritis,4,Mus musculus,Visium,Visium,lymph node,arthritic joint disease,normal;disease,4,37691918,train
GSE195661,Spatial transcriptomics reveal unnresolved wound repair as potential driver of PFA Ependymoma progression,14,Homo sapiens,Visium,Visium,brain,ependymoma,disease,14,36215273,val
GSE196208,Single-Cell Transcriptome Profiling Reveals Intratumoral Heterogeneity and Molecular Features in Ductal Carcinoma In Situ of the Breast,1,Homo sapiens,Visium,Visium,breast,ductal breast carcinoma in situ,disease,1,35852797,train
GSE196506,Spatial Transcriptomics-based Identification of Molecular Markers for Nanomedicine Distribution in Tumor Tissue,1,Mus musculus,Visium,Visium,breast,breast cancer,disease,0,36180396,train
GSE197023,Spatial transcriptomics combined with single-cell RNA-sequencing unravels the complex inflammatory cell network in atopic dermatitis [ST],19,Homo sapiens,Visium,Visium,skin,atopic eczema,disease;normal,19,37312623,train
GSE197150,multiplexed RNA imaging of human forebrain organoids from typical and autism subjects [MERFISH],71,Homo sapiens,MERFISH/MERSCOPE,MERFISH,brain,autism,normal;disease,0,42288509,train
GSE197317,Single cell transcriptomic and spatial landscapes of the developing human pancreas - spatial transcriptomics,6,Homo sapiens,Visium,Visium,pancreas,,normal,6,36513063,test
GSE198012,Obesity disrupts innate-adaptive immune network patterning in adipose tissue,4,Mus musculus,Visium,Visium,adipose tissue,obesity disorder,normal;disease,0,37651193,val
GSE198128,Spatiotemporal transcriptomes of orchid flowers,3,Phalaenopsis aphrodite,Visium,Visium,plant,,normal,3,36095130,train
GSE198353,Integration of whole transcriptome spatial profiling with protein markers,3,Mus musculus,Visium,Visium,spleen;breast,breast cancer,normal;disease,3,36593397,train
GSE198745,Single-cell and spatially resolved analysis uncovers cell heterogeneity of breast cancer,1,Homo sapiens,Visium,Visium,breast,breast cancer,disease,1,35241110,train
GSE199348,Molecular and cellular characterization of planarian stem cell microenvironments,4,Schmidtea mediterranea,Slide-seq,Slide-seqV2,other,,perturbation,0,,train
GSE199659,"Spatial transcriptomics (Visium, 10x Genomics) data of Duchenne mouse models",4,Mus musculus,Visium,Visium,skeletal muscle,Duchenne muscular dystrophy,normal;disease,4,37582915,val
GSE200310,Spatial transcriptome sequencing of primary nasopharyngeal carcinoma tissues,2,Homo sapiens,Visium,Visium,head and neck,nasopharyngeal carcinoma,disease,2,37024479,train
GSE200720,Spatial RNA-sequencing of day7 and day 21 post-LCMV Cl13 infection following transient CD4+ T cell depletion (Visium),8,Mus musculus,Visium,Visium,spleen,infectious disease,disease,8,36450262,val
GSE200751,MacroH2A restricts melanoma progression via inhibition of chemokine expression in cancer-associated fibroblasts.,2,Mus musculus,Visium,Visium,skin,melanoma;cancer,disease,2,37605008,train
GSE201610,Spatial RNA sequencing of mouses brain slices following spatial object recognition training,6,Mus musculus,Visium,Visium,brain,,normal;perturbation,6,37773230,train
GSE202011,Spatial transcriptomics stratifies psoriatic disease by emergent cellular ecosystems,30,Homo sapiens,Visium,Visium,skin,psoriasis;psoriatic arthritis,disease;normal,29,37267384;41743834,train
GSE202322,Spatial sequencing of young and aged lungs following influenza A virus infection,6,Mus musculus,Visium,Visium,lung,influenza,disease,6,37852965,test
GSE202623,Spatial Transcriptomics correlated Electron Microscopy [MERFISH],3,Mus musculus,MERFISH/MERSCOPE,MERFISH,brain,,normal,0,37433806,test
GSE203424,INPP5D limits plaque formation and glial reactivity in the APP/PS1 mouse model of Alzheimer’s disease,12,Mus musculus,Visium,Visium,brain,Alzheimer disease,perturbation;disease;normal,12,36448627,train
GSE203552,Intratumor heterogeneity and T cell exhaustion in primary CNS lymphoma,4,Homo sapiens,Visium,Visium,brain,primary central nervous system lymphoma,disease,4,36153593,test
GSE203612,Cancer cell states recur across tumor types and form specific interactions with the tumor microenvironment,12,Homo sapiens,Visium,Visium,breast;stomach;liver;ovary;pancreas;uterus;other,breast carcinoma;cancer;hepatocellular carcinoma;ovarian carcinoma;pancreatic ductal adenocarcinoma;endometrial carcinoma;melanoma,disease,12,35931863,train
GSE205054,Spatial epigenome-transcriptome co-profiling of mammalian tissues [RNA-Seq],4,Mus musculus,DBiT-seq,DBiT-seq,brain;embryo (whole),,normal,0,36922587;39870864,train
GSE205055,Spatial epigenome-transcriptome co-profiling of mammalian tissues,7,Homo sapiens;Mus musculus,DBiT-seq,DBiT-seq,brain,,normal,0,36922587;39870864,train
GSE205307,Single-cell RNA sequencing reveals myeloid and T cell co-stimulation mediated by IL-7 anti-cancer immunotherapy,2,Mus musculus,Visium,Visium,unknown,cancer,disease,2,38424167,test
GSE205707,Spatiotemporal mapping of immune and stem cell dysregulation after volumetric muscle loss,14,Mus musculus;Canis lupus familiaris,Visium,Visium,skeletal muscle,,perturbation,6,,val
GSE206245,Single-Cell and Spatial Transcriptome Analyses Reveal Tertiary Lymphoid Structures Linked to Tumour Progression and Immunotherapy Response in Nasopharyngeal Carcinoma,17,Homo sapiens,Visium;ST (legacy),Visium;ST (legacy),airway;stomach,nasopharyngeal carcinoma;gastric cancer;carcinoma;epithelial neoplasm,disease,14,39231979,train
GSE206306,A Spatial Transcriptomic atlas of the human kidney papilla identifies significant immune injury in patients with stone disease,7,Homo sapiens,Visium,Visium,kidney,,normal;disease,7,37468493,train
GSE206552,Spatial resolution of cellular senescence dynamics in colorectal liver metastasis,4,Homo sapiens,Visium,Visium,liver,metastatic malignant neoplasm in the liver,disease,4,37157887,train
GSE206621,Mapping the Spatial Dynamics of the Human Oral Mucosa in Chronic Inflammatory Disease,8,Homo sapiens,Visium,Visium,oral cavity,inflammatory disease,normal;disease,8,36648332,train
GSE206787,Spatiotemporal signaling underlies progressive vascular rarefaction in myocardial infarction,4,Mus musculus,Visium,Visium,heart,myocardial infarction,normal;disease,4,38129410,train
GSE206790,Profibrotic subsets of SPP1+ macrophages and POSTN+ fibroblasts contribute to fibrotic scarring in acne keloidalis,1,Homo sapiens,Visium,Visium,skin,acne,disease,1,38218364,train
GSE207205,Multimodal human thymic profiling reveals trajectories and cellular milieu for T agonist selection [Spatial transcriptomics],8,Homo sapiens,Visium,Visium,thymus,,normal,8,36741401,train
GSE207546,Choroid plexus mast cells drive tumor-associated hydrocephalus,3,Mus musculus,Visium,Visium,brain,neoplasm;hydrocephalus,disease,3,38056463,train
GSE207843,Spatial Transcriptomics Using Multiplexed Deterministic Barcoding in Tissue,18,Mus musculus,DBiT-seq,DBiT-seq,spleen;heart;liver;kidney;brain;pancreas,,normal,0,36934108,train
GSE208253,Spatial transcriptomics reveals distinct and conserved tumor core and edge architectures that predict survival and targeted therapy response,12,Homo sapiens,Visium,Visium,oral cavity,oral cavity squamous cell carcinoma,disease,12,37596273,train
GSE208747,Decoding spatial gene activity changes in multiple sclerosis lesion progression,26,Homo sapiens,Visium,Visium,brain,multiple sclerosis,disease;normal,26,39501035,test
GSE209583,"Spatial transcriptomics analysis of wild type, 5XFAD mice, 5XFAD mice treated with either vehicle or human neural stem cells (hNSC)",14,Mus musculus,Visium,Visium,brain,Alzheimer disease,disease;normal,14,38155736,train
GSE210041,Mesenchymal-like tumor cells and myofibroblastic cancer-associated fibroblasts are associated with progression and immunotherapy response of clear-cell renal cell carcinoma [spatial transcriptomics],2,Homo sapiens,Visium,Visium,kidney,clear cell renal carcinoma,disease,2,37335139,train
GSE210380,Visium spatial transcriptomics analysis of lacrimal gland during chronic inflammation progression.,4,Mus musculus,Visium,Visium,eye,,normal;disease,4,36341342,train
GSE210616,Spatial transcriptomics of triple negative breast cancer,43,Homo sapiens,Visium,Visium,breast,triple-negative breast carcinoma,disease,43,36283023,train
GSE210637,"ER, mitochondria and ISR regulation by mt-HSP70 and ATF5 upon procollagen misfolding (proximal tibia srRNASeq)",6,Mus musculus,Visium,Visium,bone,,disease;perturbation,6,35988140,val
GSE210738,Spatial transcriptomics revealing host-microbe interactions,2,Mus musculus,Visium,Visium,small intestine;colon,,normal,0,,test
GSE210773,Spatial transcriptomics tools allow for regional exploration of heterogeneous muscle pathology in the pre-clinical rabbit model of rotator cuff tear,4,Oryctolagus cuniculus,Visium,Visium,skeletal muscle,,perturbation;disease;normal,4,36195913,train
GSE211785,Spatially resolved human kidney multi-omics single cell atlas highlights the key role of fibrotic microenvironment in kidney disease progression.,4,Homo sapiens,Visium,Visium,kidney,diabetic kidney disease;chronic kidney disease,disease,4,38217002;38514613;39048792;40796935;41376591,train
GSE211895,Assessment of Spatial Genomics for Oncology Discovery,29,Rattus norvegicus;Homo sapiens;Mus musculus,Visium,Visium,colon;pancreas;other,malignant pancreatic neoplasm;neoplasm,not stated;normal;disease,29,36452860,val
GSE211956,Spatial transcriptomics reveals ovarian cancer subclones with different microenvironments,8,Homo sapiens,Visium,Visium,ovary,ovarian cancer,disease,8,38570491,train
GSE212323,"APOE modulates microglial immunometabolism in response to age, amyloid pathology, and inflammatory challenge [Spatial transcriptomics]",6,Mus musculus,Visium,Visium,brain,,normal;perturbation,6,36871219,train
GSE212526,Spatial transcriptomics analysis of soft tissue sarcomas.,4,Homo sapiens,Visium,Visium,other,undifferentiated pleomorphic sarcoma;leiomyosarcoma,disease,4,38429415,train
GSE212706,Multiomic analysis reveals conservation of cancer associated fibroblast phenotypes across species and tissue of origin [spatial trascriptomics],6,Mus musculus,Visium,Visium,breast,breast neoplasm;cancer,disease;normal,6,,train
GSE212903,Spatial transcriptomics of the mouse brain across three age groups,6,Mus musculus,Visium,Visium,brain,,normal,6,37591239,train
GSE213216,A single-cell transcriptomic analysis of endometriosis,2,Homo sapiens,Visium,Visium,other;peritoneum,endometriosis,disease,2,36624343;38370978,train
GSE213264,High-plex protein and whole transcriptome co-mapping at cellular resolution with spatial CITE-seq,18,Mus musculus;Homo sapiens,DBiT-seq,DBiT-seq,spleen;colon;small intestine;kidney;tonsil;thymus;skin;brain,glioblastoma,normal;disease,0,36823353;39095360,train
GSE213286,Craters on the melanoma surface serve as hubs for CD8+ T cells,1,Danio rerio,Slide-seq,Slide-seq,skin,melanoma,disease,0,41109214,train
GSE213306,Spatial transcriptomic analysis of human oligodendrocyte development across gestational weeks 10 to 24,8,Homo sapiens,Visium,Visium,brain,,normal,0,41509247,train
GSE213388,Periportal macrophages protect against commensal-driven liver inflammation [spatial transcriptomics],4,Mus musculus,Visium,Visium,liver,,normal,4,38658756,val
GSE213666,Multi-omics profiling visualizes dynamics of cardiac development and functions,1,Mus musculus,Visium,Visium,heart,,normal,1,36577384,train
GSE213688,Spatial transcriptomics of human plastic and non-plastic breast cancer subtypes,15,Homo sapiens,Visium,Visium,breast,breast cancer,normal;disease,15,37813278,train
GSE213699,Spatial transcriptomics of ovarian cancer tumors,8,Homo sapiens,Visium,Visium,ovary;peritoneum,fallopian tube carcinoma;ovarian cancer;ovarian carcinoma;carcinoma;high grade malignant neoplasm,disease,8,36249907,train
GSE214138,Spatially resolved multi-omic profiling of human hippocampus reveals region-specific alterations in major depressive disorder [RNA-seq],13,Homo sapiens,DBiT-seq,DBiT-seq,brain,major depressive disorder,normal;disease,0,,train
GSE214349,Discovering Haematoma-Stimulated Circuits for Secondary Brain Injury after Intraventricular Haemorrhage by Spatial Transcriptome Analysis,19,Mus musculus,Visium,Visium,brain,brain injury,disease;normal;perturbation,19,36825001,train
GSE214363,Spatial transcriptomics data of GAN-KP tumor treated with regorafenib,2,Mus musculus,Visium,Visium,other,gastric cancer,disease,2,36543251,train
GSE214571,Spatial transcriptomics reveals functional compartmentalization of estrogen receptor positive (ER+) breast cancer,4,Homo sapiens,Visium,Visium,breast,estrogen-receptor positive breast cancer,disease,4,38282415,train
GSE214611,Single Cell Spatial Transcriptomics Redefines the Borderzone induced by Myocardial Infarction and Mechanical Injury,14,Mus musculus;Homo sapiens,Visium,Visium,heart,myocardial infarction,disease,14,39086770,train
GSE214989,Spatial transcriptomics profiling of the developing mouse embryo,1,Mus musculus,Visium,Visium,embryo (whole),,normal,1,36604544,train
GSE215305,Muscle injury induces a transient senescence-like state that is required for myofiber growth during muscle regeneration [Spatial Transcriptomics],1,Mus musculus,Visium,Visium,skeletal muscle,Duchenne muscular dystrophy,disease,1,36190443,train
GSE215361,Conserved transcriptional connectivity of regulatory T cells in the tumor microenvironment informs novel combination cancer therapy strategies [visium],8,Mus musculus,Visium,Visium,lung,cancer,disease,8,37127830,train
GSE215897,A topographic atlas defines developmental origins of cell heterogeneity in the human embryonic lung [ST],34,Homo sapiens,Visium,Visium,lung,,normal,34,36646791,train
GSE215994,Spatial transcriptomics on human dorsal root ganglion (DRG),2,Homo sapiens,Visium,Visium,peripheral nerve,,normal,2,37664243,train
GSE216189,Fragment-sequencing unveils local tissue microenvironments at single cell resolution,2,Mus musculus,Visium,Visium,liver,malignant colon neoplasm,disease,2,38012149,train
GSE216214,Defining the spatial-molecular map of fibrotic tendon healing and the drivers of Scleraxis-lineage cell fate and function,8,Mus musculus,Visium,Visium,other,,normal;perturbation,8,36417854,train
GSE216542,"scRNA-seq, snATAC-seq, and spatial transcriptomics analysis of mammary glands of aged female mice",4,Mus musculus,Visium,Visium,breast,,normal,4,39587369,train
GSE216992,Spatial transcriptomic profiling of Patient and Patient-corrected bioengineered vascular grafts.,4,Homo sapiens,Visium,Visium,blood vessel,,disease;normal,4,38718134,val
GSE217058,Probing pathways by which rhynchophylline modifies sleep using spatial transcriptomics,8,Mus musculus,Visium,Visium,brain,,normal;perturbation,8,37143153,train
GSE217237,Prospective transcriptional landscape of ectocervix samples from Kenyan cohort,18,Homo sapiens,Visium,Visium,uterus,,normal;disease;not stated,18,35533147;37004130;39439565;39687623;39762272;41218071,train
GSE217414,Liver metastases originating from 4 colorectal cancer patients (CRC-LM).,4,Homo sapiens,Visium,Visium,liver,metastatic malignant neoplasm in the liver;colorectal carcinoma,disease,4,37144485,test
GSE217615,Cellular profiling of a recently-evolved social behavior [spatial transcriptomics],13,Mchenga conophoros,Visium,Visium,brain,,normal,13,37580322,val
GSE217664,Decoding Trp53 regulatory program in various tissues and organs,3,Mus musculus,BMK S1000,BMKMANU S1000/S3000,thymus,,perturbation;normal,0,40887856,train
GSE217828,YAP Drives Assembly of a Spatially Colocalized Cellular Triad Required for Heart Renewal,2,Mus musculus,Visium,Visium,heart,,perturbation,2,38510108,train
GSE217843,IL-1b+ tumor-associated macrophages fuel pathogenic inflammation in pancreatic cancer - Spatial transcriptomics of mouse PDAC samples,2,Mus musculus,Visium,Visium,pancreas,pancreatic ductal adenocarcinoma,disease,2,37914939,train
GSE217847,IL-1b+ tumor-associated macrophages fuel pathogenic inflammation in pancreatic cancer,13,Homo sapiens,Other,not named in GEO,pancreas,pancreatic ductal adenocarcinoma,disease,0,37914939,train
GSE218046,Spatial transcriptomic analysis of a pre-clinical NF1 pseudarthrosis fracture model,2,Mus musculus,Visium,Visium,bone,tibia fracture;neurofibromatosis type 1,disease,2,38990653,train
GSE218539,Spatial Transcriptomics in the Human Left Atrial Appendage and Pulmonary Vein Sleeve,12,Homo sapiens,Visium,Visium,blood vessel;heart,,normal,12,41314481,train
GSE218761,Cardiac reprogramming and Gata4 overexpression reduce fibrosis and improve diastolic dysfunction in heart failure with preserved ejection fraction,3,Mus musculus,Visium,Visium,heart,heart failure,normal;disease,3,39673349,test
GSE218951,Starfysh reveals heterogeneous spatial dynamics in the breast tumor microenvironment,8,Homo sapiens,Visium,Visium,breast,breast cancer;triple-negative breast carcinoma,disease,8,,train
GSE218970,A Spatial Transcriptome for Germinating Barley Grain,24,Hordeum vulgare,Visium,Visium,plant,,normal,24,37351575,train
GSE219120,Spatiotemporal multi-omics decoding of the developing human spinal cord I,24,Homo sapiens,Visium,Visium,spinal cord,,normal,24,37095395,train
GSE220218,Insulin-like growth factor I reduces coronary atherosclerosis in pigs with familial hypercholesterolemia,4,Sus scrofa,Visium,Visium,blood vessel,coronary atherosclerosis;familial hypercholesterolemia,disease,4,36602878,train
GSE220572,Reconstruction of 3-dimensional tissue organization at the single-cell resolution [ST],2,Homo sapiens,Visium,Visium,skin,,normal,2,36711844;38915088,train
GSE220799,Spatial gene expression profile of the brain from WT and Sema6d-/- mice,4,Mus musculus,Visium,Visium,brain,,normal;perturbation,4,39002542,train
GSE220817,neuroendocrine control of planarian regeneration (Spatial transcriptome),1,Schmidtea mediterranea,Visium,Visium,other,,perturbation,0,,train
GSE220978,Spatial Multi-omics Reveals the Heterogeneity of Tumor Microenvironment in the OSF-Associated OSCC,4,Homo sapiens,Visium,Visium,oral cavity,oral cavity squamous cell carcinoma,disease,4,38229179,train
GSE221106,Spatial analysis of microglial and vascular responses following recurrent intranasal Group A Streptococcus infections,8,Mus musculus,MERFISH/MERSCOPE,MERFISH,brain,infectious disease,perturbation;disease,0,,val
GSE221359,In vivo macrophage engineering reshapes the tumor microenvironment leading to eradication of liver metastases [Visium],8,Mus musculus,Visium,Visium,liver,metastatic malignant neoplasm in the liver;colorectal carcinoma,disease,8,37863068,train
GSE221571,Spatially resolved transcriptomic profiling of degraded and challenging fresh frozen samples,14,Mus musculus,Visium,Visium,bone;brain,,normal,14,36720873,train
GSE222322,Spatial transcriptomics on human lumbar spinal cord,20,Homo sapiens,Visium,Visium,spinal cord,,not stated;normal,20,36731429,val
GSE222383,Developmental Deficits of MGE-derived Interneurons in the Cntnap2 Knockout Mouse Model of Autism Spectrum Disorder,1,Mus musculus,Stereo-seq,Stereo-seq,brain,autism,disease,0,36819097,train
GSE222410,Spatial transcriptomics reveals unique gene expression changes in different brain regions after sleep deprivation,16,Mus musculus,Visium,Visium,brain,,perturbation;normal,16,37925446,train
GSE222981,Moxibustion Improves Hypothalamus Aqp4 Polarization in APP/PS1 Mice: Evidence from Spatial Transcriptomics,3,Mus musculus,Visium,Visium,brain,Alzheimer disease,normal;disease,3,36819717,train
GSE223020,Three-dimensional molecular cartography of human cerebral organoids revealed by double-barcoded spatial transcriptomics,15,Homo sapiens,ST (legacy),ST (legacy),brain,,normal,0,37751695,train
GSE223066,Mapping the spatial transcriptomic signature of the hippocampus during memory consolidation,8,Mus musculus,Visium,Visium,brain,,normal,8,37773230,train
GSE223501,Non-small Cell Lung Cancer Brain Metastasis Atlas [slide-seq],12,Homo sapiens,Slide-seq,Slide-seq,brain;lung,non-small cell lung carcinoma,disease,0,40016452,train
GSE223559,Multimodal decoding of human liver regeneration [st_human],8,Homo sapiens,Visium,Visium,liver,,disease;normal,8,38693268,train
GSE223560,Multimodal decoding of human liver regeneration [st_mouse],11,Mus musculus,Visium,Visium,liver,liver disorder,normal;disease,11,38693268,test
GSE223813,Spatiotemporal transcriptomic mapping of regenerative inflammation in skeletal muscle reveals a dynamic multilayered tissue architecture,7,Mus musculus,Visium,Visium,skeletal muscle,Duchenne muscular dystrophy,perturbation;disease,7,39190487,train
GSE224210,Single cell and spatial transcriptomic profile of whole CLAD and donor control lung tissue,4,Homo sapiens,Visium,Visium,lung,,disease;normal,4,36946463,train
GSE224336,Targeting PDGF signaling of cancer-associated fibroblasts blocks feedback activation of HIF-1α and overcomes chemoresistance in ovarian clear cell carcinoma,2,Homo sapiens,Visium,Visium,ovary,carcinoma,disease,2,38670097,train
GSE224360,PREGNANCY-RESPONSIVE POOLS OF ADULT NEURAL STEM CELLS FOR TRANSIENT NEUROGENESIS IN MOTHERS,4,Mus musculus,Visium,Visium,brain,,normal;perturbation,4,37995223,train
GSE224411,Uncovering the spatial landscape of molecular interactions within the tumor microenvironment through latent spaces,3,Homo sapiens,Visium,Visium,liver;pancreas;lymph node,hepatocellular carcinoma;neoplasm;pancreatic ductal adenocarcinoma,disease,3,37080163;37591207,test
GSE224477,ETMR stem-like state and chemo-resistance are supported by perivascular cells at single-cell resolution (spatial transcriptomics subset),3,Homo sapiens,Visium,Visium,brain,brain neoplasm,disease,3,40562749,test
GSE225475,Single Cell and Spatial Sequencing Define Processes by which Keratinocytes and Fibroblasts Amplify Inflammatory Responses in Psoriasis,6,Homo sapiens,Visium,Visium,skin,psoriasis,normal;disease,6,37308489,val
GSE225690,Netrin-1 blockade induces tumor growth inhibition and EMT reversion in endometrial cancer [visium data],4,Homo sapiens,Visium,Visium,unknown,endometrial cancer,disease,4,37532934,train
GSE225766,A cellular and molecular spatial atlas of dystrophic muscle,11,Mus musculus,Visium,Visium,skeletal muscle,Duchenne muscular dystrophy,normal;disease;perturbation,10,37410813,test
GSE225857,Single-cell and spatial transcriptome analysis reveals the cellular heterogeneity of liver metastatic colorectal cancer,6,Homo sapiens,Visium,Visium,colon;liver,colorectal cancer;metastatic neoplasm,disease,6,37327339,train
GSE226097,A Single-Nucleus Atlas of Seed-to-Seed Development in Arabidopsis,1,Arabidopsis thaliana,Slide-seq,Slide-seq,plant,,normal,0,40830271,test
GSE226208,"Shared inflammatory glial cell signature after brain injury, revealed by spatial, temporal and cell-type-specific profiling of the murine cerebral cortex [spatial transcriptomics]",2,Mus musculus,Visium,Visium,brain,nervous system injury,normal;disease,2,38570482;39179527,train
GSE226430,Spatiotemporal understanding of healthy and disordered early pregnancy governed by immune-featured stromal cells,3,Mus musculus,Stereo-seq,Stereo-seq,uterus,,normal,0,37699390,train
GSE226533,Human and Murine Kidneys Contain Transcriptionally and Spatially Orthologous Resident Macrophage Subpopulations in Acute Kidney Injury,2,Homo sapiens,Visium,Visium,kidney,acute kidney injury,disease,2,,train
GSE226663,"Common Mitochondrial Deletions in RNA-Seq: Evaluation of Bulk, Single-Cell and Spatial Transcriptomic Datasets",8,Homo sapiens,Visium,Visium,brain,Alzheimer disease;Parkinson disease,normal;disease,8,38368460,train
GSE226760,The Triptryium wilfordii derivative celastrol has anti-fibrotic effects in systemic sclerosis [Spatial Transcriptomics],8,Mus musculus,Visium,Visium,skin,systemic sclerosis;skin disorder;scleroderma,normal;disease,8,37328193,train
GSE226997,Visium Spatial transcriptomics analysis of human primary colorectal cancer,4,Homo sapiens,Visium,Visium,colon,colorectal cancer,disease,4,38446659,train
GSE227019,Comparison of the Illumina NextSeq 2000 and GeneMind Genolab M sequencing platforms for spatial transcriptomics,3,Homo sapiens,Visium,Visium,ovary,ovarian cancer,disease,3,36882687,test
GSE227046,High resolution spatially resolved transcriptomic atlas of kidney injury and repair by RNA hybridization-based in situ sequencing,7,Mus musculus,Other;Visium,ISS (Cartana);Visium,kidney,,normal;perturbation,1,38360882,train
GSE227332,The transcription factor Zfp281 serves redundantly with Zfp148 to support CD4+ T cell development and functions [Thymus Visium],6,Mus musculus,Visium,Visium,thymus,,normal;perturbation,6,37948511,test
GSE227598,Time-series spatial transcriptomic analysis of murine colon undergoing AOM-DSS tumorigenesis with and without LXR activation,5,Mus musculus,Visium,Visium,colon,,normal;disease,5,39567700,train
GSE227742,Time-series spatial transcriptomic analysis of murine small intestine (SI) undergoing irradiation induced injury-repair with and without LXR activation,4,Mus musculus,Visium,Visium,small intestine,,normal;perturbation,4,39567700,train
GSE228056,A spatial transcriptomics study of splenic marginal zone lymphomas (SMZL) and spleen healthy donor,4,Homo sapiens,Visium,Visium,spleen,splenic marginal zone lymphoma,disease;normal,4,38828498;40374674,train
GSE228169,Human Cortical Kidney Sections,2,Homo sapiens,Visium,Visium,kidney,acute kidney injury,disease,2,,train
GSE228195,Hepatocyte-macrophage crosstalk via the PGRN-EGFR axis modulates ADAR1-mediated immunity in the liver -Spatial Transcriptomics,9,Mus musculus,Visium,Visium,liver,,perturbation,9,38935501,val
GSE228360,Spatial and single cell transcriptomics reveals cellular crosstalk changes in ileal Crohn’s disease during inflammation,12,Homo sapiens,Visium,Visium,small intestine,Crohn disease,disease,12,40059828,val
GSE228394,Characterization of stress-susceptible cells and gene in mouse brain via Spatial Transcriptomics,3,Mus musculus,Visium,Visium,brain,,normal,3,38264685,train
GSE228516,Aristolochic Acid Nephropathy 2 week time point of CD45+ cells,1,Mus musculus,Visium,Visium,kidney,Balkan nephropathy;chronic kidney disease,disease,1,,train
GSE228534,Spatial transcriptomic profiling reveals local and domain-establishing regulatory signaling networks within the bone marrow,4,Mus musculus,Visium,Visium,bone,,normal,4,37926705,test
GSE228685,Spatial transcriptomics of adenoid cystic carcinoma of the lacrimal gland,1,Homo sapiens,Visium,Visium,eye,lacrimal gland carcinoma;adenoid cystic carcinoma,disease,1,37370820,train
GSE228982,Molecular reframing of fibroblasts during resolution of arthritis,4,Homo sapiens,Visium,Visium,other,psoriatic arthritis,disease;normal,4,38396288,train
GSE229175,Visium spatial transcriptomics of the neural complex of Ciona intestinalis type A,4,Ciona intestinalis,Visium,Visium,brain,,normal,4,40970208,train
GSE229508,Spatial transcriptome of developmental mouse brain reveals temporal dynamics of gene expressions and heterogeneity of the claustrum,2,Mus musculus,Visium,Visium,brain,,normal,2,40210990,train
GSE229635,Spatial transcriptome of muscle sample from the main electric organ of electric eel,3,Electrophorus voltai,Visium,Visium,skeletal muscle,,normal,3,,train
GSE229699,"Bacterial TLR2/6 Ligands Block Ciliogenesis, Derepress Hedgehog Signaling, and Expand the Neocortex",5,Mus musculus,Visium,Visium,brain,pneumonia,normal;disease,5,37052506,train
GSE229823,Single-cell Multi-omics Analysis of Human Testicular Germ Cell Tumor Reveals its Molecular Features and Microenvironment II,3,Homo sapiens,Visium,Visium,testis,testicular germ cell tumor,disease,3,,train
GSE229877,Identification of spatially-resolved markers of malignant transformation in Intraductal Papillary Mucinous Neoplasms. [Visium],4,Homo sapiens,Visium,Visium,pancreas,mucinous neoplasm,disease,0,38553466,train
GSE230098,Orthotopic 4T1 tumors spatial transcriptomics,4,Mus musculus,Visium,Visium,other,neoplasm,disease,4,40670787,train
GSE230207,Spatial single cell analysis of tumor microenvironment remodeling pattern in primary central nervous system lymphoma,4,Homo sapiens,Visium,Visium,brain,primary central nervous system lymphoma,disease,4,37120690,train
GSE230282,Spatial transcriptomics of de novo NEPC and ARPC,1,Homo sapiens,Visium,Visium CytAssist,prostate,cancer,disease,1,37240308,train
GSE230424,Spatial transcriptome gene expression profile in 2 patients with Hashimoto's thyroiditis and 2 patients with papillary thyroid cancer combined with Hashimoto's thyroiditis.,4,Homo sapiens,Visium,Visium,thyroid,thyroid gland papillary carcinoma;Hashimoto thyroiditis,disease,4,39178310,train
GSE230776,Cell-Type Profiling of the Sympathetic Nervous System Using Spatial Transcriptomics and Spatial Mapping of mRNA [Slide-seq],1,Gallus gallus,Slide-seq,Slide-seq,other,,normal,0,36840366,train
GSE230778,Cell-Type Profiling of the Sympathetic Nervous System Using Spatial Transcriptomics and Spatial Mapping of mRNA [Spatial Transcriptomics],4,Gallus gallus,Visium,Visium,other,,normal,0,36840366,train
GSE231385,SDePER: a hybrid machine learning and regression method for cell-type deconvolution of spatial barcoding-based transcriptomic data,1,Homo sapiens,Visium,Visium,lung,,disease,1,39402626,train
GSE231496,A masked generative graph representation learning framework empowering precise spatial domain identification,1,Homo sapiens,Visium,Visium,heart,,normal,1,42178226,train
GSE231998,The use of ectopic volar fibroblasts to modify skin identity,1,Homo sapiens,Xenium,Xenium,skin,,perturbation,0,39236183,train
GSE232477,HIV-1 activates oxidative phosphorylation in infected CD4 T cells in a human tonsil explant model,1,Homo sapiens,Visium,Visium,tonsil,,normal,0,37325659,train
GSE232734,Synovial Th17 transdifferentiation into exTh17 sustains chronic IL-17-independent  inflammatory arthritis [Visium],2,Homo sapiens,Visium,Visium,other,rheumatoid arthritis,disease,2,41202149,train
