diff --git a/data/embeddings/alphagenome_tss1mb_regulatory_tracksummary_pca256/metadata.json b/data/embeddings/alphagenome_tss1mb_regulatory_tracksummary_pca256/metadata.json index 36561dd9b6ff265a9c368559b4d55c5a1ef4efbf..718f55b41f7411b1bf5700882290efd3cebbb6bb 100644 --- a/data/embeddings/alphagenome_tss1mb_regulatory_tracksummary_pca256/metadata.json +++ b/data/embeddings/alphagenome_tss1mb_regulatory_tracksummary_pca256/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "alphagenome_tss1mb_regulatory_tracksummary_pca256", - "display_name": "AlphaGenome-TSS1Mb-regulatoryTrackSummary-PCA256-v1.1", + "display_name": "AlphaGenome-TSS1Mb-regulatoryTrackSummary-PCA256", "species": "Homo sapiens", "n_genes": 20084, "n_dimensions": 256, diff --git a/data/embeddings/basenji2_tss_131kb_human_central3/metadata.json b/data/embeddings/basenji2_tss_131kb_human_central3/metadata.json index 554f1ce8754900d8189cf3e91bf8f87b1cdf5bbf..a19576eb9f4a44412867e34748893145b0985e82 100644 --- a/data/embeddings/basenji2_tss_131kb_human_central3/metadata.json +++ b/data/embeddings/basenji2_tss_131kb_human_central3/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "basenji2_tss_131kb_human_central3", - "display_name": "Basenji2-TSS-131kb-human-central3-log1p-zscore-v1.1", + "display_name": "Basenji2-TSS-131kb-human-central3-log1p-zscore", "modality": "regulatory DNA / Basenji2 TSS sequence model", "species": "Homo sapiens", "n_genes": 20097, diff --git a/data/embeddings/biobert_gene_protein_summary/metadata.json b/data/embeddings/biobert_gene_protein_summary/metadata.json index f3ce49070451535943d0a0dc9d71a5ff58f43532..16f58073e00e6bad19d6bede79413aca9628b129 100644 --- a/data/embeddings/biobert_gene_protein_summary/metadata.json +++ b/data/embeddings/biobert_gene_protein_summary/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "biobert_gene_protein_summary", - "display_name": "BioBERT-GeneProteinSummary-v1.1", + "display_name": "BioBERT-GeneProteinSummary", "modality": "literature_text_gene_summary", "species": "Homo sapiens", "n_genes": 19168, diff --git a/data/embeddings/bioconceptvec_cbow/metadata.json b/data/embeddings/bioconceptvec_cbow/metadata.json index 6fd1843af0cc5e051a6cf458cf460914d6a6ec42..0362941d33df298d48d788b301765b8ee2a830a3 100644 --- a/data/embeddings/bioconceptvec_cbow/metadata.json +++ b/data/embeddings/bioconceptvec_cbow/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "bioconceptvec_cbow", - "display_name": "BioConceptVec-CBOW-v1.1", + "display_name": "BioConceptVec-CBOW", "modality": "biomedical_literature_text", "species": "Homo sapiens", "original_identifier_type": "BioConceptVec concept key with Entrez/NCBI Gene ID, e.g. Gene_7157", diff --git a/data/embeddings/bioconceptvec_fasttext/metadata.json b/data/embeddings/bioconceptvec_fasttext/metadata.json index d7a8e1280894154aee3f2d6f0b00a2f4f5d79bf8..4737d56ecbb30ec7c4d7fd526aa5a83aed7d60cb 100644 --- a/data/embeddings/bioconceptvec_fasttext/metadata.json +++ b/data/embeddings/bioconceptvec_fasttext/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "bioconceptvec_fasttext", - "display_name": "BioConceptVec-fastText-v1.1", + "display_name": "BioConceptVec-fastText", "modality": "biomedical_literature_text", "species": "Homo sapiens", "original_identifier_type": "BioConceptVec concept key with Entrez/NCBI Gene ID, e.g. Gene_7157", diff --git a/data/embeddings/bioconceptvec_glove/metadata.json b/data/embeddings/bioconceptvec_glove/metadata.json index 10788611a12a5434b986e2d5af4fc1a1c2c86ef8..522da1dab805bb696d2453854759b7cc7f025405 100644 --- a/data/embeddings/bioconceptvec_glove/metadata.json +++ b/data/embeddings/bioconceptvec_glove/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "bioconceptvec_glove", - "display_name": "BioConceptVec-GloVe-v1.1", + "display_name": "BioConceptVec-GloVe", "modality": "biomedical_literature_text", "species": "Homo sapiens", "original_identifier_type": "BioConceptVec concept key with Entrez/NCBI Gene ID, e.g. Gene_7157", diff --git a/data/embeddings/bioconceptvec_skipgram/metadata.json b/data/embeddings/bioconceptvec_skipgram/metadata.json index 93c951962feef9cabf9979de8383bd51fa6730b0..ed96a90f6e1ba0ac2a43b22d5b7616345c251b35 100644 --- a/data/embeddings/bioconceptvec_skipgram/metadata.json +++ b/data/embeddings/bioconceptvec_skipgram/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "bioconceptvec_skipgram", - "display_name": "BioConceptVec-SkipGram-v1.1", + "display_name": "BioConceptVec-SkipGram", "modality": "biomedical_literature_text", "species": "Homo sapiens", "original_identifier_type": "BioConceptVec concept key with Entrez/NCBI Gene ID, e.g. Gene_7157", diff --git a/data/embeddings/cmap_gse106127_cgs_mean_landmark978_zscore/metadata.json b/data/embeddings/cmap_gse106127_cgs_mean_landmark978_zscore/metadata.json index d51bf54154b49e85ea489507f6950e56d26f10c7..e92f7f572deeb4bdae92eefb7c12418b06beb5af 100644 --- a/data/embeddings/cmap_gse106127_cgs_mean_landmark978_zscore/metadata.json +++ b/data/embeddings/cmap_gse106127_cgs_mean_landmark978_zscore/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "cmap_gse106127_cgs_mean_landmark978_zscore", - "display_name": "CMap-GSE106127-CGS-mean-landmark978-zscore-v1.1", + "display_name": "CMap-GSE106127-CGS-mean-landmark978-zscore", "modality": "perturbational