{ "cells": [ { "cell_type": "markdown", "metadata": {}, "source": [ "## 数据处理:SMILES信息在Gene里,CP里面没有,所以首先在这里实现映射和对齐" ] }, { "cell_type": "code", "execution_count": 1, "metadata": {}, "outputs": [], "source": [ "import numpy as np\n", "import pandas as pd\n", "import matplotlib.pyplot as plt\n", "import seaborn as sns\n", "import os\n", "import h5py\n", "\n", "def load_from_HDF(fname):\n", " \"\"\"Load data from a HDF5 file to a dictionary.\"\"\"\n", " data = dict()\n", " with h5py.File(fname, 'r') as f:\n", " for key in f:\n", " data[key] = np.asarray(f[key])\n", " if isinstance(data[key][0], np.bytes_):\n", " data[key] = data[key].astype(str)\n", " return data" ] }, { "cell_type": "code", "execution_count": 2, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "(113416, 898) (61313, 980)\n" ] }, { "data": { "text/html": [ "
| \n", " | pert_dose | \n", "det_plate | \n", "CPD_SMILES | \n", "221227_x_at | \n", "212345_s_at | \n", "218597_s_at | \n", "217140_s_at | \n", "209253_at | \n", "214404_x_at | \n", "219888_at | \n", "... | \n", "218397_at | \n", "202996_at | \n", "204608_at | \n", "211071_s_at | \n", "203341_at | \n", "202801_at | \n", "206414_s_at | \n", "204978_at | \n", "205379_at | \n", "203897_at | \n", "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | \n", "50.0 | \n", "PAC001_U2OS_6H_X1_B1_UNI4445L | \n", "CC(C)[C@H](CO)Nc1nc(Nc2cc(N)cc(Cl)c2)c2ncn(C(C... | \n", "-0.118505 | \n", "-0.293445 | \n", "-0.294088 | \n", "0.292745 | \n", "-0.145896 | \n", "0.97358 | \n", "0.247915 | \n", "... | \n", "-0.529905 | \n", "0.804992 | \n", "0.430269 | \n", "-0.97559 | \n", "-1.740605 | \n", "0.340382 | \n", "0.498778 | \n", "0.352152 | \n", "0.53591 | \n", "0.52484 | \n", "
| 1 | \n", "12.7 | \n", "PAC001_U2OS_6H_X1_B1_UNI4445L | \n", "Ic1cccc(CSc2nnc(o2)-c2ccncc2)c1 | \n", "0.043264 | \n", "-0.264945 | \n", "-0.000633 | \n", "0.000935 | \n", "0.177604 | \n", "-0.50472 | \n", "0.214315 | \n", "... | \n", "0.228895 | \n", "-0.381308 | \n", "0.556969 | \n", "0.25051 | \n", "-0.025625 | \n", "-0.024428 | \n", "-0.225122 | \n", "0.533052 | \n", "-0.19329 | \n", "-0.25436 | \n", "
| 2 | \n", "50.0 | \n", "PAC001_U2OS_6H_X1_B1_UNI4445L | \n", "Clc1cc(Cl)c(NC(=O)Nc2ccncc2)c(Cl)c1 | \n", "-0.070805 | \n", "0.195755 | \n", "0.004606 | \n", "-0.040855 | \n", "-0.067346 | \n", "-0.19872 | \n", "-0.053195 | \n", "... | \n", "-0.031795 | \n", "-0.051728 | \n", "-0.017741 | \n", "0.05681 | \n", "0.130695 | \n", "0.005919 | \n", "-0.408722 | \n", "-0.057177 | \n", "-0.25699 | \n", "0.31004 | \n", "
| 3 | \n", "16.2 | \n", "PAC001_U2OS_6H_X1_B1_UNI4445L | \n", "COc1ccc(CNC(=O)Nc2ncc(s2)[N+]([O-])=O)cc1 | \n", "0.027165 | \n", "-0.149545 | \n", "0.173113 | \n", "-0.100695 | \n", "-0.309296 | \n", "-0.20782 | \n", "-0.323985 | \n", "... | \n", "-0.013787 | \n", "-0.177608 | \n", "0.219869 | \n", "-0.16129 | \n", "0.365195 | \n", "-0.040848 | \n", "-0.251122 | \n", "0.040732 | \n", "0.17091 | \n", "-0.05144 | \n", "