GSE232766,Integration of single-nuclei RNA-sequencing and spatial transcriptomics defines the complex microenvironment of NF1-associated plexiform neurofibromas,4,Homo sapiens,Visium,Visium,other,plexiform neurofibroma;neurofibromatosis type 1,disease,4,37770931,train
GSE232910,Spatial Multimodal Analysis: MALDI-MSI and Spatial Transcriptomics within the same tissue section,19,Mus musculus;Homo sapiens,Visium,Visium,brain,Parkinson disease,disease,19,37667091,train
GSE233208,Single-nucleus RNA-Seq and spatial transcriptomics characterization of Alzheimer’s Disease and Down Syndrome,119,Mus musculus;Homo sapiens,Visium,Visium,brain,Alzheimer disease;Down syndrome;syndromic disease,disease;normal,0,39578645,train
GSE233223,spatial RNA-seq of SCG,1,Mus musculus,MERFISH/MERSCOPE,MERFISH,other,,normal,0,37471539,train
GSE233254,Spatial Transcriptomics of Intraductal Papillary Mucinous Neoplasms of The Pancreas Identifies NKX6-2 Expression as a Driver of Gastric Differentiation and Indolent Biological Potential,2,Mus musculus,Visium,Visium,pancreas,mucinous neoplasm,disease,2,37285225,test
GSE233293,Visium Spatial Transcriptomics expression profiles from IPMN samples of the pancreas,13,Homo sapiens,Visium,Visium,pancreas,pancreatic intraductal papillary-mucinous neoplasm;pancreatic ductal adenocarcinoma,disease,13,37285225,train
GSE233513,Single cell and spatial transcriptomics analysis of kidney double negative T lymphocytes in normal and ischemic mouse kidneys,4,Mus musculus,Visium,Visium,kidney,,normal;perturbation;disease,4,38017015,val
GSE233571,Shared and unique transcriptomic signatures of antidepressant and probiotics action in the mammalian brain,12,Rattus norvegicus,Visium,Visium,brain,,perturbation;normal,0,,train
GSE234035,Single cell analyses reveal the transient emergence of retinal progenitor cells in the ciliary margin zone during human retinal development [Spatial],16,Homo sapiens,Visium,Visium,eye,,normal,16,38670973,test
GSE234157,Intratumoral radiation dose heterogeneity augments antitumor immunity in mice and primes responses to checkpoint blockade,1,Mus musculus,Visium,Visium,unknown,neoplasm,disease,1,39292804,train
GSE234199,Lung injury shifts pulmonary capillary endothelial cells towards regeneration-associated Lrg1+ subpopulations with delayed dynamics in aged mice,8,Mus musculus,Visium,Visium,lung,,disease,8,40769983,val
GSE234253,Spatial transcriptomics of mouse spleens during malaria convalescence.,4,Mus musculus,Slide-seq,Slide-seqV2,spleen,malaria,disease,0,38944658,train
GSE234266,Pharmacological targeting Netrin-1 inhibits EMT in cancer [Visium],2,Mus musculus,Visium,Visium,skin,cancer,disease,2,37532929,train
GSE234271,Novel integrated multiomics analysis reveals Itgbl1-mediated regulation of fibrogenesis through antagonism of Tgfβ1 and IL1β signaling. (Spatial Gene Expression),3,Mus musculus,Visium,Visium,skin,,disease,3,39558136,train
GSE234713,IBD CosMx NanoString data from colonic mucosa,9,Homo sapiens,CosMx,CosMx,colon,ulcerative colitis;Crohn disease,normal;disease,0,37495570,train
GSE234774,The Tabulae Paralytica: Multimodal single-cell and spatial atlases of spinal cord injury,24,Mus musculus,Visium,Visium,spinal cord,spinal cord injury,disease,24,38898272;38907165,train
GSE234885,Sorafenib inhibits invasion of multicellular organoids that mimic Lymphangioleiomyomatosis nodules.,2,Homo sapiens,Visium,Visium,lung,lymphangioleiomyomatosis,disease,2,40776927,train
GSE235247,Aging- and Alcohol-Associated Spatial Transcriptomic Signature in Mouse Acute Pancreatitis,4,Mus musculus,Visium,Visium,pancreas,acute pancreatitis,disease,4,38940937,test
GSE235315,Integrative single-cell transcriptome analysis of human pancreatic cancer reveals an intermediate cancer cell population associated with poor prognosis [Spatial],7,Homo sapiens,Visium,Visium,pancreas,malignant pancreatic neoplasm,disease,7,38297291,train
GSE235583,Deciphering the spatio-temporal transcriptional and chromatin accessibility of human retinal organoid development at the single cell level [Spatial Transcriptomics],24,Homo sapiens,Visium,Visium,eye;other,,normal,24,,train
GSE235672,"Siglec-9 acts as an immune checkpoint molecule on macrophages in glioblastoma, restricting T cell priming and immunotherapy response [ST]",20,Homo sapiens,Visium,Visium,brain,glioblastoma,disease,20,37460871,train
GSE235743,Genetic vulnerability to healing reveals a spatially resolved epithelial restitution program,3,Mus musculus,Visium,Visium,colon,,normal;perturbation,3,37878672,train
GSE235896,Decoder-seq enhances mRNA capture efficiency in spatial RNA sequencing,22,Homo sapiens;Mus musculus,Other;Visium,Decoder-seq;Visium,kidney;brain,,disease;normal,17,,train
GSE236171,Spatiotemporal trajectory analysis and validation of microglia activation in traumatic brain injury,4,Mus musculus,Visium;ST (legacy),Visium;ST (legacy),brain,traumatic brain injury,normal;disease,4,38007580,val
GSE236424,Spatiotemporal hepatocyte heterogeneity impacts in vivo gene engineering [Visium Spatial Transcriptomics],23,Mus musculus,Visium,Visium,liver,,perturbation;normal,23,,train
GSE236660,Effect of Aging on the Human Myometrium at Single-Cell Resolution,8,Homo sapiens,Visium,Visium,uterus,,normal,8,38296945,train
GSE236681,Targeting Metabolic Adaptations in the Breast Cancer–Liver Metastatic Niche Using Dietary Approaches to Improve Endocrine Therapy Efficacy,4,Homo sapiens,Visium,Visium,liver,metastatic neoplasm;breast cancer,disease,4,35259269,train
GSE236698,Mucinous colorectal adenocarcinoma,2,Homo sapiens,Visium,Visium,colon,colorectal adenocarcinoma,disease;normal,2,38778448,test
GSE236890,Longitudinal spatial transcriptomics of murine T cell transfer colitis,4,Mus musculus,Visium,Visium,colon,colitis,disease,4,42097141,train
GSE236963,Spatial Transcriptomics of Meningeal Inflammation Reveals Variable Penetrance of Inflammatory Gene Signatures into Adjacent Brain Parenchyma,11,Mus musculus,Visium,Visium,brain,,normal;disease,11,39475792,train
GSE237086,Non-CG DNA methylation and MeCP2 stabilize repeated tuning of long genes that distinguish closely related neuron types [MERFISH],5,Mus musculus,MERFISH/MERSCOPE,MERSCOPE,brain,,perturbation;normal,0,,train
GSE237119,Red blood cells-heme-exposure and tumor-associated macrophage identity,2,Mus musculus,Visium,Visium,unknown,neoplasm,disease,2,38060331,train
GSE237183,Integrative spatial analysis reveals a multi-layered organization of glioblastoma,19,Homo sapiens,Visium,Visium,brain,glioblastoma;oligodendroglioma;astrocytoma (excluding glioblastoma);high grade astrocytic tumor,disease,19,38653236,test
GSE237308,Three-dimensional molecular architecture of mouse organogenesis,4,Mus musculus,Visium,Visium,embryo (whole),,normal,0,37524711,train
GSE237771,Epithelial-Immune Metabolic Codependency Fuels Inflammatory Disease [Spatial Transcriptomics],2,Homo sapiens,Visium,Visium,skin,inflammatory disease,disease,2,38772365,train
GSE238004,Nextflow Pipeline for Visium and H&E Data from Patient-Derived Xenograft Samples,4,Mus musculus,Visium,Visium,other,melanoma,disease,4,38626768,train
GSE238145,Batf3-dendritic cells and 4-1BB/4-1BB ligand axis are required at the effector phase within the tumor microenvironment for PD-1/PD-L1 blockade efficacy,10,Homo sapiens,Visium,Visium,bladder,urinary bladder carcinoma,disease,0,38656869,train
GSE238264,Spatial transcriptomics analysis of neoadjuvant cabozantinib and nivolumab in advanced hepatocellular carcinoma identifies independent mechanisms of resistance and recurrence,6,Homo sapiens,Visium,Visium,liver,hepatocellular carcinoma,disease,6,37723590,test
GSE240015,Age-related epithelial defects limit thymic function and regeneration [visium],2,Mus musculus,Visium,Visium,thymus,,normal,2,39112630,train
GSE240102,Spatial Co-transcriptomics Reveals Discrete Stages of the Arbuscular Mycorrhizal Symbiosis II,20,Medicago truncatula,Visium,Visium,plant,,perturbation;normal,18,,train;test
GSE240271,High-resolution spatial transcriptomics of hormone-induced ovulation in mice,8,Mus musculus,Slide-seq,Slide-seq,ovary,,normal;perturbation,0,37662215;40060619;41888598,train
GSE240715,Spatial transcriptomics map of the embryonic mouse brain: a tool to explore neurogenesis,4,Mus musculus,Visium,Visium,brain,,normal,0,37855382,train
GSE240843,Spatial transcriptomic data of a lymph node from an individual with Multicentric Castleman Disease,1,Homo sapiens,Stereo-seq,Stereo-seq,lymph node,idiopathic multicentric Castleman disease;multicentric Castleman disease,disease,0,38170173,train
GSE241124,Spatiotemporal Single-Cell Roadmap of Human Skin Wound Healing (Spatial),16,Homo sapiens,Visium,Visium,skin,,normal;disease,16,39366968;39468077;39729995,train
GSE241346,"A Proteomic Atlas of Atherosclerosis: The Contribution of Proteoglycans to Sex Differences, Plaque Phenotypes and Outcomes",1,Homo sapiens,Visium,Visium,blood vessel,atherosclerosis,disease,1,37646165,train
GSE242058,Spatial Transcriptomics Reveal Basal Sex Differences in Supraoptic Nucleus Gene Expression of Adult Rats Related to Cell Signaling and Ribosomal Pathways,8,Rattus norvegicus,Visium,Visium,brain,,normal,8,37858270,train
GSE242214,A molecular atlas of brain neurovascular interactions reveals a spatiotemporal requirement of TGFβ signaling in brain angiogenesis [Visium],6,Mus musculus,Visium,Visium,brain,,normal,6,42173924,val
GSE242249,Spatial transcriptomic profiles of prostate tissue obtained from a patient diagnosed with benign prostatic hyperplasia (BPH).,1,Homo sapiens,Visium,Visium,prostate,benign prostatic hyperplasia,disease,0,38654277,val
GSE242270,Spatiotemporal immune atlas of a clinical-grade gene-edited pig-to-human kidney xenotransplant,1,Sus scrofa,Visium,Visium,kidney,,normal,1,38605083,train
GSE242311,Spatial heterogeneity of integrins and their ligands in primary breast tumors,16,Homo sapiens,Visium,Visium,breast,breast cancer,disease,16,39456890;42539924,train
GSE242352,Resolving spatial subclonal genomic heterogeneity of loss of heterozygosity and extrachromosomal DNA in gliomas,17,Homo sapiens,Visium,Visium,brain,glioblastoma;oligodendroglioma;astrocytoma (excluding glioblastoma);glioma,disease,17,40514380,train
GSE242471,Probe-based spatial host-pathogen genes expression to study bacterial pathogenesis and the regulation of bacterial virulence factors in tissue.,4,Mus musculus,Visium,Visium,lung,infectious disease,disease;normal,4,39384974,train
GSE243022,Cancer-associated Fibroblast Spatial Heterogeneity and EMILIN1 Expression in Cancer Stroma Modulate TGF-b Activity and CD8+ T-Cell Infiltration in Breast Cancer,4,Homo sapiens,Visium,Visium,breast,breast cancer,disease,4,38505604,train
GSE243120,T cell mediated microglia activation triggers myelin pathology in a model of amyloidosis [MERFISH],5,Mus musculus,MERFISH/MERSCOPE,MERSCOPE,brain,amyloidosis;Alzheimer disease,disease,0,38937583,train
GSE243140,Spatial transcriptomics reveals modulation of transcriptional networks across  brain regions after auditory threat conditioning,16,Mus musculus,Visium,Visium,brain,,perturbation;normal,16,,train
GSE243168,"High resolution mapping of the tumor microenvironment using integrated single-cell, spatial and in situ analysis [Xenium]",1,Homo sapiens,Xenium,Xenium,breast,breast cancer,disease,1,38114474,test
GSE243179,Clonal proliferation of smooth muscle cell in human atherosclerosis,2,Homo sapiens,Visium,Visium,blood vessel,atherosclerosis,disease,2,37881937,train
GSE243225,Multi-species atlas resolves an axolotl limb development and regeneration paradox,1,Ambystoma mexicanum,Visium,Visium,other,,perturbation,1,37816738,train
GSE243275,"High resolution mapping of the tumor microenvironment using integrated single-cell, spatial and in situ analysis [scRNA-seq and Visium]",1,Homo sapiens,Visium,Visium CytAssist,breast,breast cancer,disease,1,38114474,train
GSE243280,"High resolution mapping of the tumor microenvironment using integrated single-cell, spatial and in situ analysis",2,Homo sapiens,Xenium,Xenium,breast,breast cancer,disease,2,38114474,train
GSE243291,Spatial transcriptomics reveal signatures of histopathological changes in muscular sarcoidosis,2,Homo sapiens,Visium,Visium,skeletal muscle,sarcoidosis,disease,2,38067175,train
GSE243367,Spatial transcriptomics reveals a low extent of transcriptionally active hepatitis B virus integration in patients with HBsAg loss,9,Homo sapiens,Visium,Visium,liver,hepatitis B virus infection,disease,9,37968095,train
GSE243981,Single-cell and spatial transcriptomics characterisation of the immunological landscape in the healthy and PSC human liver,3,Homo sapiens,Visium,Visium,liver,,normal,3,38199298,train
GSE244014,Spatial transcriptomics in embryonic mouse diaphragm muscle reveals regional gradients and subdomains of developmental gene expression,8,Mus musculus,Visium,Visium,skeletal muscle,,normal;perturbation,8,38883818,val
GSE244084,In situ spatial reconstruction of distinct normal and pathological cell populations within the human adrenal gland,4,Homo sapiens,Visium,Visium,adrenal gland,,normal,4,37953901,train
GSE244536,Deterministic reprogramming of neutrophils in tumors,4,Mus musculus,Visium,Visium,pancreas,pancreatic ductal adenocarcinoma,disease,3,38207030,test
GSE244641,Recirculating regulatory T cells mediate thymic regeneration [visium],6,Mus musculus,Visium,Visium,thymus,,normal,6,39892391,train
GSE244650,Targeting lysozyme 2 in endocardium promotes rapid recovery by modulating remote injury signals,13,Mus musculus,Visium,Visium,heart,,perturbation;normal,13,40967223,train
GSE244659,A diverse network of pericoerulear neurons control arousal states,2,Mus musculus,Other,Pixel-seq,brain,,normal,0,40335695,train
GSE244723,Spatial transcriptomics reveals expression of novel genes during the remodelling of the embryonic human heart,4,Homo sapiens,ST (legacy),ST (legacy),heart,,normal,4,38011284,train
GSE244803,Spatial transcriptomics of mouse spleens during steady state and malaria infection. [d0_d7_slideseqV2],8,Mus musculus,Slide-seq,Slide-seqV2,spleen,malaria,normal;disease,0,38848213,train
GSE245097,Spatial transcriptomics of the achilles tendon harvested from the injury site with and without TrkA neuronal inhibition,4,Mus musculus,Visium,Visium,other,,perturbation;disease,4,38117901,train
GSE245111,Spatial microniches of IL-2 synergize with IL-10 to drive lung migratory Th2 cells in response to inhaled allergen [Curio],4,Mus musculus,Slide-seq,Slide-seq,lymph node,,perturbation;disease,0,38374265,train
GSE245112,Spatial microniches of IL-2 synergize with IL-10 to drive lung migratory Th2 cells in response to inhaled allergen,4,Mus musculus,Visium,Visium,lymph node,,perturbation,4,38374265,train
GSE245263,Spatial transcriptomics of brains from tumor-bearing C57BL/6 mice,1,Mus musculus,Visium,Visium,brain,neoplasm,disease,1,,train
GSE245274,Spatially restricted immune and microbiota-driven adaptation of the gut [Spatial Transcriptomics],46,Mus musculus,Visium,Visium,small intestine;colon,,normal;perturbation;disease,46,39567686,val
GSE245313,Characterization of regeneration initiating cells during Xenopus laevis tail regeneration [spatial transcriptomics],3,Xenopus laevis,Visium,Visium,other,,perturbation,3,39350302,train
GSE245388,Spatial transcriptomics reveals unexpected histological heterogeneity in primary prostate,8,Homo sapiens,Visium,Visium,prostate,prostate cancer,disease,8,38569039,train
GSE245469,Multimodal spatiotemporal transcriptomic resolution of embryonic palate osteogenesis [Spatial Transcriptomics],4,Mus musculus,Visium,Visium,head and neck,,normal,4,37709732,train
GSE245582,Spatiotemporal profiling defines persistence and resistance dynamics during targeted treatment of BRAF-mutant melanoma,24,Mus musculus,Visium,Visium,other,melanoma,disease,24,39700408,test
GSE245620,Single-cell and spatial transcriptomics characterisation of the immunological landscape in the healthy and PSC human liver,4,Homo sapiens,Visium,Visium,liver,primary sclerosing cholangitis;liver disorder,disease,4,38199298,train
GSE245704,Spatial transcriptomic analysis of Gastric adenocarcinoma,1,Homo sapiens,Visium,Visium,stomach,gastric adenocarcinoma,disease,1,39021298,train
GSE245908,Identification of TREM1+CD163+ myeloid cells as a deleterious immune subset in HCC [Spatial Transcriptomics],2,Homo sapiens,Visium,Visium,liver,hepatocellular carcinoma,disease,2,38350444;41270217,train
GSE246495,Spatial transcriptomics in human mid luteal endometrial biopsies,8,Homo sapiens,Visium,Visium,uterus,,normal;not stated,8,40561039,train
GSE246518,Spatial transcriptomics sequencing profiles of human breast tissue,11,Homo sapiens,Visium,Visium,breast,,disease;normal,4,38216737,train
GSE246584,Ataxia-telangiectasia mutated (Atm) disruption sensitizes spatially-directed H3.3K27M/TP53 diffuse midline gliomas to radiation therapy,4,Mus musculus,Xenium,Xenium,brain,"glioma;nervous system disorder, non-human animal",disease,4,37904990,train
GSE246770,Profiling of murine tumors initiated by transplantation of engineered prostate organoids,8,Mus musculus,Visium,Visium,prostate;lymph node,neoplasm,disease,0,39394434,train
GSE247450,MERFISH reveals embryonic endothelial heterogeneity,3,Mus musculus,MERFISH/MERSCOPE,MERSCOPE,embryo (whole),,normal,0,38348657,train
GSE247834,Well-ST-seq: cost-effective and cellular level spatial transcriptomics with high RNA capture efficiency,10,Mus musculus,Other,Well-ST-seq,embryo (whole);spleen,,normal,0,,train
GSE248077,Perturbed liver gene zonation in a mouse model of non-alcoholic steatohepatitis,13,Mus musculus,Visium,Visium,liver,metabolic dysfunction-associated steatohepatitis,normal;disease,13,,train
GSE248082,Spatial deconvolution of tertiary lymphoid structure in human IPF lungs revealed novel CCL19-expressing mural cells,13,Homo sapiens,Visium,Visium,lung,idiopathic pulmonary fibrosis;pulmonary fibrosis;interstitial lung disease 2,disease;normal,13,39978854,train
GSE248205,Unraveling the molecular architecture of autoimmune thyroid diseases at spatial resolution,8,Homo sapiens,Visium,Visium,thyroid,Hashimoto thyroiditis;Graves disease,normal;disease,8,39003267,test
GSE248230,Generation of human neuromusculoskeletal tri-tissue organoids [Spatial Transcriptomics],1,Homo sapiens,Visium,Visium,other,,normal,1,,train
GSE248347,Spatial transcriptomics to dissect molecular signature of cardiac fibroblasts in experimental autoimmune myocarditis,2,Mus musculus,Visium,Visium,heart,autoimmune myocarditis,normal;disease,2,41341993,train
GSE248356,Spatial transcriptomics reveals the pharmacological effects on tumors and TME structural heterogeneity under MASK vaccine treatment,3,Mus musculus,Visium,Visium,other,melanoma,disease,3,40303352,train
GSE248517,Seeing the whole transcriptomics picture: Spatial gene expression analysis reveals photoreceptor stress as modulator of retinal vascular changes,8,Mus musculus,Visium,Visium,eye,,normal;perturbation,8,40251274,train
GSE248545,Spatial transcriptomics analysis of adult hippocampal neurogenesis in the human brain,4,Homo sapiens,Visium,Visium,brain,,normal,4,39414359,test
GSE248608,Spatial Multiomics Reveals Metabolic Reprogramming and Calcification Characteristics of Diabetic Macroangiopathy [Spatial Transcriptomics],6,Homo sapiens,Visium,Visium,blood vessel,diabetes mellitus;calcinosis,disease,6,39395983,train
GSE248646,Spatial Gene Expression in the Adult Rat Patellar Tendon,2,Rattus norvegicus,Visium,Visium,other,,normal,2,,train
GSE248953,Cellular Heterogeneity of Pluripotent Stem Cell Derived Cardiomyocyte Grafts is Mechanistically Linked to Treatable Arrhythmias,2,Homo sapiens,Visium,Visium,heart,cardiac rhythm disease;heart disorder,disease,2,,train
GSE249121,DNA methylation memory of acinar-ductal transition state altering Kras-downstream Pi3k and Rho GTPase signaling [spatial transcriptomics],20,Mus musculus,Visium,Visium,pancreas,,perturbation;normal,20,40156071,train
GSE249279,Systems-based identification of the Hippo pathway for promoting fibrotic mesenchymal differentiation in systemic sclerosis,4,Homo sapiens,Visium,Visium,skin,systemic sclerosis,disease,4,38172207;40164604;42124727,train
GSE249403,Spatial mapping of RNA turnover kinetics in the mouse brain [Spatial NT-seq],20,Mus musculus,Visium,Visium,brain,,normal;perturbation,20,42675226,val
GSE249729,Spatial transcriptomics data of HS lesional skin and healthy skin,3,Homo sapiens,Visium,Visium,skin,,disease;normal,3,38113104,train
GSE249803,Spatial transcriptomics reveals spatial remodling of hepatic lobule during liver regeneration,4,Mus musculus,Visium,Visium,liver,,normal;perturbation,4,41033443,train
GSE249965,Spatial transcriptomics of primary human hepatoblastomas,3,Homo sapiens,Visium,Visium,liver,hepatoblastoma,disease;normal,3,39567523,train
GSE250138,Immune profiling-based targeting of pathogenic T cells with ustekinumab in ANCA-associated glomerulonephritis,23,Homo sapiens,Visium,Visium,kidney,glomerulonephritis,disease;normal,23,39300109;40393992,train
GSE250163,Role of copper in progression of clear cell renal cell carcinoma [Spatial transcriptomics],5,Homo sapiens,Visium,Visium,kidney,clear cell renal carcinoma,disease,5,39476412,test
GSE250346,Image-based spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis [Xenium],45,Homo sapiens,Xenium,Xenium,lung,pulmonary fibrosis;idiopathic pulmonary fibrosis;sarcoidosis;interstitial lung disease,normal;disease,25,38168317;39901013;41390915,train
GSE250398,Histological Signatures Reveal Anti-Fibrotic Factors in Mouse and Human Lungs,8,Mus musculus,Visium,Visium,lung,,disease;normal,8,40108456,train
GSE250521,A Spatially Resolved Transcriptome Landscape during Thyroid Cancer Progression,16,Homo sapiens,Visium,Visium,thyroid,thyroid gland papillary carcinoma;thyroid gland undifferentiated (anaplastic) carcinoma,normal;disease,16,,train
GSE250636,Spatial transcriptomics analysis identifies a unique tumor-promoting function of the meningeal stroma in melanoma leptomeningeal disease.,9,Homo sapiens,Visium,Visium,spinal cord;bone;meninges;colon;other,neoplastic meningitis;melanoma,disease,9,38866016;39005315;39636739,train
GSE251693,Double-negative B cells and DNASE1L3 colocalise with microbiota in gut-associated lymphoid tissue,2,Homo sapiens,Visium,Visium,colon,,normal,2,38744839,train
GSE251926,Open-ST: High-resolution spatial transcriptomics in 3D,19,Homo sapiens,Other,Open-ST,lymph node,head and neck squamous cell carcinoma,disease,0,38917789,train
GSE251938,Single-cell and In Situ Spatial Transcriptomics of Marjolin ulcers,1,Homo sapiens,Xenium,Xenium,skin,ulcer disease;burn,disease,1,39128494,train
GSE251950,Spatial transcriptomics of gastric cancers (Visium 10X platform),10,Homo sapiens,Visium,Visium,stomach;unknown,gastric cancer,disease,10,39580151,train
GSE252090,Spatial single cell RNA profiles from medulloblastoma Group 3/4 tumors with oncogene aberrations,23,Homo sapiens,Molecular Cartography,Molecular Cartography,brain,medulloblastoma,disease,0,40335697,val
GSE252108,Dissecting the intra- and intertumoral heterogeneity of adrenocortical carcinoma by single-cell multi-omics analyses [I],2,Homo sapiens,Visium,Visium,adrenal gland,adrenal cortex carcinoma,disease,0,,train
GSE252113,Dissecting the intra- and intertumoral heterogeneity of adrenocortical carcinoma by single-cell multi-omics analyses,5,Homo sapiens,Visium,Visium,adrenal gland,adrenal cortex carcinoma,disease;normal,5,,train
GSE252176,Multi-Omics molecular subtyping based on commensal microbiome predicts molecular characteristics and therapeutic response in Triple-Negative Breast Cancer [Spatial Transcriptome seq],4,Homo sapiens,Visium,Visium,breast,triple-negative breast carcinoma,disease,4,38730464,val
GSE253080,Decoding Heterogeneous and Coordinated Tissue Architecture in Glioblastoma Using Spatial Transcriptomics,16,Homo sapiens,Visium,Visium,brain,glioblastoma,disease,16,38947514;40867324,test
GSE253199,Cell and Transcriptomic Diversity of Infrapatellar Fat Pad during Knee Osteoarthritis [Spatial Transcriptomics],12,Homo sapiens,Visium,Visium,adipose tissue,osteoarthritis,disease,12,39919907,train
GSE253378,A spatial transcriptomics based Label-free Method for Assessment of Human Stem Cell Distribution and Effects in a Mouse Model of Lung Fibrosis,5,Mus musculus;Homo sapiens,Visium,Visium,lung,,normal;disease,5,,train
GSE253428,Spatial transcriptomic sequencing of day 7 tumors in G422TN-GBM model,1,Mus musculus,Visium,Visium,brain,glioblastoma,disease,1,42474078,train
GSE253439,Nanostring CosMx 980-plex RNA profiling of human kidney biopsy and nephrectomy,4,Homo sapiens,CosMx,CosMx,kidney,minimal change disease;IgA glomerulonephritis;pyelonephritis,disease,0,40399382,train
GSE253474,In situ single-cell profiling sheds light on IFI27 localisation during SARS-CoV-2 infection,116,Homo sapiens,CosMx,CosMx,lung,COVID-19,disease,0,38377798,train
GSE253520,Mouse uterine gene expressions during peri-implantation period,3,Mus musculus,Visium,Visium,uterus,,normal,3,39377223;41803091,train
GSE253585,Deconvolution of regulatory T cell heterogeneity identifies cycling precursors as conductors of immune escape during breast carcinoma progression [Visium],20,Rattus norvegicus,Visium,Visium,breast,breast carcinoma;cancer;epithelial neoplasm;breast cancer,normal;disease,20,41997138,test
GSE253710,Respiratory infection with influenza A virus delays remyelination and alters oligodendrocyte metabolism.,12,Mus musculus,Visium,Visium,brain,infectious disease;disease of primarily extrinsic mechanism;influenza,normal;disease,12,39104416,train
GSE253850,Human and mouse adrenal glands are characterized by species-specific steroidogenic states and tissue turnover [Spatial Transcriptomics],4,Homo sapiens,Visium,Visium,adrenal gland,,normal,4,,train
GSE253852,Human and mouse adrenal glands are characterized by species-specific steroidogenic states and tissue turnover,2,Mus musculus,Visium HD,Visium HD,adrenal gland,,normal,2,,train
GSE253951,Conserved dorsal horn neuron subtype-specific enhancers are implicated in the genetic risk of chronic pain [Mouse Xenium],2,Mus musculus,Xenium,Xenium,spinal cord,,normal,2,39453813,train
GSE254056,Injury-Induced CLU-Positive Cardiomyocytes Drive Metabolic Reprogramming of Macrophage Function in Heart Regeneration [stero-seq],2,Mus musculus,Stereo-seq,Stereo-seq,heart,,perturbation,0,41205597,val
GSE254087,Postnatal Subventricular Zone Injury Predicts Motor Impairment in Preterm Infants Following Intestinal Disease,2,Mus musculus,Xenium,Xenium,brain,intestinal disorder;peritonitis,normal;disease,2,,train
GSE254164,Dynamic fibroblast-immune interactions shape recovery after brain injury,4,Mus musculus,Visium,Visium,brain,brain injury,disease,4,40903576,train
GSE254364,High-resolution analysis of mononuclear phagocytes reveals clinically relevant markers in human colo-rectal liver metastasis - Visium Spatial Transcriptomics,2,Homo sapiens,Visium,Visium,liver,metastatic malignant neoplasm in the liver,disease,2,36652202,test
GSE254652,Comparing 10x Visium spatial transcriptomic technologies,23,Mus musculus,Visium,Visium,spleen,malaria,disease,23,40156041;41278534,train
GSE254829,PanIN and CAF Transitions in Pancreatic Carcinogenesis Revealed with Spatial Data Integration,13,Homo sapiens,Visium,Visium,pancreas,pancreas disorder;intraepithelial neoplasia,disease,13,40569674,train
GSE254861,Spatial transcriptomics reveals C10 tumor transcriptomic changes generated by Smarta cell transfer,2,Mus musculus,Visium,Visium,other,neoplasm,disease,2,42313973,train
GSE255217,Spatial Transciptomics of human trephine BM samples from AML patients and healthy donors,4,Homo sapiens,Visium,Visium,bone marrow,acute myeloid leukemia,disease;normal,4,38582086,train
GSE255370,Characterization of cuprizone mouse model at single-cell and spatial transcriptomics level[Spatial Transcriptomics],28,Mus musculus,Visium,Visium,brain,,normal;disease,28,42626114,train
GSE255407,Single cell approaches define two mammalian oligodendrocyte precursor cell populations and their evolution over developmental time [Xenium In Situ Gene Expression],3,Mus musculus,Xenium,Xenium,brain,,normal,3,38579710,train
GSE255552,Spatial transcriptomic analysis of liver-innervating cholinergic neurons,2,Mus musculus,Visium,Visium,liver,,perturbation,2,39436946,train
GSE255892,Perinatal Brain Injury Triggers Niche-Specific Changes to Cellular Biogeography [MERFISH],5,Mus musculus,MERFISH/MERSCOPE,MERSCOPE,brain,brain injury,disease;normal,0,,train
GSE255942,The HIF-1α/PLOD2 axis integrates extracellular matrix organization and cell metabolism leading to aberrant musculoskeletal repair.,2,Mus musculus,Visium,Visium,skeletal muscle,burn,disease,2,38472175,train
GSE255953,Transcriptomic landscape of the anterior thalamic nuclei of the mouse [Xenium],7,Mus musculus,Xenium,Xenium,brain,,normal,0,38427564,train
GSE256234,Longitudinal spatial transcriptomics of murine IL10KO colitis,4,Mus musculus,Visium,Visium,colon,colitis;rectal prolapse,normal;disease,4,42097141,train
GSE256318,Nova-ST: Nano-Patterned Ultra-Dense platform for spatial transcriptomics [Nova-ST],7,Mus musculus,Other,Nova-ST,brain,,normal,0,39111312,test
GSE256319,Nova-ST: Nano-Patterned Ultra-Dense platform for spatial transcriptomics [Stereo-Seq],1,Mus musculus,Stereo-seq,Stereo-seq,brain,,normal,0,39111312,val
GSE256397,A spatiotemporal molecular atlas of mouse spinal cord injury identifies a distinct astrocyte subpopulation and therapeutic potential of IGFBP2,16,Mus musculus,Visium,Visium,spinal cord,spinal cord injury,normal;disease,16,39029468,train
GSE256505,Sex differences in Non-Alcoholic Steatohepatitis (NASH) in mice evoked by a fructose-palmitate-cholesterol (FPC)-enriched diet,2,Mus musculus,Visium,Visium,liver,metabolic dysfunction-associated steatohepatitis,disease,0,39911943,train
GSE258959,Spatiotemporal Landscape in Kidney of A Mouse Model of Hyperuricemia at Single-Cell Level [spatial transcriptomics data],4,Mus musculus,Visium,Visium,kidney,,disease;normal,4,39817712,train
