def __msgc_step3_discontinuity_localization(self): """pass""" import scipy start = self._start_time seg = 1 - self.segmentation.astype(np.int8) self.stats['low level object voxels'] = np.sum(seg) self.stats['low level image voxels'] = np.prod(seg.shape) seg_border = scipy.ndimage.filters.laplace(seg, mode='constant') logger.debug('seg_border: %s', scipy.stats.describe(seg_border, axis=None)) seg_border[seg_border != 0] = 1 logger.debug('seg_border: %s', scipy.stats.describe(seg_border, axis=None)) boundary_dilatation_distance = self.segparams['boundary_dilatation_distance'] seg = scipy.ndimage.morphology.binary_dilation(seg_border, np.ones([boundary_dilatation_distance * 2 + 1, boundary_dilatation_distance * 2 + 1, boundary_dilatation_distance * 2 + 1])) if self.keep_temp_properties: self.temp_msgc_lowres_discontinuity = seg else: self.temp_msgc_lowres_discontinuity = None if self.debug_images: import sed3 pd = sed3.sed3(seg_border) pd.show() pd = sed3.sed3(seg) pd.show() self.stats['t3'] = time.time() - start return seg