{ "cells": [ { "cell_type": "markdown", "metadata": {}, "source": [ "## 数据处理:SMILES信息在Gene里,CP里面没有,所以首先在这里实现映射和对齐" ] }, { "cell_type": "code", "execution_count": 1, "metadata": {}, "outputs": [], "source": [ "import numpy as np\n", "import pandas as pd\n", "import matplotlib.pyplot as plt\n", "import seaborn as sns\n", "import os\n", "import h5py\n", "\n", "def load_from_HDF(fname):\n", " \"\"\"Load data from a HDF5 file to a dictionary.\"\"\"\n", " data = dict()\n", " with h5py.File(fname, 'r') as f:\n", " for key in f:\n", " data[key] = np.asarray(f[key])\n", " if isinstance(data[key][0], np.bytes_):\n", " data[key] = data[key].astype(str)\n", " return data" ] }, { "cell_type": "code", "execution_count": 2, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "(113416, 898) (61313, 980)\n" ] }, { "data": { "text/html": [ "
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pert_dosedet_plateCPD_SMILES221227_x_at212345_s_at218597_s_at217140_s_at209253_at214404_x_at219888_at...218397_at202996_at204608_at211071_s_at203341_at202801_at206414_s_at204978_at205379_at203897_at
050.0PAC001_U2OS_6H_X1_B1_UNI4445LCC(C)[C@H](CO)Nc1nc(Nc2cc(N)cc(Cl)c2)c2ncn(C(C...-0.118505-0.293445-0.2940880.292745-0.1458960.973580.247915...-0.5299050.8049920.430269-0.97559-1.7406050.3403820.4987780.3521520.535910.52484
112.7PAC001_U2OS_6H_X1_B1_UNI4445LIc1cccc(CSc2nnc(o2)-c2ccncc2)c10.043264-0.264945-0.0006330.0009350.177604-0.504720.214315...0.228895-0.3813080.5569690.25051-0.025625-0.024428-0.2251220.533052-0.19329-0.25436
250.0PAC001_U2OS_6H_X1_B1_UNI4445LClc1cc(Cl)c(NC(=O)Nc2ccncc2)c(Cl)c1-0.0708050.1957550.004606-0.040855-0.067346-0.19872-0.053195...-0.031795-0.051728-0.0177410.056810.1306950.005919-0.408722-0.057177-0.256990.31004
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5 rows × 980 columns

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" ], "text/plain": [ " pert_dose det_plate \\\n", "0 50.0 PAC001_U2OS_6H_X1_B1_UNI4445L \n", "1 12.7 PAC001_U2OS_6H_X1_B1_UNI4445L \n", "2 50.0 PAC001_U2OS_6H_X1_B1_UNI4445L \n", "3 16.2 PAC001_U2OS_6H_X1_B1_UNI4445L \n", "4 12.5 PAC001_U2OS_6H_X1_B1_UNI4445L \n", "\n", " CPD_SMILES 221227_x_at \\\n", "0 CC(C)[C@H](CO)Nc1nc(Nc2cc(N)cc(Cl)c2)c2ncn(C(C... -0.118505 \n", "1 Ic1cccc(CSc2nnc(o2)-c2ccncc2)c1 0.043264 \n", "2 Clc1cc(Cl)c(NC(=O)Nc2ccncc2)c(Cl)c1 -0.070805 \n", "3 COc1ccc(CNC(=O)Nc2ncc(s2)[N+]([O-])=O)cc1 0.027165 \n", "4 OC(=O)c1ccc2c3nc4ccccc4n3c(=O)c3cccc1c23 0.303294 \n", "\n", " 212345_s_at 218597_s_at 217140_s_at 209253_at 214404_x_at 219888_at \\\n", "0 -0.293445 -0.294088 0.292745 -0.145896 0.97358 0.247915 \n", "1 -0.264945 -0.000633 0.000935 0.177604 -0.50472 0.214315 \n", "2 0.195755 0.004606 -0.040855 -0.067346 -0.19872 -0.053195 \n", "3 -0.149545 0.173113 -0.100695 -0.309296 -0.20782 -0.323985 \n", "4 0.254455 -0.055418 -0.053635 0.000455 -0.10908 0.031425 \n", "\n", " ... 218397_at 202996_at 204608_at 211071_s_at 203341_at 202801_at \\\n", "0 ... -0.529905 0.804992 0.430269 -0.97559 -1.740605 0.340382 \n", "1 ... 0.228895 -0.381308 0.556969 0.25051 -0.025625 -0.024428 \n", "2 ... -0.031795 -0.051728 -0.017741 0.05681 0.130695 0.005919 \n", "3 ... -0.013787 -0.177608 0.219869 -0.16129 0.365195 -0.040848 \n", "4 ... -0.052585 -0.196108 0.245469 0.00784 0.093595 -0.303418 \n", "\n", " 206414_s_at 204978_at 205379_at 203897_at \n", "0 0.498778 0.352152 0.53591 0.52484 \n", "1 -0.225122 0.533052 -0.19329 -0.25436 \n", "2 -0.408722 -0.057177 -0.25699 0.31004 \n", "3 -0.251122 0.040732 0.17091 -0.05144 \n", "4 0.474878 -0.022947 -0.28589 0.06423 \n", "\n", "[5 rows x 980 columns]" ] }, "execution_count": 2, "metadata": {}, "output_type": "execute_result" } ], "source": [ "CP_path = './CP_data.parquet'\n", "GE_path = './GE_data.parquet'\n", "\n", "CP_CSV = pd.read_parquet(CP_path)\n", "GE_CSV = pd.read_parquet(GE_path)\n", "print(CP_CSV.shape, GE_CSV.shape)\n", "GE_CSV.head()" ] }, { "cell_type": "code", "execution_count": 3, "metadata": {}, "outputs": [ { "data": { "text/plain": [ "((20342,), (20342,))" ] }, "execution_count": 3, "metadata": {}, "output_type": "execute_result" } ], "source": [ "CP_CSV['SMILES'].unique().shape, GE_CSV['CPD_SMILES'].unique().shape # 包含 NaN的" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## 数据对齐\n", "\n", "### 对齐逻辑:数据清洗,各自生成对齐数据即可" ] }, { "cell_type": "code", "execution_count": 7, "metadata": {}, "outputs": [], "source": [ "# GE_CSV = GE_CSV.rename(columns={\n", "# 'CPD_SMILES': 'SMILES',\n", "# 'pert_dose': 'dose',\n", "# 'det_plate': 'Plate'\n", "# })\n", "# GE_CSV = GE_CSV.drop(columns=['Metadata_moa'])\n", "# GE_CSV.head()" ] }, { "cell_type": "code", "execution_count": 6, "metadata": {}, "outputs": [ { "data": { "text/html": [ "