GSE259363,Glycolysis in hepatic stellate cells coordinates fibrogenic extracellular vesicle release in a spatial manner to amplify liver fibrosis,4,Mus musculus,Visium,Visium,liver,,normal;disease,4,,train
GSE259405,"Repetitive transcranial magnetic stimulation induces cortical layer, brain region, and protocol dependent neural plasticity [Spatial transcriptomics]",12,Mus musculus,Visium,Visium,brain,,normal;perturbation,12,39772671,train
GSE260452,Single-cell multidimensional profiling of tumor cell heterogeneity in supratentorial ependymomas,55,Homo sapiens,Xenium,Xenium,brain,supratentorial ependymoma;ependymoma,disease,55,41813893,val
GSE260779,Spatial transcriptomic sequencing of repaired lung transplanted with human P63+ progenitor [STOmics-seq],1,Homo sapiens,Stereo-seq,Stereo-seq,lung,,perturbation,0,39900892,test
GSE260801,Spatially defined multicellular functional units in colorectal cancer revealed from single cell and spatial transcriptomics,10,Mus musculus,Slide-seq,Slide-seq,colon,colorectal cancer,disease;normal,0,40667258;41384492,test
GSE260847,Neuromodulatory co-expression in cardiac vagal motor neurons of the Dorsal Motor Nucleus of the Vagus [spatial transcriptomics],8,Rattus norvegicus,Visium,Visium,brain,,normal,8,39171288,train
GSE260926,scMultiome-seq and single-cell spatial HD data for the developing human knee,1,Homo sapiens,Visium HD,Visium HD,bone,,normal,1,41520766,train
GSE260998,Germinal Center Dark Zone harbors ATR-dependent determinants of T-cell exclusion that are also identified in aggressive lymphoma – Visium_FFPE_Spatial_Trasciptomics_project,2,Mus musculus,Visium,Visium,lymph node,,perturbation,2,38562878;40674145,train
GSE261085,Spatial transcriptome sequencing of the human corpus cavernosum with normal erectile function,1,Homo sapiens,BMK S1000,BMKMANU S1000/S3000,other,,normal,0,39299236,train
GSE261487,Spatial transcriptome sequencing of the rat corpus cavernosum with normal erectile function,1,Rattus norvegicus,BMK S1000,BMKMANU S1000,other,,normal,1,39299236,train
GSE261545,Histopathological-based analysis of human kidney spatial transcriptomics data: toward precision pathology,1,Homo sapiens,Visium,Visium,kidney,diabetic kidney disease;diabetes mellitus,disease,1,39097165,train
GSE261872,NAD+ prevents chronic kidney disease by activating renal tubular metabolism - spatial transcriptomics,4,Mus musculus,Visium,Visium,kidney,chronic kidney disease,disease,4,40059824,train
GSE261890,Cancer cell self-built physical barriers promote acquired resistance to immunotherapy [spatial],2,Mus musculus,BMK S1000,BMKMANU S1000/S3000,lung,non-small cell lung carcinoma,disease,0,,train
GSE261958,Multiomic analysis uncovers a continuous spectrum of differentiation and Wnt-MDK-driven immune evasion in hepatoblastoma [Spatial Transcriptomics],22,Homo sapiens,Visium,Visium;Visium CytAssist,liver,hepatoblastoma,disease,22,39900120,train
GSE262082,Molecular lineage and spatial distribution of subplate neurons in the human fetal cerebral cortex.,1,Homo sapiens,Visium,Visium,brain,,normal,1,39495628,train
GSE262083,Young and Aged Striatal Astrocyte MERFISH Panel,2,Mus musculus,MERFISH/MERSCOPE,MERFISH,brain,,normal,0,41006292,val
GSE262162,Treatment of cholangiocarcinoma using humanized monoclonal antibodies targeting Claudin-1 (CCA patient tissues),2,Homo sapiens,CosMx,CosMx,liver,cholangiocarcinoma,disease,2,42234772,test
GSE262245,NEST: Spatially-mapped cell-cell communication patterns using a deep learning-based attention mechanism,2,Homo sapiens,Visium,Visium,pancreas,pancreatic ductal adenocarcinoma,disease,2,40481363,train
GSE262276,Spatial transcriptomics of intraductal carcinoma of the prostate (IDCP),1,Homo sapiens,Visium,Visium,prostate,prostate carcinoma;adenocarcinoma,disease,1,38732035,train
GSE262322,Deep learning of enhancer codes highlights similarities between mammalian and avian telencephalon cell types [stereoseq],1,Gallus gallus,Stereo-seq,Stereo-seq,brain,,normal,0,39946451,train
GSE262430,Regional and Cell Specific Bioactivity of Injectable ECM Biomaterials in MI through Spatial and Single Nucleus Transcriptomics,9,Rattus norvegicus,Visium,Visium,heart,myocardial infarction,disease,9,41285846,val
GSE262569,Smooth muscle-derived resident vascular adventitial progenitor cell contribution to cardiac fibrosis and inflammation is dependent on KLF4 [Spatial Transcriptomics],2,Mus musculus,Visium,Visium,heart,,normal;perturbation,2,,train
GSE262998,Spatial Transcriptomics identifies Prosaposin (PSAP) as a Novel Therapeutic Vulnerability in Pulmonary Sarcoidosis,4,Homo sapiens,Visium,Visium,lung,pulmonary sarcoidosis,disease;normal,4,,train
GSE263034,Microglial mechanisms drive amyloid-β clearance in immunized patients with Alzheimer’s disease [dataset1],25,Homo sapiens,Visium,Visium,brain,Alzheimer disease;amyloidosis,disease;normal,25,40050704,train
GSE263079,Microglial mechanisms drive amyloid-β clearance in immunized patients with Alzheimer’s disease [dataset3],14,Homo sapiens,Visium,Visium,brain,Alzheimer disease;amyloidosis,disease,2,40050704,train
GSE263088,Spatial Transcriptomics identifies Prosaposin (PSAP) as a Novel Therapeutic Vulnerability in Pulmonary Sarcoidosis [Mouse_Spatial],4,Mus musculus,Visium,Visium,lung,sarcoidosis,normal;disease,4,,train
GSE263196,Spatial transcriptomic sequencing data of human small cell lung cancer,5,Homo sapiens,Visium,Visium,lung,small cell lung carcinoma,disease,5,,train
GSE263281,Spatial gene expression of canine veins during carotid-cartoid vein bypass implantation,8,Canis lupus familiaris,Visium,Visium,blood vessel,,normal;perturbation,8,38808504,train
GSE263333,"Spatial-Mux-seq: Multiplexed spatial mapping of chromatin features, transcriptome, and proteins at tissue scale",4,Mus musculus,Visium,Visium,embryo (whole);brain,,normal,0,39345645;39870864,train
GSE263450,Spatial transcriptomic mapping of the mouse brain in chronic stress,6,Mus musculus,Stereo-seq,Stereo-seq,brain,,perturbation;normal,0,40269152,test
GSE263498,Open-ST: High-resolution spatial transcriptomics in 3D [xenium],2,Homo sapiens,Xenium,Xenium,head and neck;lymph node,laryngeal squamous cell carcinoma;head and neck squamous cell carcinoma,disease,2,38917789,train
GSE263536,An Allele Agnostic Mutant KRAS Inhibitor Demonstrates Broad Spectrum Tumour Growth Inhibition in Pancreatic Ductal Adenocarcinoma,1,Mus musculus,Visium,Visium,pancreas,pancreatic ductal adenocarcinoma,disease,1,,train
GSE263591,Cardiac organoids for Hypertophic cardiomyopathy,1,Homo sapiens,CosMx,CosMx,heart,cardiomyopathy,disease,0,39594661,train
GSE263658,Spatial Transcriptomics in Bone Mechanomics: Exploring the Mechanoregulation of Fracture Healing in the Era of Spatial Omics.,2,Mus musculus,Visium,Visium,bone,,normal;perturbation,2,39742473,train
GSE263793,Microglia - astrocyte cross-talk in the amyloid plaque niche of an Alzheimer's disease mouse model as revealed by spatial transcriptomics,7,Mus musculus,Stereo-seq;CosMx,Stereo-seq;CosMx,brain,Alzheimer disease;amyloidosis,disease;normal,0,38819990,train
GSE263860,"Multi-omics sequencing reveals the signature of the genome, cell composition and transcriptome of nodal RDD [ST]",1,Homo sapiens,Visium,Visium,lymph node,,disease,1,,train
GSE263920,Analysis of Spatial Transcriptomics for Unveiling the novel molecular characteristics of Recurrent and Non-Recurrent High-Grade Serous Ovarian Cancer,8,Homo sapiens,Visium,Visium,ovary,ovarian cancer,disease,8,39135097,val
GSE264107,A Single-Cell Woodchuck Liver Atlas Identifies Healthy and Disease-related Cellular Programs Conserved in Human [spatial transcriptomics],2,Marmota monax,Visium,Visium,liver,,normal,0,,train
GSE264233,Exploring an essential biomarker in pulmonary fibrosis: an integrated and cross-disease approach with spatial transcriptomics and single-cell RNA sequencing,3,Homo sapiens,Visium,Visium,lung,pulmonary fibrosis,disease,3,40719154,val
GSE264331,Type 2 Diabetes Specific Spatial Differential Gene Expression in Pancreas Visium Data,14,Homo sapiens,Visium,Visium,pancreas,type 2 diabetes mellitus,disease;normal,14,40890166,train
GSE264334,Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomics [Xenium],1,Homo sapiens,Xenium,Xenium,kidney,kidney disorder,disease,1,38898271,train
GSE264398,Early human fetal lung atlas reveals the temporal dynamics of epithelial cell plasticity [Visium],2,Homo sapiens,Visium,Visium,lung,,normal,2,39003323,train
GSE264425,Early human fetal lung atlas reveals the temporal dynamics of epithelial cell plasticity [Xenium],2,Homo sapiens,Xenium,Xenium,lung,,normal,2,39003323,train
GSE264692,An integrated single-nucleus and spatial transcriptomics atlas reveals the molecular landscape of the human hippocampus [spatial-visium],10,Homo sapiens,Visium,Visium,brain,,normal,10,,train
GSE265828,Unravelling the molecular activation of the reparative cardiac fibroblasts after myocardial infarction,4,Mus musculus,Visium,Visium,heart,myocardial infarction,normal;disease,4,41526391,val
GSE266007,WUSCHEL-dependent cis-regulation in maize inflorescence development at single-cell resolution,7,Zea mays,Visium,Visium,plant,,normal,7,41039501,train
GSE266136,10X Visium Spatial transcriptomics of murine small intestine 6 and 14 days post Heligmosomoides polygyrus infection with or without LXR agonist GW3965,4,Mus musculus,Visium,Visium,small intestine,infectious disease,disease,4,,val
GSE266147,Macrophage-mediated myelin recycling fuels brain cancer malignancy (VISIUM),13,Mus musculus,Visium,Visium,brain,brain cancer,disease,0,39137777,train
GSE266244,Repurposing Large-Format Microarrays for Scalable Spatial Transcriptomics,12,Mus musculus;Homo sapiens,Other;Visium,Array-seq;Visium,brain;kidney;other;spleen,,normal,8,39562752,train
GSE266518,Transcriptional and functional architecture of the whole neutrophil compartment I,4,Mus musculus,Visium,Visium,lung,influenza;lung carcinoma,disease;normal,4,41339555,val
GSE266585,Deconstruction of cellular dynamics after treatment of volumetric muscle loss injury with extracellular matrix,14,Canis lupus familiaris,Visium,Visium,skeletal muscle,,normal;perturbation,14,41022770,train
GSE266604,Spatial transcriptome analysis for placental tissue of preeclampsia,2,Homo sapiens,Visium,Visium,placenta,preeclampsia,normal;disease,2,41604492,train
GSE266680,Architecture of the neutrophil compartment in mice,1,Homo sapiens,Visium HD,Visium HD,lung,,not stated,1,41339555,train
GSE266688,Single cell approaches define forebrain neural stem cell niches and identify microglial ligands that enhance precursor-mediated remyelination (MERFISH),4,Mus musculus,MERFISH/MERSCOPE,MERSCOPE,brain,,normal;disease,0,39823226,train
GSE266689,Single cell approached deine forebrain neural stem cell niches and identify microglial ligands that enhance precursor-mediated remyelination (Xenium),19,Mus musculus,Xenium,Xenium,brain,,normal;disease;perturbation,19,39823226;40780964,train
GSE266969,Spatial transcriptomics profile at single cell level of murine glioblastomas treated with and without anti-CSF-1R inhibitors.,13,Mus musculus,Xenium,Xenium,brain,brain glioblastoma,disease,13,39255775,train
GSE267315,Spatial transcriptomic characteristics of the aging human ovary,4,Homo sapiens,Stereo-seq,scStereo-seq,ovary,,normal,0,41243550,train
GSE267401,Spatial transcriptomics of colorectal cancer tissues,4,Homo sapiens,Visium,Visium,colon;unknown,colorectal cancer,disease,4,39499374,train
GSE267534,TLR4-dependent fibroblast-monocyte axis in tumor-draining lymph nodes contributes to metastasis in triple-negative breast cancer,3,Mus musculus,Visium,Visium,lymph node,triple-negative breast carcinoma,normal;disease,3,40957419,train
GSE267806,Single-cell multiomics profiling reveals heterogeneous transcriptional programs and microenvironment in Desmoplastic Small Round Cell Tumors [Visium: Spatial transcriptomics],6,Homo sapiens,Visium,Visium,unknown;other,desmoplastic small round cell tumor,disease,6,38781959;40088092,train
GSE267904,Mapping spatially resolved transcriptomes in human and mouse pulmonary fibrosis,24,Mus musculus,Visium,Visium,lung,pulmonary fibrosis,normal;disease,24,38951642;41501078,train
GSE267960,Spatial transcriptome profile of EGFR-TKI resistant non-small cell lung cancer,2,Homo sapiens,Visium,Visium,lung,non-small cell lung carcinoma;adenocarcinoma,disease,2,40843133,train
GSE268014,Spatial transcriptomic analysis of tumor heterogeneity in HPV+ and HPV- Head and Neck Squamous Cell Carcinoma,28,Homo sapiens,Visium;Visium HD,Visium;Visium HD,head and neck,head and neck squamous cell carcinoma,disease,28,42601456,train
GSE268015,Spatial transcriptome analysis of lung squamous cell carcinoma arising from interstitial pneumonia provides insights into tumor heterogeneity.,1,Homo sapiens,Visium,Visium,lung,squamous cell lung carcinoma;pneumonia,disease,1,39756106,train
GSE268018,Host-Pathogen Interactions in the Plasmodium-Infected Mouse Liver at Spatial and Single-Cell Resolution (Spatial Transcriptomics 2k),38,Mus musculus,ST (legacy),ST (legacy),liver,,disease;normal,0,39160174,train
GSE268049,The effect of exposure to neighborhood violence on GR signaling in lung tumors [Spatial Transcriptomics],15,Homo sapiens,Visium,Visium,lung,lung neoplasm,disease,15,38912926,train
GSE268068,Host-Pathogen Interactions in the Plasmodium-Infected Mouse Liver at Spatial and Single-Cell Resolution (VISIUM),4,Mus musculus,Visium,Visium,liver,,disease,4,39160174,train
GSE268312,Spatial transcriptomics analysis of a panel of PDX models of GBM,30,Homo sapiens;Mus musculus,Visium,Visium,brain,glioblastoma,disease;normal,30,40836081,train
GSE268427,snPATHO-seq: unlocking the FFPE archives for single nucleus RNA profiling [Visium],3,Homo sapiens,Visium,Visium,liver;breast,metastatic breast cancer in the liver;metastatic malignant neoplasm in the liver;breast cancer;triple-negative breast carcinoma,disease,3,39414943,test
GSE268492,Senescent-like microglia limit remyelination through the senescence associated secretory phenotype,2,Mus musculus,MERFISH/MERSCOPE,MERSCOPE,spinal cord,,disease,0,40055369,train
GSE268523,Single-nucleus and spatial transcriptomics of human ovary: Molecular insights into signaling pathways underlying primary ovarian insufficiency in classic galactosemia [Spatial transcriptomics],6,Homo sapiens,Visium,Visium,ovary,classic galactosemia;sarcoma,disease;normal,6,39440457,train
GSE268577,Spatial transcriptomics of 3 H3.3K27M pDMG samples,3,Homo sapiens,Visium,Visium,brain,glioma,disease,3,39373720,train
GSE268779,Identification of perturbation-responsive regions and genes in comparative spatial transcriptomics atlases,7,Mus musculus,Visium,Visium,spinal cord,spinal cord injury;autonomic dysreflexia,disease,7,,train
GSE268847,Implant renal injury-responsive cells to supplement erythropoietin and protect kidney [Spatial Transcriptomics],2,Mus musculus;Homo sapiens,Visium,Visium,kidney,,perturbation,2,41179707,train
GSE269043,Dissecting tissue-specific microenvironments in acute myeloid leukemia (Spatial),8,Mus musculus,Visium,Visium,lung,acute myeloid leukemia,normal;disease,8,,train
GSE269054,Spatially clustered type I interferon responses at injury borderzones,26,Mus musculus,Visium,Visium,heart,myocardial infarction,disease;perturbation,26,39198639,train
GSE269063,scRNA-Seq reveals anti-fibrotic mechanisms of TRPC6 inhibition [Spatial Transcriptomics],2,Mus musculus,Visium,Visium,kidney,ureteral obstruction,disease,2,,train
GSE269283,Meningeal-derived retinoic acid regulates neurogenesis via suppression of Notch and Sox2 [Spatial Transcriptomics],4,Mus musculus,Visium,Visium,brain,,normal;perturbation,4,40310723,train
GSE269332,Cell state dynamics during early stages of serous endometrial carcinoma,12,Mus musculus,Visium,Visium,uterus,endometrial carcinoma;carcinoma;endometrial cancer;uterine carcinoma,disease,12,40923619,train
GSE269354,Xenium In Situ Gene Expression of healthy and asthmatic lung endobronchial biopsies,2,Homo sapiens,Xenium,Xenium,airway,asthma,disease,0,40399607,train
GSE269377,Spatial characterization of the transcriptome of the adult healthy and mutant FUS mouse spinal cords [Spatial transcriptomics],4,Mus musculus,Visium,Visium,spinal cord,,normal,4,41430470,train
GSE269379,The CXCL16/CXCR6 axis is linked to immune effector cell-associated neurotoxicity in chimeric antigen receptor (CAR) T cell therapy,1,Homo sapiens,Visium HD,Visium HD,brain,toxic encephalopathy,disease,1,40588764,train
GSE269543,Multi-omics Analysis Revealing the Impact of Excessive Maternal Folate Supplementation on Offspring Brain Development [spatial transcriptome],4,Mus musculus,Visium,Visium,brain,,normal;perturbation,4,,train
GSE269545,Specific oncogenic drivers differently shaped the composition and functional diversity of immune cells in the microenvironment of experimental gliomas,4,Mus musculus,Visium,Visium,brain,glioma,normal;disease,4,,train
GSE269576,Gingival spatial analysis reveals geographic immunological variation in a microbiota-dependent and -independent manner [Spatial Transcriptomics],4,Mus musculus,Visium,Visium,oral cavity,,normal,4,39627243,train
GSE269617,The Maternal Gut-Immune Axis Programs the Neuroimmune Landscape of the Developing Brain,35,Mus musculus,MERFISH/MERSCOPE,MERSCOPE,brain,,normal;perturbation,0,,train
GSE269695,Patient-derived lymphomoids preserve the tumor architecture and allow testing response to therapies in lymphoma [Spatial Transcriptomics],5,Homo sapiens,Visium,Visium,lymph node;unknown;other,diffuse large B-cell lymphoma,disease,5,39653701,val
GSE269719,Multimodal spatial transcriptomic characterization of mouse kidney injury and repair [Xenium],12,Mus musculus,Xenium,Xenium,kidney,,perturbation;normal;disease,12,40813851,val
GSE269875,Spatial transcriptomics unveils novel potential disease mechanisms associated with the microenvironment in Multiple Myeloma,15,Mus musculus;Homo sapiens,Visium,Visium,bone marrow,"plasma cell myeloma;plasma cell myeloma, non-human animal",perturbation;disease;normal,15,41954292,train
GSE269906,Stereo-seq on human prefrontal cortex from six AD and six normal samples,12,Homo sapiens,Stereo-seq,Stereo-seq,brain,Alzheimer disease,disease;normal,0,39779708,train
GSE270389,Tau accumulation induces microglial state alterations in Alzheimer’s disease model mice,4,Mus musculus,Visium,Visium,brain,Alzheimer disease,disease,4,39592224,train
GSE270678,A spatially resolved atlas of gastric cancer characterises a lymphocyte aggregated region [Spatial Transcriptomics],72,Homo sapiens,Visium,Visium,stomach,gastric cancer,disease,72,41593079,train
GSE271011,Polyamine Dysregulation Contributes to Muscle Fibers Vulnerability in ALS,7,Mus musculus,Visium,Visium,skeletal muscle,amyotrophic lateral sclerosis,normal;disease,7,39932195;42602328,train
GSE271077,Spatial mapping reveals erythroid niches in mice during development and stress,14,Mus musculus,Visium,Visium,liver;bone marrow;spleen,,normal;perturbation,14,42393220,train
GSE271118,Single-cell transcriptomics revealed molecular vulnerability in a human midbrain-like organoid model of Parkinson's Disease [MERFISH],21,Homo sapiens,MERFISH/MERSCOPE,MERFISH,other;brain,Parkinson disease,normal;disease,0,,train
GSE271150,Spatial mapping reveals erythroid niches in human during development and stress,15,Homo sapiens,Visium,Visium,liver;bone marrow,myelodysplastic syndrome,normal;disease,15,42393220,train
GSE271370,Spatial transcriptomics unveils the in situ cellular and molecular hallmarks of the lung in fatal COVID-19,23,Homo sapiens,Visium,Visium,lung,lung disorder;COVID-19,disease;normal,23,,test
GSE271422,spatialGE is a User-Friendly Web Application that Facilitates Spatial Transcriptomics Data Analysis,3,Homo sapiens,Visium,Visium,brain,melanoma,disease,3,39636739,train
GSE271693,High resolution mapping of erythroid niches in mice using subcellular spatial transcriptomics,6,Mus musculus,Xenium,Xenium,liver;bone marrow;spleen,,normal;perturbation,6,42393220,train
GSE271725,A soil-grown wheat root atlas with validated cross-species cluster annotations allows to delineate conserved tissue specific marker genes [Spatial Transcriptomics],2,Triticum aestivum,Stereo-seq,Stereo-seq,plant,,normal,0,39893633,val
GSE271795,Lgr5 Marks Stem/Progenitor Cells Contributing to Epithelial and Muscle Development in the Mouse Esophagus,4,Mus musculus,Visium,Visium,esophagus,,normal,4,39164270,train
GSE271824,High resolution mapping of erythroid niches in human using subcellular spatial transcriptomics,3,Homo sapiens,Xenium,Xenium,liver;bone marrow,myelodysplastic syndrome,normal;disease,3,42393220,train
GSE271936,Immune and tumor cell landscape in pediatric high grade gliomas,3,Homo sapiens,Xenium,Xenium,brain,pediatric high-grade glioma;malignant glioma;ependymoma;childhood malignant neoplasm,disease,3,40315846,train
GSE272236,Pericytes orchestrate a tumor-restraining microenvironment in glioblastoma [Spatial Transcriptomics],8,Mus musculus,Visium,Visium,brain,brain neoplasm;glioblastoma,disease,8,41339360,train
GSE272303,Imaging spatial transcriptomics in a transgenic mouse model of α-synucleinopathy,8,Mus musculus,Xenium,Xenium,brain,synucleinopathy,normal;disease,8,41545426,test
GSE272334,The inflammatory micro-environment induced by targeted CNS radiotherapy is underpined by disruption of DNA methylation,16,Homo sapiens,Visium,Visium,brain,,perturbation;normal,16,40298030,train
GSE272337,Xenium spatial transcriptomics reveals C10 tumor transcriptomic changes induced by Smarta cell,2,Mus musculus,Xenium,Xenium,other,neoplasm,disease,2,42313973,train
GSE272421,Spatial transcriptomics stereo-seq was used to reveal the functional compartmentalization of Unicentric Castleman Disease.,1,Homo sapiens,Stereo-seq,Stereo-seq,lymph node,Castleman disease,disease,0,,val
GSE272564,Mid-Lobular Hepatocytes Exhibit Transient Proliferation Pause and Stress Response through Atf4-Ddit3 axis in Early Acute Liver Injury (10x Visium),4,Mus musculus,Visium,Visium,liver,,disease,4,,train
GSE272833,Spatial transcriptome analysis for squamous cell carcinoma arising from mature teratoma,4,Homo sapiens,Visium,Visium,ovary,squamous cell carcinoma;ovarian cancer;mature teratoma,disease,4,39948701,train
GSE272960,EWS-FLI1 Expression in Human Embryonic Mesenchymal Stem Cells Leads to Defective DNA Damage Repair and Ewing Sarcoma,2,Homo sapiens,Visium,Visium,lung;other,Ewing sarcoma,normal;disease,2,41136396,val
GSE273275,stRNA-seq of brain glioblastoma sample,2,Homo sapiens,Visium,Visium,brain,brain glioblastoma,disease,2,39933531,train
GSE273378,Vascular invasion-associated gene expression is detectable in pre-surgical biopsies of stage I lung adenocarcinoma [Spatial Transcriptomics],16,Homo sapiens,Visium,Visium,lung,lung adenocarcinoma,disease,16,41876493,train
GSE273432,The roles of glioma-associated macrophages/microglia in human GBM,4,Homo sapiens,Visium,Visium,brain,glioblastoma,disease,4,39921277,train
GSE273439,Extraction of a Stromal Metastatic Gene Signature in Breast Cancer via Spatial Profiling,4,Mus musculus,Visium,Visium,adipose tissue;lung,breast cancer,disease,4,40065328,train
GSE273489,Mapping the genetic landscape establishing a tumor immune microenvironment favorable for anti-PD-1 response in mice and humans (Visium).,4,Mus musculus,Visium,Visium,other,neoplasm,disease,4,40343794,train
GSE273530,Programmed cell death-1 receptor deficiency enhances CD30+ T regulatory cell function in Melanoma [Murine NanoString CosMx SMI],1,Mus musculus,CosMx,CosMx,other,melanoma,disease,0,40457060,train
GSE273557,Spatial transcriptomic analysis of human dorsoal root ganglia neurons [Xenium],4,Homo sapiens,Xenium,Xenium,peripheral nerve,,normal,0,39496796,train
GSE273606,In vivo armed macrophages curb liver metastasis through tumor reactive T cell rejuvenation (MERFISH),2,Mus musculus,MERFISH/MERSCOPE,MERSCOPE,liver,metastatic malignant neoplasm in the liver,disease,0,40216735,test
GSE273952,GABA promotes resistance to immunotherapy of patients with TLS-positive tumors [Spatial Transcriptomics],8,Homo sapiens,Visium,Visium,kidney,clear cell renal carcinoma,disease,8,,train
GSE273978,"CH6824025, potent and selective DDR1 inhibitor, reduces kidney fibrosis in UUO mice",8,Mus musculus,Visium,Visium,kidney,,normal;disease,8,39379147,train
GSE274042,Spatiotemporal liver dynamics shapes hepatocellular heterogeneity and impacts in vivo gene engineering [MERFISH],2,Mus musculus,MERFISH/MERSCOPE,MERSCOPE,liver,,normal,0,,train
GSE274051,Spatial transcriptomics of HIV-associated non-Hodgkin lymphomas by EBV status and cell of origin,10,Homo sapiens,Visium,Visium,unknown,Burkitt lymphoma;non-Hodgkin lymphoma;Epstein-Barr virus-associated lymphoproliferative disorder;diffuse large B-cell lymphoma;plasmablastic lymphoma;plasma cell neoplasm;B-cell non-Hodgkin lymphoma,disease,10,41279969,train
GSE274059,Hif2α–Lox mediated collagen remodelling is crucial for embryo invasion,6,Mus musculus,Visium,Visium,uterus,,perturbation,6,41803091,train
GSE274103,Spatial transcriptomics on treatment-naïve pancreatic ductal adenocarcinoma (PDAC) patients,5,Homo sapiens,Visium,Visium,pancreas,pancreatic ductal adenocarcinoma,disease,5,40154487,train
GSE274314,Primary Aldosteronism: Spatial Multiomics Mapping of Genotype-Dependent Heterogeneity and Tumor Expansion of Aldosterone-Producing Adenomas,14,Homo sapiens,Visium,Visium,adrenal gland,primary aldosteronism;adenoma;hyperaldosteronism,disease,14,37125608;39826326,train
GSE274447,In vivo Spatial Perturb-Seq in the mouse brain,1,Mus musculus,Stereo-seq,Stereo-seq,brain,,perturbation,0,41723140,train
GSE274489,IL-12/IL-23 blockade reveals patterns of asynchronous inflammation in pyoderma gangrenosum,4,Homo sapiens,Visium,Visium,skin,pyoderma gangrenosum,disease,4,39393505,train
GSE274497,Spatial transcriptomics of murine eyelid,1,Mus musculus,Visium,Visium,eye,,normal,1,39955307,train
GSE274509,Consequences of the perivascular niche remodeling for tumoricidal T-cell trafficking into metastasis of ovarian cancer [Spatial Transciptomics],4,Mus musculus,Visium,Visium,ovary,ovarian cancer,disease,4,39372930;41679728,train
GSE274557,Spatial mapping of transcriptomic and lineage plasticity in metastatic pancreatic cancer,57,Homo sapiens,Visium,Visium,pancreas;liver;peritoneum;lung;other,pancreatic ductal adenocarcinoma;metastatic malignant neoplasm in the liver;malignant pancreatic neoplasm,disease,57,40269162,train
GSE274572,Delineation of a thrombin receptor-stimulated vascular smooth muscle cell transition to a plaque-stabilising fibrous cap-associated state,4,Homo sapiens,Visium,Visium,blood vessel,,disease,4,,train
GSE274605,Molecular signatures of altered energy metabolism and circadian rhythm perturbations in a model of synucleinopathy,8,Mus musculus,Visium,Visium,brain,synucleinopathy;Parkinson disease,disease,8,41736854,train
GSE274617,Single cell transcriptomes of pancreatic pre-invasive lesions and cancer reveal acinar metaplastic cells’ heterogeneity [MERFISH],1,Mus musculus,MERFISH/MERSCOPE,MERSCOPE,pancreas,cancer,disease,0,41758082,train
GSE274623,Single-cell resolution spatial analysis of antigen-presenting cancer-associated fibroblast niches [Xenium PM],8,Homo sapiens,Xenium,Xenium,peritoneum,cancer,disease,8,,train
GSE274641,Spatially exploring RNA biology in archival formalin-fixed paraffin-embedded tissues,9,Mus musculus;Homo sapiens,DBiT-seq,DBiT-seq,embryo (whole);lymph node;brain,lymph node disorder;lymphoma;diffuse large B-cell lymphoma,normal;disease,0,39353436,train
GSE274657,Spatial transcriptomics for platinum-resistant high-grade serous ovarian carcinoma,4,Homo sapiens,Visium,Visium,ovary,ovarian carcinoma,disease,4,40883550,train
GSE274665,Differential Activity of MAPK signalling Defines Fibroblast Subtypes in Pancreatic Cancer (Spatial Transcriptomics),4,Homo sapiens,Visium,Visium,pancreas,pancreatic ductal adenocarcinoma,disease,4,39627211,train
GSE274673,Single-cell resolution spatial analysis of antigen-presenting cancer-associated fibroblast niches [Xenium PDAC],6,Homo sapiens,Xenium,Xenium,pancreas,pancreatic ductal adenocarcinoma,disease,6,,train
GSE274697,The Mechanism Study of Intermittent Fasting in Glioblastoma Suppression via Gut Microbiota-mediated m6A Modification,6,Mus musculus,Visium,Visium,brain,glioblastoma,disease,6,41559043,val
GSE274767,Spatial Transcriptomics of Lungs Infected with Coccidioides posadasii,2,Mus musculus,Visium,Visium,lung,infectious disease,disease,2,39611685,val
GSE274782,Spatially profiling the molecular effects of repetitive transcranial magnetic stimulation in aged rodent brains.,12,Mus musculus,Visium,Visium,brain,,perturbation;normal,12,40888470,train
GSE274970,Morphogenic accommodations for unidirectional airflow in the chicken lung,1,Gallus gallus,Stereo-seq,Stereo-seq,lung,,normal,0,,train
GSE275026,Plaque-induced transcriptional reprogramming of microglia towards lymphoid receptor expression protects against Alzheimer’s disease.,8,Mus musculus,MERFISH/MERSCOPE,MERSCOPE,brain,Alzheimer disease,normal;disease,0,41193812,val
GSE275125,Specific pre-plasma cell states and local proliferation at the dark zone – medulla interface characterize germinal center-derived plasma cell differentiation in lymph node (Figure 6),4,Mus musculus,Visium,Visium,lymph node,,normal,4,,train
GSE275131,Effects of inhibiting stearoyl-CoA desaturase (SCD) on the spatial transcriptome in a mouse model of Alzheimer's disease (AD),4,Mus musculus,Visium,Visium,brain,Alzheimer disease,normal;disease;perturbation,4,41539386,test
GSE275144,Creeping fat-derived mechanosensitive fibroblasts drive intestinal fibrosis in Crohn’s disease strictures [Visium],2,Homo sapiens,Visium,Visium,small intestine,Crohn disease,disease,2,40967215,train
GSE275201,Spatial Transcriptomics of Brains Infected with VEEV,2,Mus musculus,Visium,Visium,brain,infectious disease,normal;disease,2,39749347,val