transcriptomics / L1000 consensus genetic perturbation signatures", "species": "Homo sapiens", "n_genes": 4070, diff --git a/data/embeddings/deepnf_string_v12_ppmi_svd_fusion/metadata.json b/data/embeddings/deepnf_string_v12_ppmi_svd_fusion/metadata.json index 5b77c1936f23e0f00648a6079be38a50f53bf6dd..60e01692183b35cf91259188987a773f1d8fca9a 100644 --- a/data/embeddings/deepnf_string_v12_ppmi_svd_fusion/metadata.json +++ b/data/embeddings/deepnf_string_v12_ppmi_svd_fusion/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "deepnf_string_v12_ppmi_svd_fusion", - "display_name": "deepNF-STRING-v12-PPMI-SVD-fusion-v1.1", + "display_name": "deepNF-STRING-v12-PPMI-SVD-fusion", "modality": "STRING network multimodal sparse PPMI/SVD fusion", "species": "Homo sapiens", "original_identifier_type": "STRING protein ID / Ensembl protein ID", diff --git a/data/embeddings/deepsea_tss_1kb_epigenomic_probs/metadata.json b/data/embeddings/deepsea_tss_1kb_epigenomic_probs/metadata.json index f69d70b51d7e5dcf437a3f215d654ab6d4e9cf37..a279da80793dbaf1b0597b05631144083b613b13 100644 --- a/data/embeddings/deepsea_tss_1kb_epigenomic_probs/metadata.json +++ b/data/embeddings/deepsea_tss_1kb_epigenomic_probs/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "deepsea_tss_1kb_epigenomic_probs", - "display_name": "DeepSEA-TSS-1kb-epigenomic-probabilities-zscore-v1.1", + "display_name": "DeepSEA-TSS-1kb-epigenomic-probabilities-zscore", "modality": "regulatory DNA / promoter-TSS sequence model", "species": "Homo sapiens", "n_genes": 20097, diff --git a/data/embeddings/depmap_crispr_gene_effect_pca256/metadata.json b/data/embeddings/depmap_crispr_gene_effect_pca256/metadata.json index 23d4bd22ac995b4de3ae9d63cdde516c64d8a1e5..86efdc4bef55d96e38e621f285ad9bc173a876ff 100644 --- a/data/embeddings/depmap_crispr_gene_effect_pca256/metadata.json +++ b/data/embeddings/depmap_crispr_gene_effect_pca256/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "depmap_crispr_gene_effect_pca256", - "display_name": "DepMap-CRISPRGeneEffect-PCA256-v1.1", + "display_name": "DepMap-CRISPRGeneEffect-PCA256", "modality": "functional genomics / CRISPR dependency", "species": "Homo sapiens", "n_genes": 18562, diff --git a/data/embeddings/dnabert2_117m_cds/metadata.json b/data/embeddings/dnabert2_117m_cds/metadata.json index 316bbc4df9f1f7ffb0f7671ba707908cd6ea485b..9241d186c51830b6f05ca4e5ff686b6df52985b4 100644 --- a/data/embeddings/dnabert2_117m_cds/metadata.json +++ b/data/embeddings/dnabert2_117m_cds/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "dnabert2_117m_cds", - "display_name": "dnabert2_117m_cds_v1_1", + "display_name": "dnabert2_117m_cds", "species": "Homo sapiens", "n_genes": 20085, "n_dimensions": 768, diff --git a/data/embeddings/enformer_tss_393kb_human_central3/metadata.json b/data/embeddings/enformer_tss_393kb_human_central3/metadata.json index 587b997141e1d8bbdeede889c121e5978986b310..ec49dfd6cc7a7dee026db9d60925d4d1d0693724 100644 --- a/data/embeddings/enformer_tss_393kb_human_central3/metadata.json +++ b/data/embeddings/enformer_tss_393kb_human_central3/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "enformer_tss_393kb_human_central3", - "display_name": "Enformer-TSS-393kb-human-central3-log1p-zscore-v1.1", + "display_name": "Enformer-TSS-393kb-human-central3-log1p-zscore", "modality": "regulatory DNA / long-range TSS sequence model", "species": "Homo sapiens", "n_genes": 20097, diff --git a/data/embeddings/esm2/metadata.json b/data/embeddings/esm2/metadata.json index c8e953cf5d4dda16cd3e1f786e20a92667b35987..e96c7913cba8f27d65d0750147ab6dea997d0036 100644 --- a/data/embeddings/esm2/metadata.json +++ b/data/embeddings/esm2/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "esm2", - "display_name": "ESM2-v1.1", + "display_name": "ESM2", "modality": "protein_sequence", "species": "Homo sapiens", "original_identifier_type": "Entrez", diff --git a/data/embeddings/frogs_archs4_256/metadata.json b/data/embeddings/frogs_archs4_256/metadata.json index dd9c11932bb3d2fe9d33c4532c25a3a6c2854147..d2c6749e70373fca436076e88a21204cd7ff07a9 100644 --- a/data/embeddings/frogs_archs4_256/metadata.json +++ b/data/embeddings/frogs_archs4_256/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "frogs_archs4_256", - "display_name": "frogs_archs4_256_v1_1", + "display_name": "frogs_archs4_256", "species": "Homo sapiens", "original_identifier_type": "Entrez Gene ID", "n_genes": 16265, diff --git a/data/embeddings/gene2vec/metadata.json b/data/embeddings/gene2vec/metadata.json index eaeead55db36fc658c8610532110270b5960910b..26c0b537f8d88b8b6d7e776aff54182f416480f0 100644 --- a/data/embeddings/gene2vec/metadata.json +++ b/data/embeddings/gene2vec/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "gene2vec", - "display_name": "Gene2Vec-v1.1", + "display_name": "Gene2Vec", "modality": "coexpression_expression", "species": "Homo sapiens", "original_identifier_type": "gene_symbol", diff --git a/data/embeddings/genecompass_base_gene_token/metadata.json b/data/embeddings/genecompass_base_gene_token/metadata.json index b53873ca9722bde90779d6ae86dfa386574c528d..9fceac5e9b5d1c2a49afb94327748c1de4f2a2b6 100644 --- a/data/embeddings/genecompass_base_gene_token/metadata.json +++ b/data/embeddings/genecompass_base_gene_token/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "genecompass_base_gene_token", - "display_name": "genecompass_base_gene_token_v1_1", + "display_name": "genecompass_base_gene_token", "modality": "gene expression single-cell foundation model / knowledge-informed gene-token embedding", "species": "Homo sapiens", "n_genes": 16578, diff --git a/data/embeddings/geneformer_v2_316m/metadata.json b/data/embeddings/geneformer_v2_316m/metadata.json index e28c6e103b94c29dc14a29026d557473e7a4bfaf..a33eec18492819338f4100df38bc44ac45f128fe 100644 --- a/data/embeddings/geneformer_v2_316m/metadata.json +++ b/data/embeddings/geneformer_v2_316m/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "geneformer_v2_316m", - "display_name": "Geneformer-V2-316M-v1.1", + "display_name": "Geneformer-V2-316M", "modality": "single_cell_expression_foundation_model", "species": "Homo sapiens", "original_identifier_type": "Geneformer token dictionary Ensembl gene ID", diff --git a/data/embeddings/genept_ada/metadata.json b/data/embeddings/genept_ada/metadata.json index 41724e55bd3754a495ab652d8732c866865472ac..cceb223cda9e81ae09f8dd29467eb273085789d8 100644 --- a/data/embeddings/genept_ada/metadata.json +++ b/data/embeddings/genept_ada/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "genept_ada", - "display_name": "GenePT-ADA-v1.1-conservative", + "display_name": "GenePT-ADA-conservative", "modality": "biomedical_literature_text", "species": "Homo sapiens", "original_identifier_type": "gene_symbol", diff --git a/data/embeddings/genept_model3_gene_protein/metadata.json b/data/embeddings/genept_model3_gene_protein/metadata.json index f2a90aeb1f11f7bcaa4ce7fb095890975cd10a30..7fa78ebfe832821aaac34fcf5edf434f73e806f7 100644 --- a/data/embeddings/genept_model3_gene_protein/metadata.json +++ b/data/embeddings/genept_model3_gene_protein/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "genept_model3_gene_protein", - "display_name": "GenePT-Model3-GeneProtein-v1.1-conservative", + "display_name": "GenePT-Model3-GeneProtein-conservative", "modality": "biomedical_literature_text_plus_protein_sequence_text", "species": "Homo sapiens", "original_identifier_type": "gene_symbol", diff --git a/data/embeddings/gtex_tissue_median_log1p_zscore/metadata.json b/data/embeddings/gtex_tissue_median_log1p_zscore/metadata.json index 943cedb1f1cfd2132b82ed142162aec5ad5132d5..a621eacc71122006a892c86e02777264acfda4e7 100644 --- a/data/embeddings/gtex_tissue_median_log1p_zscore/metadata.json +++ b/data/embeddings/gtex_tissue_median_log1p_zscore/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "gtex_tissue_median_log1p_zscore", - "display_name": "GTEx-tissue-median-log1p-zscore-v1.1", + "display_name": "GTEx-tissue-median-log1p-zscore", "modality": "bulk RNA expression / normal tissue expression", "species": "Homo sapiens", "n_genes": 19353, diff --git a/data/embeddings/helix_mrna_full_transcript/metadata.json b/data/embeddings/helix_mrna_full_transcript/metadata.json index eb55c12f0d8f70bd49676fcf2cef9b3a90c6dfc9..b01bca243705177ce9ca53879d4883b4259d9f83 100644 --- a/data/embeddings/helix_mrna_full_transcript/metadata.json +++ b/data/embeddings/helix_mrna_full_transcript/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "helix_mrna_full_transcript", - "display_name": "helix_mrna_full_transcript_v1_1", + "display_name": "helix_mrna_full_transcript", "modality": "mRNA language model / mature transcript sequence", "species": "Homo sapiens", "n_genes": 19976, diff --git a/data/embeddings/hetionet_nonppi_biomedical_context_tfidf_svd256/metadata.json b/data/embeddings/hetionet_nonppi_biomedical_context_tfidf_svd256/metadata.json index 0db041b30204763fc2863abd0649d9b2e4b17743..58a4144eae990c946a26b4851ad816738359d31b 100644 --- a/data/embeddings/hetionet_nonppi_biomedical_context_tfidf_svd256/metadata.json +++ b/data/embeddings/hetionet_nonppi_biomedical_context_tfidf_svd256/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "hetionet_nonppi_biomedical_context_tfidf_svd256", - "display_name": "Hetionet-nonPPI-biomedical-context-TFIDF-SVD256-v1.1", + "display_name": "Hetionet-nonPPI-biomedical-context-TFIDF-SVD256", "modality": "heterogeneous biomedical knowledge graph / non-PPI gene context", "species": "Homo sapiens", "n_genes": 18787, diff --git a/data/embeddings/hpa_normal_ihc_tissue_level_zscore/metadata.json b/data/embeddings/hpa_normal_ihc_tissue_level_zscore/metadata.json index 9187c51f5697e8646833a939bc08671989dd30f4..7b80f1dd5498bcaf45787746f397a2f156a6adf3 100644 --- a/data/embeddings/hpa_normal_ihc_tissue_level_zscore/metadata.json +++ b/data/embeddings/hpa_normal_ihc_tissue_level_zscore/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "hpa_normal_ihc_tissue_level_zscore", - "display_name": "HPA-normal-IHC-tissue-level-zscore-v1.1", + "display_name": "HPA-normal-IHC-tissue-level-zscore", "modality": "protein expression / normal tissue immunohistochemistry", "species": "Homo sapiens", "n_genes": 13420, diff --git a/data/embeddings/hpa_subcellular_location_multihot_zscore/metadata.json b/data/embeddings/hpa_subcellular_location_multihot_zscore/metadata.json index 4f02db89bb48c1f623afc7b177b79d83f580a92e..1b701e3cfd303fae6c6aa049fd68128818fe574c 100644 --- a/data/embeddings/hpa_subcellular_location_multihot_zscore/metadata.json +++ b/data/embeddings/hpa_subcellular_location_multihot_zscore/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "hpa_subcellular_location_multihot_zscore", - "display_name": "HPA-subcellular-location-multihot-zscore-v1.1", + "display_name": "HPA-subcellular-location-multihot-zscore", "modality": "protein subcellular localization", "species": "Homo sapiens", "n_genes": 13581, diff --git a/data/embeddings/hyenadna_medium_160k_cds/metadata.json b/data/embeddings/hyenadna_medium_160k_cds/metadata.json index 856b1c4b449894dee40b22ab1fab1aec6e91f63c..6e621d6bfee1acb1d73c24eeb17746e3719b0252 100644 --- a/data/embeddings/hyenadna_medium_160k_cds/metadata.json +++ b/data/embeddings/hyenadna_medium_160k_cds/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "hyenadna_medium_160k_cds", - "display_name": "hyenadna_medium_160k_cds_v1_1", + "display_name": "hyenadna_medium_160k_cds", "modality": "DNA language model / canonical CDS sequence", "species": "Homo sapiens", "n_genes": 20085, diff --git a/data/embeddings/mahi_all_contexts_mean/metadata.json b/data/embeddings/mahi_all_contexts_mean/metadata.json index 573db78b48d8936a864df50d9d91ac35f9e4a5eb..a7c47b7c43e792b1c93a8e49fadca4cbb4dcf4ea 100644 --- a/data/embeddings/mahi_all_contexts_mean/metadata.json +++ b/data/embeddings/mahi_all_contexts_mean/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "mahi_all_contexts_mean", - "display_name": "mahi_all_contexts_mean_v1_1", + "display_name": "mahi_all_contexts_mean", "species": "Homo sapiens", "n_genes": 18918, "n_dimensions": 3666, diff --git a/data/embeddings/mahi_global/metadata.json b/data/embeddings/mahi_global/metadata.json index 4a73ed92f8629d98bc5c4f3bff17ee16a8a436a2..ea0741798349bf588dfa40150dd9ccb4c635cfb1 100644 --- a/data/embeddings/mahi_global/metadata.json +++ b/data/embeddings/mahi_global/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "mahi_global", - "display_name": "mahi_global_v1_1", + "display_name": "mahi_global", "species": "Homo sapiens", "n_genes": 18918, "n_dimensions": 3666, diff --git a/data/embeddings/mashup_string/metadata.json b/data/embeddings/mashup_string/metadata.json index 2de6165a89cedf0ea752073595c03c01df1b3288..c9651e4e179fb37884fa762de2ad61e001dcccf0 100644 --- a/data/embeddings/mashup_string/metadata.json +++ b/data/embeddings/mashup_string/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "mashup_string", - "display_name": "Mashup-STRING-v1.1", + "display_name": "Mashup-STRING", "modality": "network_ppi", "species": "Homo sapiens", "mapping_method": "priority mapping using enriched master table: current symbols, HGNC previous symbols, HGNC alias symbols, canonical protein IDs, GRCh38 protein IDs, GRCh37 protein IDs", diff --git a/data/embeddings/msa_transformer_depth1_uniprot_human/metadata.json b/data/embeddings/msa_transformer_depth1_uniprot_human/metadata.json index d0a3529b9b43f33ff4d54e5ca72061276ed7ed22..1ec3f9ad8bdbf72c083223fb49cbd4e4725054c7 100644 --- a/data/embeddings/msa_transformer_depth1_uniprot_human/metadata.json +++ b/data/embeddings/msa_transformer_depth1_uniprot_human/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "msa_transformer_depth1_uniprot_human", - "display_name": "MSATransformer-depth1-UniProt-human-v1.1", + "display_name": "MSATransformer-depth1-UniProt-human", "modality": "protein_sequence_msa_transformer_depth1", "species": "Homo sapiens", "n_genes": 19472, diff --git a/data/embeddings/newt_archs4_256/metadata.json b/data/embeddings/newt_archs4_256/metadata.json index 06c0596d54c04ce29fe3c49f3c426703977fa895..6a1ec090297c658a6bf1e34719b33f3a63ebe374 100644 --- a/data/embeddings/newt_archs4_256/metadata.json +++ b/data/embeddings/newt_archs4_256/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "newt_archs4_256", - "display_name": "NEWT-ARCHS4-256-v1.1", + "display_name": "NEWT-ARCHS4-256", "modality": "multimodal functional/regulatory/co-expression/pathway gene embedding component from NEWT", "species": "Homo sapiens", "original_identifier_type": "Entrez Gene ID", diff --git a/data/embeddings/newt_cellnet/metadata.json b/data/embeddings/newt_cellnet/metadata.json index 1cbe0baa012cfb49ec31a36a2043218c7973a40e..2ad7eb6ef28d844a5fb29fb6a5e18aed1eb6de7c 100644 --- a/data/embeddings/newt_cellnet/metadata.json +++ b/data/embeddings/newt_cellnet/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "newt_cellnet", - "display_name": "NEWT-CellNet-v1.1", + "display_name": "NEWT-CellNet", "modality": "multimodal functional/regulatory/co-expression/pathway gene embedding component from NEWT", "species": "Homo sapiens", "original_identifier_type": "Entrez Gene ID", diff --git a/data/embeddings/newt_go_256/metadata.json b/data/embeddings/newt_go_256/metadata.json index b59ba2ee1b92606ef73cf631f65a7f0c10878923..53a5f68c9d9cce8c44a41807070fed4a1b19092f 100644 --- a/data/embeddings/newt_go_256/metadata.json +++ b/data/embeddings/newt_go_256/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "newt_go_256", - "display_name": "NEWT-GO-256-v1.1", + "display_name": "NEWT-GO-256", "modality": "multimodal functional/regulatory/co-expression/pathway gene embedding component from NEWT", "species": "Homo sapiens", "original_identifier_type": "Entrez Gene ID", diff --git a/data/embeddings/newt_go_graph/metadata.json b/data/embeddings/newt_go_graph/metadata.json index 