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dosePlateSMILES221227_x_at212345_s_at218597_s_at217140_s_at209253_at214404_x_at219888_at...218397_at202996_at204608_at211071_s_at203341_at202801_at206414_s_at204978_at205379_at203897_at
050.0PAC001_U2OS_6H_X1_B1_UNI4445LCC(C)[C@H](CO)Nc1nc(Nc2cc(N)cc(Cl)c2)c2ncn(C(C...-0.118505-0.293445-0.2940880.292745-0.1458960.973580.247915...-0.5299050.8049920.430269-0.97559-1.7406050.3403820.4987780.3521520.535910.52484
112.7PAC001_U2OS_6H_X1_B1_UNI4445LIc1cccc(CSc2nnc(o2)-c2ccncc2)c10.043264-0.264945-0.0006330.0009350.177604-0.504720.214315...0.228895-0.3813080.5569690.25051-0.025625-0.024428-0.2251220.533052-0.19329-0.25436
250.0PAC001_U2OS_6H_X1_B1_UNI4445LClc1cc(Cl)c(NC(=O)Nc2ccncc2)c(Cl)c1-0.0708050.1957550.004606-0.040855-0.067346-0.19872-0.053195...-0.031795-0.051728-0.0177410.056810.1306950.005919-0.408722-0.057177-0.256990.31004
316.2PAC001_U2OS_6H_X1_B1_UNI4445LCOc1ccc(CNC(=O)Nc2ncc(s2)[N+]([O-])=O)cc10.027165-0.1495450.173113-0.100695-0.309296-0.20782-0.323985...-0.013787-0.1776080.219869-0.161290.365195-0.040848-0.2511220.0407320.17091-0.05144
412.5PAC001_U2OS_6H_X1_B1_UNI4445LOC(=O)c1ccc2c3nc4ccccc4n3c(=O)c3cccc1c230.3032940.254455-0.055418-0.0536350.000455-0.109080.031425...-0.052585-0.1961080.2454690.007840.093595-0.3034180.474878-0.022947-0.285890.06423
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5 rows × 980 columns

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" ], "text/plain": [ " dose Plate \\\n", "0 50.0 PAC001_U2OS_6H_X1_B1_UNI4445L \n", "1 12.7 PAC001_U2OS_6H_X1_B1_UNI4445L \n", "2 50.0 PAC001_U2OS_6H_X1_B1_UNI4445L \n", "3 16.2 PAC001_U2OS_6H_X1_B1_UNI4445L \n", "4 12.5 PAC001_U2OS_6H_X1_B1_UNI4445L \n", "\n", " SMILES 221227_x_at \\\n", "0 CC(C)[C@H](CO)Nc1nc(Nc2cc(N)cc(Cl)c2)c2ncn(C(C... -0.118505 \n", "1 Ic1cccc(CSc2nnc(o2)-c2ccncc2)c1 0.043264 \n", "2 Clc1cc(Cl)c(NC(=O)Nc2ccncc2)c(Cl)c1 -0.070805 \n", "3 COc1ccc(CNC(=O)Nc2ncc(s2)[N+]([O-])=O)cc1 0.027165 \n", "4 OC(=O)c1ccc2c3nc4ccccc4n3c(=O)c3cccc1c23 0.303294 \n", "\n", " 212345_s_at 218597_s_at 217140_s_at 209253_at 214404_x_at 219888_at \\\n", "0 -0.293445 -0.294088 0.292745 -0.145896 0.97358 0.247915 \n", "1 -0.264945 -0.000633 0.000935 0.177604 -0.50472 0.214315 \n", "2 0.195755 0.004606 -0.040855 -0.067346 -0.19872 -0.053195 \n", "3 -0.149545 0.173113 -0.100695 -0.309296 -0.20782 -0.323985 \n", "4 0.254455 -0.055418 -0.053635 0.000455 -0.10908 0.031425 \n", "\n", " ... 218397_at 202996_at 204608_at 211071_s_at 203341_at 202801_at \\\n", "0 ... -0.529905 0.804992 0.430269 -0.97559 -1.740605 0.340382 \n", "1 ... 0.228895 -0.381308 0.556969 0.25051 -0.025625 -0.024428 \n", "2 ... -0.031795 -0.051728 -0.017741 0.05681 0.130695 0.005919 \n", "3 ... -0.013787 -0.177608 0.219869 -0.16129 0.365195 -0.040848 \n", "4 ... -0.052585 -0.196108 0.245469 0.00784 0.093595 -0.303418 \n", "\n", " 206414_s_at 204978_at 205379_at 203897_at \n", "0 0.498778 0.352152 0.53591 0.52484 \n", "1 -0.225122 0.533052 -0.19329 -0.25436 \n", "2 -0.408722 -0.057177 -0.25699 0.31004 \n", "3 -0.251122 0.040732 0.17091 -0.05144 \n", "4 0.474878 -0.022947 -0.28589 0.06423 \n", "\n", "[5 rows x 980 columns]" ] }, "execution_count": 6, "metadata": {}, "output_type": "execute_result" } ], "source": [ "GE_CSV.head()" ] }, { "cell_type": "code", "execution_count": 8, "metadata": {}, "outputs": [ { "data": { "text/html": [ "
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Metadata_mmoles_per_liter2SMILESMetadata_PlateCells_AreaShape_CompactnessCells_AreaShape_EulerNumberCells_AreaShape_ExtentCells_AreaShape_FormFactorCells_AreaShape_MaxFeretDiameterCells_AreaShape_MaximumRadiusCells_AreaShape_Solidity...Nuclei_Texture_SumEntropy_DNA_5_0Nuclei_Texture_SumEntropy_ER_3_0Nuclei_Texture_SumEntropy_Mito_3_0Nuclei_Texture_SumEntropy_RNA_5_0Nuclei_Texture_SumVariance_ER_3_0Nuclei_Texture_SumVariance_Mito_5_0Nuclei_Texture_SumVariance_RNA_10_0Nuclei_Texture_Variance_AGP_5_0Nuclei_Texture_Variance_ER_5_0Nuclei_Texture_Variance_RNA_5_0