| 4 | \n", "12.5 | \n", "PAC001_U2OS_6H_X1_B1_UNI4445L | \n", "OC(=O)c1ccc2c3nc4ccccc4n3c(=O)c3cccc1c23 | \n", "0.303294 | \n", "0.254455 | \n", "-0.055418 | \n", "-0.053635 | \n", "0.000455 | \n", "-0.10908 | \n", "0.031425 | \n", "... | \n", "-0.052585 | \n", "-0.196108 | \n", "0.245469 | \n", "0.00784 | \n", "0.093595 | \n", "-0.303418 | \n", "0.474878 | \n", "-0.022947 | \n", "-0.28589 | \n", "0.06423 | \n", "
5 rows × 980 columns
\n", "| \n", " | dose | \n", "Plate | \n", "SMILES | \n", "221227_x_at | \n", "212345_s_at | \n", "218597_s_at | \n", "217140_s_at | \n", "209253_at | \n", "214404_x_at | \n", "219888_at | \n", "... | \n", "218397_at | \n", "202996_at | \n", "204608_at | \n", "211071_s_at | \n", "203341_at | \n", "202801_at | \n", "206414_s_at | \n", "204978_at | \n", "205379_at | \n", "203897_at | \n", "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | \n", "50.0 | \n", "PAC001_U2OS_6H_X1_B1_UNI4445L | \n", "CC(C)[C@H](CO)Nc1nc(Nc2cc(N)cc(Cl)c2)c2ncn(C(C... | \n", "-0.118505 | \n", "-0.293445 | \n", "-0.294088 | \n", "0.292745 | \n", "-0.145896 | \n", "0.97358 | \n", "0.247915 | \n", "... | \n", "-0.529905 | \n", "0.804992 | \n", "0.430269 | \n", "-0.97559 | \n", "-1.740605 | \n", "0.340382 | \n", "0.498778 | \n", "0.352152 | \n", "0.53591 | \n", "0.52484 | \n", "
| 1 | \n", "12.7 | \n", "PAC001_U2OS_6H_X1_B1_UNI4445L | \n", "Ic1cccc(CSc2nnc(o2)-c2ccncc2)c1 | \n", "0.043264 | \n", "-0.264945 | \n", "-0.000633 | \n", "0.000935 | \n", "0.177604 | \n", "-0.50472 | \n", "0.214315 | \n", "... | \n", "0.228895 | \n", "-0.381308 | \n", "0.556969 | \n", "0.25051 | \n", "-0.025625 | \n", "-0.024428 | \n", "-0.225122 | \n", "0.533052 | \n", "-0.19329 | \n", "-0.25436 | \n", "
| 2 | \n", "50.0 | \n", "PAC001_U2OS_6H_X1_B1_UNI4445L | \n", "Clc1cc(Cl)c(NC(=O)Nc2ccncc2)c(Cl)c1 | \n", "-0.070805 | \n", "0.195755 | \n", "0.004606 | \n", "-0.040855 | \n", "-0.067346 | \n", "-0.19872 | \n", "-0.053195 | \n", "... | \n", "-0.031795 | \n", "-0.051728 | \n", "-0.017741 | \n", "0.05681 | \n", "0.130695 | \n", "0.005919 | \n", "-0.408722 | \n", "-0.057177 | \n", "-0.25699 | \n", "0.31004 | \n", "
| 3 | \n", "16.2 | \n", "PAC001_U2OS_6H_X1_B1_UNI4445L | \n", "COc1ccc(CNC(=O)Nc2ncc(s2)[N+]([O-])=O)cc1 | \n", "0.027165 | \n", "-0.149545 | \n", "0.173113 | \n", "-0.100695 | \n", "-0.309296 | \n", "-0.20782 | \n", "-0.323985 | \n", "... | \n", "-0.013787 | \n", "-0.177608 | \n", "0.219869 | \n", "-0.16129 | \n", "0.365195 | \n", "-0.040848 | \n", "-0.251122 | \n", "0.040732 | \n", "0.17091 | \n", "-0.05144 | \n", "
| 4 | \n", "12.5 | \n", "PAC001_U2OS_6H_X1_B1_UNI4445L | \n", "OC(=O)c1ccc2c3nc4ccccc4n3c(=O)c3cccc1c23 | \n", "0.303294 | \n", "0.254455 | \n", "-0.055418 | \n", "-0.053635 | \n", "0.000455 | \n", "-0.10908 | \n", "0.031425 | \n", "... | \n", "-0.052585 | \n", "-0.196108 | \n", "0.245469 | \n", "0.00784 | \n", "0.093595 | \n", "-0.303418 | \n", "0.474878 | \n", "-0.022947 | \n", "-0.28589 | \n", "0.06423 | \n", "
5 rows × 980 columns