31f0f9512af4de336f829ab2b1efbf99e10ec530..ac115c0ce56d348e4f6469ff039da8aba210abc3 100644 --- a/data/embeddings/newt_go_graph/metadata.json +++ b/data/embeddings/newt_go_graph/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "newt_go_graph", - "display_name": "NEWT-GO-graph-v1.1", + "display_name": "NEWT-GO-graph", "modality": "multimodal functional/regulatory/co-expression/pathway gene embedding component from NEWT", "species": "Homo sapiens", "original_identifier_type": "Entrez Gene ID", diff --git a/data/embeddings/newt_msigdb_bundle/metadata.json b/data/embeddings/newt_msigdb_bundle/metadata.json index fa6f9ca75e88fd313595722e7d772d79436b5117..146f547872165705d456aa1a2fab8dea4d4b598a 100644 --- a/data/embeddings/newt_msigdb_bundle/metadata.json +++ b/data/embeddings/newt_msigdb_bundle/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "newt_msigdb_bundle", - "display_name": "NEWT-MSigDB-bundle-v1.1", + "display_name": "NEWT-MSigDB-bundle", "modality": "multimodal functional/regulatory/co-expression/pathway gene embedding component from NEWT", "species": "Homo sapiens", "original_identifier_type": "Entrez Gene ID", diff --git a/data/embeddings/node2vec_consensus_ppi/metadata.json b/data/embeddings/node2vec_consensus_ppi/metadata.json index 737ac3369f89be0e1f94a3f986c310f78cde418c..37936deb5972bc4b9b6514515c85e1528efcf836 100644 --- a/data/embeddings/node2vec_consensus_ppi/metadata.json +++ b/data/embeddings/node2vec_consensus_ppi/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "node2vec_consensus_ppi", - "display_name": "Node2Vec-consensus-PPI-v1.1", + "display_name": "Node2Vec-consensus-PPI", "modality": "PPI network embedding", "species": "Homo sapiens", "original_identifier_type": "Entrez Gene ID", diff --git a/data/embeddings/nt_v2_500m_multispecies_cds/metadata.json b/data/embeddings/nt_v2_500m_multispecies_cds/metadata.json index 7b4fd583378d6b5ca53d64afd420ca9790377a57..20cce46d8f520d9baaae652f8272d87bde06e4b5 100644 --- a/data/embeddings/nt_v2_500m_multispecies_cds/metadata.json +++ b/data/embeddings/nt_v2_500m_multispecies_cds/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "nt_v2_500m_multispecies_cds", - "display_name": "nt_v2_500m_multispecies_cds_v1_1", + "display_name": "nt_v2_500m_multispecies_cds", "modality": "DNA language model / CDS sequence", "species": "Homo sapiens", "n_genes": 20085, diff --git a/data/embeddings/opa2vec_goa_human/metadata.json b/data/embeddings/opa2vec_goa_human/metadata.json index 4c02336e792328760df7a8de7d5c5362b143bc6c..fd0b08123cca1b8d9f92196bb46a8656ea83a63f 100644 --- a/data/embeddings/opa2vec_goa_human/metadata.json +++ b/data/embeddings/opa2vec_goa_human/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "opa2vec_goa_human", - "display_name": "OPA2Vec-GOA-human-v1.1", + "display_name": "OPA2Vec-GOA-human", "modality": "Gene Ontology / ontology-annotation semantic embedding", "species": "Homo sapiens", "original_identifier_type": "UniProt accession", diff --git a/data/embeddings/orthrus_base_4track_full_transcript/metadata.json b/data/embeddings/orthrus_base_4track_full_transcript/metadata.json index 6f2fde8bde7c7d19b7f17a72d07114625abe146c..514ce904f72bae3bccbb5df3adc167e0369d4d31 100644 --- a/data/embeddings/orthrus_base_4track_full_transcript/metadata.json +++ b/data/embeddings/orthrus_base_4track_full_transcript/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "orthrus_base_4track_full_transcript", - "display_name": "orthrus_base_4track_full_transcript_v1_1", + "display_name": "orthrus_base_4track_full_transcript", "species": "Homo sapiens", "n_genes": 19976, "n_dimensions": 256, diff --git a/data/embeddings/primekg_nonppi_biomedical_context_tfidf_svd256/metadata.json b/data/embeddings/primekg_nonppi_biomedical_context_tfidf_svd256/metadata.json index c6a346de5bc6b11fd7c7440a9c987dad7be08f84..0447d887142750370d17d3ad6bc8b1decb951981 100644 --- a/data/embeddings/primekg_nonppi_biomedical_context_tfidf_svd256/metadata.json +++ b/data/embeddings/primekg_nonppi_biomedical_context_tfidf_svd256/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "primekg_nonppi_biomedical_context_tfidf_svd256", - "display_name": "PrimeKG-nonPPI-biomedical-context-TFIDF-SVD256-v1.1", + "display_name": "PrimeKG-nonPPI-biomedical-context-TFIDF-SVD256", "modality": "heterogeneous biomedical knowledge graph / non-PPI gene context", "species": "Homo sapiens", "n_genes": 19216, diff --git a/data/embeddings/probe_aac/metadata.json b/data/embeddings/probe_aac/metadata.json index 8321288ba011f832501f5fde19b2ad7c05e2d73b..d203c5bfcd3ff1bac6a5aafb6ef5c11d72a39f53 100644 --- a/data/embeddings/probe_aac/metadata.json +++ b/data/embeddings/probe_aac/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "probe_aac", - "display_name": "probe_aac_v1_1", + "display_name": "aac", "modality": "protein sequence / protein representation from PROBE human UniProt archive", "species": "Homo sapiens", "original_identifier_type": "UniProt accession", diff --git a/data/embeddings/probe_albert/metadata.json b/data/embeddings/probe_albert/metadata.json index 62922ad5d6b9cc482468415e49b7bb642a1fb415..3f9177b44f467f60d3ece34103f639dc95d38bdb 100644 --- a/data/embeddings/probe_albert/metadata.json +++ b/data/embeddings/probe_albert/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "probe_albert", - "display_name": "probe_albert_v1_1", + "display_name": "albert", "modality": "protein sequence / protein representation from PROBE human UniProt archive", "species": "Homo sapiens", "original_identifier_type": "UniProt accession", diff --git a/data/embeddings/probe_apaac/metadata.json b/data/embeddings/probe_apaac/metadata.json index c6c88574bcfe68cf66ccb95ab1a7d3c6cb1058f6..4d9785ebb6db953b1308be7ff4fd90474a887f8e 100644 --- a/data/embeddings/probe_apaac/metadata.json +++ b/data/embeddings/probe_apaac/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "probe_apaac", - "display_name": "probe_apaac_v1_1", + "display_name": "apaac", "modality": "protein sequence / protein representation from PROBE human UniProt archive", "species": "Homo sapiens", "original_identifier_type": "UniProt accession", diff --git a/data/embeddings/probe_bert_bfd/metadata.json b/data/embeddings/probe_bert_bfd/metadata.json index 54039b8b23e12051f3bde650aa05f1a09a6e7f6d..7e8091e6638371f2c169b7287d2e3229c053a8d7 100644 --- a/data/embeddings/probe_bert_bfd/metadata.json +++ b/data/embeddings/probe_bert_bfd/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "probe_bert_bfd", - "display_name": "probe_bert_bfd_v1_1", + "display_name": "bert_bfd", "modality": "protein sequence / protein representation from PROBE human UniProt archive", "species": "Homo sapiens", "original_identifier_type": "UniProt accession", diff --git a/data/embeddings/probe_bert_pfam/metadata.json b/data/embeddings/probe_bert_pfam/metadata.json index 1686fbe015c9728f8e6c43980fb6756c0f0e3b3f..5f5d666b6d1a872557dfa426d124e3bafbd204df 100644 --- a/data/embeddings/probe_bert_pfam/metadata.json +++ b/data/embeddings/probe_bert_pfam/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "probe_bert_pfam", - "display_name": "probe_bert_pfam_v1_1", + "display_name": "bert_pfam", "modality": "protein sequence / protein representation from PROBE human UniProt archive", "species": "Homo sapiens", "original_identifier_type": "UniProt accession", diff --git a/data/embeddings/probe_blast/metadata.json b/data/embeddings/probe_blast/metadata.json index d2e78241982cc0592b870669e00d7d5cbf25ca2e..8b92f95478e5f1393f2fdb62f9287bc7d71891ab 100644 --- a/data/embeddings/probe_blast/metadata.json +++ b/data/embeddings/probe_blast/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "probe_blast", - "display_name": "probe_blast_v1_1", + "display_name": "blast", "modality": "protein sequence / protein representation from PROBE human UniProt archive", "species": "Homo sapiens", "original_identifier_type": "UniProt accession", diff --git a/data/embeddings/probe_cpc_prot/metadata.json b/data/embeddings/probe_cpc_prot/metadata.json index cd41279e09da77b8491b2a92a842acb4aa058c04..08072bc7cbe0c084bb23f126d280bc9791159339 100644 --- a/data/embeddings/probe_cpc_prot/metadata.json +++ b/data/embeddings/probe_cpc_prot/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "probe_cpc_prot", - "display_name": "probe_cpc_prot_v1_1", + "display_name": "cpc_prot", "modality": "protein sequence / protein representation from PROBE human UniProt archive", "species": "Homo sapiens", "original_identifier_type": "UniProt accession", diff --git a/data/embeddings/probe_esmb1/metadata.json b/data/embeddings/probe_esmb1/metadata.json index d3930b6fb9126d15b66a47582eced1cb4c29e7b4..d89802c70ec1a869937fe86b8bed5649c70a4dff 100644 --- a/data/embeddings/probe_esmb1/metadata.json +++ b/data/embeddings/probe_esmb1/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "probe_esmb1", - "display_name": "probe_esmb1_v1_1", + "display_name": "esmb1", "modality": "protein sequence / protein representation from PROBE human UniProt archive", "species": "Homo sapiens", "original_identifier_type": "UniProt accession", diff --git a/data/embeddings/probe_gene2vec_uniprot/metadata.json b/data/embeddings/probe_gene2vec_uniprot/metadata.json index 12dd4c2bb1d91fc5ab7276620e7612f9f08ebb81..c320d16b74b2825feb5f05c42d427f91e98a66a6 100644 --- a/data/embeddings/probe_gene2vec_uniprot/metadata.json +++ b/data/embeddings/probe_gene2vec_uniprot/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "probe_gene2vec_uniprot", - "display_name": "probe_gene2vec_uniprot_v1_1", + "display_name": "gene2vec_uniprot", "modality": "protein sequence / protein representation from PROBE human UniProt archive", "species": "Homo sapiens", "original_identifier_type": "UniProt accession", diff --git a/data/embeddings/probe_hmmer/metadata.json b/data/embeddings/probe_hmmer/metadata.json index 9dbe79eb0925a83ab4c715ddfd67101a92841594..09a2f7f907c65d8a95eda1dfe4502c3010dc4c74 100644 --- a/data/embeddings/probe_hmmer/metadata.json +++ b/data/embeddings/probe_hmmer/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "probe_hmmer", - "display_name": "probe_hmmer_v1_1", + "display_name": "hmmer", "modality": "protein sequence / protein representation from PROBE human UniProt archive", "species": "Homo sapiens", "original_identifier_type": "UniProt accession", diff --git a/data/embeddings/probe_ksep/metadata.json b/data/embeddings/probe_ksep/metadata.json index 14ff568347798eeb6f8833903e027eee0cdc6010..d76addf3812d7518e95150818f66ab720fe203fd 100644 --- a/data/embeddings/probe_ksep/metadata.json +++ b/data/embeddings/probe_ksep/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "probe_ksep", - "display_name": "probe_ksep_v1_1", + "display_name": "ksep", "modality": "protein sequence / protein representation from PROBE human UniProt archive", "species": "Homo sapiens", "original_identifier_type": "UniProt accession", diff --git a/data/embeddings/probe_learned_vec/metadata.json b/data/embeddings/probe_learned_vec/metadata.json index 449cbb3433d4e513f037d5c0b993d45b2ecdc676..9510c0955138c871ebafd70470ab3c2fedcf986e 100644 --- a/data/embeddings/probe_learned_vec/metadata.json +++ b/data/embeddings/probe_learned_vec/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "probe_learned_vec", - "display_name": "probe_learned_vec_v1_1", + "display_name": "learned_vec", "modality": "protein sequence / protein representation from PROBE human UniProt archive", "species": "Homo sapiens", "original_identifier_type": "UniProt accession", diff --git a/data/embeddings/probe_mut2vec/metadata.json b/data/embeddings/probe_mut2vec/metadata.json index 891b54b22da7b67213d03a0151c2d03af539762a..67475c0eecc119345f82227f757f061543b25434 100644 --- a/data/embeddings/probe_mut2vec/metadata.json +++ b/data/embeddings/probe_mut2vec/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "probe_mut2vec", - "display_name": "probe_mut2vec_v1_1", + "display_name": "mut2vec", "modality": "protein sequence / protein representation from PROBE human UniProt archive", "species": "Homo sapiens", "original_identifier_type": "UniProt accession", diff --git a/data/embeddings/probe_pfam/metadata.json b/data/embeddings/probe_pfam/metadata.json index f88f450fc6d694c9865f18ffce0316ff2150ea25..19d69439b11450eda3ad68c6ec4bb491b0a8d6fd 100644 --- a/data/embeddings/probe_pfam/metadata.json +++ b/data/embeddings/probe_pfam/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "probe_pfam", - "display_name": "probe_pfam_v1_1", + "display_name": "pfam", "modality": "protein sequence / protein representation from PROBE human UniProt archive", "species": "Homo sapiens", "original_identifier_type": "UniProt accession", diff --git a/data/embeddings/probe_protvec/metadata.json b/data/embeddings/probe_protvec/metadata.json index b40defdd2f6f641d2ef9b8b63d9e2bcbaa59ef90..5db0b76bbe182b6e10a9d538c943e3325e2d2a59 100644 --- a/data/embeddings/probe_protvec/metadata.json +++ b/data/embeddings/probe_protvec/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "probe_protvec", - "display_name": "probe_protvec_v1_1", + "display_name": "protvec", "modality": "protein sequence / protein representation from PROBE human UniProt archive", "species": "Homo sapiens", "original_identifier_type": "UniProt accession", diff --git a/data/embeddings/probe_seqvec/metadata.json b/data/embeddings/probe_seqvec/metadata.json index 8cdf64aa96777e901c9f7edc21c26bab75cf0e34..3f3ae52923578de0acf838bde822c0657076aea2 100644 --- a/data/embeddings/probe_seqvec/metadata.json +++ b/data/embeddings/probe_seqvec/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "probe_seqvec", - "display_name": "probe_seqvec_v1_1", + "display_name": "seqvec", "modality": "protein sequence / protein representation from PROBE human UniProt archive", "species": "Homo sapiens", "original_identifier_type": "UniProt accession", diff --git a/data/embeddings/probe_t5/metadata.json b/data/embeddings/probe_t5/metadata.json index 6e7a5fda4e0bddca1df7331a769a4a095bbd4542..89d1345f43998daea6ef85fdf5c5d28dbf7fb5d8 100644 --- a/data/embeddings/probe_t5/metadata.json +++ b/data/embeddings/probe_t5/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "probe_t5", - "display_name": "probe_t5_v1_1", + "display_name": "t5", "modality": "protein sequence / protein representation from PROBE human UniProt archive", "species": "Homo sapiens", "original_identifier_type": "UniProt accession", diff --git a/data/embeddings/probe_tcga_embedding/metadata.json b/data/embeddings/probe_tcga_embedding/metadata.json index 9ddc347477a347b892db8ce00972f834a10d940c..979de1a0b85f4536073bca7751130b59e9c1ed29 100644 --- a/data/embeddings/probe_tcga_embedding/metadata.json +++ b/data/embeddings/probe_tcga_embedding/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "probe_tcga_embedding", - "display_name": "probe_tcga_embedding_v1_1", + "display_name": "tcga_embedding", "modality": "protein sequence / protein representation from PROBE human UniProt archive", "species": "Homo sapiens", "original_identifier_type": "UniProt accession", diff --git a/data/embeddings/probe_unirep/metadata.json b/data/embeddings/probe_unirep/metadata.json index 72c310bcbf9d552c75db6c1e597a695da65185e9..4bf1dc91c9819751b6919d547e8abf45ee21981e 100644 --- a/data/embeddings/probe_unirep/metadata.json +++ b/data/embeddings/probe_unirep/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "probe_unirep", - "display_name": "probe_unirep_v1_1", + "display_name": "unirep", "modality": "protein sequence / protein representation from PROBE human UniProt archive", "species": "Homo sapiens", "original_identifier_type": "UniProt accession", diff --git a/data/embeddings/probe_xlnet/metadata.json b/data/embeddings/probe_xlnet/metadata.json index febbdb3cd34de5209601f6f78928a5abf1b44b4c..db54f5964999ec3eb964f5b2b7c0a299138da6af 100644 --- a/data/embeddings/probe_xlnet/metadata.json +++ b/data/embeddings/probe_xlnet/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "probe_xlnet", - "display_name": "probe_xlnet_v1_1", + "display_name": "xlnet", "modality": "protein sequence / protein representation from PROBE human UniProt archive", "species": "Homo sapiens", "original_identifier_type": "UniProt accession", diff --git a/data/embeddings/pubmedbert_gene_protein_summary/metadata.json b/data/embeddings/pubmedbert_gene_protein_summary/metadata.json index f1474b838c6a03b8e932b33dbf90145e34692612..de072c86deee20985a9c17df57cdfbc35a600d7e 100644 --- a/data/embeddings/pubmedbert_gene_protein_summary/metadata.json +++ b/data/embeddings/pubmedbert_gene_protein_summary/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "pubmedbert_gene_protein_summary", - "display_name": "PubMedBERT-GeneProteinSummary-v1.1", + "display_name": "PubMedBERT-GeneProteinSummary", "modality": "literature_text_gene_summary", "species": "Homo sapiens", "n_genes": 19168, diff --git a/data/embeddings/rnafm_full_transcript/metadata.json b/data/embeddings/rnafm_full_transcript/metadata.json index 05f1cced42268dfa4953a94345a2d61d43c143e5..9dffc9bbd1982b5047b2d941242911c8c573e74a 100644 --- a/data/embeddings/rnafm_full_transcript/metadata.json +++ b/data/embeddings/rnafm_full_transcript/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "rnafm_full_transcript", - "display_name": "rnafm_full_transcript_v1_1", + "display_name": "rnafm_full_transcript", "species": "Homo sapiens", "n_genes": 19976, "n_dimensions": 640, diff --git a/data/embeddings/scfoundation_gene_pos/metadata.json b/data/embeddings/scfoundation_gene_pos/metadata.json index 8d70bfb200ba891c33b69bf13696c5a07c543abd..ec578dd5d7454d41ac7d167e8ca36bbabffd06b3 100644 --- a/data/embeddings/scfoundation_gene_pos/metadata.json +++ b/data/embeddings/scfoundation_gene_pos/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "scfoundation_gene_pos", - "display_name": "scFoundation-gene-pos-v1.1", + "display_name": "scFoundation-gene-pos", "modality": "single_cell_expression_foundation_model / learned gene identity-position embedding", "species": "Homo sapiens", "original_identifier_type": "scFoundation OS_scRNA_gene_index gene symbol", diff --git a/data/embeddings/scgpt_pancancer/metadata.json b/data/embeddings/scgpt_pancancer/metadata.json index dd81d191e977d6a791d08a89dc24bab6ad569b94..b0251eb1aca845ef2e6a66e21e9d633a7539da68 100644 --- a/data/embeddings/scgpt_pancancer/metadata.json +++ b/data/embeddings/scgpt_pancancer/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "scgpt_pancancer", - "display_name": "scgpt_pancancer_v1_1", + "display_name": "scgpt_pancancer", "species": "Homo sapiens", "original_identifier_type": "gene symbol from scGPT vocabulary", "n_genes": 19071, diff --git a/data/embeddings/scgpt_whole_human/metadata.json b/data/embeddings/scgpt_whole_human/metadata.json index 89b9c7dc4c8228ab6dfcf624894deec2e599edbf..e8f0922bd9f767bd0b5e908848c8c730cec1fb2c 100644 --- a/data/embeddings/scgpt_whole_human/metadata.json +++ b/data/embeddings/scgpt_whole_human/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "scgpt_whole_human", - "display_name": "scGPT-whole-human-v1.1", + "display_name": "scGPT-whole-human", "modality": "single_cell_expression_foundation_model", "species": "Homo sapiens", "original_identifier_type": "scGPT vocab gene symbol", diff --git a/data/embeddings/scprint_medium_v1_5_gene/metadata.json b/data/embeddings/scprint_medium_v1_5_gene/metadata.json index 86469d87c53995bf96cb2b35a9648fa64b1cdb43..1a9ef1d49df47dcaabc4d2ebf5a4936873d435a5 100644 --- a/data/embeddings/scprint_medium_v1_5_gene/metadata.json +++ b/data/embeddings/scprint_medium_v1_5_gene/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "scprint_medium_v1_5_gene", - "display_name": "scPRINT-medium-v1.5-gene-v1.1", + "display_name": "scPRINT-medium-v1.5-gene", "modality": "single_cell_expression_foundation_model / learned gene-token embedding", "species": "Homo sapiens", "original_identifier_type": "scPRINT checkpoint hyper_parameters genes Ensembl gene ID", diff --git a/data/embeddings/spliceai_canonical_splice_site_profile/metadata.json b/data/embeddings/spliceai_canonical_splice_site_profile/metadata.json index 81daab66d1b8438eaf739bf181b880927f67541c..3d336add4a394817469dfd9ba1b01dc33a6d4da5 100644 --- a/data/embeddings/spliceai_canonical_splice_site_profile/metadata.json +++ b/data/embeddings/spliceai_canonical_splice_site_profile/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "spliceai_canonical_splice_site_profile", - "display_name": "SpliceAI-canonical-splice-site-profile-zscore-v1.1", + "display_name": "SpliceAI-canonical-splice-site-profile-zscore", "modality": "splicing sequence model / canonical transcript splice-site profiles", "species": "Homo sapiens", "n_genes": 20097, diff --git a/data/embeddings/uce_33l/metadata.json b/data/embeddings/uce_33l/metadata.json index 53779a0eb0fe3b4ff9e8680b6d26fbc878cb4109..83b859306aab9511e20e641b2fce762fd7fc7da7 100644 --- a/data/embeddings/uce_33l/metadata.json +++ b/data/embeddings/uce_33l/metadata.json @@ -1,6 +1,6 @@ { "embedding_id": "uce_33l", - "display_name": "UCE-33L-v1.1", + "display_name": "UCE-33L", "modality": "single_cell_expression_foundation_model / protein-informed gene-token embedding", "species": "Homo sapiens", "original_identifier_type": "UCE species_chrom human gene symbol",