GSE275252,The G Protein-Coupled Receptor ADGRG6 Maintains Mouse Growth Plate Homeostasis by Negatively Regulating IHH Signaling,1,Mus musculus,Visium,Visium,bone,,perturbation,1,39236220,train
GSE275405,Visium Spatial Transcriptomics of IPMN model mice with Kras;Gnas mutation,4,Mus musculus,Visium,Visium,pancreas,pancreatic intraductal papillary-mucinous neoplasm,disease,4,39277181,train
GSE275590,Novel cell-to-cell communications between macrophages and fibroblasts regulate obesity-induced adipose tissue fibrosis [spatial transcriptomics],2,Mus musculus,Visium,Visium,adipose tissue,obesity disorder,normal;disease,2,40063503,train
GSE275954,Microglia activation orchestrates CXCL10-mediated CD8+ T cell recruitment to promote aging-related white matter degeneration,9,Mus musculus,MERFISH/MERSCOPE,MERFISH,peripheral nerve,,perturbation;normal,0,40404995,train
GSE276083,Single cell spatial transcriptome and RNA-seq analysis in human lung tissues with mycobacterial infection: Single cell spatial transcriptome,7,Homo sapiens,CosMx,CosMx,lung,mycobacterial infectious disease,disease,0,,train
GSE276273,Mouse Skin Xenium In Situ Spatial Gene Expression,1,Mus musculus,Xenium,Xenium,skin,,disease,1,39672169,train
GSE276542,Spatial transcriptomics characterization of ecosystems in the immune tumor microenvironment of diffuse large B-cell lymphoma,9,Homo sapiens,Visium,Visium,lymph node;tonsil;unknown,diffuse large B-cell lymphoma;large B-cell lymphoma,disease,9,42010788,train
GSE276841,Distinct Myeloid Derived Suppressor Cell Populations in Human Glioblastoma,2,Homo sapiens,Visium,Visium,brain,glioblastoma,disease,2,39818911,train
GSE276866,High Resolution Spatial Mapping of Microbiome-Host Interactions via in situ Polyadenylation and Spatial RNA Sequencing,8,Mus musculus,Visium,Visium,small intestine;colon,,disease,0,41792309,test
GSE276934,Image-based spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis [Visium],1,Homo sapiens,Visium HD,Visium HD,lung,pulmonary fibrosis,disease,1,,train
GSE277032,An in vivo and in vitro spatiotemporal atlas of human fetal midbrain development,16,Homo sapiens,Visium,Visium,brain,,normal,16,41633979,test
GSE277106,10X Visium Spatial transcriptomics of small intestine from mice fed stearic acid-rich high fat diet (HFD),2,Mus musculus,Visium,Visium,small intestine,,normal;perturbation,2,41616823,train
GSE277116,Neoadjuvant immunotherapy promotes the formation of mature tertiary lymphoid structures in a remodeled pancreatic tumor microenvironment,27,Homo sapiens,Visium,Visium,lymph node;pancreas,pancreatic ductal adenocarcinoma,disease,27,40815230,test
GSE277196,"High Resolution Spatial Mapping of Microbiome-Host Interactions via in situ Polyadenylation and Spatial RNA Sequencing [Ileum, without in situ Polyadenylation]",1,Mus musculus,Stereo-seq,Stereo-seq,small intestine,,disease,0,41792309,val
GSE277197,"High Resolution Spatial Mapping of Microbiome-Host Interactions via in situ Polyadenylation and Spatial RNA Sequencing [Ileum, with in situ Polyadenylation]",1,Mus musculus,Stereo-seq,Stereo-seq,small intestine,,disease,0,41792309,train
GSE277246,Spatial transcriptomics revealed that S1pr2 deletion in keratinocytes increases the MyD88/NF-kB pathway and psoriasis-related cytokine expression in the epidermis,2,Mus musculus,Visium,Visium,skin,psoriasis,disease,2,39391307,train
GSE277255,High Resolution Spatial Mapping of Microbiome-Host Interactions via in situ Polyadenylation and Spatial RNA Sequencing [STOmics],1,Mus musculus,Stereo-seq,Stereo-seq,small intestine,,disease,0,,val
GSE277387,Single-Cell and Spatial Multi-omics Reveal Interferon Signaling in the Pathogenesis of Perianal Fistulizing Crohn’s Disease,6,Homo sapiens,Visium,Visium,other,Crohn disease,disease,5,40608410,train
GSE277441,Utilizing combined spatial transcriptomics to elucidate localized immune responses within human coronary arteries throughout the progression of atherosclerosis [CosMx],3,Homo sapiens,CosMx,CosMx,blood vessel,atherosclerosis,disease,0,,train
GSE277463,Impaired parvalbumin interneurons in the retrosplenial cortex as the cause of sex-dependent vulnerability in Alzheimer’s disease [Xenium],6,Mus musculus,Xenium,Xenium,brain,Alzheimer disease,normal;disease,0,40305608;42161970,train
GSE277577,Gpnmb⁺ Microglia Represent a Distinct Subtype Reacting to Neuronal Loss induced by Prion Disease,7,Mus musculus,Visium,Visium,brain,prion disease,normal;disease,7,42120390,train
GSE277936,Enhanced Spatial Transcriptomics Analysis of Mouse Lung Tissues Revealed Cell-Specific Gene Expression Changes Associated with Pulmonary Hypertension,4,Mus musculus,Xenium,Xenium,lung,pulmonary hypertension,normal;disease,4,,train
GSE278133,Defective ventral neurogenesis due to midfetal Chd8 mutation drives autistic-like behavior in mice,1,Mus musculus,CosMx,CosMx,brain,,perturbation,0,42203765,test
GSE278169,Multi-omic analysis reveals retinoic acid molecular drivers for fibrosis and regenerative repair in skin fibrosis [Spatial transcriptomics],5,Mus musculus,Visium,Visium,skin,,normal;disease,5,40816279,train
GSE278415,Drugless Extracellular Hydrogels Enable the Reprogramming of Malignant Glioblastoma,4,Mus musculus,Visium,Visium,brain,brain neoplasm;glioblastoma,disease,4,,train
GSE278431,In situ targeted gene expression analysis of healing skin on SD0 post-wounding in Wildtype and Rnasel knock out wounds,6,Mus musculus,Xenium,Xenium,skin,,perturbation,6,39903537,train
GSE278603,Digital reconstruction of spatiotemporal atlas unveils the cellular origins and signaling networks underlying early mouse organogenesis,6,Mus musculus,Stereo-seq,Stereo-seq,embryo (whole),,normal,0,,train
GSE278611,Clearance of p21-highly-expressing senescent cells accelerates wound healing,1,Mus musculus,Xenium,Xenium,skin,,perturbation,1,39537987,val
GSE278614,Single-Cell Spatial Mapping of Human Kidney Development Reveals Cellular Niches and Lineage Dynamics [CosMx],3,Homo sapiens,CosMx,CosMx,kidney,,normal,0,42533102,test
GSE278621,Spatial transcriptome profile of liver tissue from a patient with metabolic dysfunction-associated steatotic liver disease,1,Homo sapiens,Visium,Visium,liver,metabolic dysfunction-associated steatotic liver disease,disease,1,42329773,train
GSE278662,Visium spatial transcriptomics and proteomics identifies novel hepatic cell populations and transcriptomic signatures of alcohol-associated hepatitis,4,Homo sapiens,Visium,Visium CytAssist,liver,hepatitis,normal;disease,4,39592394,train
GSE278694,Integrated Single-Cell and Spatial Transcriptomics Uncover Distinct Cellular Subtypes Involved in Neural Invasion in PDAC,21,Homo sapiens,Visium,Visium,pancreas,pancreatic ductal adenocarcinoma,disease,21,40680743,train
GSE278766,Comparison of CosMx and GeoMx profiling performed on the same human kidney tissues [CosMx],1,Homo sapiens,CosMx,CosMx,kidney,kidney neoplasm,disease,0,40311874,train
GSE278848,Visium Spatial Transcriptomics of the Human Hypothalamus,9,Homo sapiens,Visium,Visium,brain,,normal,0,39910307,test
GSE278936,Single cell and spatial transcriptomics highlight the interaction of club-like cells with immunosuppressive myeloid cells in prostate cancer,52,Homo sapiens,Visium,Visium,prostate;liver;meninges;lymph node;heart,benign prostatic hyperplasia;prostate cancer;metastatic prostate carcinoma;metastatic malignant neoplasm in the liver,disease,52,39550375,train
GSE278969,Distinct cellular and spatial niches within the inflamed synovium of childhood arthritis [xenium],8,Homo sapiens,Xenium,Xenium,other,arthritic joint disease,disease,0,40601776,train
GSE279181,Cell type mapping reveals tissue niches and interactions in subcortical multiple sclerosis lesions [spatial transcriptomics],18,Homo sapiens,Visium,Visium,brain,multiple sclerosis,normal;disease,18,39501036,train
GSE279255,Tissue-resident memory CD8 T Cell Diversity is Spatiotemporally Imprinted,1,Mus musculus,Visium HD,Visium HD,small intestine,infectious disease,disease,1,39843748,train
GSE279273,Spatially Resolved Transcriptomic Signatures of Hippocampal Subregions and Arc-Expressing Ensembles in Active Place Avoidance Memory [Spatial Transcriptomics],2,Mus musculus,Visium,Visium,brain,,perturbation,2,38260257,train
GSE279405,Spatial transcriptomical analysis of livers from patients with COVID19,3,Homo sapiens,Visium,Visium,liver,COVID-19,disease,3,39709771,train
GSE279507,Mapping the Evolution of Acinar cell derived Pancreatic Preneoplastic Lesions in a Mouse Model: A Detailed Transcriptomic and Pathological Characterization,5,Mus musculus,Visium,Visium,pancreas,preneoplastic lesion,disease,5,,train
GSE279576,Integrative Spatial Multi-Omics Reveal Niche-Specific Inflammatory Signaling and Differentiation Hierarchies in Acute Myeloid Leukemia,6,Homo sapiens,Visium,Visium,bone marrow;skin;lymph node,acute myeloid leukemia;lymph node disorder,disease,6,41536977,train
GSE279676,Single cell deletion of the transcription factors Sox9 and Trps1 reveals novel functions in adult cortical astrocytes [Spatial transcriptomics],4,Mus musculus,Visium,Visium,brain,,perturbation,4,39610085,test
GSE280088,Reprogramming of epidermal keratinocytes by PITX1 transforms the cutaneous cellular landscape and promotes wound healing.,4,Mus musculus,Xenium,Xenium,skin;head and neck,,normal;disease,0,39480496,train
GSE280177,Molecular Cartography of the Human and Mouse Down Syndrome Brain [MERFISH],12,Mus musculus,MERFISH/MERSCOPE,MERSCOPE,brain,Down syndrome;syndromic disease,normal;disease,0,41027953,test
GSE280313,Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using high definition spatial profiling [VisiumV2],3,Homo sapiens,Visium,Visium,colon,malignant colon neoplasm,disease;normal,3,40473992,train
GSE280314,Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using high definition spatial profiling [Xenium],3,Homo sapiens,Xenium,Xenium,colon,malignant colon neoplasm,disease,3,40473992,test
GSE280315,Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using high definition spatial profiling [VisiumHD],5,Homo sapiens,Visium HD,Visium HD,colon,malignant colon neoplasm,disease;normal,5,40473992,test
GSE280316,Spatially-resolved molecular sex differences at single cell resolution in the adult human hypothalamus,10,Homo sapiens,Visium,Visium,brain,,normal,10,,test
GSE280376,Spatiotemporal dynamics of the cardioimmune niche during lesion repair [spatial],8,Mus musculus,Xenium,Xenium,heart,,perturbation;normal;disease,5,41184578,train
GSE280460,Spatially-resolved molecular sex differences at single cell resolution in the adult human hypothalamus [Xenium],13,Homo sapiens,Xenium,Xenium,brain,,normal,13,,train
GSE280515,Spatially-restricted and ontogenically-distinct hepatic macrophages are required for tissue repair.,3,Mus musculus,Visium,Visium,liver,,normal;perturbation,3,39862865,train
GSE280570,A temporal cortex cell atlas highlights gene expression dynamics during human brain maturation [Spatial Transcriptomics],4,Homo sapiens,Visium,Visium,brain,,normal,4,39567748,train
GSE280634,Xenium Spatial Transcriptomics with human breast cell typing panel in human treatment naïve primary PDAC,8,Homo sapiens,Xenium,Xenium,pancreas,pancreatic ductal adenocarcinoma,disease,0,39535921,val
GSE280709,Spatial component of: CELSR3 deficiency leads to tic-related behaviors and dopaminergic alterations in the striatum,4,Mus musculus,Visium,Visium CytAssist;Visium,brain,,normal;perturbation,3,40155412,train
GSE280737,Functional Integration of Autologous Tissue-Engineered Grafts in a Pre-Clinical Esophageal Defect Model,11,Sus scrofa,Visium,Visium,esophagus,,perturbation;normal,11,,train
GSE280741,Upregulation of the MBM CTC Signature and CTC:B Cell Clusters Associate with Secondary Liver Metastasis: a Melanoma Brain-Liver Metastasis Axis [Xenium],6,Mus musculus,Xenium,Xenium,brain;liver;small intestine,melanoma;metastatic malignant neoplasm;metastatic malignant neoplasm in the liver,disease;normal;not stated,6,39831781,train
GSE280895,Tissue-resident memory CD8 T Cell Diversity is Spatiotemporally Imprinted,17,Mus musculus;Homo sapiens,Xenium;MERFISH/MERSCOPE,Xenium;MERFISH,small intestine,infectious disease,disease;normal,0,39843748,test
GSE280982,Single-cell sequencing across radiation treatment timepoints in head and neck cancer,2,Homo sapiens,Visium,Visium,oral cavity,lip and oral cavity carcinoma;malignant tumor of neck,disease,2,40593620,train
GSE280990,Spatial Analysis of a Complete DIPG-Infiltrated Brainstem Reveals Novel Ligand-Receptor Mediators of Tumor-to-TME Crosstalk,10,Homo sapiens,Visium,Visium,brain;spinal cord,diffuse intrinsic pontine glioma,disease,10,39972389,train
GSE281086,Hair Follicle Epithelial Stem Cells Contributing to Interfollicular Epidermis during Homeostasis,4,Mus musculus,Visium,Visium,skin,,perturbation,4,40627455,train
GSE281265,A specific gene expression program underlies antigen archiving by lymphatic endothelial cells in mammalian lymph nodes [Xenium],12,Mus musculus,Xenium,Xenium,lymph node,,perturbation,12,40998762,val
GSE281288,NFE2-driven neutrophil polarization promotes pancreatic cancer liver metastasis progression,2,Homo sapiens,Visium,Visium,pancreas;liver,malignant pancreatic neoplasm;metastatic malignant neoplasm;metastatic malignant neoplasm in the liver,disease,2,39827463,train
GSE281317,single-cell multiomics data for the developing human pelvic girdle [spatial],28,Homo sapiens,Visium,Visium,bone,,normal,28,40866708,test
GSE281488,In situ single-cell profiling of a brain metastasis from a HER2+ Breast Cancer Patient and 8 primary tumors from TNBC patients.,9,Homo sapiens,CosMx,CosMx,brain;breast,breast cancer;triple-negative breast carcinoma,disease,0,41923644,train
GSE281489,In situ single-cell profiling of lung metastases from the MMTV-PyMT mouse model of metastatic breast cancer,1,Mus musculus,CosMx,CosMx,lung,breast cancer,disease,0,41923644,train
GSE281759,Multi-region spatial transcriptome analysis reveals cellular networks and pathways associated with hepatocellular carcinoma recurrence after surgical resection,17,Homo sapiens,Visium,Visium,liver,hepatocellular carcinoma,disease,17,41950768,val
GSE281796,A blueprint for local and distal glioblastoma invasion programs,2,Homo sapiens,Visium,Visium,brain,glioblastoma,disease,2,41844611,test
GSE281978,Deciphering head and neck cancer microenvironment: Single‐cell and spatial transcriptomics reveals human papillomavirus‐associated differences,6,Homo sapiens,Visium,Visium,head and neck,malignant tumor of neck;head and neck squamous cell carcinoma,disease,6,38235919,train
GSE282002,Cell competition drives bronchiolization and pulmonary fibrosis,5,Mus musculus,Visium,Visium,lung,pulmonary fibrosis,disease,5,39639058,val
GSE282057,GPNMB as a viable CAR Target for MITF pathognomonic fusion-driven cancers: A first-in-person GCAR1 Trial,4,Homo sapiens;Mus musculus,Visium HD,Visium HD,skeletal muscle;lung,,disease,4,,train
GSE282059,"Nanostring CosMx 6,000-plex RNA profiling of human kidney nephrectomy specimens",1,Homo sapiens,CosMx,CosMx,kidney,ureteral obstruction,disease,0,40399382,train
GSE282123,"Single-cell spatial transcriptomics of formalin-fixed, paraffin-embedded biopsies reveals colitis-associated cell networks [Xenium]",7,Homo sapiens,Xenium,Xenium,colon,ulcerative colitis;colitis,disease,7,42262875,val
GSE282124,"Single-cell spatial transcriptomics of formalin-fixed, paraffin-embedded biopsies reveals colitis-associated cell networks [Merscope]",1,Homo sapiens,MERFISH/MERSCOPE,MERSCOPE,colon,ulcerative colitis,disease,0,42262875,train
GSE282203,Spatial transcriptomics identifies regional disruptions in brain rhythmic gene expression in a mouse model of Alzheimer’s disease,65,Mus musculus,Visium,Visium,brain,Alzheimer disease,disease;normal,65,41659563,train
GSE282302,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Spatial Transcriptomics],105,Homo sapiens,Visium,Visium,pancreas,pancreatic ductal adenocarcinoma,disease,105,41533516,train
GSE282547,Spatial transcriptomic analysis of developing hearts at embryonic and neonatal stages,17,Mus musculus,Visium;Slide-seq,Visium;Slide-seq,heart,,normal;perturbation,8,42141139,train
GSE282635,Atf3 controls transitioning in female mitochondrial cardiomyopathy as identified by single-cell transcriptomics [Spatial Transcriptomics],1,Homo sapiens,Visium,Visium,heart,cardiomyopathy,disease,1,40184463,train
GSE282639,Ectopic expression of MUC5B in the respiratory bronchiole initiates ER stress in the IPF lung,43,Homo sapiens,CosMx,CosMx,lung,idiopathic pulmonary fibrosis,normal;disease,0,41091081,train
GSE282714,SPARROW reveals microenvironment zone-specific cell states in healthy and diseased tissues.,6,Homo sapiens,MERFISH/MERSCOPE,MERSCOPE,tonsil;lymph node,,normal,0,40112778,train
GSE282721,FOXA1 loss drives basal/squamous de-differentiation of prostate cancer and induces an immunosuppressive tumor microenvironment,1,Homo sapiens,CosMx,CosMx,prostate,prostate cancer,disease,0,41904157,train
GSE282726,FOXA1 loss drives basal/squamous de-differentiation of prostate cancer and induces an immunosuppressive tumor microenvironment,4,Mus musculus,Visium,Visium,prostate,prostate cancer,disease,4,41904157,train
GSE282867,Fronto-insular circuit mechanisms of accelerated intermittent theta burst stimulation,5,Mus musculus,Slide-seq,Slide-seq,brain,,perturbation,0,42102818,train
GSE282928,Microglial mechanisms drive amyloid-β clearance in immunized patients with Alzheimer’s disease,3,Homo sapiens,Visium HD,Visium HD,brain,Alzheimer disease;amyloidosis,disease,0,40050704,train
GSE283022,Type I Interferon Induced Apoptosis Drives Chronic Wounds in ISG15 deficiency,4,Homo sapiens,Visium,Visium,skin,,normal;disease,4,41743834,train
GSE283052,Spatial transcriptomics of 12 tumor tissues from colorectal cancer,12,Homo sapiens,Visium,Visium,colon,colorectal carcinoma,disease,12,41537001,train
GSE283145,Multi-Omic Single-Cell Dissection of Leukemic T-Cell Lymphoma Following CAR T-Cell Therapy [Spatial Transcriptomics],3,Homo sapiens,Visium,Visium,skin;bone,T-cell non-Hodgkin lymphoma;non-Hodgkin lymphoma,disease,3,,train
GSE283159,SPTEdU-seq: Parallel optics-free newborn cell tracking and spatial total transcriptomics decipher spatiotemporal dynamics across tissues and species,12,Mus musculus,Slide-seq,Slide-seqV2;Slide-seq,brain;embryo (whole);kidney,neoplasm,normal;perturbation;disease,0,41895283,train
GSE283227,CDK12/13 inactivation triggers STING-mediated antitumor immunity in preclinical models,4,Homo sapiens,Visium HD,Visium HD,bladder;lymph node,prostate adenocarcinoma,disease,4,40955658,train
GSE283269,Spatial Gene Expression of Human Coronary Arteries Revealed the Molecular Features of Diffuse Intimal Thickening in Explanted Hearts,6,Homo sapiens,Visium,Visium,blood vessel,,normal;disease,6,40076574,test
GSE283283,Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection,168,Mus musculus,Visium;Stereo-seq,Visium;Stereo-seq,brain;kidney;lung;spleen;heart;liver,cerebral malaria,normal;disease,153,,test
GSE283302,Spatial Transcriptomic Profiling of the Mouse Adrenal Gland and Adjacent Adipose Tissue,1,Mus musculus,Visium,Visium,adrenal gland,,normal,1,41442035,train
GSE283333,Comprehensive immune profiling reveals IFN-γ signaling in T cells mediates parasite phagocytosis in a rodent malaria model : Spatial transcriptomics data,2,Mus musculus,BMK S1000,BMKMANU S1000,lung,malaria,normal;disease,2,,train
GSE283411,Clonal lineage tracing and transcriptomics of cortical progenitor populations reveal maintenance of differentiation potential.,2,Mus musculus,Slide-seq,Curio Seeker,brain,,normal,0,39952245,train
GSE283412,Integrated Methylation and Spatial Transcriptomic Profiling of Metaplastic Breast Cancer to Investigate Intra-tumoral Heterogeneity.,8,Homo sapiens,Visium,Visium,breast,breast cancer,disease,8,40790295,train
GSE283418,Spatial molecular profiling of amygdalar neurons enables precision pharmacology against pain unpleasantness,10,Mus musculus,Molecular Cartography,Molecular Cartography,brain,,normal,0,,train
GSE283435,Gain-of-function ENL YEATS domain mutations impede nephrogenesis through gene expression control,2,Mus musculus,Visium HD,Visium HD,kidney,,perturbation,2,40087269,train
GSE283497,Genetically Engineered Brain Organoids Recapitulate Spatial and Developmental States of Glioblastoma Progression [Xenium Spatial Transcriptomics],6,Homo sapiens,Xenium,Xenium,brain,high grade astrocytic tumor;glioblastoma,normal;disease,6,39836549,train
GSE283832,"A cycling, progenitor-like cell population at the root of atypical teratoid rhabdoid tumor subtype differentiation trajectories [Xenium Spatial_Transcriptomics]",7,Homo sapiens,Xenium,Xenium,brain,"atypical teratoid rhabdoid tumor, SHH-activated;atypical teratoid rhabdoid tumor, TYR-activated;atypical teratoid rhabdoid tumor, MYC-activated",disease,0,40726147,train
GSE283863,Cranial radiotherapy profoundly affects glia without inducing widespread cellular senescence,1,Mus musculus,CosMx,CosMx,brain,,perturbation,0,40518745,train
GSE283872,Prior High Fiber Intake Impinges on the Cellular Responses of Mesenteric Adipose and Intestinal Tissues to Subsequent High Fat Feeding [Spatial Transcriptomics],4,Mus musculus,Stereo-seq,Stereo-seq,small intestine,,perturbation,0,41520334,test
GSE283883,Spatial Transcriptomics Sequencing of Mouse Liver at 2µm Resolution Using a Novel Spatial DNA Chip,1,Mus musculus,Other,"other (named in GEO, not in list)",liver,,normal,0,,train
GSE283945,Spatially Resolved Insights Into Fistulating Crohn’s Disease Pathogenesis - Visium Spatial Transcriptomics,35,Homo sapiens,Visium,Visium,colon;small intestine;rectum;other,Crohn disease;inflammatory bowel disease;intestinal disorder;diverticulitis of colon,disease;normal,35,41224999,test
GSE283959,Spatially resolved chimeric analysis reveals extracellular CKB-mediated ATP uptake at the glioma-astrocyte invasive front,4,Mus musculus,Visium,Visium,brain,glioblastoma;glioma,disease,4,40991701,train
GSE283967,Multi-modal refinement of the human heart atlas during the first gestational trimester,3,Homo sapiens,Visium,Visium,heart,,normal,3,39927812,train
GSE284005,A single-cell resolution spatial transcriptomics atlas of human multiple sclerosis lesion (MERSCOPE),17,Homo sapiens,MERFISH/MERSCOPE,MERFISH,brain,multiple sclerosis,disease;normal,0,,train
GSE284032,Integration and annotation of spatial multi-omic data with DIRAC highlights spatial organization of lymphoid organs,2,Mus musculus,Stereo-seq,Stereo-seq,thymus;spleen,,normal,0,,test
GSE284052,A spatiotemporal atlas of giant-cell formation during Meloidogyne incognita infection in tomato roots,3,Solanum lycopersicum,BMK S1000,BMKMANU S1000/S3000,plant,infectious disease,disease,0,42581385,train
GSE284089,Spatial multi-modal atlas of bone tissue from human femur,1,Homo sapiens,Visium,Visium,bone,,normal,1,39817519,train
GSE284137,Tissue and cellular spatiotemporal dynamics in colon aging,395,Mus musculus,ST (legacy),ST (legacy),colon,,normal,0,41125832,train
GSE284353,Comprehensive sequencing of the lung neuroimmune landscape in response to asthmatic induction,4,Mus musculus,Xenium,Xenium,lung;head and neck,asthma,disease,4,40181989,train
GSE284571,Cellular cartography reveals mouse prostate organization and determinants of castration resistance [Spatial Transcriptomics],8,Mus musculus,Visium,Visium,prostate,,normal;perturbation,8,39763898;40974890,train
GSE284625,spatial transcriptomics of mouse brain before and after activation,32,Mus musculus,Visium,Visium,brain,,normal;perturbation;not stated,32,42000729,train
GSE284695,Obesity-mediated intratumoral innervation increases pancreatic cancer tumorigenesis [Spatial Transcriptomics],8,Mus musculus,Visium,Visium,pancreas,malignant pancreatic neoplasm;overnutrition;obesity disorder,disease,8,,train
GSE284741,The XCL1-XCR1 axis supports intestinal tissue residency and anti-tumor immunity,1,Mus musculus,Xenium,Xenium,small intestine,infectious disease,disease,0,39841133,train
GSE284747,Inflammatory immune modulators of AML lung infiltration and respiratory failure,8,Mus musculus,Xenium,Xenium,lung,acute myeloid leukemia;lung disorder,normal;disease,8,,train
GSE284989,Spatial genomics reveals cholesterol metabolism as a key factor in immunotherapy resistance in colorectal cancer [Visium],22,Mus musculus,Visium,Visium,other,colorectal carcinoma,disease,22,40171265,train
GSE285027,Growth of the maternal intestine during pregnancy and lactation [Xenium],12,Mus musculus,Xenium,Xenium,small intestine,,normal,12,40112802,train
GSE285158,Charting the transition from in vitro production through in vivo diversification of human glial progenitor cells,6,Homo sapiens,Xenium,Xenium,brain,,perturbation;normal,6,42026046,train
GSE285226,Deciphering Spatial Transcriptomic Signatures Reveals Insights into Perifascicular Atrophy in Dermatomyositis,2,Homo sapiens,Visium,Visium,skeletal muscle,adult dermatomyositis;juvenile dermatomyositis,disease,2,,test
GSE285246,Spatially resolved atlas of IPF fibroblastic foci identifies that PAK2 kinase activation is involved in fibrogenesis,9,Homo sapiens,Visium,Visium,lung,idiopathic pulmonary fibrosis,disease,9,40675771,test
GSE285304,Spatially resolved m6A profiling using m6A-ARTR-DBiT [spatial],6,Mus musculus,DBiT-seq,m6A-ARTR-DBiT;DBiT-seq,embryo (whole);brain,,normal;perturbation,0,42265211,train
GSE285341,DDX54 downregulation enhances anti-PD1 therapy in immune-desert lung tumors with high tumor mutational burden,4,Mus musculus,Xenium,Xenium,other,lung neoplasm;cancer,disease,4,40172969,train
GSE285505,Fibroblast-Derived Thrombospondin 2 Shapes the Immune-Exclusionary Environment at Invasive Fronts in Colorectal Cancer [Visium,4,Homo sapiens,Visium,Visium,colon,colorectal carcinoma,disease,4,41276505,val
GSE285715,Unveiling Immune Metabolic Mechanisms in Bladder Cancer: Spatial Profiling Identifies ZFP36 as a Therapeutic Target,6,Homo sapiens,Visium,Visium,bladder,cancer,disease;normal,6,,val
GSE285858,Distinct Molecular Patterns in R6/2 HD Mouse Brain: Insights from Spatiotemporal Transcriptomics [Spatial Transcriptomics],16,Mus musculus,Visium,Visium,brain,Huntington disease,normal;disease,16,40482637;41456279,train
GSE285984,Multi-omic characterization of human sural nerves across polyneuropathies [Xenium],8,Homo sapiens,Xenium,Xenium,peripheral nerve,"chronic inflammatory demyelinating polyradiculoneuropathy;polyneuropathy, inflammatory demyelinating, chronic;polyneuropathy",disease;normal,8,40849297,val
GSE285990,Chemotherapy triggers immune evasion by fostering LEPR+ Kupffer cell differentiation in liver metastases [RNA-seq],2,Mus musculus,Stereo-seq,Stereo-seq,liver,metastatic malignant neoplasm in the liver,disease,0,41687606,train
GSE286008,Spatial transcriptomics reveals the immunomodulatory activities of an oncolytic adenovirus armed with a type I interferon in a replication-permissive immunocompetent pancreatic cancer model,4,Mesocricetus auratus,Visium,Visium,pancreas,malignant pancreatic neoplasm,disease,4,,train
GSE286051,Multi-omic and spatial analysis of mouse kidneys highlights sex-specific differences in gene regulation across the lifespan,4,Mus musculus,Xenium,Xenium,kidney,,normal,4,,train
GSE286085,Fibroblast orchestration of inflammaging via NF-kB activation (Xenium Analysis),1,Mus musculus,Xenium,Xenium,lung,,perturbation,1,41256682,train
GSE286184,Single-nucleus transcriptomic landscape of human glomerular diseases [Xenium],20,Homo sapiens,Xenium,Xenium,kidney,diabetic kidney disease,normal;disease,0,,test
GSE286215,A temporal map of B cell diversification mechanisms in mice,2,Mus musculus,Stereo-seq,Stereo-seq,spleen,infectious disease,disease,0,42297974,test
GSE286227,Spatial transcriptomic profiling of the lung tissues from a patient with recurrent anti-synthetase syndrome associated interstitial lung disease after bilateral lung transplantation and one untreated patient,2,Homo sapiens,Visium HD,Visium HD,lung,interstitial lung disease;syndromic disease,disease,2,,train
GSE286250,Decoding transcriptional identity during Neuron-Astroglia Cell Fate driven by RAR-specific agonists [Spatial transcriptomics],4,Mus musculus,ST (legacy),ST (legacy),brain,,perturbation,0,41255712,train
GSE286254,A Single-Cell Atlas Of Human Pediatric Liver Reveals Age-Related Hepatic Gene Signatures,7,Homo sapiens,Xenium,Xenium,liver,hamartoma,normal;disease,7,,train
GSE286413,Spatial multi-omics defines a shared glioblastoma infiltrative signature at the resection margin [10x Spatial],2,Homo sapiens,Visium,Visium,brain,brain neoplasm;glioblastoma,disease,2,40759029,val
GSE286452,Spatiotemporal dynamics of the lymph adaptive immune repertoire in response to viral infection,6,Mus musculus,Slide-seq,Slide-seq,lymph node,vaccinia,normal;disease,0,39975238,train
GSE286477,Dendritic Cell Immunotherapy with Homologous Antigenic Loading as Adjuvant Treatment for Glioblastoma: Phase I Trial Analysis [Spatial Transcriptome],6,Homo sapiens,Visium,Visium,brain,brain neoplasm;glioblastoma,disease,6,,train
GSE286935,Analysis of B cell neighborhoods via single cell spatial transcriptomics in head and neck cancer patients,1,Homo sapiens,CosMx,CosMx,head and neck,head and neck squamous cell carcinoma;malignant tumor of neck,disease,0,39970232,train
GSE286964,Somatic mutations distinguish melanocyte subpopulations in human skin,2,Homo sapiens,Xenium,Xenium,skin,,normal,2,,train
GSE287202,Spatial Transcriptomics Uncovers Brain Region-Specific Transcriptional Changes Associated with Development and Aging,4,Mus musculus,Visium,Visium,brain,,normal,4,40563967,test
GSE287278,A spatial transcriptomics dataset of the endometrium from repeated implantation failure patients,8,Homo sapiens,Visium,Visium,uterus,,normal;disease,8,41162434,train
GSE287384,Gas6-Axl signaling drives oral regenerative wound repair,4,Mus musculus,Visium,Visium,skin;oral cavity,,normal;perturbation,4,40601775,train