\n", "| \n", " | Metadata_mmoles_per_liter2 | \n", "SMILES | \n", "Metadata_Plate | \n", "Cells_AreaShape_Compactness | \n", "Cells_AreaShape_EulerNumber | \n", "Cells_AreaShape_Extent | \n", "Cells_AreaShape_FormFactor | \n", "Cells_AreaShape_MaxFeretDiameter | \n", "Cells_AreaShape_MaximumRadius | \n", "Cells_AreaShape_Solidity | \n", "... | \n", "Nuclei_Texture_SumEntropy_DNA_5_0 | \n", "Nuclei_Texture_SumEntropy_ER_3_0 | \n", "Nuclei_Texture_SumEntropy_Mito_3_0 | \n", "Nuclei_Texture_SumEntropy_RNA_5_0 | \n", "Nuclei_Texture_SumVariance_ER_3_0 | \n", "Nuclei_Texture_SumVariance_Mito_5_0 | \n", "Nuclei_Texture_SumVariance_RNA_10_0 | \n", "Nuclei_Texture_Variance_AGP_5_0 | \n", "Nuclei_Texture_Variance_ER_5_0 | \n", "Nuclei_Texture_Variance_RNA_5_0 | \n", "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | \n", "6.05 | \n", "CCCOc1cc(N)ccc1C(=O)OCCN(CC)CC | \n", "24277 | \n", "0.256710 | \n", "NaN | \n", "-0.114990 | \n", "-0.237090 | \n", "0.615594 | \n", "0.550434 | \n", "0.072795 | \n", "... | \n", "0.090021 | \n", "0.375747 | \n", "-0.010427 | \n", "0.118997 | \n", "-0.156442 | \n", "-0.018014 | \n", "-0.024573 | \n", "-0.383890 | \n", "-0.199967 | \n", "-0.075658 | \n", "
| 1 | \n", "10.00 | \n", "COc1cc(C)cc(OC)c1[C@@H]1C=C(C)CC[C@H]1C(C)=C | \n", "24277 | \n", "0.050962 | \n", "NaN | \n", "0.051053 | \n", "-0.033733 | \n", "0.271953 | \n", "0.172714 | \n", "0.145941 | \n", "... | \n", "-0.030338 | \n", "0.390687 | \n", "-0.058560 | \n", "0.065822 | \n", "-0.113721 | \n", "-0.089807 | \n", "-0.041392 | \n", "-0.248967 | \n", "-0.126183 | \n", "0.018563 | \n", "
| 2 | \n", "10.00 | \n", "COc1cc(O)cc(\\C=C\\c2ccccc2)c1 | \n", "24277 | \n", "-0.098185 | \n", "NaN | \n", "0.044212 | \n", "0.164668 | \n", "0.011985 | \n", "0.127098 | \n", "0.094736 | \n", "... | \n", "0.102946 | \n", "0.279148 | \n", "0.029891 | \n", "0.079777 | \n", "-0.007979 | \n", "0.081155 | \n", "-0.089633 | \n", "0.043140 | \n", "-0.034355 | \n", "0.052914 | \n", "
| 3 | \n", "10.00 | \n", "COc1c(O)cc2C(=O)O[C@H]3[C@@H](O)[C@H](O)[C@@H]... | \n", "24277 | \n", "0.410722 | \n", "NaN | \n", "-0.236208 | \n", "-0.055084 | \n", "0.694648 | \n", "0.516785 | \n", "0.154239 | \n", "... | \n", "0.470516 | \n", "0.214792 | \n", "0.015408 | \n", "0.339100 | \n", "-0.034251 | \n", "-0.047597 | \n", "0.103611 | \n", "-0.139579 | \n", "-0.042241 | \n", "0.249977 | \n", "
| 4 | \n", "4.39 | \n", "CCOc1ccc2ccccc2c1C(=O)N[C@H]1[C@H]2SC(C)(C)[C@... | \n", "24277 | \n", "0.248559 | \n", "NaN | \n", "-0.020058 | \n", "0.085772 | \n", "0.678742 | \n", "0.671897 | \n", "0.214587 | \n", "... | \n", "0.671790 | \n", "0.424186 | \n", "0.118873 | \n", "0.415623 | \n", "0.257598 | \n", "0.193370 | \n", "0.238471 | \n", "-0.033797 | \n", "0.080018 | \n", "0.335890 | \n", "
5 rows × 897 columns
\n", "| \n", " | dose | \n", "SMILES | \n", "Plate | \n", "Cells_AreaShape_Compactness | \n", "Cells_AreaShape_EulerNumber | \n", "Cells_AreaShape_Extent | \n", "Cells_AreaShape_FormFactor | \n", "Cells_AreaShape_MaxFeretDiameter | \n", "Cells_AreaShape_MaximumRadius | \n", "Cells_AreaShape_Solidity | \n", "... | \n", "Nuclei_Texture_SumEntropy_DNA_5_0 | \n", "Nuclei_Texture_SumEntropy_ER_3_0 | \n", "Nuclei_Texture_SumEntropy_Mito_3_0 | \n", "Nuclei_Texture_SumEntropy_RNA_5_0 | \n", "Nuclei_Texture_SumVariance_ER_3_0 | \n", "Nuclei_Texture_SumVariance_Mito_5_0 | \n", "Nuclei_Texture_SumVariance_RNA_10_0 | \n", "Nuclei_Texture_Variance_AGP_5_0 | \n", "Nuclei_Texture_Variance_ER_5_0 | \n", "Nuclei_Texture_Variance_RNA_5_0 | \n", "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | \n", "6.05 | \n", "CCCOc1cc(N)ccc1C(=O)OCCN(CC)CC | \n", "24277 | \n", "0.256710 | \n", "NaN | \n", "-0.114990 | \n", "-0.237090 | \n", "0.615594 | \n", "0.550434 | \n", "0.072795 | \n", "... | \n", "0.090021 | \n", "0.375747 | \n", "-0.010427 | \n", "0.118997 | \n", "-0.156442 | \n", "-0.018014 | \n", "-0.024573 | \n", "-0.383890 | \n", "-0.199967 | \n", "-0.075658 | \n", "
| 1 | \n", "10.00 | \n", "COc1cc(C)cc(OC)c1[C@@H]1C=C(C)CC[C@H]1C(C)=C | \n", "24277 | \n", "0.050962 | \n", "NaN | \n", "0.051053 | \n", "-0.033733 | \n", "0.271953 | \n", "0.172714 | \n", "0.145941 | \n", "... | \n", "-0.030338 | \n", "0.390687 | \n", "-0.058560 | \n", "0.065822 | \n", "-0.113721 | \n", "-0.089807 | \n", "-0.041392 | \n", "-0.248967 | \n", "-0.126183 | \n", "0.018563 | \n", "
| 2 | \n", "10.00 | \n", "COc1cc(O)cc(\\C=C\\c2ccccc2)c1 | \n", "24277 | \n", "-0.098185 | \n", "NaN | \n", "0.044212 | \n", "0.164668 | \n", "0.011985 | \n", "0.127098 | \n", "0.094736 | \n", "... | \n", "0.102946 | \n", "0.279148 | \n", "0.029891 | \n", "0.079777 | \n", "-0.007979 | \n", "0.081155 | \n", "-0.089633 | \n", "0.043140 | \n", "-0.034355 | \n", "0.052914 | \n", "
| 3 | \n", "10.00 | \n", "COc1c(O)cc2C(=O)O[C@H]3[C@@H](O)[C@H](O)[C@@H]... | \n", "24277 | \n", "0.410722 | \n", "NaN | \n", "-0.236208 | \n", "-0.055084 | \n", "0.694648 | \n", "0.516785 | \n", "0.154239 | \n", "... | \n", "0.470516 | \n", "0.214792 | \n", "0.015408 | \n", "0.339100 | \n", "-0.034251 | \n", "-0.047597 | \n", "0.103611 | \n", "-0.139579 | \n", "-0.042241 | \n", "0.249977 | \n", "
| 4 | \n", "4.39 | \n", "CCOc1ccc2ccccc2c1C(=O)N[C@H]1[C@H]2SC(C)(C)[C@... | \n", "24277 | \n", "0.248559 | \n", "NaN | \n", "-0.020058 | \n", "0.085772 | \n", "0.678742 | \n", "0.671897 | \n", "0.214587 | \n", "... | \n", "0.671790 | \n", "0.424186 | \n", "0.118873 | \n", "0.415623 | \n", "0.257598 | \n", "0.193370 | \n", "0.238471 | \n", "-0.033797 | \n", "0.080018 | \n", "0.335890 | \n", "
5 rows × 897 columns
\n", "| \n", " | dose | \n", "Plate | \n", "SMILES | \n", "221227_x_at | \n", "212345_s_at | \n", "218597_s_at | \n", "217140_s_at | \n", "209253_at | \n", "214404_x_at | \n", "219888_at | \n", "... | \n", "218397_at | \n", "202996_at | \n", "204608_at | \n", "211071_s_at | \n", "203341_at | \n", "202801_at | \n", "206414_s_at | \n", "204978_at | \n", "205379_at | \n", "203897_at | \n", "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | \n", "50.0 | \n", "PAC001_U2OS_6H_X1_B1_UNI4445L | \n", "CC(C)[C@H](CO)Nc1nc(Nc2cc(N)cc(Cl)c2)c2ncn(C(C... | \n", "-0.118505 | \n", "-0.293445 | \n", "-0.294088 | \n", "0.292745 | \n", "-0.145896 | \n", "0.97358 | \n", "0.247915 | \n", "... | \n", "-0.529905 | \n", "0.804992 | \n", "0.430269 | \n", "-0.97559 | \n", "-1.740605 | \n", "0.340382 | \n", "0.498778 | \n", "0.352152 | \n", "0.53591 | \n", "0.52484 | \n", "