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Current feature count: 839\n", "\n", "[Step 2] Performing Plate-wise Robust Normalization (The JUMP-CP Way)...\n", "\n", "[Step 3] Feature Selection...\n", "Features reduced from 839 to 838\n", "\n", "[Step 4] Global Splitting by SMILES & Saving to Unified HDF5...\n", "Unique SMILES for splitting: 20341\n", "Generating paired controls (random sampling from same plate)...\n", "Saving 86844 samples to 'combined' group...\n", "\n", "=========== DONE ===========\n", "HDF5 saved to: /home/bob/boom/VCBench/data/MVC/MVC_BBBC047/BBBC047_smiles_split_CP.h5\n", "Final Data Shape: (86844, 838)\n", "Split Distribution:\n", "{0: 17338, 1: 17376, 2: 17414, 3: 17405, 4: 17311}\n", "Verification passed.\n" ] } ], "source": [ "import os\n", "import numpy as np\n", "import pandas as pd\n", "import h5py\n", "from sklearn.model_selection import KFold\n", "from sklearn.feature_selection import VarianceThreshold\n", "\n", "# ===========================================================\n", "# 1. 配置与加载 (Setup & Load)\n", "# ===========================================================\n", "output_h5 = \"./BBBC047_smiles_split_CP.h5\" \n", "RANDOM_SEED = 42 # 保证未来 GE 数据划分时的一致性\n", "\n", "# 假设 CP_CSV 是你环境中已经存在的 DataFrame\n", "# df = pd.read_csv(\"BBBC047_CP_data.csv\") \n", "df = CP_CSV.copy()\n", "\n", "# 分离元数据和特征\n", "meta_cols = [\"dose\", \"SMILES\", \"Plate\"]\n", "feature_cols = [c for c in df.columns if c not in meta_cols]\n", "df_meta = df[meta_cols].copy()\n", "df_features = df[feature_cols].apply(pd.to_numeric, errors='coerce')\n", "\n", "# 标记 DMSO\n", "dmso_mask = df_meta[\"SMILES\"].astype(str).str.contains(\"DMSO\", case=False, na=False)\n", "non_dmso_mask = ~dmso_mask\n", "\n", "print(f\"Total samples: {len(df)}\")\n", "print(f\"DMSO (Negative Control): {dmso_mask.sum()}\")\n", "print(f\"Non-DMSO (Perturbed): {non_dmso_mask.sum()}\")\n", "\n", "# ===========================================================\n", "# 2. 预处理:清洗与对数变换 (Cleaning & Log Transform)\n", "# ===========================================================\n", "print(\"\\n[Step 1] Basic Cleaning & Log1p Transformation...\")\n", "\n", "# 1. 替换 Inf 为 NaN\n", "df_features = df_features.replace([np.inf, -np.inf], np.nan)\n", "\n", "# 2. 删除全部为 NaN 的列\n", "original_n_cols = df_features.shape[1]\n", "df_features = df_features.dropna(axis=1, how='all')\n", "dropped_nan_cols = original_n_cols - df_features.shape[1]\n", "print(f\" > Dropped {dropped_nan_cols} columns containing only NaNs\")\n", "\n", "# 3. 均值填充\n", "df_features = df_features.fillna(df_features.mean())\n", "\n", "# 4. 【兜底填充】防止均值也是 NaN 的情况 (即残留 NaN 补 0)\n", "if df_features.isnull().values.any():\n", " print(\" > Warning: Residual NaNs found after mean filling. Filling with 0.\")\n", " df_features = df_features.fillna(0)\n", "\n", "# 5. 【移除零方差列】\n", "var_mask = (df_features.var() > 1e-9)\n", "if (~var_mask).sum() > 0:\n", " print(f\" > Dropped {(~var_mask).sum()} columns with zero/near-zero variance\")\n", " df_features = df_features.loc[:, var_mask]\n", "\n", "# 6. 【关键】同步更新 feature_cols 列表\n", "feature_cols = df_features.columns.tolist()\n", "\n", "# 7. Log1p 变换\n", "cols_to_log = [c for c in feature_cols if df_features[c].max() > 50 and df_features[c].min() >= 0]\n", "if cols_to_log:\n", " print(f\"Applying Log1p to {len(cols_to_log)} features...\")\n", " df_features[cols_to_log] = np.log1p(df_features[cols_to_log])\n", "\n", "# 更新 DataFrame\n", "df_combined = pd.concat([df_meta, df_features], axis=1)\n", "print(f\" > Feature processing done. Current feature count: {len(feature_cols)}\")\n", "\n", "# ===========================================================\n", "# 3. 核心步骤:按板标准化 (Plate-wise Robust Normalization)\n", "# ===========================================================\n", "print(\"\\n[Step 2] Performing Plate-wise Robust Normalization (The JUMP-CP Way)...\")\n", "\n", "normalized_data = []\n", "for plate_id, plate_df in df_combined.groupby(\"Plate\"):\n", " \n", " # 获取该板内的特征矩阵\n", " X_plate = plate_df[feature_cols].values\n", " is_dmso_in_plate = plate_df[\"SMILES\"].astype(str).str.contains(\"DMSO\", case=False, na=False).values\n", " \n", " # 真正的丢弃逻辑\n", " if is_dmso_in_plate.sum() < 2:\n", " print(f\"⚠️ Warning: Plate {plate_id} has < 2 DMSO samples. DROPPING this plate completely.