GSE287459,Modulation of infiltrating CD206-positive macrophages restricts progression of pulmonary lymphangioleiomyomatosis (LAM),8,Homo sapiens,Visium,Visium,lung,lymphangioleiomyomatosis,disease,8,,test
GSE287472,LUAD spatial transcriptomics,1,Homo sapiens,CosMx,CosMx,lung,lung adenocarcinoma,disease,0,42358378,train
GSE287499,Spatial transcriptomics of Slc16a1-Col2a1CreERT2 mouse spinal motion segments reveals compartment-distinct differences in the intervertebral disc,2,Mus musculus,Visium HD,Visium HD,other,,normal;perturbation,2,42236482,train
GSE287979,Systematic inference of super-resolution cell spatial profiles from histology images,1,Homo sapiens,Visium,Visium,stomach,,disease,1,39984438,train
GSE288178,Spatially resolving chromatin landscapes in formalin-fixed paraffin-embedded tissues,1,Homo sapiens,DBiT-seq,Patho-DBiT,lymph node,diffuse large B-cell lymphoma,disease,0,42067542,train
GSE288200,A rewired myeloid niche in spleen establishes stress erythropoiesis,1,Mus musculus,Visium,Visium,spleen,,perturbation,1,,train
GSE288235,"Clonal cell states link gastroesophageal junction tissues, metaplasia, and cancer [Spatial transcriptomics]",3,Homo sapiens,Other,seqFISH,esophagus,Barrett esophagus,disease,0,36747708;41360789,test
GSE288365,Molecular Drivers of Neuroinflammation in Amyotrophic Lateral Sclerosis,18,Homo sapiens,Visium,Visium,spinal cord,amyotrophic lateral sclerosis;lateral sclerosis;hereditary motor neuron disease,disease,0,42135512,train
GSE288483,Spatial transcriptomics for high-grade serous ovarian carcinoma who were treated with Olaparib maintenance therapy,8,Homo sapiens,Visium,Visium,peritoneum;other;ovary,ovarian carcinoma,disease,8,41219363,train
GSE288576,Effect of Pdk4 smooth muscle cell-specific knockout on atherosclerosis,1,Mus musculus,Slide-seq,Slide-seq,blood vessel,atherosclerosis,disease,0,,train
GSE288607,Spatial transcriptomics of cellular niches in pulmonary granuloma of chronic sarcoidosis patients,9,Homo sapiens,Visium,Visium,lung,pulmonary sarcoidosis,disease,9,,val
GSE288663,Role of progesterone receptor in inguinal hernia formation via skeletal muscle fibrosis [Hernia_Xenium],6,Mus musculus,Xenium,Xenium,skeletal muscle,,normal;perturbation,6,40504614,val
GSE288758,Spatial dynamics of the tumor microenvironment associated with emerging resistance to targeted therapy in EGFR-mutated non–small cell lung cancer,2,Homo sapiens,Visium HD,Visium HD,lung,non-small cell lung carcinoma,disease,2,41152910,train
GSE288888,"Spatial Transcriptomics, Histopathology, and Magnetic Resonance Subfield Segmentation of Hippocampal Sclerosis Compared to Normal Hippocampus: A Proof-of-Concept Study",2,Homo sapiens,Visium,Visium,brain,temporal lobe epilepsy,normal;disease,2,,train
GSE289001,Spatial single cell transcriptomic analysis of a lineage-traceable mouse model of DICER1 Syndrome informs tumor developmental hierarchy [Xenium],71,Mus musculus,Xenium,Xenium,kidney,DICER1-related tumor predisposition;neoplasm;kidney neoplasm;mesenchymal cell neoplasm;sarcoma;neoplastic disease or syndrome,perturbation;disease;normal,0,41912509,train
GSE289052,Overactivation of SHH signaling during embryonic choroid plexus development induces a cascade of dedifferentiation and carcinoma formation.,6,Mus musculus,Visium,Visium,brain,carcinoma,disease,6,42629571,train
GSE289054,Flexible Nanoelectronics Show Reduction of Arrhythmogenesis in Transplanted Human Cardiomyocytes,16,Homo sapiens,Slide-seq,Slide-seqV2,heart,,perturbation,0,41100583,train
GSE289170,"Multi-omics analysis identifies erythroid cells as the major population in mouse placentas expressing the MHC class II antigen presentation, chemokine, and antibacterial immune response genes [Spatial Transcriptomics]",6,Mus musculus,Visium,Visium,placenta,,normal,6,41058694,test
GSE289263,The mechanotransducer Piezo1 coordinates metabolism and inflammation to promote skin regeneration.,8,Mus musculus,Xenium,Xenium,skin,,perturbation,8,40715139,train
GSE289299,Syrah: a pipeline to maximize spatial transcriptomics data output,1,Schmidtea mediterranea,Slide-seq,Slide-seqV2,other,,normal,0,42081452,train
GSE289363,Intratumoral spatiotemporal heterogeneity of HPV status in HPV-associated oropharyngeal squamous cell carcinoma with clinical record,3,Homo sapiens,Visium,Visium,tonsil,oropharynx squamous cell carcinoma,disease,3,41943047,train
GSE289496,Granzyme K CD8⁺ T cells with tissue-resident features promote intestinal inflammation in patients with Crohn’s disease,1,Homo sapiens,Visium,Visium,small intestine,Crohn disease,disease,1,42409960,train
GSE289717,Vesicles Secreted by Renal Cell Carcinoma Cells Cause Vascular Endothelial Cells to Express PSMA and Drive Tumor Progression,1,Homo sapiens,Visium HD,Visium HD,kidney,,disease,1,39936957,train
GSE289745,Cancer-induced nerve injury promotes resistance to anti-PD-1 therapy [Spatial Transcriptomics],11,Homo sapiens,Visium,Visium,skin,skin squamous cell carcinoma,disease,11,40836096,train
GSE289934,Glioma-neuronal circuit remodeling induces regional immunosuppression [visium],2,Mus musculus,Visium,Visium,brain,glioma,disease,2,40404658,train
GSE290041,single-cell spatial analysis reveals molecular mechanisms underlying immune cell organization and cancer cell heterogeneity in HPV-associated oropharyngeal carcinoma [xenium],11,Homo sapiens,Xenium,Xenium,head and neck,oropharyngeal carcinoma,disease,11,42288489,train
GSE290094,Spatial Transcriptomic Profiling of the Type 2 Diabetic Coronary Microcirculation Reveals Heterogeneity Varied by Regions of the Heart [Visium],7,Mus musculus,Visium,Visium,heart,diabetes mellitus,disease,7,41203872,train
GSE290287,Spatial Zonation of Pro- and Anti-inflammatory Tumor Macrophages After Anti-CD40,1,Mus musculus,Visium HD,Visium HD,other,neoplasm,disease,1,41176316,test
GSE290324,Ontogeny-independent expression of LPCAT2 in granuloma macrophages during experimental visceral leishmaniasis [Spatial Transcriptomics],7,Mus musculus,Visium,Visium,liver,visceral leishmaniasis,disease;normal,7,41862629,train
GSE290338,Spatial Zonation of Pro- and Anti-inflammatory Tumor Macrophages After Anti-CD40 II,2,Mus musculus,Visium HD,Visium HD,other,neoplasm,disease,2,41176316,train
GSE290577,Dynamic responses to rejection in the transplanted human heart revealed through spatial transcriptomics,2,Homo sapiens,Xenium,Xenium,heart,,not stated,2,,train
GSE290670,Spatial Transcriptome Profiling Reveals Molecular Features of  Invasive Lobular Carcinoma in Breast Cancer.,8,Homo sapiens,Visium,Visium,breast,invasive lobular breast carcinoma,disease,8,,train
GSE290724,Neurodevelopmental hijacking of oligodendrocyte lineage programs drives glioblastoma infiltration [Spatial transcriptomics],2,Homo sapiens,Visium HD,Visium HD,brain,glioblastoma,disease,0,40381621,val
GSE290762,Salmonella typhimurium targets distal colonocytes to trigger infection [Spatial Transcriptomics],4,Mus musculus,BMK S1000,BMKMANU S1000,colon,infectious disease,normal;disease,4,41277366,train
GSE290924,Integrative spatially-resolved multi-omics analysis reveals metabolic evolution of the transition to invasive breast cancer,6,Homo sapiens,Other,DynaSpatial,breast,invasive breast carcinoma,disease,6,,train
GSE291088,CytoSignal Detects Locations and Dynamics of Ligand-Receptor Signaling at Cellular Resolution from Spatial Transcriptomic Data,1,Mus musculus,Visium HD,Visium HD,embryo (whole),,normal,1,,train
GSE291200,Topological velocity inference from spatial transcriptomic data,1,Homo sapiens,Slide-seq,Slide-seq,embryo (whole),,normal,0,40670711,train
GSE291210,Spatial transcriptomics profile of mammary gland tumours in MMTV-PyMT mouse model of breast cancer [MERFISH],3,Mus musculus,MERFISH/MERSCOPE,MERSCOPE,breast,breast cancer,disease,0,41781391,train
GSE291246,Induced B Cell Receptor Diversity Predicts PD-1 Blockade Immunotherapy Response,17,Homo sapiens,Xenium,Xenium,unknown;lymph node,neoplasm,disease,17,40314973,train
GSE291308,"Site-specific phosphorylation of ERα determines sex-dependent metabolic, reproductive, and body compositional phenotypes in mice",1,Mus musculus,CosMx,CosMx,uterus,,perturbation,0,41438071,train
GSE291378,Xenium-based spatial transcriptomics of brains following chronic plastic exposure,3,Mus musculus,Xenium,Xenium,brain,,normal;perturbation,3,,train
GSE291385,Hepatic hematopoiesis hijacked by tumor metastasis promotes immunosuppression,1,Mus musculus,Stereo-seq,Stereo-seq,liver,metastatic malignant neoplasm in the liver,disease,0,,train
GSE291460,Ontogeny of the spinal cord dorsal horn [Xenium],8,Mus musculus,Xenium,Xenium,spinal cord,,normal;perturbation,8,41505538,train
GSE291687,KRAS G12C inhibition combined with CD47 and immune checkpoint blockage overcomes intrinsic resistance to concomitant KRAS G12C and immune checkpoint inhibitor therapy,2,Mus musculus,Visium HD,Visium HD,lung,lung neoplasm,disease,2,40885190,train
GSE291688,Xenium data for a comparison of spatial transcriptomics technologies for medulloblastoma cryosections,4,Homo sapiens,Xenium,Xenium,brain,,disease,4,40542418,val
GSE291813,Spatial crosstalk modeling of the tumor microenvironment uncovers CCR5-mediated glia-to-glia signaling as a key regulator of brain metastases,8,Mus musculus,Visium,Visium,brain,breast cancer,disease,8,40960488,train
GSE292123,Spatial transcriptomics analysis of urticarial rash skin from patients with Schnitzler syndrome,10,Homo sapiens,Xenium,Xenium,skin,Schnitzler syndrome,disease,10,40393905,train
GSE292156,High-Resolution Spatial Map of the Human Facial Sebaceous Gland Reveals Marker Genes and Decodes Sebocyte Differentiation,3,Homo sapiens,Stereo-seq,Stereo-seq,skin,,normal,0,40449655,train
GSE292268,Spatial single-cell transcriptomics of MASLD-affected liver biopsy samples.,2,Homo sapiens,CosMx,CosMx,liver,metabolic dysfunction-associated steatotic liver disease,disease,0,40262132,train
GSE292299,Conserved principles of spatial biology define tumor heterogeneity and immunotherapy sensitivity,18,Homo sapiens,Visium,Visium,brain;lymph node;lung;head and neck;airway,non-small cell lung carcinoma;diffuse large B-cell lymphoma,disease,18,,train
GSE292394,High-Resolution Spatial Map of the Human Facial Sebaceous Gland Reveals Marker Genes and Decodes Sebocyte Differentiation [MERFISH],1,Homo sapiens,MERFISH/MERSCOPE,MERSCOPE,skin,,normal,0,40449655,test
GSE292706,TMPRSS11B promotes an acidified microenvironment and immune suppression in squamous lung cancer,1,Mus musculus,Visium,Visium,lung,squamous cell lung carcinoma;lung adenocarcinoma,disease,1,41214366,train
GSE292791,Cosmx Spatial Analysis of whole brain slices and ventral pallidum,1,Mus musculus,CosMx,CosMx,brain,,normal,0,40240618,train
GSE292956,Spatial  transcriptomic comparison between IPF and donor lung distal explant tissue,5,Homo sapiens,Visium,Visium,lung,idiopathic pulmonary fibrosis,normal;disease,5,,train
GSE293043,Human and mouse adrenal glands are characterized by species-specific steroidogenic states and tissue turnover [Stereo-seq],3,Homo sapiens,Stereo-seq,Stereo-seq,adrenal gland,,normal,0,,train
GSE293065,Spatial transcriptomic atlas of aggressive osteosarcomas reveals shared gene surface expression and immune landscape.,26,Homo sapiens,Visium,Visium,other;lung;lymph node;heart;bone,osteosarcoma;bone osteosarcoma,disease,26,42399228,train
GSE293124,Concurrent genetic and non-genetic resistance mechanisms to KRAS inhibition in CRC,14,Homo sapiens,CosMx,CosMx,unknown;colon,colorectal carcinoma,disease,0,42167227,train
GSE293144,A Deep Dive into the Functional and Spatial Heterogeneity of Lung Interstitial Macrophages [Xenium],2,Mus musculus,Xenium,Xenium,lung,,perturbation;normal,1,42358977,test
GSE293199,A visual–omics foundation model to bridge histopathology image with transcriptomics,1,Homo sapiens,Xenium,Xenium,breast,triple-negative breast carcinoma,disease,1,40442373,train
GSE293427,Mapping Endothelial-Macrophage Interactions in Diabetic Vasculature: Role of TREM2 in Vascular Inflammation and Ischemic Response [Spatial Transcriptomics],11,Homo sapiens,Visium,Visium,blood vessel,diabetes mellitus,normal;disease,11,42018669,train
GSE293582,"Retinoic acid drives cell fate specification, maturation and retinal regionality in human retinal organoids [Visium]",4,Homo sapiens,Visium,Visium,eye,,normal,0,42031716,train
GSE293759,Spatial and Functional Specialization of Human Splenic Innate Lymphoid Cells [Xenium],3,Homo sapiens,Xenium,Xenium,spleen,,normal,0,,train
GSE293783,An organoid model of the human adrenal cortex identifies drivers of steroidogenesis and zonation [spatial],2,Homo sapiens,Visium HD,Visium HD,adrenal gland,,normal,2,,train
GSE293800,Cancer agnostic potential of CAR T cells targeting the urokinase plasminogen activator receptor,1,Homo sapiens,Xenium,Xenium,pancreas,,normal,1,41916312,train
GSE293896,Spatial transcriptomics Reveals Impact of APOE4 Allele on α-Synuclein Aggregation and Cell-Cell Communication in Lewy Body Dementia,10,Homo sapiens,Visium,Visium,brain,Lewy body dementia,normal;disease,10,41588135,train
GSE293970,Conversion of Th17 into exTh17 sustains rheumatoid-like IL-17-independent inflammatory arthritis [Xenium],3,Homo sapiens,Xenium,Xenium,other,arthritic joint disease,disease,1,41202149,val
GSE294006,Hypoxia shapes both therapeutic response and resistance in metastatic clear cell renal cell carcinoma [Spatial Transcriptomics],3,Homo sapiens,Visium,Visium,kidney,clear cell renal carcinoma,disease,3,42242232,train
GSE294097,P301S Mutant Tau-Driven Zebrafish Platform Enables Systematic Identification of Pharmacological GSK3β Inhibitors with Anti-Neurodegenerative Efficacy,4,Danio rerio,Stereo-seq,Stereo-seq,brain,tauopathy,disease;normal,0,,val
GSE294120,Study on the Effects of Retinoids on UVR-Induced Skin Photoaging [Spatial Transcriptomics],2,Mus musculus,Visium,Visium,skin,,disease;perturbation,2,41644086,val
GSE294212,The essential role of connective-tissue cells during axolotl limb regeneration,6,Ambystoma mexicanum,Xenium,Xenium,other,,normal;perturbation,6,,train
GSE294222,Spatial Visualization Provides Insight into Immune Modulation by an L-DBF Vaccine Formulation Against Shigella,8,Mus musculus,Visium,Visium,lung,,normal;perturbation,8,40336950,train
GSE294237,Single-Cell Multimodal Profiling Highlights Persistent Aortic Smooth Muscle Cell Changes in Diabetic Mice Despite Glycemic Control,1,Mus musculus,Xenium,Xenium,blood vessel,diabetes mellitus,disease,1,41641545,test
GSE294277,Integrative single cell RNA-sequencing and spatial transcriptomics uncovers distinct macrophage-fibroblast cross-talk in human hip synovium between patients with femoroacetabular impingement and osteoarthritis,10,Homo sapiens,Visium,Visium,other,osteoarthritis,disease,10,41524472,test
GSE294385,Spatial Multi-Omics Landscape of Colorectal Cancer Macro- and Micrometastases,37,Homo sapiens,Visium,Visium,unknown,colorectal cancer,disease,37,42425074,train
GSE294392,A four-dimensional spatial transcriptome atlas of barley caryopsis development and germination,35,Hordeum vulgare,Visium,Visium,plant,,normal,35,42015541,val
GSE294442,Bioengineered 3D human heart valve tissues with enhanced maturational properties for disease modelling and therapeutic applications [spatial transcriptomics],1,Homo sapiens,Stereo-seq,Stereo-seq,heart,,perturbation,0,,train
GSE294466,Xenium spatial transcriptomics of human carotid artery plaques,32,Homo sapiens,Xenium,Xenium,blood vessel,,disease;normal,32,41413386,train
GSE294469,Spatially organized progenitors in the zebrafish heart field determine cardiovascular patterning [MERFISH],2,Danio rerio,MERFISH/MERSCOPE,MERSCOPE,embryo (whole),,normal,0,41290702,train
GSE294669,Spatial Proteomics and Transcriptomics Reveal Early Immune Cell Organization in Pancreatic Intraepithelial Neoplasia,13,Homo sapiens,Visium,Visium,pancreas,pancreatic ductal adenocarcinoma;chronic pancreatitis;intraepithelial neoplasia,disease,13,40569674,test
GSE294759,Application of spatial transcriptomics across organoids for a high-resolution spatial whole-transcriptome benchmarking dataset,9,Mus musculus;Homo sapiens,Stereo-seq,Stereo-seq,head and neck;heart;brain;cartilage;lung;other;kidney,,normal,0,42164865,train
GSE294765,A skeletal muscle atlas shows neuromuscular junction adaptations to growth and atrophy,6,Mus musculus,Visium,Visium,skeletal muscle,,perturbation;normal,6,42019489,train
GSE294814,Spatially resolved profiling of host and bacteria RNAs in mammalian tissue,7,Mus musculus,DBiT-seq,microDBiT,colon;small intestine,,normal,0,,val
GSE294844,Transcriptional signature for dysplastic epidermal development in human pre-malignant skin,5,Homo sapiens,Visium,Visium CytAssist;Visium,skin,actinic keratosis,disease,4,,test
GSE294965,Spatio-temporal interaction of immune and renal cells determines glomerular crescent formation in autoimmune kidney disease,9,Homo sapiens,Xenium,Xenium,kidney,kidney disorder,disease,9,40393992,train
GSE295043,A spatiotemporal atlas of orchiectomy-induced modulation of cellular composition and gene expression in the mouse prostate,8,Mus musculus,Visium,Visium,prostate,,perturbation,8,40974890,train
GSE295060,Gain-of-function PPM1D mutations attenuate ischemic stroke,2,Mus musculus,Visium,Visium,brain,cerebral artery occlusion;ischemic stroke,disease,2,,train
GSE295061,Utx (Kdm6a) promotes differentiation non-catalytically in somatic self-renewing epithelia [Xenium],2,Mus musculus,Xenium,Xenium,skin,,normal;perturbation,2,40372430,train
GSE295206,Spatial transcriptomics of human dorsal root ganglia from subjects with a history of diabetes,16,Homo sapiens,Visium,Visium,peripheral nerve,diabetes mellitus,disease,16,40325011,train
GSE295237,Excitatory neurons and astrocytes-specific dysregulation and aberrant interactions are vulnerable to FCDI as suggested by single-cell spatial transcriptomics [Spatial transcriptomic],4,Homo sapiens,Visium,Visium,brain,,normal;disease,4,42068085,train
GSE295275,"Genomic and transcriptomic feature of HBV integration in treatment-naïve, HBeAg-positive children with chronic HBV infection",2,Homo sapiens,Visium,Visium,liver,infectious disease,disease,2,,val
GSE295606,Dermal adipocytes activate hair follicle stem cells through metabolic communication [SP],2,Mus musculus,Visium HD,Visium HD,skin,,normal,0,41130201,train
GSE295619,"Exploring an essential biomarker in pulmonary fibrosis: an integrated and cross-disease approach with spatial transcriptomics and single-cell RNA sequencing (Spatial Transcriptomics, part 2)",2,Homo sapiens,Visium,Visium,lung,pulmonary fibrosis,disease,2,40719154,train
GSE295730,Amygdala-liver signaling orchestrates rapid glycemic responses to stress and drives stress-induced metabolic dysfunction,12,Mus musculus,Xenium,Xenium,brain,,normal,12,40903586,train
GSE295815,The DLX/Notch axis is necessary for spatiotemporal regulation of neural cell fate,9,Mus musculus,Stereo-seq,Stereo-seq,brain,,normal;perturbation,0,,train
GSE295862,Selective remodelling of the adipose niche in obesity and weight loss [Xenium],12,Homo sapiens,Xenium,Xenium,adipose tissue,obesity disorder;overnutrition,disease;normal,12,40634602,train
GSE295967,Single-cell multi-omics reveal coordinated neoplastic and immune remodeling following KRAS inhibition [Spatial Transcriptomics],16,Mus musculus,Visium,Visium,other,neoplasm,disease,16,,train
GSE296053,Eosinophils Orchestrate Intestinal Remodeling and Promote Innate Defense During Reproduction,4,Mus musculus,Xenium,Xenium,small intestine,,normal,4,42129565,train
GSE296134,Single cell approaches define the murine leptomeninges:cortical brain interface as a  distinct cellular neighborhood comprised of neural and nonneural cell types,8,Mus musculus,Xenium,Xenium,brain,,normal,8,40780964,test
GSE296275,Distinct tissue niches contribute to prostate TRM cell differentiation and heterogeneity [Spatial Transcriptomics],4,Mus musculus,Xenium,Xenium,prostate,,perturbation,4,,train
GSE296301,Transient Senescence Following Myocardial Infarction: Characterization and Functional Implications in Cardiac Remodeling [SpatialTranscriptome],2,Mus musculus,Visium,Visium,heart,myocardial infarction,disease,2,,train
GSE296331,Creeping fat-derived mechanosensitive fibroblasts drive intestinal fibrosis in Crohn’s disease strictures [Xenium],8,Homo sapiens,Xenium,Xenium,small intestine,Crohn disease,disease;normal,8,40967215,val
GSE296375,Region- and cell type-specific changes in gene expression in the cerebellum after classical fear conditioning [Spatial Transcriptomics],3,Mus musculus,Visium,Visium,brain,,normal;perturbation,3,42032255,train
GSE296429,Spatial transcriptomic analysis of transplanted vascularized lung organoids,1,Homo sapiens,Slide-seq,Slide-seq,lung,,normal,0,,train
GSE296452,IL-1 Signaling Blockade in Human Lymphocytic Myocarditis,2,Homo sapiens,Visium,Visium,heart,myocarditis,disease,2,40600280,train
GSE296454,A spatio-cellular map of the mouse nodose ganglia,3,Mus musculus,Slide-seq,Slide-seq,head and neck,,normal,0,42483274,test
GSE296517,Interrogating the Synergistic Potential of Gemcitabine and Focused Ultrasound–Induced Thermal Ablation in Breast Cancer: Insights from the BR54 Trial via Spatial Transcriptomics,3,Homo sapiens,CosMx,CosMx,breast,triple-negative breast carcinoma;breast cancer,disease,0,,train
GSE296545,Spatial transcriptomic profiling of gene expression alterations following ACBP/DBI inhibition in a MASH-Driven HCC mouse model,4,Mus musculus,Visium,Visium,liver,hepatocellular carcinoma;metabolic dysfunction-associated steatohepatitis,disease,4,40628264,train
GSE296577,Persistent T cell Activation and Cytotoxicity against Glioblastoma Following Single Oncolytic Virus Treatment in a Clinical Trial,20,Homo sapiens,Xenium,Xenium,brain,brain neoplasm;glioblastoma,disease,19,41679299,train
GSE296581,Mouse uterine gene expressions during decidual processes [Visium],4,Mus musculus,Visium,Visium,uterus,,normal;perturbation,4,42154563,train
GSE296582,HMG Box-Containing Protein 1 (HBP1) Protects Against Pancreatic Injury in Acute Pancreatitis but Promotes Neoplastic Progression,6,Mus musculus,Visium,Visium,pancreas,acute pancreatitis,disease,6,40404099,train
GSE296613,Clearance of intracranial debris by ultrasound reduces inflammation and improves outcomes in hemorrhagic stroke models,4,Mus musculus,Stereo-seq,Stereo-seq,brain,hemorrhagic stroke;cerebrovascular disorder,disease;normal,0,41214344,val
GSE296623,Protocol for single-cell spatial transcriptomic profiling of cultured cells and engineered tissues without embedding or sectioning,1,Homo sapiens,Visium HD,Visium HD,other,breast cancer,disease,1,40938748,train
GSE296626,Spatial transcriptomics from paired pancreas and associated draining lymph nodes reveals a lymphotoxin-beta signature in human type 1 diabetes,36,Homo sapiens,Visium,Visium,pancreas;lymph node,autoimmune disorder of endocrine system;endocrine pancreas disorder;type 1 diabetes mellitus,normal;disease,36,40475580;41875135,train
GSE296660,Polyamines regulate adaptive antitumor immunity by functional specialization of regulatory T cells [Visium],2,Mus musculus,Visium,Visium,other,melanoma,disease,2,40749666,train
GSE296789,Spatio-molecular gene expression reflects dorsal anterior cingulate cortex structure and function in the human brain [spatial transcriptomics],21,Homo sapiens,Visium,Visium,brain,,normal,21,42241279,train
GSE296797,CD38+CD93+ microglia and macrophages drive neuroinflammation through glycolysis-histone lactylation axis in multiple sclerosis model mice,5,Mus musculus,Visium,Visium,spinal cord,demyelinating disease of central nervous system;multiple sclerosis,disease,5,,train
GSE296852,A cellular anatomy of normal adult human female urethra [Xenium],4,Homo sapiens,Xenium,Xenium,other;prostate,,normal,4,,train
GSE296896,High-resolution spatial transcriptomics of mouse intestine [Spatial-RNAseq],12,Mus musculus,BMK S1000,BMKMANU S3000,small intestine;brain,,perturbation,0,42373956,test
GSE296897,High-resolution spatial transcriptomics of DARLIN mouse [CRISPR array amplicon],36,Mus musculus,BMK S1000,BMKMANU S1000/S3000,small intestine;colon;brain,,perturbation,0,42373956,train
GSE296975,Defining Cellular Diversity at the Swine Maternal-Fetal Interface Using Spatial Transcriptomics and Organoids [MFI017_Visium],4,Sus scrofa,Visium,Visium,placenta,,normal,4,40875599,train
GSE296982,Single cell map of the adult female mouse urethra reveals epithelial and stromal macrophages with distinct functional identities,1,Mus musculus,Xenium,Xenium,other,,normal,1,40907791,train
GSE297058,Hereditary Chronic Pancreatitis Induced Plasticity Cooperates with Mutant Kras in Early Pancreatic Carcinogenesis,2,Mus musculus,Visium HD,Visium HD,pancreas,hereditary chronic pancreatitis,normal;disease,2,41419303,train
GSE297064,Targeting circulating mechanoresponsive monocytes and macrophages to reduce fibrosis,2,Homo sapiens,Visium,Visium,skin,,not stated;disease,2,41120571,train
GSE297068,A spatial code governs olfactory receptor choice and aligns sensory maps in the nose and brain,6,Mus musculus,MERFISH/MERSCOPE;Stereo-seq,MERSCOPE;Stereo-seq,head and neck,,normal,0,42054991,train
GSE297081,Inhibition of ACLY enhances tumor immunogenicity and resolves MASH-driven HCC,4,Mus musculus,Visium,Visium,liver,metabolic dysfunction-associated steatohepatitis;hepatocellular carcinoma,disease;normal,4,40739358,test
GSE297119,Integrating spatial and single-cell transcriptomics to characterize mouse long bone fracture healing process,3,Mus musculus,Visium,Visium,bone,bone fracture,disease,3,40483363,train
GSE297144,The HFE H63D variant in pancreatic cancer promotes epithelial-to-mesenchymal transition at the expense of cell cycle,8,Homo sapiens,Visium,Visium,pancreas,malignant pancreatic neoplasm,disease,8,,train
GSE297388,Spatial transcriptomics and scRNA-sequencing on gastrocnemius muscle form B6-mdx and D2-mdx mice,4,Mus musculus,Visium,Visium,skeletal muscle,Duchenne muscular dystrophy,disease,4,42067923,train
GSE297459,Human bladder cell spatial mapping,1,Homo sapiens,Xenium,Xenium,bladder,,not stated,1,,val
GSE297621,Spatial transcriptomics of Atg7 knockout mice reveals ATG7’s role in antimicrobial immunity against nontuberculous mycobacteria,2,Mus musculus,Visium,Visium,lung,infectious disease,disease,2,40730835,train
GSE297667,Nova-ST spatial transcriptomics of Lecanamab- and Lecanemab LALA-PG-treated xenotrasplanted human microglia [ST],4,Homo sapiens,Other,Nova-ST,brain,,disease,0,41286448,train
GSE297745,IL-17A Neutralization Prevents Immune Checkpoint Inhibitor-Associated Myocarditis and Synergistically Enhances Immune Checkpoint Blockade Therapy,4,Mus musculus,Visium,Visium,heart,myocarditis,disease,4,,train
GSE297945,A spatial transcriptomic atlas of acute neonatal lung injury across development and disease severity,34,Homo sapiens,Xenium,Xenium,lung,pulmonary hypoplasia;bronchopulmonary dysplasia;congenital heart disease;perinatal asphyxia;necrotizing enterocolitis;meningitis,normal;disease,8,40502191,train
GSE297947,IL-33/IL1RL1 (ST2) signalling drives immune suppression in HPV-mediated epithelial hyperplasia,1,Mus musculus,Visium,Visium,skin,,normal,1,42679897,train
GSE298021,Spatial Transcriptomics of Developing Wheat Seed Reveals Concentric Gene Expression Zones and Subgenome Biased Expression of Key Genes,3,Triticum aestivum,Stereo-seq,Stereo-seq,plant,,normal,0,40904198;42192524,train
GSE298115,Spatial Transcriptomic Analysis of Mouse Parathyroid Gland Cells Expressing an Activating Variant of Gcm2,6,Mus musculus,Visium,Visium,other,,normal;perturbation,2,41025096,test
GSE298286,In silico reconstruction of primary and metastatic tumor architecture using GIS-augmented spatial transcriptomics,14,Homo sapiens,Visium,Visium,bone;breast,breast neoplasm;metastatic neoplasm,disease,14,41734374,train
GSE298314,Microglia-astrocyte crosstalk regulates synapse remodeling via Wnt signaling,4,Mus musculus,MERFISH/MERSCOPE,MERSCOPE,brain,,perturbation,0,40934914,val
GSE298545,Molecular pathology of acute spinal cord injury in middle-aged mice,4,Mus musculus,Visium,Visium,spinal cord,spinal cord injury,disease,4,40653490,test
GSE298591,MERFISH analysis of Sst-Cre mediated Dnmt1 knockout at E16.5,2,Mus musculus,MERFISH/MERSCOPE,MERSCOPE,brain,,normal;perturbation,0,40707493,train
GSE298650,A dataset of spatially resolved transcriptomics of post-natal cardiac development in mice,5,Mus musculus,Stereo-seq,Stereo-seq,heart,,normal,0,40890142,train
GSE298680,A molecular atlas of cellular vulnerability and resilience in the parkinsonian striatum.,24,Mus musculus,Visium,Visium,brain,,normal;disease;perturbation,0,,train
GSE298689,Spatially resolved single-cell analysis uncovers protein kinase Cδ-expressing microglia with anti-tumor activity in glioblastoma [Spatial Transcriptomics],1,Mus musculus,Visium,Visium,brain,,perturbation,1,41503214,train
GSE298742,Hand1 gene replacement with Hand2 reveals overlap in function with unique occurrence of omphalocele and heart defects [Spatial Transcriptomics],15,Mus musculus,Visium,Visium,embryo (whole),omphalocele,normal;disease,15,,train
GSE298774,Spatial gene expression and microenvironmental changes in the transition of nevus to melanoma,9,Homo sapiens,Visium,Visium,skin,melanocytic nevus;melanoma,disease,9,42258703,test
GSE298872,Breast Cancer Remodels Lymphatics in Sentinel Lymph Nodes,4,Homo sapiens,Visium HD,Visium HD,lymph node,breast cancer,normal;disease,4,41249124,train
GSE298921,Salivary gland transcriptomic analysis in the IL-14α transgenic mouse model of Sjögren’s disease using Visium V1 3' spatial gene expression assay,2,Mus musculus,Visium,Visium,oral cavity,,normal;disease,2,40697343,test
GSE299025,Immunosuppressive tumor microenvironment of osteosarcoma [Spatial transcriptomics],2,Homo sapiens,Visium,Visium,bone,osteosarcoma,disease,2,40647416,train
GSE299027,Molecular Characterization of Meningioma,19,Homo sapiens,Visium,Visium,meninges,meningioma,disease,18,,val
GSE299051,Immune Dynamics in Palmoplantar Pustulosis Unveiled by Single-Cell and High-Resolution Spatial Transcriptomics [Spatial Transcriptomics],2,Homo sapiens,Visium HD,Visium HD,skin,palmoplantar pustulosis,disease,2,41740929,val
GSE299069,Actin Dysregulation Induces Neuroendocrine 1 Plasticity and 2 Immune Evasion: A Vulnerability of Small Cell Lung Cancer,2,Mus musculus,Xenium,Xenium,lung,small cell lung carcinoma,disease,2,41353272,train
GSE299165,Profiling the Microenvironment in Tuberous Sclerosis Complex-Associated Angiomyolipoma: Insights from Spatial Gene Expression Analysis,3,Homo sapiens,Visium,Visium,kidney,tuberous sclerosis;kidney cancer;angiomyolipoma,disease,3,41309810,train
GSE299193,Profiling the spatial architecture of multiple myeloma in human bone marrow trephines with spatial transcriptomics [human],22,Homo sapiens,Xenium,Xenium,bone marrow,monoclonal gammopathy of uncertain significance;immune system cancer;plasma cell neoplasm;plasma cell myeloma;smoldering plasma cell myeloma,normal;disease,22,40643106,train
GSE299207,Profiling the spatial architecture of multiple myeloma in human bone marrow trephines with spatial transcriptomics,1,Mus musculus,Xenium,Xenium,bone marrow,,normal,1,40643106,train
GSE299256,Positionally distinct interferon-stimulated dermal immune-acting fibroblasts promote neutrophil recruitment in Sweet's syndrome.,1,Homo sapiens,CosMx,CosMx,skin,,disease,0,40516577,train
GSE299374,Meningioma cell reprogramming and microenvironment interactions underlie brain invasion,2,Homo sapiens,Visium,Visium,meninges,meningioma,disease,2,41476144,train
GSE299386,Comparative transcriptomics reveals differences in cortical cell type organization between metatherian and eutherian mammals [Stereo-seq],2,Monodelphis domestica;Mus musculus,Stereo-seq,Stereo-seq,brain,,normal,0,42005962,train
GSE299434,Combined epigenetic therapy with FACT and BET inhibitors remodels chromatin and disrupts oncogenic transcription in Diffuse Midline Glioma [Xenium],4,Mus musculus,Xenium,Xenium,brain,glioma,disease,4,41533777,train
GSE299494,Spatial transcriptomic mapping of canine osteosarcoma reveals immune microenvironment features linked to survival,14,Canis lupus familiaris,Visium,Visium,bone;unknown,canine osteosarcoma;osteosarcoma,disease,14,42056464,train
GSE299573,Spatial transcriptomics of bladder cancer with squamous differentiation,1,Homo sapiens,Visium HD,Visium HD,bladder,,disease,1,41917522,train
GSE299610,Subclinical Neonatal HSV-1 Infection Triggers Immune Responses and Modulates Neurological Pathways Leading to Long-Term Sequelae [Visium],2,Mus musculus,Visium,Visium,brain,infectious disease,disease,2,,train
GSE299631,Spatiotemporal organisation of residual disease in mouse and human BRCA1-deficient mammary tumors and breast cancer,37,Mus musculus;Homo sapiens,Visium,Visium,breast,breast cancer;triple-negative breast carcinoma,disease;normal,37,,train
GSE299660,Spatial transcriptomic profiling of seborrhoeic keratoses,4,Homo sapiens,Visium,Visium,skin,keratosis,disease,4,42413572,train
GSE299772,Infusible Extracellular Matrix Biomaterial Enhances and Expedites Cell-Specific Pro-Repair Following Acute Myocardial Infarction,12,Rattus norvegicus,Visium,Visium,heart,acute disease;acute myocardial infarction,disease;normal,12,41292930;41414646,train
GSE299776,Virus-Human Chromatin Interactions Reorganise 3D Genome and Hijack KDM5B for Promoting Metastasis in Nasopharyngeal Carcinoma [10X Visum Spatial Transcriptome],1,Homo sapiens,Visium,Visium,head and neck,nasopharyngeal carcinoma,disease,1,40759888,train
GSE299786,Comparison of imaging based single-cell resolution spatial transcriptomics profiling platforms using formalin-fixed paraffin-embedded tumor samples [CosMx],4,Homo sapiens,CosMx,CosMx,lung,lung adenocarcinoma;pleural mesothelioma,disease,0,41006245,train
GSE299810,Distinct Layer 6b transcriptomic subtypes parcellate the cortical mantle,8,Mus musculus,Xenium,Xenium,brain,,normal,8,41083138,train
GSE299816,Differential expression analysis in single cell and spatial RNASeq without model assumptions,1,Mus musculus,Visium HD,Visium HD,bone,,normal,1,,train
GSE299886,Comparison of imaging based single-cell resolution spatial transcriptomics profiling platforms using formalin-fixed paraffin-embedded tumor samples [MERFISH],3,Homo sapiens,MERFISH/MERSCOPE,MERFISH,lung;other,lung adenocarcinoma;pleural mesothelioma,disease,0,41006245,test
GSE299911,Chronic periodontitis induces neurobehavioral deficits via microbiota–glia–endocrine interactions,2,Mus musculus,Visium,Visium,brain,chronic periodontitis,normal;disease,0,,train
GSE299970,10X Visium Spatial transcriptomics of pancreatic caner patient tissue.,1,Homo sapiens,Visium,Visium,pancreas,malignant pancreatic neoplasm,disease,1,41722836,train
GSE300007,Comparison of imaging based single-cell resolution spatial transcriptomics profiling platforms using formalin-fixed paraffin-embedded tumor samples [Xenium],6,Homo sapiens,Xenium,Xenium,lung;other,lung adenocarcinoma;pleural mesothelioma,disease,0,41006245,train
GSE300023,Multi-omics uncovers the immune landscape and molecular signatures associated with antibody-dependent cellular cytotoxicity in SARS-CoV-2 clearance,7,Mus musculus,Visium,Visium,lung,COVID-19,disease,7,,train
GSE300112,The cervicovaginal microbiome associates with spatially restricted host transcriptional signatures throughout the human ectocervical epithelium and submucosa,12,Homo sapiens,Visium,Visium,uterus,,normal,12,41218071,train
GSE300147,Xenium Spatial Transcriptomics of Head and Neck Single Cell Carcinoma,18,Homo sapiens,Xenium,Xenium,head and neck;oral cavity;airway,head and neck squamous cell carcinoma;ameloblastoma;cancer,disease,18,41961948,train
GSE300289,Early lineage divergence segregates sensory-related and motor-associative identities in the thalamus [Spatial Transcriptomics E17],1,Mus musculus,Slide-seq,Slide-seq,brain,,normal,0,,train
GSE300293,"Single-cell and spatial transcriptomics analysis of tobacco-associated lung adenocarcinoma development, and in response to targeting inflammation alone or in combination with immune checkpoint blockade in precancerous phase [Spatial transcriptomics]",19,Mus musculus,Visium,Visium,lung,lung adenocarcinoma;carcinoma;glandular cell neoplasm;adenocarcinoma;non-small cell lung carcinoma,disease,19,41202811,train
GSE300303,Chikungunya virus persists in joint associated macrophages and promotes chronic disease [Xenium],6,Mus musculus,Xenium,Xenium,other,vector-borne disease;chikungunya,normal;disease,6,41922840,train
GSE300380,Spatial Transcriptomics of Patients with Kaposi Sarcoma Identifies Mechanisms of Immune Evasion,7,Homo sapiens,Visium,Visium,skin,Kaposi's sarcoma,disease,7,41342328,val
GSE300434,Migratory astrocyte subset drives CNS regeneration after astrocyte loss,8,Mus musculus,Visium HD,Visium HD,brain,,disease;perturbation,6,42493549,train
GSE300445,Spatial tumour-immune ecosystems shape the efficacy of anti-PD1 immunotherapy in primary cutaneous melanoma [Spatial Transcriptomics],4,Homo sapiens,Visium,Visium,skin,cutaneous melanoma,disease,4,42315253,train
GSE300585,Thor: a platform for cell-level investigation of spatial transcriptomics and histology [Heart Failure],1,Homo sapiens,Visium,Visium,heart,heart failure,disease,1,40764306,train
GSE300613,Spatial transcriptomics dataset of primary tumours from MDA-MB-231 xenograft model,2,Homo sapiens,Visium,Visium,other,neoplasm,disease,2,40552975,test
GSE300645,Dysmorphic neurons express markers of inhibitory glycinergic signaling in focal cortical dysplasia,4,Homo sapiens,Visium,Visium,brain,cerebral cortical dysplasia,disease,4,40957662,train
GSE300676,Identification of key molecules promoting lepidic–filigree micropapillary–conventional/overt micropapillary progression in lung adenocarcinoma: A comprehensive gene expression analysis study using the spatial gene expression solution methodology,8,Homo sapiens,Visium,Visium,lung,lung adenocarcinoma,disease,7,41040912,train
GSE300692,Thor: a platform for cell-level investigation of spatial transcriptomics and histology [Bladder Cancer],1,Homo sapiens,Visium HD,Visium HD,bladder,cancer,disease,1,40764306,train
GSE300851,DGAT: A Dual-Graph Attention Network for Inferring Spatial Protein Landscapes from Transcriptomics,6,Homo sapiens,Visium,Visium,kidney;lung,chronic kidney disease;lung disorder,disease;normal,0,,train
GSE300895,High resolution spatial trancrioptomics combined with deep learning-based image segmentation enables single-cell spatial profiling of archival FFPE kidney tissue from patients with idiopathic nephrotic syndrome,3,Homo sapiens,Visium HD,Visium HD,kidney,idiopathic nephrotic syndrome,disease,3,,train
GSE301012,Spatial transcriptomic profiling uncovers the molecular effects of the neurotoxicant polychlorinated biphenyls (PCBs) in the brains of adult mice,4,Mus musculus,Visium,Visium,brain,,perturbation,4,41620578,train
GSE301260,Spatiotemporal transcriptomic mapping reveals region-specific glial activation and astrocyte subtype shifts in epileptogenesis beyond the hippocampus,16,Rattus norvegicus,Visium,Visium,brain,,disease;normal,16,41540500,train
GSE301265,Spatial Transcriptomics Reveals Local Subtype-Specific Identity and Signaling within Multifocal Small Intestinal Neuroendocrine Tumors,8,Homo sapiens,Visium,Visium,small intestine,neuroendocrine neoplasm,disease,8,41779010,train
GSE301280,Spatial transcriptomics reveals dysfunctional lipid metabolism and abnormal pilosebaceous differentiation in acne vulgaris,24,Homo sapiens,Xenium,Xenium,skin,acne,normal;disease,23,,train
GSE301306,Spatial transcriptomics of the human first trimester decidua,4,Homo sapiens,Visium,Visium,placenta,,normal,4,42248577,train
GSE301435,A parabrachial hub for the prioritization of survival behavior during pain,2,Mus musculus,CosMx,CosMx,brain,,perturbation,0,41062698,train
GSE301486,Spatial transcriptomics data of EMP2-progressive symmetric erythrokeratoderma,1,Homo sapiens,Visium HD,Visium HD,skin,erythrokeratoderma,disease,1,40758889,val
GSE301696,Single-cell spatial transcriptomic profiling defines a pathogenic inflammatory niche in chronic active multiple sclerosis lesions - Microglia cell culture,4,Mus musculus,MERFISH/MERSCOPE,MERFISH,other;brain,,normal;perturbation,0,,train
GSE301720,Integrated single-cell and spatial analysis identifies context-dependent myeloid-T cell interactions in head and neck cancer immune checkpoint blockade response,8,Homo sapiens,Visium,Visium,head and neck;airway;oral cavity,malignant tumor of neck,disease,8,41837744,train
GSE301973,The spatial transcriptomics of EGFR-mutant non-small cell lung cancer before osimertinib treatment,2,Homo sapiens,Visium HD,Visium HD,lung,non-small cell lung carcinoma,disease,2,41152910,train
GSE302128,Xenium Spatial Transcriptomics of Cisplatin-Resistant Head and Neck Tumors in Humanized Mice Treated with PI3K Inhibitor Gedatolisib,8,Mus musculus,Xenium,Xenium,oral cavity,neoplasm of neck,disease,8,41053162,test
GSE302160,4R-Tau Seeding Activity Reveals Molecular Subtypes in Progressive Supranuclear Palsy,4,Homo sapiens,Visium,Visium,brain,"supranuclear palsy, progressive, 1;palsy",disease,4,41476155,val
GSE302187,Murine model of MRSA-induced kidney injury (spatial transcriptomics),2,Mus musculus,Visium,Visium,kidney,pyelonephritis,disease,0,,train
GSE302264,PHLOWER - Single cell trajectory analysis using Decomposition of the Hodge Laplacian [Xenium],4,Homo sapiens,Xenium,Xenium,kidney,,normal;perturbation,4,,train
GSE302356,Decoding Lymphangioleiomyomatosis (LAM) Niche Environment via Integrative Analysis of Single Cell Multiomics and Spatial Transcriptomics,3,Homo sapiens,Visium HD;Xenium;Visium,Visium HD;Xenium;Visium,lung,lymphangioleiomyomatosis,disease,3,,test
GSE302449,Rod-shaped microglia interact with neuronal dendrites to regulate cortical excitability in TDP-43 related neurodegeneration,4,Mus musculus,Visium,Visium,brain,,normal;disease,4,40975067,test
GSE302470,Inhibiting LSD1 unlocks retinoid AP-1 programming to activate epithelial immunity and skin tumor suppression [Xenium embryo],2,Mus musculus,Xenium,Xenium,skin,,normal;perturbation,2,41817619,train
GSE302473,Inhibiting LSD1 unlocks retinoid AP-1 programming to activate epithelial immunity and skin tumor suppression [Xenium tumor],2,Mus musculus,Xenium,Xenium,skin,skin squamous cell carcinoma,disease,2,41817619,train
GSE302474,Inhibiting LSD1 unlocks retinoid AP-1 programming to activate epithelial immunity and skin tumor suppression [Xenium CreERT],2,Mus musculus,Xenium,Xenium,skin,skin disorder,perturbation;disease,2,41817619,train
GSE302502,Spatial immune profiling defines a subset of human gliomas with functional tertiary lymphoid structures [Xenium],12,Homo sapiens,Xenium,Xenium,brain,glioma,disease,12,41125076,train
GSE302569,Elucidating the fibrotic niche and cellular dynamics in crohn’s disease-associated fibrostenosis,2,Homo sapiens,Visium,Visium,small intestine,Crohn disease,disease,2,41344440,train
GSE302642,IDH-mutant gliomas arise from glial progenitor cells harboring the initial driver mutation (Related accession no. GSE275791) - Spatial transcriptomics dataset,6,Homo sapiens,Xenium,Xenium,brain,oligodendroglioma;astrocytoma (excluding glioblastoma);astrocytic tumor,disease;normal,0,41505555,train
GSE302677,Spatial transcriptomics reveals injury-responsive compartments and coordinated immune–fibrotic signaling  in ANCA-associated renal vasculitis,3,Homo sapiens,Visium,Visium,kidney,anti-neutrophil cytoplasmic antibody-associated vasculitis,normal;disease,3,42602048,train
GSE302815,Spatial transcriptional features of MYCN niche in liver tumorigenesis.,4,Mus musculus,Visium,Visium,liver,,disease,4,41706888,train
GSE303036,Eye-conic' spatial transcriptomics of keratoconus corneas,13,Homo sapiens,Visium,Visium,eye,keratoconus,disease;normal,13,41931003,train
GSE303070,A spatial atlas of colorectal cancer reveals the influence of stromal niches on tumour differentiation,352,Homo sapiens,CosMx,CosMx,colon;rectum,colonic neoplasm;colorectal cancer;colonic disorder;intestinal cancer,disease,0,,val
GSE303162,A novel CAF population coordinates hyper-suppressive regulatory T cell recruitment and localization in lung cancer [Spatial Transcriptomics],2,Mus musculus,Visium,Visium,lung,lung cancer,disease,2,42581185,train
GSE303530,Inhibition of HIF1 signaling as a therapeutic option for metastatic castration-resistant prostate cancer.,1,Mus musculus,Visium,Visium,prostate,prostate cancer,disease,1,41896221,train
GSE303546,Cytokine-linked remodeling of the immune microenvironment is a hallmark of transformation in follicular lymphoma [VisiumHD],5,Homo sapiens,Visium HD,Visium HD,lymph node,lymph node disorder;follicular lymphoma,disease,5,,test
GSE303705,A Spatial and Temporal Transcriptomic Atlas of Mouse Intestinal Regeneration in the Jejunum,4,Mus musculus,Visium HD,Visium HD,small intestine,,perturbation,4,,val
GSE303764,Spatial transcriptomics of the normal and cytomegalovirus-infected guinea pig placenta,12,Cavia porcellus,Visium,Visium,placenta,,disease;normal,12,,test
GSE303809,A Single-Cell and Spatial Atlas of Early Human Olfactory Development,5,Homo sapiens,MERFISH/MERSCOPE,MERFISH,other;head and neck;embryo (whole);unknown,,normal,0,41997969,train
GSE303933,Obstetric complications in pregnant people with Fontan Circulation: identifying candidate pathologic pathways in the placenta,6,Homo sapiens,Visium,Visium,placenta,,normal;disease,6,42597080,train
GSE304111,Spatial transcriptomics analysis of mouse liver tissue during Alcohol-associated liver disease development and resolution,1,Mus musculus,CosMx,CosMx,liver,liver disorder,disease,0,,train
GSE304124,Mapping Cellular Senescence in Human Dental Follicle and Odontogenic Keratocyst,1,Homo sapiens,Visium,Visium,oral cavity,Keratocystic odontogenic tumor,disease,1,42123694,train
GSE304160,Targeting CyclinD1-CDK6 to Mitigate Senescence-Driven Inflammation and Age Associated Functional Decline,4,Mus musculus,CosMx,CosMx,liver,,normal,0,40766702;41509421,train
GSE304504,Single-cell and spatial transcriptomic analyses of gene therapy-associated retinal inflammation in non-human primates,4,Macaca mulatta,Visium,Visium,eye,,perturbation;normal,4,42137601,test
GSE304561,Heterogeneity in B- and epithelial-cell senescence in the pathogenesis of COPD/emphysema [scRNA-seq],7,Homo sapiens,Visium,Visium,lung,pulmonary emphysema,normal;disease,7,,train
GSE304669,Spatial transcriptomics reveals distinct role of monocytes/macrophages with high FCGR3A expression in kidney transplant rejections,4,Homo sapiens,Visium,Visium,kidney,transplant rejection,normal;disease,4,41030449,val
GSE304762,Deciphering Precursor Cell Dynamics in Esophageal Preneoplasia via Genetic Barcoding and Single-Cell Transcriptomics,2,Mus musculus,Xenium,Xenium,esophagus;other,esophageal squamous cell carcinoma,normal;disease,2,41337486;42239047,train
GSE304811,RHOAY42C-driven cell lineage plasticity and immune remodeling of diffuse gastric cancer,2,Mus musculus,Xenium,Xenium,other,diffuse gastric cancer,disease,2,,train
GSE304962,Multi-omics analyses reveal DjTcf4 critical for proper timing of differentiation in planarian regeneration,4,Dugesia japonica,Visium,Visium,other,,perturbation,4,,train
GSE305111,Rete ridges form via evolutionarily distinct mechanisms in mammalian skin,3,Sus scrofa,Stereo-seq,Stereo-seq,skin,,normal,0,41639458,train
GSE305116,Spatial transcriptomics reveals distinct immune microenvironment characteristics between intestinal-type gastric cancer and paired normal gastric mucosa.,2,Homo sapiens,Visium,Visium,stomach,gastric cancer,disease,0,41734377,val
GSE305314,Intercellular signaling and synaptic deconstruction uncovered by single-cell and spatial transcriptomics in an AD tauopathy model,4,Rattus norvegicus,Visium,Visium,brain,Alzheimer disease,disease;normal,4,41249845,train
GSE305393,Microbial signals in primary and metastatic brain tumors [CosMx],2,Homo sapiens,CosMx,CosMx,brain,brain neoplasm;glioma,disease,0,41238915,val
GSE305629,Neutrophils and CD8+ T cells in Muscle-invasive Bladder Cancer (MIBC),2,Homo sapiens,Xenium,Xenium,bladder,cancer,disease,2,42009646,train
GSE305911,Engineered thoracic spinal cord organoids for transplantation after spinal cord injury,2,Mus musculus,Visium,Visium,spinal cord,spinal cord injury,disease,2,41136603,train
GSE305978,Thyroid Hormone Promotes Fetal Neurogenesis [CosMx],1,Homo sapiens,CosMx,CosMx,brain,,perturbation,0,40906530,train
GSE306019,Genetic deletion of Usp22 in KRASG12D-p53-null driven mouse lung cancer [Visium],2,Mus musculus,Visium,Visium,lung,lung cancer,disease,2,42707650,train
GSE306111,Spatial transcriptomics of human FALD and normal livers,5,Homo sapiens,CosMx,CosMx,liver,liver disorder,normal;disease,0,41758081,test
GSE306130,Spatial biology reveals macrophage dysfunction in immunosuppressed non-melanoma skin cancer [Xenium Spatial Transcriptomics],14,Homo sapiens,Xenium,Xenium,skin,skin carcinoma;squamous cell carcinoma;basal cell carcinoma,disease,14,42556334,train
GSE306150,Spatial gene expression profiling of aortitis samples.,10,Homo sapiens,Xenium,Xenium,blood vessel,aortitis;IgG4-related aortitis;aortic valve stenosis,disease,10,41948935,train
GSE306288,Spatial transcriptomic profiling of the human aortic valve reveals cellular sex differences near sites of calcification,8,Homo sapiens,Visium,Visium,blood vessel;heart,calcinosis,disease,8,42206364,train
GSE306327,Scar-associated endothelial-stellate cellular crosstalk drives fibrosis resolution in MASH [Spatial Transcriptomics],2,Mus musculus,Visium,Visium,liver,metabolic dysfunction-associated steatohepatitis,disease,2,,test
GSE306374,Genetic profiles of small intestinal and colonic metaplastic Paneth cells by spatial transcriptomics,2,Homo sapiens,Visium HD,Visium HD,small intestine,ulcerative colitis,disease,2,41904124,test
GSE306506,Unveiling Transcriptional Heterogeneity and Discovering Footprints in Pediatric Medulloblastoma via Spatial RNA-Seq and Machine Learning,7,Homo sapiens,Visium,Visium,brain,childhood medulloblastoma,disease,7,42449993,train
GSE306575,Spatial and single-nucleus transcriptomic profiling of CHB liver biopsies,9,Mus musculus;Homo sapiens,Visium,Visium,liver,hepatocellular carcinoma,disease;perturbation;normal,0,41810427,train
GSE306617,"Clinical, genomic, and spatial transcriptomic features of pancreatic adenosquamous carcinoma",11,Homo sapiens,Visium,Visium,pancreas,pancreatic adenosquamous carcinoma,disease,11,,val
GSE306678,SPP1+ Macrophages Contribute to Hair Growth in Contact Hypersensitivity,1,Mus musculus,Visium HD,Visium HD,skin,hypersensitivity reaction disease,disease,1,,train
GSE306706,Spatial transcriptomics and N-glycoproteomics reveal breed-dependent immune and structural responses in Mycoplasma hyopneumoniae-infected pig lungs,4,Sus scrofa,Visium,Visium,lung,infectious disease,normal;disease,4,,train
GSE306833,10X VisiumHD Spatial transcriptomics of small intestine from mice fed stearic acid-rich high fat diet (HFD).,2,Mus musculus,Visium HD,Visium HD,small intestine,,normal;perturbation,2,41616823,train
GSE306852,Spatial Analysis of T Cell Clonality in Autoimmune Kidney Disease Using TRV Probes,13,Homo sapiens,Xenium,Xenium,kidney,kidney disorder,normal;disease,13,42228574,train
GSE306881,Peptidoglycan from Bifidobacterium adolescentis enhances IL-10 production in regulatory B cells to alleviate gut inflammation,2,Homo sapiens,Xenium,Xenium,small intestine,Crohn disease,disease,2,,val
GSE307031,Comparative single-cell multiomic analysis reveals evolutionarily conserved and species-specific cellular mechanisms mediating natural retinal aging [Mouse_Xenium],6,Mus musculus,Xenium,Xenium,eye,,normal;perturbation,6,,train
GSE307128,Mapping the Dialogue: Decoding Alveolar Stem-Niche Interactions [II],4,Mus musculus,Visium HD,Visium HD,lung,,disease,4,42418498,train
GSE307215,Spatiotemporal Single-Cell Profiling Reveals T Cell Clonal Dynamics and Phenotypic Plasticity in Human Graft-versus-Host Disease,8,Homo sapiens,Visium HD,Visium HD,small intestine;other,graft versus host disease,disease,5,42754741,val
GSE307404,Schizophrenia-linked gene expression changes across cortical layers and cellular microenvironments in human prefrontal cortex [Xenium],24,Homo sapiens,Xenium,Xenium,brain,schizophrenia,disease,24,,train
GSE307496,Dissecting the development of bovine testicular tissue using spatial transcriptomics,2,Bos taurus,Stereo-seq,Stereo-seq,testis,,normal,0,41639718,train
GSE307504,Single-cell and spatial transcriptomic atlas of pathological scars uncovers neuro-fibroblast crosstalk mechanisms across scar types,2,Homo sapiens,Visium,Visium,skin,keloid,disease,2,,train
GSE307534,"Spatial transcriptomics analysis of normal lung tissues, precursor lung lesions and invasive lung adenocarcinomas",56,Homo sapiens,Visium,Visium,lung,glandular cell neoplasm;lung adenocarcinoma,disease;normal,56,41202811,train
GSE307586,Spatiomolecular mapping reveals anatomical organization of heterogeneous cell types in the human nucleus accumbens [Spatial Transcriptomics],38,Homo sapiens,Visium,Visium,brain,,normal,38,40964296;42385698,train
GSE307588,Spatial profiling of hypoxic injury in human kidney organoids,25,Homo sapiens,Xenium,Xenium,kidney,,perturbation;normal;disease,0,42613631,train
GSE307661,Belantamab Mafodotin Triggers Immune Invigoration in Multiple Myeloma Via Inflammatory and Immunogenic Cell Death [Xenium],3,Homo sapiens,Xenium,Xenium,bone marrow,plasma cell myeloma,disease,3,,test
GSE307719,Cellular and molecular signatures of the vascular microenvironment define the pre-metastatic brain and meninges [MERFISH],8,Mus musculus,MERFISH/MERSCOPE,MERSCOPE,brain;meninges,neoplasm,normal;disease,0,,train
GSE307744,Human bladder Visium spatial gene expression,1,Homo sapiens,Visium,Visium,bladder,,not stated,1,,train
GSE307817,A MEF2C transcription factor network regulates proliferation of glomerular endothelial cells in diabetic kidney disease,12,Homo sapiens,Visium,Visium,kidney,diabetic kidney disease;diabetes mellitus;chronic kidney disease;kidney disorder;glucose metabolism disease,disease,12,42055320,train
GSE307866,Impact of Alzheimer’s disease risk factors and local neuromelanin content on the transcriptomic landscape of the human locus coeruleus,43,Homo sapiens,Visium,Visium,brain,,normal;not stated,43,41278831,train
GSE307895,Genital herpes shedding episodes associate with alterations in the spatial organization and activation of mucosal immune cells,13,Homo sapiens,Xenium,Xenium,other,bacterial vaginosis;genital herpes,normal;disease,0,41252205,train
GSE307951,Ribosomal heterogeneity revealed by a spatial transcriptomics in the water fern Ceratopteris richardii,1,Ceratopteris richardii,BMK S1000,BMKMANU S1000/S3000,plant,,normal,0,41635689,train
GSE307990,Spatial and single cell transcriptomics in the human Entorhinal Cortex across diverse risk of Alzheimer’s disease [Visium],31,Homo sapiens,Visium,Visium,brain,Alzheimer disease,normal;disease,31,41332786,train
GSE308146,Systematic benchmarking of imaging spatial transcriptomics platforms in FFPE tissues - CosMx Data,4,Homo sapiens,CosMx,CosMx,unknown;other,cancer,disease;normal,0,41266321,train
GSE308147,Systematic benchmarking of imaging spatial transcriptomics platforms in FFPE tissues - MERSCOPE Data,2,Homo sapiens,MERFISH/MERSCOPE,MERSCOPE,breast;lung,cancer,disease;normal,0,41266321,train
GSE308148,Systematic benchmarking of imaging spatial transcriptomics platforms in FFPE tissues - Xenium Data,8,Homo sapiens,Xenium,Xenium,breast;lung;unknown,cancer,disease;normal,7,41266321,train
GSE308167,Integration of Imaging-based and Sequencing-based Spatial Omics Mapping on the Same Tissue Section via DBiTplus,3,Homo sapiens,DBiT-seq,DBiT-seq,lymph node,B-cell chronic lymphocytic leukemia;diffuse large B-cell lymphoma,not stated;disease,0,41540123,train
GSE308260,Spatial transcriptomics for intrathoracic adhesion in mice,1,Mus musculus,Visium,Visium,lung,,perturbation,1,42230567,train
GSE308275,Integrated single-cell and spatial transcriptomics of ovarian immune landscape reveal role of distinct macrophages in classic galactosemia associated with premature ovarian insufficiency,2,Homo sapiens,Visium,Visium,ovary,,normal,2,42226209,train
GSE308486,Novel biomarker for prostatic ductal adenocarcinoma identified using spatial transcriptomic analysis,6,Homo sapiens,Visium,Visium,prostate,adenocarcinoma,disease,6,,train
GSE308507,High Resolution Spatial Mapping of Microbiome-Host Interactions via in situ Polyadenylation and Spatial RNA Sequencing (Stereoseq),5,Mus musculus,Stereo-seq,Stereo-seq,colon;small intestine,,normal,0,41792309,train
GSE308623,Spatial dynamics of brain development and neuroinflammation,28,Mus musculus,ST (legacy),ST (legacy),brain,,normal;perturbation;disease,0,41193846,train
GSE308624,Spatial and functional dissection of cancer-associated fibroblasts-mediated immune modulation in H. pylori-associated gastric cancer,71,Homo sapiens,CosMx,CosMx,stomach,gastric cancer,disease,0,41194113,train
GSE308697,Divergent cytotoxic and immunomodulatory immune programs distinguish morbilliform drug eruption from SDRIFE,4,Homo sapiens,Xenium,Xenium,skin,,disease,4,,train
GSE308699,YAP-driven stemness and TEAD-induced neuroendocrine cells drive resistance to KRASG12C therapies in metastatic colorectal cancer [Xenium Spatial Transcriptomics],5,Homo sapiens,Xenium,Xenium,lung;other;bone;colon;liver,cancer;colorectal cancer,disease,5,,train
GSE308929,An Integrated Transcriptomics Atlas of Healthy Human Skin Focusing on the Pilosebaceous Unit,2,Homo sapiens,Visium HD,Visium HD,skin,,normal,2,,train
GSE308952,Peripheral glia constitute a pro-reparative niche triggering skin wound healing [Spatial Transcriptomics],1,Mus musculus,Stereo-seq,Stereo-seq,skin,,perturbation,0,41512873,train
GSE308959,The origin of hepatocellular carcinoma is regulated by metabolic zonation [Xenium],3,Mus musculus,Xenium,Xenium,liver,hepatocellular carcinoma,disease;normal,3,41196951,train
GSE309269,Transcriptional programs dictating tumor cell fate decisions in neuroblastoma lymph node metastasis [spatial transcriptomics],2,Homo sapiens,Visium,Visium,adrenal gland;lymph node,neuroblastoma,disease,2,41279557;42467756,test
GSE309408,Comparative Eye Transcriptome Atlas,8,Anolis carolinensis;Taeniopygia guttata;Columba livia;Gallus gallus,Visium,Visium,eye,,normal,8,41565811,train
GSE309522,Eosinophils enhance granuloma-mediated control of persistent Salmonella infection,16,Mus musculus,Xenium,Xenium,lymph node,salmonellosis,normal;disease,0,41272146,train
GSE309565,Morphological and Functional Diversity of Spatially Resolved Vestibular Ganglion Neuron Cell Types,2,Mus musculus,Visium HD,Visium HD,head and neck,,normal;perturbation,2,,test
GSE309857,Microglial TDP-43 mediates myelin refinement and represses Tyrobp cryptic exon inclusion in mice [Spatial Transcriptomics],4,Mus musculus,Visium,Visium,brain,,perturbation;normal,0,42420559,train
GSE310073,Immunotolerant Oligomer Scaffolds Promote Regenerative Remodeling and Improved Muscle Structure and Function After Volumetric Muscle Loss,6,Rattus norvegicus,Visium,Visium,skeletal muscle,,perturbation,6,41796221,train
GSE310116,Mucosal vaccination transcends pathogen boundaries to protect from diverse respiratory threats,4,Mus musculus,Slide-seq,Curio Trekker,lung,,perturbation;normal,0,41712698,train
GSE310129,Spatial transcriptome sequencing of chicken and duck beaks,3,Anas platyrhynchos;Gallus gallus,Stereo-seq,Stereo-seq,head and neck,,normal,0,,train
GSE310162,Heterogeneity in B- and epithelial-cell senescence in the pathogenesis of COPD/emphysema [Xenium],22,Homo sapiens,Xenium,Xenium,lung,pulmonary emphysema,normal;disease,22,,train
GSE310351,Spatial transcriptomic profiling of human saphenous vein grafts reveals molecular remodeling and smooth muscle cell phenotypic transition during early neointima proliferation,6,Homo sapiens,Visium,Visium,blood vessel,,disease,6,41569144,train