| 1 | \n", "12.7 | \n", "PAC001_U2OS_6H_X1_B1_UNI4445L | \n", "Ic1cccc(CSc2nnc(o2)-c2ccncc2)c1 | \n", "0.043264 | \n", "-0.264945 | \n", "-0.000633 | \n", "0.000935 | \n", "0.177604 | \n", "-0.50472 | \n", "0.214315 | \n", "... | \n", "0.228895 | \n", "-0.381308 | \n", "0.556969 | \n", "0.25051 | \n", "-0.025625 | \n", "-0.024428 | \n", "-0.225122 | \n", "0.533052 | \n", "-0.19329 | \n", "-0.25436 | \n", "
| 2 | \n", "50.0 | \n", "PAC001_U2OS_6H_X1_B1_UNI4445L | \n", "Clc1cc(Cl)c(NC(=O)Nc2ccncc2)c(Cl)c1 | \n", "-0.070805 | \n", "0.195755 | \n", "0.004606 | \n", "-0.040855 | \n", "-0.067346 | \n", "-0.19872 | \n", "-0.053195 | \n", "... | \n", "-0.031795 | \n", "-0.051728 | \n", "-0.017741 | \n", "0.05681 | \n", "0.130695 | \n", "0.005919 | \n", "-0.408722 | \n", "-0.057177 | \n", "-0.25699 | \n", "0.31004 | \n", "
| 3 | \n", "16.2 | \n", "PAC001_U2OS_6H_X1_B1_UNI4445L | \n", "COc1ccc(CNC(=O)Nc2ncc(s2)[N+]([O-])=O)cc1 | \n", "0.027165 | \n", "-0.149545 | \n", "0.173113 | \n", "-0.100695 | \n", "-0.309296 | \n", "-0.20782 | \n", "-0.323985 | \n", "... | \n", "-0.013787 | \n", "-0.177608 | \n", "0.219869 | \n", "-0.16129 | \n", "0.365195 | \n", "-0.040848 | \n", "-0.251122 | \n", "0.040732 | \n", "0.17091 | \n", "-0.05144 | \n", "
| 4 | \n", "12.5 | \n", "PAC001_U2OS_6H_X1_B1_UNI4445L | \n", "OC(=O)c1ccc2c3nc4ccccc4n3c(=O)c3cccc1c23 | \n", "0.303294 | \n", "0.254455 | \n", "-0.055418 | \n", "-0.053635 | \n", "0.000455 | \n", "-0.10908 | \n", "0.031425 | \n", "... | \n", "-0.052585 | \n", "-0.196108 | \n", "0.245469 | \n", "0.00784 | \n", "0.093595 | \n", "-0.303418 | \n", "0.474878 | \n", "-0.022947 | \n", "-0.28589 | \n", "0.06423 | \n", "
5 rows × 980 columns
\n", "| \n", " | SMILES | \n", "Metadata_moa | \n", "Metadata_mmoles_per_liter2 | \n", "Metadata_Plate | \n", "Cells_AreaShape_Compactness | \n", "Cells_AreaShape_Extent | \n", "Cells_AreaShape_FormFactor | \n", "Cells_AreaShape_MaxFeretDiameter | \n", "Cells_AreaShape_MaximumRadius | \n", "Cells_AreaShape_Solidity | \n", "... | \n", "Nuclei_Texture_SumEntropy_DNA_5_0 | \n", "Nuclei_Texture_SumEntropy_ER_3_0 | \n", "Nuclei_Texture_SumEntropy_Mito_3_0 | \n", "Nuclei_Texture_SumEntropy_RNA_5_0 | \n", "Nuclei_Texture_SumVariance_ER_3_0 | \n", "Nuclei_Texture_SumVariance_Mito_5_0 | \n", "Nuclei_Texture_SumVariance_RNA_10_0 | \n", "Nuclei_Texture_Variance_AGP_5_0 | \n", "Nuclei_Texture_Variance_ER_5_0 | \n", "Nuclei_Texture_Variance_RNA_5_0 | \n", "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | \n", "CCCOc1cc(N)ccc1C(=O)OCCN(CC)CC | \n", "local anesthetic | \n", "6.05 | \n", "24277 | \n", "1.798728 | \n", "-1.067827 | \n", "-1.390869 | \n", "2.342674 | \n", "2.191147 | \n", "0.603093 | \n", "... | \n", "0.554060 | \n", "2.349977 | \n", "0.060778 | \n", "0.611735 | \n", "-0.527389 | \n", "0.040127 | \n", "-0.110624 | \n", "-2.284495 | \n", "-1.438048 | \n", "-0.403544 | \n", "
| 1 | \n", "COc1cc(C)cc(OC)c1[C@@H]1C=C(C)CC[C@H]1C(C)=C | \n", "cannabinoid receptor antagonist | \n", "10.00 | \n", "24277 | \n", "0.303087 | \n", "0.574654 | \n", "-0.184627 | \n", "0.967908 | \n", "0.606741 | \n", "1.175119 | \n", "... | \n", "0.158181 | \n", "2.434973 | \n", "-0.133689 | \n", "0.383268 | \n", "-0.312258 | \n", "-0.275593 | \n", "-0.232614 | \n", "-1.437120 | \n", "-0.858000 | \n", "0.206142 | \n", "
