AgentEHR-Bench / MIMICIVAgentBench /item_set /microbiologyevents.csv
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EPSTEIN-BARR VIRUS VCA-IgM AB,5967
RUBELLA IgG SEROLOGY,8701
CMV IgM ANTIBODY,6248
TOXOPLASMA IgG ANTIBODY,4985
EPSTEIN-BARR VIRUS VCA-IgG AB,5968
HCV VIRAL LOAD,12664
"RUBEOLA ANTIBODY, IgG",6347
EPSTEIN-BARR VIRUS EBNA IgG AB,5968
HIV-1 Viral Load/Ultrasensitive,14248
CMV IgG ANTIBODY,7134
RAPID PLASMA REAGIN TEST,44008
VARICELLA-ZOSTER IgG SEROLOGY,11123
"Blood Culture, Routine",423006
URINE CULTURE,339291
R/O VANCOMYCIN RESISTANT ENTEROCOCCUS,4111
ANAEROBIC CULTURE,49227
FLUID CULTURE,43247
GRAM STAIN,113931
MRSA SCREEN,56942
WOUND CULTURE,27681
OVA + PARASITES,17036
FECAL CULTURE,17497
Cryptosporidium/Giardia (DFA),5114
CAMPYLOBACTER CULTURE,17481
CLOSTRIDIUM DIFFICILE TOXIN A & B TEST,18098
"Chlamydia trachomatis, Nucleic Acid Probe, with Amplification",35057
"NEISSERIA GONORRHOEAE (GC), NUCLEIC ACID PROBE, WITH AMPLIFICATION",33717
HELICOBACTER PYLORI ANTIBODY TEST,9329
Lyme IgG,2780
Lyme IgM,2780
MONOSPOT,3321
ACID FAST CULTURE,20171
Fluid Culture in Bottles,4465
FUNGAL CULTURE,24031
ACID FAST SMEAR,18338
CMV Viral Load,14470
R/O Beta Strep Group A,4804
RESPIRATORY CULTURE,47102
TISSUE,10256
POTASSIUM HYDROXIDE PREPARATION,6241
ANAEROBIC BOTTLE,5390
AEROBIC BOTTLE,5384
CLOSTRIDIUM DIFFICILE TOXIN ASSAY,4022
Staph aureus Screen,9325
LYME SEROLOGY,7223
C. difficile PCR,27070
Aerobic Bottle Gram Stain,16756
Anaerobic Bottle Gram Stain,15596
R/O GROUP B BETA STREP,3165
SMEAR FOR BACTERIAL VAGINOSIS,10194
YEAST VAGINITIS CULTURE,9439
Legionella Urinary Antigen,10196
MUMPS IgG ANTIBODY,4631
LEGIONELLA CULTURE,4255
Respiratory Viral Culture,9249
Respiratory Viral Antigen Screen,9478
Rubella IgG/IgM Antibody,6004
ASO TITER,115
ASO Screen,492
VIRAL CULTURE,4676
CRYPTOCOCCAL ANTIGEN,3937
MICROSPORIDIA STAIN,2394
CYCLOSPORA STAIN,2620
FECAL CULTURE - R/O YERSINIA,6169
FECAL CULTURE - R/O VIBRIO,5406
FECAL CULTURE - R/O E.COLI 0157:H7,7053
DIRECT INFLUENZA A ANTIGEN TEST,3180
DIRECT INFLUENZA B ANTIGEN TEST,3181
REFLEX URINE CULTURE,1803
R/O Group B Strep - Penicillin Allergy,362
CHROMOSOME ANALYSIS-AMNIOTIC FLUID,157
HBV Viral Load,6626
TREPONEMAL ANTIBODY TEST,593
TOXOPLASMA IgM ANTIBODY,1743
BLOOD/AFB CULTURE,4473
BLOOD/FUNGAL CULTURE,4482
NOCARDIA CULTURE,1521
BRUCELLA BLOOD CULTURE,118
ED Gram Stain for Yeast,431
VIRAL CULTURE: R/O HERPES SIMPLEX VIRUS,2646
VARICELLA-ZOSTER CULTURE,841
CHROMOSOME ANALYSIS-BONE MARROW,1670
RPR w/check for Prozone,1113
QUANTITATIVE RPR,1083
Immunofluorescent test for Pneumocystis jirovecii (carinii),4490