GSE310352,In situ multi-modal characterization of pancreatic cancer reveals tumor cell identity as a defining factor of the surrounding microenvironment [Nanostring CosMx],8,Homo sapiens,CosMx,CosMx,pancreas,pancreatic ductal adenocarcinoma,disease,0,41533516,train
GSE310386,Oral bacterial dysbiosis drives autoimmune heart disease via molecular mimicry,8,Homo sapiens,Xenium,Xenium,heart,heart disorder;cardiovascular disorder,disease;not stated,1,,train
GSE310392,Cellular senescence in human liver under normal aging and cancer [Xenium],12,Mus musculus,Xenium,Xenium,liver,cancer,normal;disease,12,41576948,train
GSE310443,Single-cell Spatial Transcriptomics Reveals Hepatocyte Metabolic Reprogramming in Fontan Associated Liver Disease,2,Homo sapiens,CosMx,CosMx,liver,Fontan-associated liver disease,normal;disease,0,41734025,train
GSE310599,Spatiotemporal development of deep excitatory neuronal types within the mouse neocortex,16,Mus musculus,Xenium,Xenium,embryo (whole);brain,,normal,16,,val
GSE310610,Spatial Transcriptomics of Human Fetal Lungs,12,Homo sapiens,Visium,Visium,lung,trisomy 21,normal;disease,12,41484334,train
GSE310658,Xenium In Situ analysis of mouse skin mock-treated or treated with SspA and HDM,2,Mus musculus,Xenium,Xenium,skin,,normal;perturbation,2,,train
GSE310797,Single cell and Spatial RNA-seq in Oral Squamous Cell Carcinoma with Different Stage,3,Homo sapiens,Visium,Visium,oral cavity,oral cavity squamous cell carcinoma,disease,0,41851114,train
GSE310921,Use of Organ Transplant Solution to Preserve Skeletal Muscle for Cellular and Spatial Transcriptomic Analyses,8,Mus musculus;Homo sapiens,Visium,Visium,skeletal muscle,,normal;perturbation,8,,train
GSE311123,Spatial analysis revealed localization of osteblastogenesis-inhibitory factors in Giant Cell Tumor of Bone,1,Homo sapiens,Visium,Visium,bone,bone giant cell tumor;giant cell tumor,disease,1,41872383,val
GSE311199,Integrative spatial profiling of 3D genome organization and gene expression in complex tissue,7,Mus musculus;Homo sapiens,DBiT-seq,DBiT-seq,brain;embryo (whole);skin,melanoma,normal;disease,0,42641604,train
GSE311294,Collagen Alignment and Spatial Transcriptomics Analysis (CASTA) reveals gene programs associated with collagen alignmet in colorectal cancer,5,Homo sapiens,Visium,Visium,colon,colorectal cancer,disease,5,,train
GSE311369,A Complete Spatial Map of Mouse Retinal Ganglion Cells Reveals Density and Gene Expression Specializations [RGC_CrossSection],1,Mus musculus,Xenium,Xenium,eye,,normal,1,41452983,train
GSE311383,High-resolution spatial transcriptomics of human liver with VisiumHD,3,Homo sapiens,Visium HD,Visium HD,liver,,normal,3,42342734,train
GSE311609,Single-Cell Spatial Transcriptomics of Archival Human Lung and Breast Tumor FFPE Samples,41,Homo sapiens,Xenium,Xenium,lung;breast,non-small cell lung carcinoma;adenocarcinoma;acinar cell carcinoma;breast cancer;carcinoma;breast lobular carcinoma;apocrine adenocarcinoma,disease,41,42062553,val
GSE311636,New taxonomy based on individual patient-reported response trajectories defines ulcerative colitis endotypes and reveals vascular inflammation as a mechanism for vedolizumab nonresponse [cosMx],2,Homo sapiens,CosMx,CosMx,rectum,ulcerative colitis,disease,0,,val
GSE311681,An immunobiliary single-cell atlas resolves crosstalk between type 2 conventional dendritic cells and γδ T cells in cholangitis,1,Mus musculus,Xenium,Xenium,liver,cholangitis,disease,1,41963321,train
GSE311717,Lipid-Associated Macrophage Polarization Drives Chronic Xenograft Fibrosis via APOE-SDC2 Signaling,15,Macaca fascicularis,Visium,Visium,kidney,,disease;perturbation,15,,train
GSE311781,"Focal white matter lesions drive grey matter inflammation, neuronal dysfunction and synapse loss",10,Rattus norvegicus,DBiT-seq,DBiT-seq,brain,,normal;disease,0,42020752,train
GSE311783,DeCAF redefines fibroblast states uncovering multidimensional tumor-stroma relationships driving clinical tumor progression and immunotherapy response [Spatial Transcriptomics],7,Homo sapiens,Visium,Visium,pancreas,pancreatic ductal adenocarcinoma,disease,7,41707654,train
GSE311892,The local cellular response to Human Papillomavirus focuses on basal layer restoration as visualized in situ by specific cellular neighborhoods near infected cells,36,Homo sapiens,CosMx,CosMx,other,,disease;normal;not stated,0,41438752,train
GSE311909,A targetable developmental program co-regulates angiogenesis and immune evasion [Spatial Transcriptomics],2,Homo sapiens,Visium,Visium,skin,melanoma,disease,2,41631877,val
GSE312053,Bridge to transplant using a flow-adaptive extracorporeal total artificial lung system following bilateral pneumonectomy,9,Homo sapiens,Visium HD,Visium HD,lung,acute respiratory distress syndrome,perturbation;disease,9,41619723,train
GSE312129,"Single-nuclei multiome and spatial analyses of early, untreated SSc skin identify a proinflammatory vascular niche of macrophage-fibroblast signaling",10,Homo sapiens,Visium,Visium,skin,systemic sclerosis,disease,10,41411065,train
GSE312168,Spatially resolved integrative analysis of transcriptomic and metabolomic changes in tissue injury studies,1,Rattus norvegicus,Visium,Visium,lung,,perturbation,1,41501078,train
GSE312204,Clonal biases dictate availability of colonic cancer driver mutations for transformation,20,Homo sapiens,Visium,Visium,colon,,normal,20,41991531,test
GSE312281,MicroRNA-200 family inhibits sebaceous gland fate specification by disrupting SOX9 function [Spatial Transcriptomics],1,Mus musculus,Visium,Visium,skin,,perturbation,1,,train
GSE312327,Spatially-guided metabolomics profiling of heterogeneous human tumor tissues,2,Homo sapiens,Visium,Visium,liver,neoplasm,disease,2,41922830,train
GSE312358,Multi-omics Analysis of Immune Cells Induced by Artificial Adjuvant Vector Cell (aAVC) Therapy in HPV-Positive Tumor-Bearing Mice [Spatial Transcriptomics],2,Mus musculus,Xenium,Xenium,other,neoplasm,disease,2,42545372,train
GSE312415,Performance differences in spatial transcriptomics platforms identify Treg biology in human inflammatory bowel disease [CosMx],60,Homo sapiens,CosMx,CosMx,small intestine;rectum;colon,inflammatory bowel disease;intestinal disorder;immune system disorder,disease;normal,0,42049732,train
GSE312420,Performance differences in spatial transcriptomics platforms identify Treg biology in human inflammatory bowel disease [Xenium],32,Homo sapiens,Xenium,Xenium,small intestine;rectum,inflammatory bowel disease;intestinal disorder;immune system disorder,disease;normal,32,42049732,train
GSE312493,early neurogenic inflammation requires stepwise DC aggregation for optimal induction of immune response,18,Mus musculus,Xenium,Xenium,skin,,perturbation;normal,0,42580342,test
GSE312698,NanoString CosMx SMI (human) on ten human MASLD samples,4,Homo sapiens,CosMx,CosMx,liver,metabolic dysfunction-associated steatotic liver disease,disease,0,42151416,train
GSE312910,Lesion-remote astrocytes govern microglia-mediated white matter repair IV,16,Mus musculus,Visium,Visium,spinal cord,,perturbation;disease,16,41407858,train
GSE312932,"Spatial analyses of early, untreated SSc skin identify a proinflammatory vascular niche of macrophage-fibroblast signaling",10,Homo sapiens,Xenium,Xenium,skin,systemic sclerosis,disease,10,41411065,train
GSE313006,Spatial transcriptomic profiling of human lung tissue in chronic obstructive pulmonary disease (COPD) [Xenium],4,Homo sapiens,Xenium,Xenium,lung,chronic obstructive pulmonary disease,disease,4,41578022;42395348,train
GSE313081,The Dichotomy of Tumor Control by Recruited and Resident Tumor-Associated Macrophages,4,Mus musculus,Xenium,Xenium,lung,lung neoplasm;cancer;melanoma;adenocarcinoma,disease,4,,train
GSE313338,"Xenium spatial transcriptomics of stage 28 embryos and regenerating 3 cm axolotl tails (3, 7, 10, 14 dpa) including mature unamputated tails",23,Ambystoma mexicanum,Xenium,Xenium,skeletal muscle;embryo (whole),,perturbation;normal,23,,train
GSE313353,Intestinal BMP SMADs impart the mid-villus pattern via direct targeting of villus zonation genes and by controlling a transcription factor hierarchy [Spatial Transcriptomics],1,Mus musculus,Visium HD,Visium HD,small intestine,,perturbation,1,,train
GSE313407,Adult Mouse Controlled Cortical Impact Visium Spatial Transcriptomics,34,Mus musculus,Visium,Visium,brain,,disease;perturbation;normal,34,41250842,train
GSE313471,Identification of a long-term surviving human mesenchymal stromal cell subpopulation upon intradermal injection in immunodeficient mice,7,Homo sapiens,Visium,Visium,bone marrow,,normal,7,42365332,train
GSE313530,Spatial transcriptomics dataset of non-human primates,20,Macaca fascicularis;Macaca mulatta;Papio anubis,Visium,Visium,peripheral nerve,,normal;not stated,20,42146464,train
GSE313636,Spatial transcriptomic analysis of Naive or Yersinia pseudotuberculosis infected ileum reveals novel enterocyte transcriptional state,4,Mus musculus,Xenium,Xenium,small intestine,Yersinia pseudotuberculosis infectious disease,normal;disease,4,,test
GSE313662,Neoadjuvant modified FOLFIRINOX plus nivolumab in borderline-resectable pancreatic ductal adenocarcinoma: a pilot phase 1 trial,6,Homo sapiens,Xenium,Xenium,pancreas,pancreatic ductal adenocarcinoma,disease,6,41620440,train
GSE313694,Spatial transcriptomic profiling (Visium) of meningioma,42,Homo sapiens,Visium,Visium,meninges,meningioma,disease,42,41663806,train
GSE313700,Activated Interferon Signaling Suppresses Age-Dependent Liver Cancer [CosMx_Stat1KO],50,Mus musculus,CosMx,CosMx,liver,,perturbation,50,,train
GSE313704,Activated Interferon Signaling Suppresses Age-Dependent Liver Cancer [MERFISH],10,Mus musculus,MERFISH/MERSCOPE,MERFISH,liver,liver cancer,normal;disease;perturbation,0,,train
GSE313808,"High resolution mapping of human skin chronic wound tissues biofilm infected using integrated single-cell, spatial and in situ analysis [Xenium]",2,Homo sapiens,Xenium,Xenium,skin,,disease,2,,val
GSE313828,Spatial transcriptomics of MRGPRX4-driven melanoma,3,Mus musculus,Visium,Visium,skin,melanoma,disease,3,,train
GSE313858,Spatial transcriptomic data from longitudinal tumor samples from one patient undergoing neoadjuvant BO-112 and hypofractionated radiation therapy in soft tissue carcoma,3,Homo sapiens,Visium HD,Visium HD,other;unknown,neoplasm,disease,3,,train
GSE313918,Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis [Visium spatial transcriptomics],246,Homo sapiens,Visium,Visium,brain,amyotrophic lateral sclerosis,normal;disease,246,42551425,test
GSE313919,Complex Human Hair Bearing Skin Organoids Reveal Cell-Type Specific Susceptibility and Innate Immune Responses to Herpes Simplex Virus 1,4,Homo sapiens,Xenium,Xenium,skin,infectious disease,disease;normal,4,,train
GSE314035,Protective efficacy of AAV-expressed bNAbs co-delivered with PD-L1,2,Macaca mulatta,Visium HD,Visium HD,skeletal muscle,,perturbation,2,42282848,train
GSE314260,Single-cell and spatial transcriptomics of A-P and D-V patterned human trunk embryoid model (hTEM),4,Homo sapiens,Visium HD,Visium HD,other,,normal,0,,train
GSE314325,Inflammatory Monocytes Constrain YAP-Induced Cell Proliferation [MERFISH],7,Mus musculus,MERFISH/MERSCOPE,MERFISH,liver,,normal;perturbation,0,42341114,test
GSE314531,High-Resolution Spatial Transcriptomics of Irradiated Mouse Submandibular Gland  Treated with Ep-FH,9,Mus musculus,Xenium,Xenium,other,,perturbation,9,,train
GSE314851,Targeting Modulated Vascular Smooth Muscle Cells in Atherosclerosis via FAP-Directed Immunotherapy [Visium],16,Homo sapiens,Visium,Visium,blood vessel,atherosclerosis,disease,16,41610194,train
GSE314910,Spatial transcriptomic signatures of cardiac sarcoidosis,12,Homo sapiens,Visium,Visium,heart,cardiac sarcoidosis,disease,12,,train
GSE315151,A Spatiotemporal Cell Atlas of the Developing Rat Tooth Germ Reveals Iron-Deficiency Induced Ameloblast Dysregulation,2,Rattus norvegicus,Stereo-seq,Stereo-seq,oral cavity,iron deficiency anemia;deficiency anemia,disease;normal,0,,train
GSE315233,A Single-Cell Bioprinting Approach with Subcellular Resolution to Reconstruct Native Cellular Microenvironments and Interrogate Spatial Biology,2,Homo sapiens,Visium HD,Visium HD,other,,normal,2,42281981,train
GSE315243,Oncogenic and tumor-suppressive forces converge on a progenitor-orchestrated niche to shape early tumorigenesis,33,Mus musculus,Xenium,Xenium,pancreas,neoplasm;neoplastic disease or syndrome,normal;disease,33,41990751,train
GSE315246,Targeting Modulated Vascular Smooth Muscle Cells in Atherosclerosis via FAP-Directed Immunotherapy [Xenium in situ],17,Homo sapiens,Xenium,Xenium,blood vessel,atherosclerosis,disease,17,41610194,train
GSE315295,Distinct nociceptor roles in inflammation and itch revealed by subset-specific transcriptomic adaptation,18,Mus musculus,Xenium,Xenium,skin,,normal;perturbation;disease,18,41990747,train
GSE315408,Spatial and single-nucleus multi-omics profiling reveals heterogeneous endothelial cell overabundance in endocardial fibroelastosis [MERFISH],5,Homo sapiens,MERFISH/MERSCOPE,MERSCOPE,heart,endocardial fibroelastosis,disease;normal,0,,train
GSE315411,Fishing with Two Lines: A Hybrid Approach to Spatial Transcriptomic Discovery,5,Homo sapiens,Xenium,Xenium,lung,,not stated,5,41542551;42509025,train
GSE315416,A High-Resolution Stereo-seq Spatial Transcriptomic Dataset of the Bovine Liver,2,Bos taurus,Stereo-seq,Stereo-seq,liver,,normal,0,42737743,train
GSE315435,Rhythmic nephron formation in the developing kidney,11,Mus musculus;Homo sapiens,Xenium,Xenium,kidney,,normal,11,,train
GSE315482,Single-Cell Multi-omics Profiling of Mouse Hepatic Immune Microenvironment Reveals Neutrophil-Kupffer Cell Crosstalk via Thrombospondin-1/CD36 after Surgical Stress,4,Mus musculus,Visium,Visium,liver,ischemia reperfusion injury,perturbation;disease,4,,train
GSE315487,CD73 inhibition overcomes adaptive immune resistance to PARP inhibition in models of prostate cancer,4,Mus musculus,Visium,Visium,prostate;other,prostate cancer,disease,0,,train
GSE315553,Spatial Transcriptomics Data from Human Choroid Plexus,4,Homo sapiens,Slide-seq,Slide-seq,brain,,normal;not stated,0,41648589,val
GSE315907,p53 maintains healthy aging,196,Mus musculus,CosMx,CosMx,liver,,perturbation;normal,196,,train
GSE316346,TGFβ1 and Oncostatin M promotes the organization of two distinct stromal niches controlling different EMT states [Xenium],2,Mus musculus,Xenium,Xenium,skin,mesenchymal cell neoplasm,disease,2,,train
GSE316387,Xenium Analysis of Melanoma FFPE,15,Homo sapiens,Xenium,Xenium,skin,melanoma;neurofibromatosis type 1,disease,15,,train
GSE316390,Single Cell and Spatial Transcriptomics Identify Novel Immune-Stromal Interactions in Cardiac Allograft Vasculopathy,4,Homo sapiens,Visium,Visium,blood vessel,,disease,4,,train
GSE316618,Clonal memory of colitis accumulates and promotes tumor growth [Visium],2,Mus musculus,Visium HD,Visium HD,colon,colon adenoma;colitis,disease,2,41882356,train
GSE316662,Spatial Transcriptomic Mapping of Postnatal Mouse Uterine Development,8,Mus musculus,Xenium,Xenium,uterus,,normal,8,42406946,train
GSE316760,Spatial transcriptomics of primary cutaneous melanoma,2,Homo sapiens,Visium,Visium,skin,cutaneous melanoma,disease,2,,val
GSE316789,A long-read-compatible spatial barcoding system: enables isoform-resolved spatial heterogeneity at near-single-cell scale.,4,Solanum lycopersicum;Mus musculus,Other,not named in GEO,plant;embryo (whole),,perturbation;normal,0,,train
GSE316800,Stretching inhibits tumor growth in MMTV-PYMT via a direct mechanical effect,1,Mus musculus,Xenium,Xenium,breast,neoplasm,disease,1,,train
GSE316917,Mapping the spatial architecture of glioblastoma from core to edge delineates niche-specific tumor cell states and intercellular interactions,9,Homo sapiens,Xenium,Xenium,brain,IDH-wildtype glioblastoma;brain neoplasm,disease,9,,train
GSE317062,"Single-nucleus and Spatial Transcriptomics Reveal Intestinal Cellular Heterogeneity, Differentiation, and Cell Communication Mechanisms in SAP-induced Intestinal Injury [Spatial Transcriptomics]",4,Rattus norvegicus,Stereo-seq,Stereo-seq,small intestine,,normal;disease,0,41694378,train
GSE317119,A generative AI-designed vascular liner prevents restenosis,2,Oryctolagus cuniculus,Stereo-seq,Stereo-seq,blood vessel,,perturbation,0,,train
GSE317226,HIF regulatory network reflects kidney disease progression in diabetes and reversal with SGLT2 inhibition,4,Homo sapiens,Visium HD,Visium HD,kidney,kidney disorder;type 2 diabetes mellitus,disease,4,42009641,val
GSE317297,Multicellular origins of ovarian inflammaging [Spatial Transcriptomics],2,Mus musculus,Slide-seq,Slide-seq,ovary,,normal,0,,train
GSE317379,spaTransfer: transfer learning for single-cell and spatial  transcriptomics data using non-negative matrix factorization,2,Homo sapiens,Xenium,Xenium,brain,,normal,2,,val
GSE317381,spaTransfer: transfer learning for single-cell and spatial transcriptomics data using non-negative matrix factorization [DG],4,Homo sapiens,Xenium,Xenium,brain,,normal,4,,train
GSE317606,A Phase II Trial of Pembrolizumab plus Granulocyte Macrophage Colony Stimulating Factor in Advanced Biliary Cancer,12,Homo sapiens,Visium,Visium,other;unknown;liver,biliary tract cancer,disease,12,,train
GSE317755,A spatial transcriptomics comparison of the adult versus metamorphosed axolotl brain,6,Ambystoma mexicanum,Stereo-seq,Stereo-seq,brain,,normal,0,,test
GSE317987,Spatial mapping of Ethiopian cutaneous leishmaniasis lesions reveals patient-defined immune signatures,10,Homo sapiens,Visium,Visium,skin,cutaneous leishmaniasis,normal;disease,10,42553130,train
GSE318039,Spatial Transcriptomics Reveals Compartment-Specific Cytotoxic T cells Crosstalk with AT2 and Goblet cells in Advanced COPD,8,Homo sapiens,Visium,Visium,lung,chronic obstructive pulmonary disease,normal;disease,8,42351239,train
GSE318202,"Single-cell multiomic approaches define a gradual, spatially-regulated epigenetic and transcriptional transition from embryonic to adult neural stem cells [Xenium]",10,Mus musculus,Xenium,Xenium,brain,,normal,10,42314674,train
GSE318238,Spatially resolved gene expression and tumour-microenvironment interactions across malignant transformation in IDH-mutant glioma,3,Homo sapiens,Visium,Visium,brain,astrocytoma (excluding glioblastoma),disease,3,,train
GSE318415,Transcriptomic Landscape of Microglia in Mouse Models of Social Dysfunction and Oxytocin-Mediated Recovery,3,Mus musculus,Xenium,Xenium,brain,,normal;perturbation,3,,test
GSE318507,Evaluating exon skipping in the central nervous system in Duchenne muscular dystrophy using spatial transcriptomics,4,Mus musculus,Xenium,Xenium,brain,neuromuscular disease,normal;disease;not stated,4,42542656,train
GSE318532,Targeting the lipid metabolism proteins FASN and GPAM in alveolar type II cells decreases lung metastasis,2,Mus musculus,Visium,Visium,lung,neoplasm,normal;disease,2,41778850,train
GSE318562,Mapping the spatial architecture of glioblastoma from core to edge delineates niche-specific tumor cell states and intercellular interactions [Spatial Transcriptomics],22,Homo sapiens,Visium,Visium,brain,IDH-wildtype glioblastoma;brain neoplasm,disease,22,,train
GSE318590,Spatial transcriptomics data of the wild-type and App NL-G-F mouse posterior cortex,8,Mus musculus,CosMx,CosMx,brain,Alzheimer disease,normal;disease,8,41794826,train
GSE318726,Phenylalanine Reprograms TLS Maturation and Plasma cell differentiation in MASH-HCC [Spatial Transcriptomics],8,Mus musculus,Visium,Visium,liver,metabolic dysfunction-associated steatohepatitis;hepatocellular carcinoma,disease,8,,train
GSE318797,CosMX spatial transcriptomics of mouse subcutaneous EO771 tumors to study synergistic effects of NEDD8 depletion and anti-PD-1 therapy,2,Mus musculus,CosMx,CosMx,other,neoplasm,disease,0,42330494,train
GSE318867,Vascular STING activation facilitates NK cell anti-tumor immunity in small cell lung cancer [Spatial_Transcriptome],3,Homo sapiens,Visium,Visium,lung,small cell lung carcinoma,disease,3,41791380,train
GSE319123,Spatially Resolved Panoramic in vivo CRISPR Screen via Perturb-DBiT,1,Mus musculus,Xenium,Xenium,lung,,perturbation,1,,train
GSE319236,Spatially resolved maternal and fetal cell contributions to severe Preeclampsia,64,Homo sapiens,Visium,Visium,uterus;placenta,severe pre-eclampsia;preeclampsia,disease,0,,test
GSE319277,Spatially Resolved Panoramic in vivo CRISPR Screen via Perturb-DBiT [Spatial Transcriptomics],7,Mus musculus,DBiT-seq,DBiT-seq,lung;liver,,perturbation;disease,0,,train
GSE319536,A Spatial Atlas of Muscle-Invasive Bladder Cancer Reveals Lineage-Specific Vulnerabilities and Immune Architecture,22,Homo sapiens,Visium,Visium,bladder,urinary bladder carcinoma,disease,22,,train
GSE319617,Inference of cell-cell communication in human fetal liver from high definition spatial profiling using Renoir,2,Homo sapiens,Visium HD,Visium HD,liver,,normal,2,42086556,train
GSE319706,Spatial polarization of endothelial ICAM-1 drives CD8⁺ T cell exclusion in melanoma [Xenium],9,Mus musculus,Xenium,Xenium,skin;other,melanoma,disease,9,,train
GSE319755,Cytotoxic CD39+ tumor-associated NK cells respond to NKG2A blockade in lung cancer (10x Xenium),3,Homo sapiens,Xenium,Xenium,lung,lung adenocarcinoma;non-small cell lung carcinoma,disease,3,42247486,train
GSE319763,Inflammatory immune modulators of AML lung infiltration and respiratory failure,3,Homo sapiens,Xenium,Xenium,lung,acute myeloid leukemia;lung disorder,normal;disease,3,,train
GSE319771,Integrative Molecular Analyses of Inflammatory and Autoimmune Signals in Cardiac Sarcoidosis [Xenium],18,Homo sapiens,Xenium,Xenium,heart,cardiac sarcoidosis,disease,18,42206386,train
GSE319842,Spatial transcriptomic profiling of TOP2B-driven anthracycline-induced cardiotoxicity in mouse hearts,2,Mus musculus,Visium,Visium,heart,,perturbation,2,42102394,train
GSE319949,Logistic regression for estimating functional effects with spatial transcriptomics,4,Mus musculus,MERFISH/MERSCOPE,MERSCOPE,brain,,normal,0,42137981,train
GSE320041,High-resolution and noninvasive profiling of the tumor microenvironment with spatial ecotypes [Visium],17,Homo sapiens,Visium;Visium HD,Visium;Visium HD,skin;unknown,metastatic melanoma,disease,17,42092150,train
GSE320142,NKG2A inhibition promotes NK cell-CD8+ T cell interactions in support of improved anticancer immunity in ovarian carcinoma,4,Homo sapiens,Xenium,Xenium,lung;ovary,non-small cell lung carcinoma;ovarian carcinoma,disease,4,41998001,train
GSE320372,Spatial transcriptomics analysis of dual-pathway spots,5,Mus musculus,Visium,Visium,liver,fish eye disease,normal;perturbation;disease,5,41890086,train
GSE320403,The role of retinoic acid receptor signaling in liver cells during Alcohol-associated liver disease resolution by spatial transcriptomics analysis,1,Mus musculus,Xenium,Xenium,liver,liver disorder,disease,1,,train
GSE320442,Blocking the Gut–Liver IgA Axis Attenuates Macrophage-Mediated Inflammation and Injury in Alcohol-Associated Liver Disease [Spatial Transcriptomics],15,Mus musculus,Visium,Visium,small intestine;liver,liver disorder;hepatobiliary disorder,normal;disease,15,,test
GSE320484,Genetic and pharmacologic disruption of N-Myc suppresses basal cell carcinoma,4,Mus musculus,Xenium,Xenium,skin,basal cell carcinoma;carcinoma,disease,4,,train
GSE320505,Single cell and spatial sequencing analysis of cancer associated fibroblasts in the brain metastasis tumor microenvironment,4,Homo sapiens,Visium,Visium,brain,cancer,disease,4,41917370,test
GSE321832,Spatial transcriptomics of squamous cell carcinoma from different tissues,5,Homo sapiens,Visium,Visium,head and neck;oral cavity;lung;skin,squamous cell carcinoma,disease,5,42045479,train
GSE322553,Dendritic cell-mediated antigen presentation regulates tertiary lymphoid structure development in cancer.,7,Homo sapiens,Visium,Visium,colon;liver;lung,colorectal carcinoma;hepatocellular carcinoma;non-small cell lung carcinoma,disease,7,,train
GSE322640,Trabectedin and low-dose irinotecan to target EWS::FLI1 in Ewing sarcoma: a phase 1/2 trial,10,Homo sapiens,Visium HD,Visium HD,unknown,Ewing sarcoma,disease,10,41991689,train
GSE322883,Spatial Transcriptomics Analysis of inflamed versus healthy Dental Pulps,4,Homo sapiens,Visium,Visium,oral cavity,pulpitis,normal;disease,4,,train
GSE322974,Spatial Transcriptomic Analysis of a Human Bone Marrow Clot Biopsy Using Xenium 5K,1,Homo sapiens,Xenium,Xenium,bone marrow,,normal,1,41889971;42605801,train
GSE323357,Single-cell and Spatial Transcriptomic Profiling of the Bone Metastatic Microenvironment,4,Mus musculus,Visium,Visium,bone,,disease,4,42108258,test
GSE324075,Integrated spatial transcriptomics (Stereo-seq) and bulk RNA-seq of cardiac sonogenetics in rodent heart tissue across time points [Stereo-seq],1,Mus musculus,Stereo-seq,Stereo-seq,heart,,perturbation,0,,val
GSE324128,Molecularly distinct subtypes of Lhx6-positive neurons of the zona incerta differentially regulate sleep pressure and recovery sleep,1,Mus musculus,Xenium,Xenium,brain,,normal,1,,train
GSE324158,Single-cell multi-omic and spatial landscape of primate pineal gland reveals circadian and melatonin regulatory architecture,1,Macaca fascicularis,BMK S1000,BMKMANU S3000,brain,,normal,0,,train
GSE324268,Xenium single cell spatial transcriptomics from patient-derived glioblastoma organoid cultured on brain slice and a primary glioblastoma sample,2,Homo sapiens,Xenium,Xenium,brain,glioblastoma,disease,2,41951573,train
GSE324427,Myasthenia thymus reprograms class switched B cells into BAFF dependent survivors,2,Homo sapiens,Visium HD,Visium HD,thymus,,normal;disease,0,42585334,val
GSE324535,CD36-mediated lipid-accumulation in reactive microglia drives retinal degeneration through NLRP3-IL-1β pathway,1,Mus musculus,Stereo-seq,Stereo-seq,eye,retinal degeneration,disease,0,,train
GSE324601,Spatial transcriptomic analysis of human iPSC-derived hemanoids at day 16 and day 28,2,Homo sapiens,Visium,Visium,other,,normal,2,,train
GSE324903,Early lineage divergence segregates sensory-related and motor-associative identities in the thalamus [Spatial Transcriptomics E12],1,Mus musculus,Slide-seq,Slide-seq,brain,,normal,0,,train
GSE324934,Personalizing the treatment of head and neck cancer in vitro: The 3D-OTC model,9,Homo sapiens,Xenium,Xenium,airway;head and neck,head and neck squamous cell carcinoma;malignant tumor of neck,disease,9,42035072,val
GSE325196,Single Nuclei and Spatial Transcriptomic Datasets in Brain Metastases,12,Homo sapiens,Visium,Visium,brain,melanoma;sarcoma;non-small cell lung carcinoma,disease,12,,test
GSE325253,Xenium spatial transcriptomic profiling of mouse lung following pharmacologic inhibition of lactate transport during fibrotic remodeling,8,Mus musculus,Xenium,Xenium,lung,,normal;disease,8,42090478,train
GSE325371,SlCAX3 drives the formation of crystal idioblasts for tomato ion compartmentalization under salt stress,4,Solanum lycopersicum,BMK S1000,BMKMANU S1000,plant,,perturbation,0,,train
GSE325489,Spatiomolecular mapping reveals anatomical organization of heterogeneous cell types in the human nucleus accumbens,4,Homo sapiens,Xenium,Xenium,brain,,normal,4,42385698,train
GSE325554,Accelerated cerebromicrovascular senescence contributes to cognitive decline in a mouse model of paclitaxel (Taxol)-induced chemobrain [Spatial Transcriptomics],8,Mus musculus,Visium,Visium,brain,,normal;perturbation,8,37243381,train
GSE325587,Spatial transcriptomics identifies IL-32 as a lipid droplet-associated cytokine linked to tubular injury in human diabetic kidney disease,8,Homo sapiens,CosMx,CosMx,kidney,diabetic kidney disease;diabetes mellitus;kidney cortex disease,normal;disease,0,41324332;41653322,train
GSE325706,GPNMB as a viable CAR Target for MITF pathognomonic fusion-driven cancers: A first-in-person GCAR1 Trial [ASPS-02_VisiumHD],2,Homo sapiens,Visium HD,Visium HD,lung,,disease,2,,train
GSE325755,Spatial membrane lipid remodeling encodes epithelial lineage and state in human colon cancer,11,Homo sapiens,Visium,Visium,colon;peritoneum,malignant colon neoplasm,disease,11,,train
GSE325769,Multiomics immune profiling of a patient-relevant orthotopic lung cancer model using SEPARATE-Seq [MERSCOPE],2,Mus musculus,MERFISH/MERSCOPE,MERSCOPE,lung,lung cancer,disease,0,42026061,train
GSE325797,Circuit Organization and Transcriptomic Heterogeneity of Sympathetic Circuits Innervating Cranial Structures [MERFISH],2,Mus musculus,MERFISH/MERSCOPE,MERSCOPE,other,,normal,0,,train
GSE325817,Stroke drives glioma progression through remodeling of the tumor microenvironment [Spatial Transcriptomics],1,Mus musculus,Visium,Visium,brain,stroke disorder;glioma,disease,1,,train
GSE325846,Spatial transcriptomic analysis of rat gut tissue reveals transcriptional changes associated with high-fat diet and tirzepatide treatment,4,Rattus norvegicus,Visium,Visium,small intestine,,normal;perturbation,0,,train
GSE325861,Macrophage signaling associates with fibrogenic program activation in periductal fibroblasts in pediatric primary sclerosing cholangitis.,2,Homo sapiens,MERFISH/MERSCOPE,MERSCOPE,liver,primary sclerosing cholangitis;autoimmune pancreatitis;inflammatory bowel disease,disease,0,,test
GSE325911,Type-I Interferon drives T-cell responses to amyloid-beta in the central nervous system,37,Mus musculus;Homo sapiens,Molecular Cartography,Molecular Cartography,brain,amyloidosis;Alzheimer disease,disease;normal,0,,train
GSE325935,Single Nuclei and Spatial Transcriptomic Datasets in Brain Metastases [Xenium],4,Homo sapiens,Xenium,Xenium,brain,,disease,4,,train
GSE325991,High-resolution spatial transcriptomics of human adrenal neoplasms,1,Homo sapiens,Visium HD,Visium HD,adrenal gland,adrenal gland neoplasm,disease,0,,train