| 2 | \n", "COc1cc(O)cc(\\C=C\\c2ccccc2)c1 | \n", "None | \n", "10.00 | \n", "24277 | \n", "-0.781105 | \n", "0.506980 | \n", "0.992217 | \n", "-0.072119 | \n", "0.415398 | \n", "0.774680 | \n", "... | \n", "0.596572 | \n", "1.800434 | \n", "0.223677 | \n", "0.443226 | \n", "0.220224 | \n", "0.476239 | \n", "-0.582515 | \n", "0.397441 | \n", "-0.136095 | \n", "0.428414 | \n", "
| 3 | \n", "COc1c(O)cc2C(=O)O[C@H]3[C@@H](O)[C@H](O)[C@@H]... | \n", "interleukin inhibitor | \n", "10.00 | \n", "24277 | \n", "2.918283 | \n", "-2.266905 | \n", "-0.311273 | \n", "2.658938 | \n", "2.050004 | \n", "1.240017 | \n", "... | \n", "1.805571 | \n", "1.434323 | \n", "0.165160 | \n", "1.557404 | \n", "0.087928 | \n", "-0.089972 | \n", "0.819127 | \n", "-0.750117 | \n", "-0.198089 | \n", "1.703560 | \n", "
| 4 | \n", "CCOc1ccc2ccccc2c1C(=O)N[C@H]1[C@H]2SC(C)(C)[C@... | \n", "bacterial cell wall synthesis inhibitor | \n", "4.39 | \n", "24277 | \n", "1.739474 | \n", "-0.128771 | \n", "0.524232 | \n", "2.595305 | \n", "2.700646 | \n", "1.711957 | \n", "... | \n", "2.467593 | \n", "2.625543 | \n", "0.583185 | \n", "1.886184 | \n", "1.557583 | \n", "0.969722 | \n", "1.797292 | \n", "-0.085759 | \n", "0.763047 | \n", "2.259479 | \n", "
5 rows × 745 columns
\n", "| \n", " | dose | \n", "Plate | \n", "SMILES | \n", "221227_x_at | \n", "212345_s_at | \n", "218597_s_at | \n", "217140_s_at | \n", "209253_at | \n", "214404_x_at | \n", "219888_at | \n", "... | \n", "218397_at | \n", "202996_at | \n", "204608_at | \n", "211071_s_at | \n", "203341_at | \n", "202801_at | \n", "206414_s_at | \n", "204978_at | \n", "205379_at | \n", "203897_at | \n", "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | \n", "50.0 | \n", "PAC001_U2OS_6H_X1_B1_UNI4445L | \n", "CC(C)[C@H](CO)Nc1nc(Nc2cc(N)cc(Cl)c2)c2ncn(C(C... | \n", "-0.718409 | \n", "-1.412662 | \n", "-1.777799 | \n", "1.890969 | \n", "-0.686329 | \n", "3.356343 | \n", "1.075315 | \n", "... | \n", "-1.717976 | \n", "3.902234 | \n", "1.456811 | \n", "-3.779831 | \n", "-10.000000 | \n", "1.271066 | \n", "2.485811 | \n", "1.176754 | \n", "2.000332 | \n", "2.497287 | \n", "
| 1 | \n", "12.7 | \n", "PAC001_U2OS_6H_X1_B1_UNI4445L | \n", "Ic1cccc(CSc2nnc(-c3ccncc3)o2)c1 | \n", "0.253430 | \n", "-1.271711 | \n", "-0.036673 | \n", "0.028366 | \n", "0.739463 | \n", "-1.707844 | \n", "0.935368 | \n", "... | \n", "0.671731 | \n", "-1.828476 | \n", "1.888788 | \n", "0.915792 | \n", "-0.224897 | \n", "-0.052488 | \n", "-1.118856 | \n", "1.812681 | \n", "-0.634178 | \n", "-1.210292 | \n", "
| 2 | \n", "50.0 | \n", "PAC001_U2OS_6H_X1_B1_UNI4445L | \n", "O=C(Nc1ccncc1)Nc1c(Cl)cc(Cl)cc1Cl | \n", "-0.431849 | \n", "1.006752 | \n", "-0.005589 | \n", "-0.238377 | \n", "-0.340128 | \n", "-0.659585 | \n", "-0.178832 | \n", "... | \n", "-0.149266 | \n", "-0.236360 | \n", "-0.070655 | \n", "0.173975 | \n", "0.885048 | \n", "0.057613 | \n", "-2.033094 | \n", "-0.262186 | \n", "-0.864318 | \n", "1.475228 | \n", "
| 3 | \n", "16.2 | \n", "PAC001_U2OS_6H_X1_B1_UNI4445L | \n", "COc1ccc(CNC(=O)Nc2ncc([N+](=O)[O-])s2)cc1 | \n", "0.156709 | \n", "-0.700982 | \n", "0.994199 | \n", "-0.620332 | \n", "-1.406496 | \n", "-0.690759 | \n", "-1.306693 | \n", "... | \n", "-0.092553 | \n", "-0.844454 | \n", "0.739464 | \n", "-0.661288 | \n", "2.550107 | \n", "-0.112061 | \n", "-1.248323 | \n", "0.082003 | \n", "0.681632 | \n", "-0.244761 | \n", "
| 4 | \n", "12.5 | \n", "PAC001_U2OS_6H_X1_B1_UNI4445L | \n", "O=C(O)c1ccc2c3c1cccc3c(=O)n1c3ccccc3nc21 | \n", "1.815569 | \n", "1.297062 | \n", "-0.361718 | \n", "-0.319951 | \n", "-0.041302 | \n", "-0.352507 | \n", "0.173617 | \n", "... | \n", "-0.214741 | \n", "-0.933822 | \n", "0.826746 | \n", "-0.013567 | \n", "0.621621 | \n", "-1.064682 | \n", "2.366801 | \n", "-0.141855 | \n", "-0.968730 | \n", "0.305618 | \n", "
5 rows × 980 columns
\n", "| \n", " | SMILES | \n", "dose | \n", "Plate | \n", "Cells_AreaShape_Compactness | \n", "Cells_AreaShape_Extent | \n", "Cells_AreaShape_FormFactor | \n", "Cells_AreaShape_MaxFeretDiameter | \n", "Cells_AreaShape_MaximumRadius | \n", "Cells_AreaShape_Solidity | \n", "Cells_AreaShape_Zernike_0_0 | \n", "... | \n", "Nuclei_Texture_SumEntropy_DNA_5_0 | \n", "Nuclei_Texture_SumEntropy_ER_3_0 | \n", "Nuclei_Texture_SumEntropy_Mito_3_0 | \n", "Nuclei_Texture_SumEntropy_RNA_5_0 | \n", "Nuclei_Texture_SumVariance_ER_3_0 | \n", "Nuclei_Texture_SumVariance_Mito_5_0 | \n", "Nuclei_Texture_SumVariance_RNA_10_0 | \n", "Nuclei_Texture_Variance_AGP_5_0 | \n", "Nuclei_Texture_Variance_ER_5_0 | \n", "Nuclei_Texture_Variance_RNA_5_0 | \n", "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | \n", "CCCOc1cc(N)ccc1C(=O)OCCN(CC)CC | \n", "6.05 | \n", "24277 | \n", "1.798728 | \n", "-1.067827 | \n", "-1.390869 | \n", "2.342674 | \n", "2.191147 | \n", "0.603093 | \n", "-1.579134 | \n", "... | \n", "0.554060 | \n", "2.349977 | \n", "0.060778 | \n", "0.611735 | \n", "-0.527389 | \n", "0.040127 | \n", "-0.110624 | \n", "-2.284495 | \n", "-1.438048 | \n", "-0.403544 | \n", "
| 1 | \n", "C=C(C)[C@@H]1CCC(C)=C[C@H]1c1c(OC)cc(C)cc1OC | \n", "10.00 | \n", "24277 | \n", "0.303087 | \n", "0.574654 | \n", "-0.184627 | \n", "0.967908 | \n", "0.606741 | \n", "1.175119 | \n", "-0.233026 | \n", "... | \n", "0.158181 | \n", "2.434973 | \n", "-0.133689 | \n", "0.383268 | \n", "-0.312258 | \n", "-0.275593 | \n", "-0.232614 | \n", "-1.437120 | \n", "-0.858000 | \n", "0.206142 | \n", "
| 2 | \n", "COc1cc(O)cc(/C=C/c2ccccc2)c1 | \n", "10.00 | \n", "24277 | \n", "-0.781105 | \n", "0.506980 | \n", "0.992217 | \n", "-0.072119 | \n", "0.415398 | \n", "0.774680 | \n", "0.685892 | \n", "... | \n", "0.596572 | \n", "1.800434 | \n", "0.223677 | \n", "0.443226 | \n", "0.220224 | \n", "0.476239 | \n", "-0.582515 | \n", "0.397441 | \n", "-0.136095 | \n", "0.428414 | \n", "
| 3 | \n", "COc1c(O)cc2c(c1O)[C@H]1O[C@H](CO)[C@@H](O)[C@H... | \n", "10.00 | \n", "24277 | \n", "2.918283 | \n", "-2.266905 | \n", "-0.311273 | \n", "2.658938 | \n", "2.050004 | \n", "1.240017 | \n", "-2.649614 | \n", "... | \n", "1.805571 | \n", "1.434323 | \n", "0.165160 | \n", "1.557404 | \n", "0.087928 | \n", "-0.089972 | \n", "0.819127 | \n", "-0.750117 | \n", "-0.198089 | \n", "1.703560 | \n", "