\")\n", " continue\n", " \n", " # 标准化计算\n", " X_dmso = X_plate[is_dmso_in_plate]\n", " medians = np.median(X_dmso, axis=0) # 计算每个基因维度上的中位数,更鲁棒\n", " deviations = np.abs(X_dmso - medians)\n", " mads = np.median(deviations, axis=0)\n", " mads[mads < 1e-5] = 1.0 \n", " \n", " X_norm = (X_plate - medians) / (mads * 1.4826)\n", " X_norm = np.clip(X_norm, -10, 10) # 截断离群值\n", " \n", " plate_df_norm = plate_df.copy()\n", " plate_df_norm[feature_cols] = X_norm\n", " normalized_data.append(plate_df_norm)\n", "\n", "if len(normalized_data) == 0:\n", " raise ValueError(\"Error: No valid plates found! Check your data.\")\n", "\n", "df_norm = pd.concat(normalized_data, axis=0)\n", "# 重新整理索引,防止 concat 后索引混乱\n", "df_norm = df_norm.reset_index(drop=True)\n", "df_features_norm = df_norm[feature_cols]\n", "\n", "# ===========================================================\n", "# 4. 特征选择 (Feature Selection)\n", "# ===========================================================\n", "print(\"\\n[Step 3] Feature Selection...\")\n", "\n", "selector = VarianceThreshold(threshold=0.01)\n", "selector.fit(df_features_norm)\n", "selected_indices = selector.get_support(indices=True)\n", "selected_feat_cols = [feature_cols[i] for i in selected_indices]\n", "# 最终用于保存的特征数据\n", "df_features_final = df_features_norm[selected_feat_cols]\n", "\n", "print(f\"Features reduced from {len(feature_cols)} to {len(selected_feat_cols)}\")\n", "\n", "# ===========================================================\n", "# 5. 划分数据集与保存 (Splitting & HDF5 Saving)\n", "# ===========================================================\n", "print(\"\\n[Step 4] Global Splitting by SMILES & Saving to Unified HDF5...\")\n", "\n", "# --- 5.1 准备数据 ---\n", "is_dmso = df_norm[\"SMILES\"].astype(str).str.contains(\"DMSO\", case=False, na=False)\n", "is_drug = ~is_dmso\n", "\n", "# 提取药物数据 (Target / Post)\n", "# 这里必须保留原始 df_norm 的索引,方便后续 mapping\n", "df_drugs = df_norm[is_drug].copy()\n", "X_drugs = df_features_final.loc[is_drug].values.astype(np.float32)\n", "\n", "# --- 5.2 构建 DMSO 资源池 (用于随机抽样 Control) ---\n", "df_dmso = df_norm[is_dmso].copy()\n", "dmso_pool = {}\n", "for pid, group in df_dmso.groupby(\"Plate\"):\n", " dmso_pool[str(pid)] = group[selected_feat_cols].values.astype(np.float32)\n", "\n", "# --- 5.3 计算 Fold ID (关键修改点) ---\n", "# 获取所有唯一的药物 SMILES\n", "unique_drug_smiles = sorted(df_drugs[\"SMILES\"].unique().astype(str))\n", "print(f\"Unique SMILES for splitting: {len(unique_drug_smiles)}\")\n", "\n", "# 建立 SMILES -> Fold ID 的映射\n", "smiles_to_fold = {}\n", "kf = KFold(n_splits=5, shuffle=True, random_state=RANDOM_SEED)\n", "\n", "# 对 Unique SMILES 进行划分\n", "for fold_idx, (_, test_idx) in enumerate(kf.split(unique_drug_smiles)):\n", " # test_idx 里的 SMILES 被分配给当前 fold (通常作为验证集/测试集标记)\n", " # 但在 HDF5 里我们只需要标记它属于哪个 \"Partition\"\n", " for idx in test_idx:\n", " s = unique_drug_smiles[idx]\n", " smiles_to_fold[s] = fold_idx\n", "\n", "# --- 5.4 生成最终数据列表 ---\n", "# 我们不再按 fold 循环写入,而是生成整个数据集,带上 split_id\n", "final_smiles = df_drugs[\"SMILES\"].astype(str).values\n", "final_dose = df_drugs[\"dose\"].values\n", "final_plate = df_drugs[\"Plate\"].astype(str).values\n", "final_target = X_drugs\n", "final_split_id = np.array([smiles_to_fold[s] for s in final_smiles], dtype=np.int32)\n", "\n", "# 生成对应的 Control (Pre) 数据\n", "final_control = []\n", "print(\"Generating paired controls (random sampling from same plate)...\")\n", "for i, pid in enumerate(final_plate):\n", " if pid in dmso_pool and len(dmso_pool[pid]) > 0:\n", " # 随机抽取一个同板的 DMSO\n", " rand_idx = np.random.randint(len(dmso_pool[pid]))\n", " chosen_dmso = dmso_pool[pid][rand_idx]\n", " final_control.append(chosen_dmso)\n", " else:\n", " # 理论上不应发生,因为之前过滤过 DMSO<2 的板\n", " final_control.append(np.zeros(X_drugs.shape[1], dtype=np.float32))\n", "\n", "final_control = np.array(final_control, dtype=np.float32)\n", "\n", "# --- 5.5 写入 HDF5 (Unified Structure) ---\n", "dt_str = h5py.string_dtype(encoding='utf-8')\n", "\n", "with h5py.File(output_h5, \"w\") as f:\n", " g_all = f.create_group(\"combined\")\n", " \n", " print(f\"Saving {len(final_smiles)} samples to 'combined' group...