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Update data/embeddings/probe_mut2vec/README.md

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data/embeddings/probe_mut2vec/README.md CHANGED
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  # Embedding name: PROBE-MUT2VEC
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  - Modality: Protein-associated representation
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- - Algorithm: Official PROBE human UniProt representation table, standardized by UniProt-to-master mapping
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  - Embedding source URL: https://huggingface.co/spaces/HUBioDataLab/PROBE
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  - Original model/code URL: https://github.com/HUBioDataLab/PROBE
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  This is a Mut2Vec protein-associated representation from the PROBE archive.
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- The source file used for this component was `MUT2VEC_UNIPROT_HUMAN.csv` from the official PROBE human UniProt representation archive. The raw vectors were not regenerated locally. The local work here was identifier cleaning, UniProt-to-gene mapping, duplicate handling, QC, and conversion into the shared public resource format.
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  ### Provenance fields
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  Cleaned UniProt accessions were mapped to master_gene_table.csv using `uniprot_id`, `hgnc_uniprot_ids`, and `map_uniprot_ids_all`. Only unique UniProt-to-master mappings were accepted. Ambiguous UniProt accessions were excluded. Duplicate source proteins mapping to the same final master-table gene were averaged within that gene.
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- The exact underlying UniProt/protein sequence database snapshot is inherited from the PROBE archive and should be checked against the official PROBE release documentation if a strict sequence-database timestamp is required.
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  ### Processing workflow
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  For this PROBE embedding:
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  ### Important implementation decisions
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- The PROBE vectors were taken directly from the official archive rather than recomputed. This keeps the PROBE batch aligned with the released human UniProt representation files.
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  All PROBE embeddings use the same mapping logic, so differences between PROBE outputs reflect the source representation type rather than different gene-mapping rules.
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  ### Summary of final mapping:
 
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  # Embedding name: PROBE-MUT2VEC
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  - Modality: Protein-associated representation
 
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  - Embedding source URL: https://huggingface.co/spaces/HUBioDataLab/PROBE
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  - Original model/code URL: https://github.com/HUBioDataLab/PROBE
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  This is a Mut2Vec protein-associated representation from the PROBE archive.
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+ The source file used for this component was `MUT2VEC_UNIPROT_HUMAN.csv` from the official PROBE human UniProt representation archive.
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  ### Provenance fields
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  Cleaned UniProt accessions were mapped to master_gene_table.csv using `uniprot_id`, `hgnc_uniprot_ids`, and `map_uniprot_ids_all`. Only unique UniProt-to-master mappings were accepted. Ambiguous UniProt accessions were excluded. Duplicate source proteins mapping to the same final master-table gene were averaged within that gene.
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  ### Processing workflow
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  For this PROBE embedding:
 
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  ### Important implementation decisions
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  All PROBE embeddings use the same mapping logic, so differences between PROBE outputs reflect the source representation type rather than different gene-mapping rules.
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  ### Summary of final mapping: