Oct 21 17 days ago 16:15 Remove verified synthetic live test geh_live_smoke_20261021_c7a43e 15:52 Accept geh_live_smoke_20261021_c7a43e from a validated Hugging Face PR system HF Staff Aug 26 12:34 Update references for Gene Embedding Hub rename Aug 20 12:20 Delete data/embeddings/probe_ksep 12:19 Delete data/embeddings/probe_pfam 12:14 Delete data/embeddings/hpo_ancestor_tfidf_svd256 12:12 Delete data/embeddings/cmap_gse106127_cgs_mean_landmark978_zscore 09:32 Add HPO Ancestor-Propagated TF-IDF SVD-256 embedding 09:20 Add GO Biological Process TF-IDF SVD-256 embedding 08:57 Add DRKG TransE embedding Aug 19 14:11 Add STRING WaveGC and STRING GNN embeddings Aug 16 21:52 Delete data/community_contributions/community_manifest.csv 21:51 Delete data/community_contributions/community_registry.json 21:50 Delete scripts Aug 4 12:35 Synchronize core display names with Space Set the display_name field in all 68 core embedding metadata.json files to the corresponding catalog name in Gene-Embeddings-Staging. This carries over the v1.1/v1_1 and PROBE-prefix display cleanups without changing stable IDs, paths, matrices, gene tables, or other metadata. The update is applied to current Dataset main, preserving every other field and all unrelated repository changes. Aug 2 10:22 Remove external-reference smoke test Remove only external_reference_smoke_20260727_v1 and its generated registry, manifest, catalog, summary, and target-specific path references. Leave the external source Dataset untouched. 09:54 Normalize and restore PROBE Gene2Vec package Restore the complete probe_gene2vec_uniprot package. Reduce genes.tsv to its ordered Ensembl gene ID column, compact metadata.json, update README provenance, and restore embeddings.npz byte-identically. Jul 30 12:52 Refine embedding READMEs and optional metadata Remove obsolete genes.tsv column sections from 67 embedding READMEs and add 23 verified optional metadata values across 18 embeddings. probe_gene2vec_uniprot remains unchanged. 12:31 Normalize genes, metadata, and READMEs for 67 embeddings Reduce genes.tsv files to the ordered ensembl_gene_id column, compact metadata.json files, and preserve removed legacy metadata in each README.md. probe_gene2vec_uniprot is unchanged. Jul 29 14:36 Publish submissions/external_reference_smoke_20260727_v1.yaml system HF Staff 11:54 Keep only the final community smoke test 11:43 Delete data/community_contributions/hf_portal_central_smoke_20260728_v1 11:43 Delete data/community_contributions/hf_portal_category_modality_smoke_20260728_v3 11:42 Delete data/community_validation 11:40 Accept hf_portal_root_upload_smoke_20260729_1328_v1 from HF PR #8 system HF Staff 09:43 Initialize production community contributions Jul 16 09:41 Rename data/embeddings/genept_model3_gene_protein_conservative/metadata.json to data/embeddings/genept_model3_gene_protein/metadata.json 09:41 Rename data/embeddings/genept_ada_conservative/metadata.json to data/embeddings/genept_ada/metadata.json 09:40 Delete data/embeddings/genept_model3_gene_protein/metadata.json 09:40 Delete data/embeddings/genept_ada/metadata.json 09:38 Synchronize embedding metadata and add package QC fields Jul 15 15:33 Update README.md 15:32 Update README.md 15:18 Upload README.md 11:24 Update data/embeddings/depmap_crispr_gene_effect_pca256/README.md 11:18 Fix DepMap CRISPR gene-effect PCA256 matrix 09:55 Delete data/manifest.parquet 09:54 Delete data/manifest.csv 09:49 Delete docs 09:48 Delete README.md 09:48 Update data/embeddings/alphagenome_tss1mb_regulatory_tracksummary_pca256/README.md 09:39 Update curated AlphaGenome README documentation: docs/per_embedding_readme_manual_todo.csv 09:39 Update curated AlphaGenome README documentation: data/embeddings/alphagenome_tss1mb_regulatory_tracksummary_pca256/README.md 09:28 Delete docs 09:27 Update data/embeddings/msa_transformer_depth1_uniprot_human/README.md 09:24 Update data/embeddings/biobert_gene_protein_summary/README.md 09:23 Update data/embeddings/pubmedbert_gene_protein_summary/README.md 09:21 Update data/embeddings/biobert_gene_protein_summary/README.md 09:18 Update curated BioBERT PubMedBERT MSA README documentation: docs/per_embedding_readme_manual_todo.csv 09:18 Update curated BioBERT PubMedBERT MSA README documentation: data/embeddings/msa_transformer_depth1_uniprot_human/README.md 