\")\n", " \n", " # 核心数据\n", " g_all.create_dataset(\"Target\", data=final_target, compression=\"gzip\")\n", " g_all.create_dataset(\"Control\", data=final_control, compression=\"gzip\")\n", " \n", " # 元数据\n", " g_all.create_dataset(\"smiles\", data=final_smiles.astype(object), dtype=dt_str, compression=\"gzip\")\n", " g_all.create_dataset(\"dose\", data=final_dose, compression=\"gzip\")\n", " g_all.create_dataset(\"plate_id\", data=final_plate.astype(object), dtype=dt_str, compression=\"gzip\")\n", " \n", " # 【最关键的元数据】用于后续动态 Dataset 划分\n", " g_all.create_dataset(\"split_id\", data=final_split_id, compression=\"gzip\")\n", "\n", "# ===========================================================\n", "# 6. 验证 (Validation)\n", "# ===========================================================\n", "print(\"\\n=========== DONE ===========\")\n", "print(f\"HDF5 saved to: {os.path.abspath(output_h5)}\")\n", "print(f\"Final Data Shape: {final_target.shape}\")\n", "print(\"Split Distribution:\")\n", "unique, counts = np.unique(final_split_id, return_counts=True)\n", "print(dict(zip(unique, counts)))\n", "\n", "assert not np.isnan(final_target).any(), \"Error: NaN found in final output!\"\n", "print(\"Verification passed.\")" ] }, { "cell_type": "code", "execution_count": 11, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "Total samples: 61313\n", "DMSO (Negative Control): 3478\n", "Non-DMSO (Perturbed): 57835\n", "\n", "[Step 1] Basic Cleaning & Log1p Transformation...\n", " > Dropped 0 columns containing only NaNs\n", " > Feature processing done. Current feature count: 977\n", "\n", "[Step 2] Performing Plate-wise Robust Normalization (The JUMP-CP Way)...\n", "⚠️ Warning: Plate PAC062_U2OS_6H_X1_B1_UNI4445L has < 2 DMSO samples. DROPPING this plate completely.\n", "⚠️ Warning: Plate PAC062_U2OS_6H_X2_B1_UNI4445L has < 2 DMSO samples. DROPPING this plate completely.\n", "⚠️ Warning: Plate PAC062_U2OS_6H_X3_B1_UNI4445L has < 2 DMSO samples. DROPPING this plate completely.\n", "\n", "[Step 3] Feature Selection...\n", "Features reduced from 977 to 977\n", "\n", "[Step 4] Global Splitting by SMILES & Saving to Unified HDF5...\n", "Unique SMILES for splitting: 20294\n", "Generating paired controls (random sampling from same plate)...\n", "Saving 57692 samples to 'combined' group...\n", "\n", "=========== DONE ===========\n", "HDF5 saved to: /home/bob/boom/VCBench/data/MVC/MVC_BBBC047/BBBC047_smiles_split_GE.h5\n", "Final Data Shape: (57692, 977)\n", "Split Distribution:\n", "{0: 11742, 1: 11549, 2: 11478, 3: 11493, 4: 11430}\n", "Verification passed.\n" ] } ], "source": [ "import os\n", "import numpy as np\n", "import pandas as pd\n", "import h5py\n", "from sklearn.model_selection import KFold\n", "from sklearn.feature_selection import VarianceThreshold\n", "\n", "# ===========================================================\n", "# 1. 配置与加载 (Setup & Load)\n", "# ===========================================================\n", "output_h5 = \"./BBBC047_smiles_split_GE.h5\" \n", "RANDOM_SEED = 42 # 保证未来 GE 数据划分时的一致性\n", "\n", "# 假设 CP_CSV 是你环境中已经存在的 DataFrame\n", "# df = pd.read_csv(\"BBBC047_CP_data.csv\") \n", "df = GE_CSV.copy()\n", "\n", "# 分离元数据和特征\n", "meta_cols = [\"dose\", \"SMILES\", \"Plate\"]\n", "feature_cols = [c for c in df.columns if c not in meta_cols]\n", "df_meta = df[meta_cols].copy()\n", "df_features = df[feature_cols].apply(pd.to_numeric, errors='coerce')\n", "\n", "# 标记 DMSO\n", "dmso_mask = df_meta[\"SMILES\"].astype(str).str.contains(\"DMSO\", case=False, na=False)\n", "non_dmso_mask = ~dmso_mask\n", "\n", "print(f\"Total samples: {len(df)}\")\n", "print(f\"DMSO (Negative Control): {dmso_mask.sum()}\")\n", "print(f\"Non-DMSO (Perturbed): {non_dmso_mask.sum()}\")\n", "\n", "# ===========================================================\n", "# 2. 预处理:清洗与对数变换 (Cleaning & Log Transform)\n", "# ===========================================================\n", "print(\"\\n[Step 1] Basic Cleaning & Log1p Transformation...\")\n", "\n", "# 1. 替换 Inf 为 NaN\n", "df_features = df_features.replace([np.inf, -np.inf], np.nan)\n", "\n", "# 2. 删除全部为 NaN 的列\n", "original_n_cols = df_features.shape[1]\n", "df_features = df_features.dropna(axis=1, how='all')\n", "dropped_nan_cols = original_n_cols - df_features.shape[1]\n", "print(f\" > Dropped {dropped_nan_cols} columns containing only NaNs\")\n", "\n", "# 3. 均值填充\n", "df_features = df_features.fillna(df_features.mean())\n", "\n", "# 4. 【兜底填充】防止均值也是 NaN 的情况 (即残留 NaN 补 0)\n", "if df_features.isnull().values.any():\n", " print(\" > Warning: Residual NaNs found after mean filling. Filling with 0.\")\n", " df_features = df_features.fillna(0)\n", "\n", "# 5. 【移除零方差列】\n", "var_mask = (df_features.var() > 1e-9)\n", "if (~var_mask).sum() > 0:\n", " print(f\" > Dropped {(~var_mask).sum()} columns with zero/near-zero variance\")\n", " df_features = df_features.loc[:, var_mask]\n", "\n", "# 6. 【关键】同步更新 feature_cols 列表\n", "feature_cols = df_features.columns.tolist()\n", "\n", "# 7. Log1p 变换\n", "cols_to_log = [c for c in feature_cols if df_features[c].max() > 50 and df_features[c].min() >= 0]\n", "if cols_to_log:\n", " print(f\"Applying Log1p to {len(cols_to_log)} features...\")\n", " df_features[cols_to_log] = np.log1p(df_features[cols_to_log])\n", "\n", "# 更新 DataFrame\n", "df_combined = pd.concat([df_meta, df_features], axis=1)\n", "print(f\" > Feature processing done. Current feature count: {len(feature_cols)}\")\n", "\n", "# ===========================================================\n", "# 3. 核心步骤:按板标准化 (Plate-wise Robust Normalization)\n", "# ===========================================================\n", "print(\"\\n[Step 2] Performing Plate-wise Robust Normalization (The JUMP-CP Way)...\")\n", "\n", "normalized_data = []\n", "for plate_id, plate_df in df_combined.groupby(\"Plate\"):\n", " \n", " # 获取该板内的特征矩阵\n", " X_plate = plate_df[feature_cols].values\n", " is_dmso_in_plate = plate_df[\"SMILES\"].astype(str).str.contains(\"DMSO\", case=False, na=False).values\n", " \n", " # 真正的丢弃逻辑\n", " if is_dmso_in_plate.sum() < 2:\n", " print(f\"⚠️ Warning: Plate {plate_id} has < 2 DMSO samples. DROPPING this plate completely.\")\n", " continue\n", " \n", " # 标准化计算\n", " X_dmso = X_plate[is_dmso_in_plate]\n", " medians = np.median(X_dmso, axis=0)\n", " deviations = np.abs(X_dmso - medians)\n", " mads = np.median(deviations, axis=0)\n", " mads[mads < 1e-5] = 1.0 \n", " \n", " X_norm = (X_plate - medians) / (mads * 1.4826)\n", " X_norm = np.clip(X_norm, -10, 10) # 截断离群值\n", " \n", " plate_df_norm = plate_df.copy()\n", " plate_df_norm[feature_cols] = X_norm\n", " normalized_data.append(plate_df_norm)\n", "\n", "if len(normalized_data) == 0:\n", " raise ValueError(\"Error: No valid plates found! Check your data.\")\n", "\n", "df_norm = pd.concat(normalized_data, axis=0)\n", "# 重新整理索引,防止 concat 后索引混乱\n", "df_norm = df_norm.reset_index(drop=True)\n", "df_features_norm = df_norm[feature_cols]\n", "\n", "# ===========================================================\n", "# 4. 特征选择 (Feature Selection)\n", "# ===========================================================\n", "print(\"\\n[Step 3] Feature Selection...\")\n", "\n", "selector = VarianceThreshold(threshold=0.01)\n", "selector.fit(df_features_norm)\n", "selected_indices = selector.get_support(indices=True)\n", "selected_feat_cols = [feature_cols[i] for i in selected_indices]\n", "# 最终用于保存的特征数据\n", "df_features_final = df_features_norm[selected_feat_cols]\n", "\n", "print(f\"Features reduced from {len(feature_cols)} to {len(selected_feat_cols)}\")\n", "\n", "# ===========================================================\n", "# 5. 划分数据集与保存 (Splitting & HDF5 Saving)\n", "# ===========================================================\n", "print(\"\\n[Step 4] Global Splitting by SMILES & Saving to Unified HDF5...\")\n", "\n", "# --- 5.1 准备数据 ---\n", "is_dmso = df_norm[\"SMILES\"].astype(str).str.contains(\"DMSO\", case=False, na=False)\n", "is_drug = ~is_dmso\n", "\n", "# 提取药物数据 (Target / Post)\n", "# 这里必须保留原始 df_norm 的索引,方便后续 mapping\n", "df_drugs = df_norm[is_drug].copy()\n", "X_drugs = df_features_final.loc[is_drug].values.astype(np.float32)\n", "\n", "# --- 5.2 构建 DMSO 资源池 (用于随机抽样 Control) ---\n", "df_dmso = df_norm[is_dmso].copy()\n", "dmso_pool = {}\n", "for pid, group in df_dmso.groupby(\"Plate\"):\n", " dmso_pool[str(pid)] = group[selected_feat_cols].values.astype(np.float32)\n", "\n", "# --- 5.3 计算 Fold ID (关键修改点) ---\n", "# 获取所有唯一的药物 SMILES\n", "unique_drug_smiles = sorted(df_drugs[\"SMILES\"].unique().astype(str))\n", "print(f\"Unique SMILES for splitting: {len(unique_drug_smiles)}\")\n", "\n", "# 建立 SMILES -> Fold ID 的映射\n", "smiles_to_fold = {}\n", "kf = KFold(n_splits=5, shuffle=True, random_state=RANDOM_SEED)\n", "\n", "# 对 Unique SMILES 进行划分\n", "for fold_idx, (_, test_idx) in enumerate(kf.split(unique_drug_smiles)):\n", " # test_idx 里的 SMILES 被分配给当前 fold (通常作为验证集/测试集标记)\n", " # 但在 HDF5 里我们只需要标记它属于哪个 \"Partition\"\n", " for idx in test_idx:\n", " s = unique_drug_smiles[idx]\n", " smiles_to_fold[s] = fold_idx\n", "\n", "# --- 5.4 生成最终数据列表 ---\n", "# 我们不再按 fold 循环写入,而是生成整个数据集,带上 split_id\n", "final_smiles = df_drugs[\"SMILES\"].astype(str).values\n", "final_dose = df_drugs[\"dose\"].values\n", "final_plate = df_drugs[\"Plate\"].astype(str).values\n", "final_target = X_drugs\n", "final_split_id = np.array([smiles_to_fold[s] for s in final_smiles], dtype=np.int32)\n", "\n", "# 生成对应的 Control (Pre) 数据\n", "final_control = []\n", "print(\"Generating paired controls (random sampling from same plate)...\")\n", "for i, pid in enumerate(final_plate):\n", " if pid in dmso_pool and len(dmso_pool[pid]) > 0:\n", " # 随机抽取一个同板的 DMSO\n", " rand_idx = np.random.randint(len(dmso_pool[pid]))\n", " chosen_dmso = dmso_pool[pid][rand_idx]\n", " final_control.append(chosen_dmso)\n", " else:\n", " # 理论上不应发生,因为之前过滤过 DMSO<2 的板\n", " final_control.append(np.zeros(X_drugs.shape[1], dtype=np.float32))\n", "\n", "final_control = np.array(final_control, dtype=np.float32)\n", "\n", "# --- 5.5 写入 HDF5 (Unified Structure) ---\n", "dt_str = h5py.string_dtype(encoding='utf-8')\n", "\n", "with h5py.File(output_h5, \"w\") as f:\n", " g_all = f.create_group(\"combined\")\n", " \n", " print(f\"Saving {len(final_smiles)} samples to 'combined' group...\")\n", " \n", " # 核心数据\n", " g_all.create_dataset(\"Target\", data=final_target, compression=\"gzip\")\n", " g_all.create_dataset(\"Control\", data=final_control, compression=\"gzip\")\n", " \n", " # 元数据\n", " g_all.create_dataset(\"smiles\", data=final_smiles.astype(object), dtype=dt_str, compression=\"gzip\")\n", " g_all.create_dataset(\"dose\", data=final_dose, compression=\"gzip\")\n", " g_all.create_dataset(\"plate_id\", data=final_plate.astype(object), dtype=dt_str, compression=\"gzip\")\n", " \n", " # 【最关键的元数据】用于后续动态 Dataset 划分\n", " g_all.create_dataset(\"split_id\", data=final_split_id, compression=\"gzip\")\n", "\n", "# ===========================================================\n", "# 6. 验证 (Validation)\n", "# ===========================================================\n", "print(\"\\n=========== DONE ===========\")\n", "print(f\"HDF5 saved to: {os.path.abspath(output_h5)}\")\n", "print(f\"Final Data Shape: {final_target.shape}\")\n", "print(\"Split Distribution:\")\n", "unique, counts = np.unique(final_split_id, return_counts=True)\n", "print(dict(zip(unique, counts)))\n", "\n", "assert not np.isnan(final_target).any(), \"Error: NaN found in final output!\"\n", "print(\"Verification passed.\")" ] }, { "cell_type": "code", "execution_count": 12, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "\n", "===== Control Statistics =====\n", "Shape: (86844, 838)\n", "Min: -10.0\n", "Max: 10.0\n", "Mean: 0.12683004\n", "Median: 0.0\n", "Std: 1.5478053\n", "\n", "===== Target Statistics =====\n", "Shape: (86844, 838)\n", "Min: -10.0\n", "Max: 10.0\n", "Mean: 0.1153677\n", "Median: 0.0\n", "Std: 1.8243449\n" ] }, { "data": { "image/png": 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", "text/plain": [ "
" ] }, "metadata": {}, "output_type": "display_data" } ], "source": [ "import h5py\n", "import numpy as np\n", "import matplotlib.pyplot as plt\n", "\n", "h5_path = \"BBBC047_smiles_split_CP.h5\"\n", "\n", "with h5py.File(h5_path, \"r\") as f:\n", " morph_pre = f[\"combined/Control\"][:]\n", " morph_post = f[\"combined/Target\"][:]\n", "\n", "def summarize(arr, name):\n", " print(f\"\\n===== {name} Statistics =====\")\n", " print(\"Shape:\", arr.shape)\n", " print(\"Min:\", np.min(arr))\n", " print(\"Max:\", np.max(arr))\n", " print(\"Mean:\", np.mean(arr))\n", " print(\"Median:\", np.median(arr))\n", " print(\"Std:\", np.std(arr))\n", "\n", "summarize(morph_pre, \"Control\")\n", "summarize(morph_post, \"Target\")\n", "\n", "# -------- Plot hist distribution --------\n", "plt.figure(figsize=(10,5))\n", "plt.hist(morph_pre.flatten(), bins=200, alpha=0.6, label=\"morph_pre\")\n", "plt.hist(morph_post.flatten(), bins=200, alpha=0.6, label=\"morph_post\")\n", "plt.title(\"Distribution