VIRAL CULTURE: R/O CYTOMEGALOVIRUS,1717
CYTOMEGALOVIRUS EARLY ANTIGEN TEST (SHELL VIAL METHOD),1132
Stem Cell Aer/Ana Culture,1707
Swab - R/O Yeast - IC,59
Tissue Culture-Bone Marrow,744
Additional Cells and Karyotype,110
FOCUSED ANALYSIS,274
Staph aureus Preop PCR,1349
MOLECULAR CYTOGENETICS - DNA PROBE,1908
C. difficile Toxin antigen assay,464
"Sonication culture, prosthetic joint",185
GRAM STAIN- R/O THRUSH,309
DIRECT ANTIGEN TEST FOR VARICELLA-ZOSTER VIRUS,687
Malaria Antigen Test,374
Enterovirus Culture,1085
"INTERPHASE FISH ANALYSIS, 100-300 CELLS",1906
MOLECULAR CYTOGENETICS-DNA Probe,948
Myco-F Bottle Gram Stain,167
Respiratory Virus Identification,630
Tissue Culture - Neoplastic Blood,201
ADDITIONAL CELLS COUNTED,76
MTB Direct Amplification,866
Direct Antigen Test for Herpes Simplex Virus Types 1 & 2,858
Cipro Resistant Screen,19
Tissue culture for additional cells,11
"INTERPHASE FISH ANALYSIS, 25-99 CELLS",12
O&P MACROSCOPIC EXAM - WORM,226
URINE-GRAM STAIN - UNSPUN,125
HCV GENOTYPE,335
TRICHOMONAS SALINE PREP,47
MODIFIED ACID-FAST STAIN FOR NOCARDIA,65
QUANTITATIVE CRYPTOCOCCAL ANTIGEN,135
FUNGAL CULTURE (HAIR/SKIN/NAILS),254
R/O GC Only,219
SCOTCH TAPE PREP/PADDLE,36
GENITAL CULTURE FOR TOXIC SHOCK,34
"Anaerobic culture, Prosthetic Joint Fluid",74
POTASSIUM HYDROXIDE PREPARATION (HAIR/SKIN/NAILS),143
ISOLATE FOR MIC,29
Stool Hold Request,182
STEM CELL - AEROBIC BOTTLE,57
STEM CELL - ANAEROBIC BOTTLE,57
IMMUNOFLUORESCENT TEST FOR PNEUMOCYSTIS CARINII,34
TISSUE CULTURE-FLUID,22
GEN-PROBE AMPLIFIED M. TUBERCULOSIS DIRECT TEST (MTD),45
CHROMOSOME ANALYSIS-BLOOD,32
CHROMOSOME ANALYSIS-CVS,64
"Blood Culture, Neonate",25
POSTMORTEM CULTURE,27
Carbapenemase Resistant Enterobacteriaceae Screen,31
O&P MACROSCOPIC EXAM - ARTHROPOD,53
GENITAL CULTURE,87
TISSUE CULTURE-TISSUE,82
CHROMOSOME ANALYSIS - ADDITIONAL KARYOTYPE,3
M. furfur Blood Culture,26
TISSUE CULTURE-LYMPHOCYTE,9
CHROMOSOME ANALYSIS-TISSUE,54
voided,3
CHROMOSOME ANALYSIS-NEOPLASTIC BLOOD,50
SWAB- R/O YEAST,40
"Blood Culture, Post Mortem",9
M.FURFUR CULTURE,3
TISSUE CULTURE-CVS,4
BRUCELLA CULTURE,13
"FISH ANALYSIS, 3-5 CELLS",6
CHLAMYDIA CULTURE,2
DIRECT RSV ANTIGEN TEST,3
BARTONELLA BLOOD CULTURE,2
Acid Fast Stain for Cryptosporidium,11
Concentration and Stain for Giardia,8
STOOL SMEAR FOR POLYMORPHONUCLEAR LEUKOCYTES,1
Pediatric Bottle Gram Stain,2
TISSUE CULTURE-AMNIOTIC FLUID,6
CHROMOSOME ANALYSIS-FLUID,3
POST MORTEM MYCOLOGY CULTURE,2
POST-MORTEM VIRAL CULTURE,2
"FISH ANALYSIS, 10-30 CELLS",7
Cryopreservation - Cells,3
"Deparaffinization, Lysis of Cells",4
CVS NEEDLE ASPIRATION EVALUATION,3
Reflex HCV Qual PCR,1