GSE325996,Interleukin-34 induced Arg1+ macrophages play a key role in breast cancer brain metastasis,2,Mus musculus,Visium,Visium,brain,cerebellar neoplasm;breast cancer,disease,2,42166785,train
GSE326094,Aberrant laminin signaling drives melanocyte dedifferentiation and unveils a tractable therapeutic target in vitiligo,1,Homo sapiens,Visium HD,Visium HD,skin,vitiligo,disease,1,41997929,train
GSE326204,Wnt-dependent ontogeny of acellular cementum-forming cementoblasts on the tooth root surface,1,Mus musculus,Visium HD,Visium HD,oral cavity,,normal,1,42129164,test
GSE326226,A Xenium Spatial Atlas of Muscle-Invasive Bladder Cancer Reveals Lineage-Specific Vulnerabilities,5,Homo sapiens,Xenium,Xenium,bladder,cancer,disease,5,,train
GSE326496,Integrative single cell RNA and spatial profiling identify mechanisms of neonatal brain hemorrhage pathophysiology and repair [Xenium],2,Mus musculus,Xenium,Xenium,brain,,normal;perturbation,0,41353666,train
GSE326553,"Spatial transcriptomics reveals distinct cell type dynamics following opioid dependence in female mice with the common human mu-opioid receptor variant, Oprm1 A118G",4,Mus musculus,CosMx,CosMx,brain,opiate dependence;drug dependence,disease,0,42637754,val
GSE326636,Spatial transcriptomic analysis of mouse liver in a high-fat diet model with kimchi supplementation,4,Mus musculus,Visium,Visium,liver,,perturbation;normal,4,,train
GSE326639,"Ubiquitin-like proteins NEDD8 and SUMO2 control epithelial homeostasis, regeneration, and inflammation [Xenium]",10,Mus musculus,Xenium,Xenium,skin,,perturbation,10,42348677,train
GSE326660,Reprogramming engineered autologous T cells to overcome resistance in patients with Merkel cell carcinoma [Xenium],6,Homo sapiens,Xenium,Xenium,skin;lymph node,cutaneous neuroendocrine carcinoma,disease,6,42715345,test
GSE326743,"Identity, ontogeny, and age-related changes in splenic white pulp macrophages in mouse and human spleen [human_spleen_Xenium]",7,Homo sapiens,Xenium,Xenium,spleen,,normal,7,,train
GSE326837,Spatial transcriptomics reveals immune-stromal crosstalk within the synovium of patients with juvenile idiopathic arthritis,9,Homo sapiens,Xenium,Xenium,other,juvenile idiopathic arthritis,disease,9,41269758,train
GSE326903,Polarized neocortical organoids with areal signatures upon the formation of anterior and posterior organizers. [Spatial Transcriptomics],3,Homo sapiens,Visium,Visium,brain,,normal,3,42624107,test
GSE326904,Cardiac tertiary immune niches drive immune activation in immune checkpoint inhibitor myocarditis [CosMx],2,Mus musculus,CosMx,CosMx,heart,myocarditis,disease,0,42647623,train
GSE327056,Spatial transcriptomic profiling of human pancreatic ductal adenocarcinoma  using 10x Genomics Visium platform,4,Homo sapiens,Visium,Visium,pancreas,pancreatic ductal adenocarcinoma,disease;normal,4,42100437,test
GSE327095,C1q and immunoglobulins mediate activity-dependent synapse loss in the adult brain.,2,Mus musculus,Visium,Visium,brain,,normal,0,42424464,train
GSE327129,Subcellular mRNA localization patterns across tissues resolved with spatial transcriptomics,2,Mus musculus,Visium HD,Visium HD,liver,,normal,2,42009650,train
GSE327147,MERFISH data on seven mouse brain with Abeta pathology,7,Mus musculus,MERFISH/MERSCOPE,MERSCOPE,brain,amyloidosis;Alzheimer disease,disease,0,,val
GSE327192,Dendritic cell-mediated antigen presentation regulates tertiary lymphoid structure development in cancer [MERFISH],15,Homo sapiens,MERFISH/MERSCOPE,MERSCOPE,liver;lung,hepatocellular carcinoma;non-small cell lung carcinoma,disease,0,,train
GSE327284,"Heterogenous microglial reactivity contrasts with stable vascular transcriptional programs in mouse models of Alzheimer’s, CADASIL, and Traumatic Brain Injury (Spatial data)",2,Mus musculus,Visium HD,Visium HD,brain,traumatic brain injury;vascular disorder,disease,2,42463666,train
GSE327347,Targeted spatial transcriptomic profiling of pleural mesothelioma using 10x Genomics Xenium,7,Homo sapiens,Xenium,Xenium,lung;other,pleural mesothelioma,disease,7,41319863;42138664,test
GSE327406,"Spatially resolved, integrated single-cell multiomic profiling of the transcriptome and epigenomic targets in frozen tissue sections",1,Mus musculus,Slide-seq,Curio Trekker,brain,,normal,0,42371963,train
GSE327441,Cellular Signatures of Melanocortin Pathway Genes Across the Locus Coeruleus [Spatial Transcriptomics],4,Homo sapiens,Visium,Visium,brain,,normal,4,41935248,train
GSE327581,Single-cell spatial transcriptomic profiling of 3xTg-AD mouse brains following fecal microbiota transplantation from stroke and healthy human donors,5,Mus musculus,CosMx,CosMx,brain,cerebrovascular disorder;Alzheimer disease;stroke disorder,disease,0,,train
GSE327709,Transient cell states encode positional information to direct asymmetric growth [MERFISH],9,Arabidopsis thaliana,MERFISH/MERSCOPE,MERSCOPE,plant,,perturbation,0,42239415,train
GSE327796,Spatial transcriptomic landscape of the Ciona adult brain: functional zonalisation and cellular composition in a sessile chordate brain and a novel insight into neural gland function,4,Ciona robusta,Visium,Visium,brain,,normal,4,42698976,train
GSE327879,Single-cell spatial transcriptomic analyses of severe Covid-19 lungs identifies  disease-associated spatial niches,2,Homo sapiens,CosMx,CosMx,lung,COVID-19,normal;disease,0,,train
GSE327901,A 3D Amphioxus Brain Atlas Illuminates the Blueprint of the Ancestral Chordate Brain and Highlights Unique Vertebrate Innovations,1,Branchiostoma floridae,Xenium,Xenium,brain,,normal,1,42397914,train
GSE328169,CRISP enables comparisons of image-based spatial transcriptomic segmentation quality across ten organs,1,Mus musculus,Xenium,Xenium,unknown,,not stated,0,,test
GSE328422,Spatio-temporal mapping of immune cell dynamics during human sequential lymph node metastasis,6,Homo sapiens,Xenium,Xenium,lymph node,triple-negative breast carcinoma,disease,6,,train
GSE328448,Spatiotemporal transcriptomics characterizes immune microenvironment during mouse liver aging [Spatial Transcriptomics],4,Mus musculus,Stereo-seq,Stereo-seq,liver,,normal,0,42010880,train
GSE328460,Single-cell resolution spatial transcriptomics of a mucinous tubular and spindle cell carcinoma using CosMX,1,Homo sapiens,CosMx,CosMx,unknown,carcinoma;malignant spindle cell neoplasm,disease,0,,train
GSE328481,Uncovering ectopic GC-like niches for tumor reactive lymphocyte priming in lung adenocarcinoma using Stereo-XCR-seq,11,Homo sapiens,Stereo-seq,Stereo-seq,lung,lung adenocarcinoma,disease,0,42547508,train
GSE328700,Spinal signatures of entrenched and treated neuropathic pain in male mice [Xenium],12,Mus musculus,Xenium,Xenium,spinal cord,,perturbation;normal;disease,12,42457652,train
GSE328931,Transcriptomic and lipidomic analysis of the cryptococcal lung granuloma reveals macrophage boundary programs and sphingolipid remodeling [Xenium],11,Mus musculus,Xenium,Xenium,lung,cryptococcosis,normal;disease,11,42209491,train
GSE329112,Aging disrupts spatiotemporal coordination in the cycling murine ovary,69,Mus musculus,Slide-seq,Slide-seq,ovary,,normal,0,42310395,val
GSE329229,Analysis of mouse livers fed with high cholesterol diet and alcohol by spatial transcriptomics,1,Mus musculus,Xenium,Xenium,liver,,perturbation,1,,train
GSE329415,Spatial transcriptomics of bone taken from two PRF1-/-  B16F10-injected  and one PRF1-/-  healthy control- bone tissues using Xenium,6,Mus musculus,Xenium,Xenium,bone,,disease;perturbation,6,,train
GSE329718,"Spatial resolved single-cell dissection of mouse insula cortex organization, projection and function",120,Mus musculus,MERFISH/MERSCOPE,MERFISH,brain,,normal;perturbation,0,,train
GSE330153,Transcriptomic Signatures of Hippocampal Active Place Avoidance Memory Maintenance,4,Mus musculus,Visium,Visium,brain,,perturbation;normal,4,,val
GSE330163,Human Myometrial Cell Fate under Chronic Oxidative Stress for Leiomyomagenesis,2,Homo sapiens,Visium HD,Visium HD,uterus,,not stated,0,42539031,train
GSE330224,A multi-omics characterization of the human lumbar spinal cord and motor cortex reveals non-overlapping molecular signatures in ALS,303,Homo sapiens,Visium,Visium,spinal cord;brain,amyotrophic lateral sclerosis;frontotemporal dementia,normal;disease,303,,train
GSE330686,CXCL10 contributes to female-specific pathological progression in tauopathy model mice,4,Mus musculus,Xenium,Xenium,brain,tauopathy,normal;disease,4,42557563,train
GSE330849,MERFISH spatial transcriptomic profiling of Sst+ interneurons in the postnatal mouse brain,2,Mus musculus,MERFISH/MERSCOPE,MERSCOPE,brain,,normal,0,42547805,train
GSE330886,The challenges of single cell transcriptomics on difficult human tissue: the placenta [Xenium],1,Homo sapiens,Xenium,Xenium,placenta,,normal,1,42466067,train
GSE330953,A necroptotic-to-apoptotic signaling axis underlies inflammatory bowel disease,51,Homo sapiens,Xenium,Xenium,colon;rectum;small intestine,ulcerative colitis;inflammatory bowel disease,normal;disease,26,42658927,train
GSE331133,Single-Cell and Spatial Multi-Omics Reveal Estrogen-Mediated Vaginal Wall Microenvironment Remodeling and a Perivascular Reparative Niche in Postmenopausal Pelvic Organ Prolapse,2,Homo sapiens,Visium HD,Visium HD,other,reproductive system disorder;pelvic organ prolapse,disease,2,,train
GSE331225,TRPV1–STAT3 signaling as a driver of lethal pathology during pneumococcal nose-to-brain invasion,2,Mus musculus,Visium HD,Visium HD,airway;head and neck,,perturbation,0,,train
GSE331286,Understanding the spatial and temporal regulation of the βIV-spectrin/STAT3 complex in ischemic cardiac remodeling with spatial transcriptomics.,4,Mus musculus,Visium,Visium,heart,myocardial infarction,disease,4,,train
GSE331374,Glioma-intrinsic MAPK/ERK signaling promotes immunotherapy efficacy through T cell infiltration and interferon responses,4,Homo sapiens,Visium,Visium,brain,brain glioblastoma,disease,4,42350396,train
GSE331446,Epicardial fat drives macrophage response in atrial cardiomyopathy,5,Homo sapiens,Visium,Visium,heart,heart disorder;cardiomyopathy,disease,4,,val
GSE331531,Identification and Characterization of Adrenergic and Mesenchymal Cancer Cell States in Neuroblastoma Using Spatial-Omics,7,Homo sapiens,Xenium,Xenium,other;unknown,cancer;neuroblastoma,disease,7,,train
GSE332563,Comprehensive spatial profiling of the spleen in human myelofibrosis [ST_Visium],12,Homo sapiens,Visium,Visium,spleen,myelofibrosis,normal;disease,12,,train
GSE332601,Spatial transcriptomics profiling of NDMA-induced liver injury in Mgmt-deficient mice across sex and time,4,Mus musculus,Visium,Visium,liver,,perturbation,4,,train
GSE332618,Identification and Characterization of Adrenergic and Mesenchymal Cancer Cell States in Neuroblastoma Using Spatial-Omics [Spatial Transcriptomics],15,Homo sapiens,Visium HD,Visium HD,unknown;other,cancer;neuroblastoma,disease,15,,val
GSE332731,Local control of Cre-regulated genetic modeling in vivo using wireless implantable optoelectronics [Spatial transcriptomics],2,Mus musculus,Visium HD,Visium HD,lung,,disease,2,,train
GSE332850,Xenium Spatial Transcriptomics Reveals the Mechanism of TGFBRIIDN-Armored GPC3-CAR-T Cells in Hepatocellular Carcinoma Patients,4,Homo sapiens,Xenium,Xenium,liver,hepatocellular carcinoma,disease,0,,train
GSE333244,Spatial Rewiring of Enterocyte Identity in Celiac Disease [Visium],4,Homo sapiens,Visium HD,Visium HD,small intestine,duodenal disorder;celiac disease,normal;disease,4,,train
GSE333401,Prenatal DBP Exposure Dysregulate Fetal-Placenta Spatial Transcriptomic Profiles,13,Mus musculus,Visium,Visium,placenta,,perturbation,13,,val
GSE333479,A unified spatial transcriptome profiling of ten mouse organs,21,Mus musculus,Stereo-seq,Stereo-seq,colon;brain;kidney;skin;thymus;spleen;lung;uterus;testis;ovary,,normal,0,42374103,train
GSE333529,A skin–kidney neutrophil axis links UV exposure to renal angiogenesis and tissue remodeling in healthy and lupus kidneys. [Spatial Transcriptomics],4,Homo sapiens,Visium,Visium,kidney,systemic lupus erythematosus,disease,4,42679049,train
GSE333617,Targeting JAK1/3-STAT1 signaling attenuates cytotoxic T lymphocytes activation for the treatment in Stevens-Johnson syndrome and toxic epidermal necrolysis,4,Homo sapiens,Visium,Visium,skin,Stevens-Johnson syndrome,disease;normal,4,,train
GSE333685,Vascular smooth muscle cell state trajectories mediate molecular mechanisms of coronary disease risk,1,Mus musculus,Xenium,Xenium,blood vessel,coronary artery disorder,disease,1,41844614,train
GSE333693,Rat thymic epithelium-free areas are specialized medullary niches enriched for mature thymocytes and distinct stromal subsets,1,Rattus norvegicus,Stereo-seq,Stereo-seq,thymus,,normal,0,,train
GSE333735,TGFbeta determines epithelial tissue spacing by regulating mesenchymal condensation,3,Gallus gallus,DBiT-seq,DBiT-seq,lung,,normal,0,42446999,train
GSE333737,MERFISH spatial transcriptomic profiling of extracellular matrix and vascular-associated populations in the adult human pancreas,12,Homo sapiens,MERFISH/MERSCOPE,MERSCOPE,pancreas,diabetes mellitus,normal;disease,0,,train
GSE333851,Spatial Glyco-Codes Define Human Liver Pathology and Progression,1,Homo sapiens,DBiT-seq,DBiT-seq,liver,hepatocellular carcinoma,disease,0,42465518,train
GSE334067,Paired mutation calling and spatial transcriptomics identify cellular neighborhoods associated with neoplastic outcomes in mouse colitis,32,Mus musculus,Visium,Visium,colon,colitis,disease,32,42521760,train
GSE334308,Mapping vascular plasticity in liver fibrogenesis identifies novel fibrosis-associated endothelial cells in early-stage liver disease,2,Homo sapiens,Visium HD,Visium HD,liver,liver disorder,disease,2,,train
GSE334323,Custom Probe-Based Spatial Transcriptomics Enables Microbiome Detection in FFPE Colorectal Cancer Tissue,6,Homo sapiens,Visium,Visium,colon,adenocarcinoma;colorectal carcinoma,normal;disease,6,,train
GSE334364,Spatial Transcriptomic Atlas Reveals that FOXO3-Mediated Mitochondrial Dynamics Imbalance Drives Premature Ovarian Insufficiency in Mice,1,Mus musculus,Xenium,Xenium,ovary,ovarian dysfunction,disease,1,42435003,test
GSE334433,Tissue composition shapes differential skeletal integration strategies during axolotl limb regeneration [Spatial Transcriptomics],6,Ambystoma mexicanum,Visium,Visium,other,,perturbation,6,,train
GSE334924,Matched single-cell and Visium HD spatial transcriptomics of a chronic antibody-mediated rejection kidney graft,1,Homo sapiens,Visium HD,Visium HD,kidney,,disease,1,,train
GSE334959,Cerebellar and cerebral frontal lobe alterations in pulmonary hypertension: Evidence of an inflammatory lung vascular-brain axis [Spatial Transcriptomics],13,Mus musculus,Visium,Visium,brain,pulmonary hypertension,disease;normal,13,,test
GSE335102,Spatial transcriptomic analysis of Yersinia pseudotuberculosis infected ileum reveals novel enterocyte transcriptional state and bacterial localization,1,Mus musculus,Stereo-seq,Stereo-seq,small intestine,Yersinia pseudotuberculosis infectious disease,disease,0,,train
GSE335126,10x Genomics Xenium analysis of adult and aged mouse brain control and heat stress cohorts,2,Mus musculus,Xenium,Xenium,brain,,perturbation;normal,1,,train
GSE335181,Spatial transcriptomic analysis of patient- and cell line-derived high grade serous ovarian cancer spheroids,2,Homo sapiens,Visium,Visium,other;peritoneum,ovarian cancer,disease,2,,train
GSE335211,The H3K36M oncohistone inhibits NSD2 to activate a SETD2-dependent antiviral-like immune response in KRAS-driven lung cancer,4,Mus musculus,Xenium,Xenium,lung,lung cancer,disease,4,,train
GSE335275,Mapping the spatial architecture of glioblastoma from core to edge delineates niche-specific tumor cell states and intercellular interactions [xenium_cohort3],6,Homo sapiens,Xenium,Xenium,brain,IDH-wildtype glioblastoma;brain neoplasm,disease,6,,test
GSE335345,"10X Visium spatial transcriptomics of mouse thoracic spine intervertebral disc, IVD2 (area D1)",1,Mus musculus,Visium,Visium,bone,,perturbation,0,,train
GSE335533,Epigenetic reprogramming of CD4⁺ T cell fate by maternal and early-life obesity impairs vaccine responses in the offspring [Spatial Transcriptomics],2,Mus musculus,Visium,Visium,lymph node,,perturbation,2,,train
GSE335552,An Integrated Spatial Multi-Omics Workflow for Sequential RNA and Protein Profiling in FFPE Tumor Tissue,4,Homo sapiens,Xenium,Xenium,liver,neoplasm,disease;normal,4,,train
GSE335564,A comparative brain cell atlas of Astyanax mexicanus,1,Astyanax mexicanus,Other,not named in GEO,brain,,normal,0,42395481,train
GSE335592,CAR-T-drug conjugate against solid tumor,2,Homo sapiens,DBiT-seq,DBiT-seq,lung,neoplasm,disease,0,,val
GSE335624,Initial OX40–OX40L Signaling Promotes a Skin-Resident Memory T-Cell Reservoir in Atopic Dermatitis,1,Homo sapiens,Xenium,Xenium,skin,atopic eczema;prurigo,disease,1,42638514,train
GSE335702,Pericyte KATP Channel Hyperactivity Redistributes Cortical Blood Flow in a CADASIL Mouse Model,8,Mus musculus,Visium;Visium HD,Visium;Visium HD,brain;blood vessel,"cerebral arteriopathy, autosomal dominant, with subcortical infarcts and leukoencephalopathy, type 1",disease;normal,8,42547848,train
GSE335777,Resident tissue macrophages transfer selenium transporter protein to protect pancreatic cancer from ferroptosis,1,Mus musculus,Visium,Visium,pancreas,pancreatic ductal adenocarcinoma,disease,1,,train
GSE335898,Spatial atlas of the human brain vasculature reveals specialized cell ensembles,15,Homo sapiens,Xenium,Xenium,brain,,normal,15,,train
GSE335962,Clonal Hematopoiesis Drives Fibrotic Remodeling of the Bone Marrow Microenvironment [dataset 2],6,Homo sapiens,Xenium,Xenium,bone marrow,clonal hematopoiesis,disease;normal,0,,train
GSE336196,Spatial Transcriptomic Activity Atlas of Spinal Sympathetic Neurons Delineates Neural Control of Lipolysis,10,Mus musculus,Xenium,Xenium,spinal cord,,normal;perturbation,10,,train
GSE336209,The lung environment in pulmonary Mycobacterium tuberculosis infection influences local monocyte differentiation,4,Mus musculus,Xenium,Xenium,lung,tuberculosis,disease,4,42427735,train
GSE336556,Spatial transcriptomics reveals differences in bronchus-associated lymphoid tissue composition in stable and rejecting human lung allografts,9,Homo sapiens,Xenium,Xenium,lung,,disease,9,,train
GSE336633,Spatial Transcriptomics of MHC Expression in Mauritian Cynomolgus Macaque Tissues,16,Macaca fascicularis,Visium HD,Visium HD,liver;lung;kidney;heart,,normal,0,,val
GSE336853,New taxonomy based on individual patient-reported response trajectories defines ulcerative colitis endotypes and reveals vascular inflammation as a mechanism for vedolizumab nonresponse.,8,Homo sapiens,CosMx,CosMx,rectum,ulcerative colitis,disease,0,,train
GSE336890,Spatial analysis reveals cellular microenvironments and mechanisms of inflammation and injury in acute interstitial nephritis,9,Homo sapiens,Xenium,Xenium,kidney,interstitial nephritis;nephritis,disease;normal,7,,train
GSE337131,Spatial transcriptomics of early-grade Huntington’s disease and control Caudate,2,Homo sapiens,Visium HD,Visium HD,brain,Huntington disease,disease,0,,val
GSE337270,"Xenium dataset for ""A conserved population of genetically defined striatal neurons gates opioid reward""",16,Mus musculus,Xenium,Xenium,brain,,normal,16,,train
GSE337336,Genomic and spatial transcriptomics identify fibroblast-associated microenvironment in early mycosis fungoides progression,16,Homo sapiens,CosMx,CosMx,skin,mycosis fungoides,disease,0,,val
GSE337521,"Efficacy, safety, and spatial transcriptomic rationale of orelabrutinib plus obinutuzumab in marginal zone lymphoma",2,Homo sapiens,Visium HD,Visium HD,thyroid;other,thyroid gland mucosa-associated lymphoid tissue lymphoma;MALT lymphoma,disease,2,42436125,test
GSE337537,Persistent Lung Inflammation and Fibrosis After Mouse-Adapted Omicron BA.1 Infection,2,Mus musculus,Visium,Visium,lung,infectious disease,normal;disease,2,,train
GSE337578,The spatial transcriptomics of the mouse brain 3 days after tMCAO,1,Mus musculus,Other,SeekSpace,brain,,disease,0,,train
GSE337623,GDF15 Suppresses Liver Inflammation Independently of Weight Loss through Neuroendocrine Glucocorticoid Signaling,4,Mus musculus,Visium,Visium,liver,,perturbation,4,,train
GSE337859,Exploratory Single-nucleus Multiomics of Myeloid Cell States Associated with Neoadjuvant Chemotherapy Response in Human Pancreatic Ductal Adenocarcinoma,2,Homo sapiens,Visium,Visium,pancreas,pancreatic ductal adenocarcinoma,disease,1,42735906,train
GSE337933,PTPN1/2 inhibits alveolar macrophage-mediated control of lung metastasis [CosMx SMI],1,Mus musculus,CosMx,CosMx,lymph node,,disease,0,,val
GSE338104,Iron-Catalyzed Oxidative Stress Reveals an Exposome-Related Ferroptosis-Resistant Karyomegalic Niche in BRCA1-Linked Renal Carcinogenesis,6,Rattus norvegicus,Xenium,Xenium,kidney,,normal;perturbation,6,42442115,train
GSE338249,Spatiotemporal transcriptome atlas of water lily floral organogenesis provide insight to the evolutionary origin of novel traits of angiosperms [Spatial Transcriptomics],5,Nymphaea colorata,BMK S1000,BMKMANU S1000/S3000,plant,,normal,0,,test
GSE338404,MALADAPTIVE IMMUNE-FIBROTIC AXIS DRIVES IMPAIRED LONG BONE REGENERATION UNDER MECHANICAL INSTABILITY,2,Mus musculus,Visium,Visium,bone,bone fracture,disease,2,42664332,test
GSE338506,Spatial transcriptomic profiling of human gastric cancer FFPE specimens,1,Homo sapiens,Visium,Visium,stomach,gastric cancer,disease,0,,train
GSE338525,Spatial transcriptomics supports a role for SOX-4 driven signaling throughout the disease course of biliary atresia,16,Homo sapiens,Visium,Visium,liver,liver disorder;biliary atresia;progressive familial intrahepatic cholestasis;non-neoplastic bile duct disorder;Alagille syndrome;cholestasis,disease;normal,16,42520160,train
GSE338671,A Novel Heterozygous STAT5B Loss-of-Function Variant Associated with Interleukin-17A-Responsive Systemic Juvenile Idiopathic Arthritis-like Disease,3,Homo sapiens,Xenium,Xenium,other,juvenile idiopathic arthritis,disease,3,,train
GSE339304,Multimodal spatial profiling reveals distinct myeloid-defined ENKTL subgroups and tumor-myeloid cooperativity within prognostic inflammatory niche [ENKTL_CosMx6x],1,Homo sapiens,CosMx,CosMx,unknown,extranodal nasal NK/T cell lymphoma,disease,0,,train
GSE339455,Integrated bulk and spatial transcriptomic analysis identifies progression-associated molecular signatures in biopsy-proven hypertensive nephropathy [Spatial Transcriptomics],4,Homo sapiens,Visium,Visium,kidney,hypertensive nephropathy,disease,4,,val
GSE341169,Ancient Somatosensory Circuit Architectures Employ Flexible Molecular Strategies,8,Leucoraja erinaceus,Xenium,Xenium,other,,normal,8,,train
GSE341225,Spatial analysis reveals the evolving organization of IDH-mutant glioma,12,Homo sapiens,Visium,Visium,brain,astrocytoma (excluding glioblastoma);oligodendroglioma,disease,12,,test
GSE341250,Xenium spatial transcriptomics identifies mesenchymal fibroblast expansion and conserved fibrotic ECM programs in keloid,2,Homo sapiens,Xenium,Xenium,skin,keloid,disease,2,,train
GSE341382,Spatial transcriptomics of mouse lung after tumor induction.,2,Mus musculus,Visium HD,Visium HD,lung,neoplasm,disease,2,,train
GSE341607,A Tissue Virus Microenvironment with Activated Stress Responses Underlies Durable SIV Persistence [Visium],18,Macaca mulatta,Visium,Visium,colon;small intestine,infectious disease,disease,18,42614350,train
GSE341914,Spatial transcriptomic atlas of intestinal segments from KM mice,6,Mus musculus,Stereo-seq,Stereo-seq,colon;small intestine,,normal,0,,test
GSE341918,Dual host-pathogen screening of the lung during severe influenza using spatial transcriptomics,4,Mus musculus,Slide-seq,Curio Seeker,lung,influenza,disease,0,,train
GSE341984,KDM6 Histone Demethylases Tune Pancreatic Cancer Plasticity,12,Mus musculus,Xenium,Xenium,pancreas,malignant pancreatic neoplasm,disease,12,,train
GSE342202,nf_xpatial: A Reproducible Framework for Standardized Preprocessing and Clustering of Xenium Data,4,Mus musculus,Xenium,Xenium,brain,,normal,0,,train
GSE342289,Multiscale spatial transcriptomics resolves the cellular and molecular architecture of the human amygdala [Xenium],4,Homo sapiens,Xenium,Xenium,brain,,normal,4,,train
GSE342343,The role of Angiopoietin 1 in acute-on-chronic liver failure,1,Mus musculus,Xenium,Xenium,liver,chronic liver failure,disease,1,,train
GSE342671,"Longitudinal single-cell and spatial transcriptomics reveals intratumor heterogeneity, therapeutic response, and comparative value of canine marginal zone lymphoma [spatial data]",1,Canis lupus familiaris,Visium,Visium,unknown,marginal zone lymphoma,disease,1,,val
GSE342687,Spatial transcriptomic dissection of intratumoral heterogeneity and microenvironment in sinonasal and skull base adenoid cystic carcinoma,6,Homo sapiens,Visium,Visium,head and neck,adenoid cystic carcinoma,disease,6,,train
GSE342703,Spatial-SCB,4,Homo sapiens,Visium HD,Visium HD,bone,,not stated,4,,train
GSE342709,Multiscale spatial transcriptomics resolves the cellular and molecular architecture of the human amygdala [Visium],51,Homo sapiens,Visium,Visium,brain,,normal,51,,train
GSE342738,Multiscale spatial transcriptomics resolves the cellular and molecular architecture of the human amygdala [Visium HD],5,Homo sapiens,Visium HD,Visium HD,brain,,normal,5,,train
GSE342913,"In situ targeted gene expression analysis of postnatal mouse cortex of LgDel model 22q11.2 deletion sydnrome, including treatment with antioxidant",5,Mus musculus,Xenium,Xenium,brain,,normal;disease;perturbation,5,,train
GSE343063,Spatially Resolved Cell-Cell Communication in Small Cell Lung Cancer Reveals Macrophage-Driven Immune Evasion Programs,5,Homo sapiens,Xenium,Xenium,lung,small cell lung carcinoma,disease,4,,train
GSE343350,Multi-tissue gene expression in HNSCC,2,Homo sapiens,Xenium,Xenium,head and neck,head and neck squamous cell carcinoma,disease,2,,train
GSE343400,Gelated Apoptotic Extracellular Vesicles via Enzyme-Instructed Self-Assembly with Multifunctional Microcapsule for Targeted Atherosclerosis Therapy,2,Mus musculus,Stereo-seq,Stereo-seq,blood vessel,atherosclerosis,normal;disease,0,,train
GSE343862,Zonated Cholesterol Sensing by SIRT2 Drives MASLD-HCC [Spatial transcriptomics],6,Mus musculus,Visium,Visium,liver,metabolic dysfunction-associated steatohepatitis;hepatocellular carcinoma;metabolic dysfunction-associated steatotic liver disease,normal;disease,6,,val
GSE344364,A single-cell and spatial transcriptomic atlas provides insights into the genetic regulation of secondary growth and specialized metabolism in the carrot taproot [Spatial Transcriptomics],1,Daucus carota,Stereo-seq,Stereo-seq,plant,,normal,0,,train
GSE344506,Spatial Transcriptomics to Investigate the Impact of HIV/ART on DLBCL Tumorigenesis and Tumor Microenvironment,32,Homo sapiens,Visium,Visium,unknown,diffuse large B-cell lymphoma,disease,32,,train
GSE344584,Olaparib plus tremelimumab in women with recurrent ovarian cancer and a germline BRCA1 or BRCA2 mutation: a phase I/II study,8,Homo sapiens,Xenium,Xenium,ovary;lymph node;other;unknown,ovarian cancer,disease,8,,train
GSE344594,Spatial transcriptomic landscape of protein-coding genes in descended and undescended testes of dogs with unilateral cryptorchidism,4,Canis lupus familiaris,Visium,Visium,testis,disorder of sexual differentiation;cryptorchidism;male reproductive system disorder,disease,0,,val
GSE344692,Placental TRPV2 supports trophoblast function and normal fetal development [MERSCOPE],4,Mus musculus,MERFISH/MERSCOPE,MERSCOPE,placenta;embryo (whole),,perturbation;normal,0,,train
GSE344748,REM sleep readiness and duration are encoded during NREM by spinal-projecting sublaterodorsal (SLD) neurons.,4,Mus musculus,Slide-seq,Slide-seq,brain,,perturbation,0,,val
GSE344969,Spatial transcriptomic profiling of calcified human coronary artery lesions,2,Homo sapiens,Visium,Visium,blood vessel,calcinosis,disease,2,,train
GSE345289,Gene expression mapping of eye after adipocyte depletion,2,Mus musculus,Xenium,Xenium,eye,,perturbation,2,,val
GSE345302,Spatial profiling identifies a distinct and topographically-defined tumor microenvironment that emerges during multiple myeloma evolution,8,Homo sapiens,Xenium,Xenium,bone marrow,plasma cell myeloma,disease,8,42678098,train
GSE345359,A single-nucleus and spatial transcriptomic atlas of the Syrian hamster preoptic area across hibernation states,4,Mesocricetus auratus,Xenium,Xenium,brain,,normal,1,,train
GSE345643,Human Adult and Pediatric Multimodal Transcriptomic Atlas of Progression from Pressure-Loaded to Failing Right Ventricle [Xenium spatial transcriptomics],6,Homo sapiens,Xenium,Xenium,heart,,disease;normal,6,,test
GSE345644,Human bladder cell spatial mapping [Xenium],1,Homo sapiens,Xenium,Xenium,bladder,,normal,1,,val
GSE345691,Functional Merlin Depletion Defines a TEAD1-Dependent Tumor Cell State that Promotes Schwannoma Progression: Xenium spatial transcriptomics,8,Homo sapiens,Xenium,Xenium,peripheral nerve,acoustic neuroma;NF2-related schwannomatosis,disease,8,,train
GSE346090,Distinct IL‑17A and retinoic acid–associated gene programs are enriched in epithelialized tunnels in severe hidradenitis suppurativa.,5,Homo sapiens,Visium,Visium,skin,hidradenitis suppurativa,disease,5,,test
GSE346722,Spatial compartmentalization shapes distinct germinal center states during respiratory viral infection,2,Macaca fascicularis,Xenium,Xenium,lymph node,COVID-19,disease,2,,val
GSE347650,Aging-Related Cellular and Molecular Changes Reveal a Role for Bglap3+ Neurons in MEC Spatial Cognition,16,Mus musculus,Visium,Visium,brain,,normal,16,,test
GSE348514,Xenium In Situ Spatial Perturb-Seq: Single-cell Functional Genomics of the Mouse Brain,2,Mus musculus,Xenium,Xenium,brain,,perturbation,2,,train
GSE348584,A single cell and spatial atlas of preinvasive breast cancer,15,Homo sapiens,Xenium,Xenium,breast,ductal breast carcinoma in situ,disease;normal,15,,test