| 4 | \n", "CCOc1ccc2ccccc2c1C(=O)N[C@@H]1C(=O)N2[C@@H]1SC... | \n", "4.39 | \n", "24277 | \n", "1.739474 | \n", "-0.128771 | \n", "0.524232 | \n", "2.595305 | \n", "2.700646 | \n", "1.711957 | \n", "-1.661281 | \n", "... | \n", "2.467593 | \n", "2.625543 | \n", "0.583185 | \n", "1.886184 | \n", "1.557583 | \n", "0.969722 | \n", "1.797292 | \n", "-0.085759 | \n", "0.763047 | \n", "2.259479 | \n", "
5 rows × 744 columns
\n", "| \n", " | dose | \n", "Plate | \n", "SMILES | \n", "221227_x_at | \n", "212345_s_at | \n", "218597_s_at | \n", "217140_s_at | \n", "209253_at | \n", "214404_x_at | \n", "219888_at | \n", "... | \n", "218397_at | \n", "202996_at | \n", "204608_at | \n", "211071_s_at | \n", "203341_at | \n", "202801_at | \n", "206414_s_at | \n", "204978_at | \n", "205379_at | \n", "203897_at | \n", "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | \n", "50.0 | \n", "PAC001_U2OS_6H_X1_B1_UNI4445L | \n", "CC(C)[C@H](CO)Nc1nc(Nc2cc(N)cc(Cl)c2)c2ncn(C(C... | \n", "-0.718409 | \n", "-1.412662 | \n", "-1.777799 | \n", "1.890969 | \n", "-0.686329 | \n", "3.356343 | \n", "1.075315 | \n", "... | \n", "-1.717976 | \n", "3.902234 | \n", "1.456811 | \n", "-3.779831 | \n", "-10.000000 | \n", "1.271066 | \n", "2.485811 | \n", "1.176754 | \n", "2.000332 | \n", "2.497287 | \n", "
| 1 | \n", "12.7 | \n", "PAC001_U2OS_6H_X1_B1_UNI4445L | \n", "Ic1cccc(CSc2nnc(-c3ccncc3)o2)c1 | \n", "0.253430 | \n", "-1.271711 | \n", "-0.036673 | \n", "0.028366 | \n", "0.739463 | \n", "-1.707844 | \n", "0.935368 | \n", "... | \n", "0.671731 | \n", "-1.828476 | \n", "1.888788 | \n", "0.915792 | \n", "-0.224897 | \n", "-0.052488 | \n", "-1.118856 | \n", "1.812681 | \n", "-0.634178 | \n", "-1.210292 | \n", "
| 2 | \n", "50.0 | \n", "PAC001_U2OS_6H_X1_B1_UNI4445L | \n", "O=C(Nc1ccncc1)Nc1c(Cl)cc(Cl)cc1Cl | \n", "-0.431849 | \n", "1.006752 | \n", "-0.005589 | \n", "-0.238377 | \n", "-0.340128 | \n", "-0.659585 | \n", "-0.178832 | \n", "... | \n", "-0.149266 | \n", "-0.236360 | \n", "-0.070655 | \n", "0.173975 | \n", "0.885048 | \n", "0.057613 | \n", "-2.033094 | \n", "-0.262186 | \n", "-0.864318 | \n", "1.475228 | \n", "
| 3 | \n", "16.2 | \n", "PAC001_U2OS_6H_X1_B1_UNI4445L | \n", "COc1ccc(CNC(=O)Nc2ncc([N+](=O)[O-])s2)cc1 | \n", "0.156709 | \n", "-0.700982 | \n", "0.994199 | \n", "-0.620332 | \n", "-1.406496 | \n", "-0.690759 | \n", "-1.306693 | \n", "... | \n", "-0.092553 | \n", "-0.844454 | \n", "0.739464 | \n", "-0.661288 | \n", "2.550107 | \n", "-0.112061 | \n", "-1.248323 | \n", "0.082003 | \n", "0.681632 | \n", "-0.244761 | \n", "
| 4 | \n", "12.5 | \n", "PAC001_U2OS_6H_X1_B1_UNI4445L | \n", "O=C(O)c1ccc2c3c1cccc3c(=O)n1c3ccccc3nc21 | \n", "1.815569 | \n", "1.297062 | \n", "-0.361718 | \n", "-0.319951 | \n", "-0.041302 | \n", "-0.352507 | \n", "0.173617 | \n", "... | \n", "-0.214741 | \n", "-0.933822 | \n", "0.826746 | \n", "-0.013567 | \n", "0.621621 | \n", "-1.064682 | \n", "2.366801 | \n", "-0.141855 | \n", "-0.968730 | \n", "0.305618 | \n", "
5 rows × 980 columns
\n", "