of Control & Target\")\n", "plt.xlabel(\"Value\")\n", "plt.ylabel(\"Frequency\")\n", "plt.legend()\n", "plt.grid(True)\n", "plt.show()\n" ] }, { "cell_type": "code", "execution_count": 13, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "\n", "===== Control Statistics =====\n", "Shape: (57692, 977)\n", "Min: -10.0\n", "Max: 10.0\n", "Mean: -0.008263751\n", "Median: 0.0\n", "Std: 1.3541602\n", "\n", "===== Target Statistics =====\n", "Shape: (57692, 977)\n", "Min: -10.0\n", "Max: 10.0\n", "Mean: -0.016291842\n", "Median: -0.0020430526\n", "Std: 1.9742315\n" ] }, { "data": { "image/png": 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" ] }, "metadata": {}, "output_type": "display_data" } ], "source": [ "import h5py\n", "import numpy as np\n", "import matplotlib.pyplot as plt\n", "\n", "h5_path = \"BBBC047_smiles_split_GE.h5\"\n", "\n", "with h5py.File(h5_path, \"r\") as f:\n", " morph_pre = f[\"combined/Control\"][:]\n", " morph_post = f[\"combined/Target\"][:]\n", "\n", "def summarize(arr, name):\n", " print(f\"\\n===== {name} Statistics =====\")\n", " print(\"Shape:\", arr.shape)\n", " print(\"Min:\", np.min(arr))\n", " print(\"Max:\", np.max(arr))\n", " print(\"Mean:\", np.mean(arr))\n", " print(\"Median:\", np.median(arr))\n", " print(\"Std:\", np.std(arr))\n", "\n", "summarize(morph_pre, \"Control\")\n", "summarize(morph_post, \"Target\")\n", "\n", "# -------- Plot hist distribution --------\n", "plt.figure(figsize=(10,5))\n", "plt.hist(morph_pre.flatten(), bins=200, alpha=0.6, label=\"morph_pre\")\n", "plt.hist(morph_post.flatten(), bins=200, alpha=0.6, label=\"morph_post\")\n", "plt.title(\"Distribution of Control & Target\")\n", "plt.xlabel(\"Value\")\n", "plt.ylabel(\"Frequency\")\n", "plt.legend()\n", "plt.grid(True)\n", "plt.show()\n" ] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": 11, "metadata": {}, "outputs": [ { "data": { "text/html": [ "
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" ], "text/plain": [ " dose Plate \\\n", "0 50.0 PAC001_U2OS_6H_X1_B1_UNI4445L \n", "1 12.7 PAC001_U2OS_6H_X1_B1_UNI4445L \n", "2 50.0 PAC001_U2OS_6H_X1_B1_UNI4445L \n", "3 16.2 PAC001_U2OS_6H_X1_B1_UNI4445L \n", "4 12.5 PAC001_U2OS_6H_X1_B1_UNI4445L \n", "\n", " SMILES 221227_x_at \\\n", "0 CC(C)[C@H](CO)Nc1nc(Nc2cc(N)cc(Cl)c2)c2ncn(C(C... -0.118505 \n", "1 Ic1cccc(CSc2nnc(o2)-c2ccncc2)c1 0.043264 \n", "2 Clc1cc(Cl)c(NC(=O)Nc2ccncc2)c(Cl)c1 -0.070805 \n", "3 COc1ccc(CNC(=O)Nc2ncc(s2)[N+]([O-])=O)cc1 0.027165 \n", "4 OC(=O)c1ccc2c3nc4ccccc4n3c(=O)c3cccc1c23 0.303294 \n", "\n", " 212345_s_at 218597_s_at 217140_s_at 209253_at 214404_x_at 219888_at \\\n", "0 -0.293445 -0.294088 0.292745 -0.145896 0.97358 0.247915 \n", "1 -0.264945 -0.000633 0.000935 0.177604 -0.50472 0.214315 \n", "2 0.195755 0.004606 -0.040855 -0.067346 -0.19872 -0.053195 \n", "3 -0.149545 0.173113 -0.100695 -0.309296 -0.20782 -0.323985 \n", "4 0.254455 -0.055418 -0.053635 0.000455 -0.10908 0.031425 \n", "\n", " ... 218397_at 202996_at 204608_at 211071_s_at 203341_at 202801_at \\\n", "0 ... -0.529905 0.804992 0.430269 -0.97559 -1.740605 0.340382 \n", "1 ... 0.228895 -0.381308 0.556969 0.25051 -0.025625 -0.024428 \n", "2 ... -0.031795 -0.051728 -0.017741 0.05681 0.130695 0.005919 \n", "3 ... -0.013787 -0.177608 0.219869 -0.16129 0.365195 -0.040848 \n", "4 ... -0.052585 -0.196108 0.245469 0.00784 0.093595 -0.303418 \n", "\n", " 206414_s_at 204978_at 205379_at 203897_at \n", "0 0.498778 0.352152 0.53591 0.52484 \n", "1 -0.225122 0.533052 -0.19329 -0.25436 \n", "2 -0.408722 -0.057177 -0.25699 0.31004 \n", "3 -0.251122 0.040732 0.17091 -0.05144 \n", "4 0.474878 -0.022947 -0.28589 0.06423 \n", "\n", "[5 rows x 980 columns]" ] }, "execution_count": 11, "metadata": {}, "output_type": "execute_result" } ], "source": [ "GE_CSV.head()" ] }, { "cell_type": "code", "execution_count": 12, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "检测到 977 个基因特征。\n", "Step 2: 执行 Log2 变换 (Log2(x+1))...\n", "警告:数据中包含负值,跳过 Log 变换(假设已经是 Log 后的数据)。\n", "Step 3: 执行基于 DMSO 的 Robust Z-score...\n", "Step 4: Clipping to [-10, 10]...\n" ] } ], "source": [ "import pandas as pd\n", "import numpy as np\n", "\n", "def process_gene_expression_data(df):\n", " \n", " # 1. 分离 Metadata 和 Genes\n", " # 假设前 4 列是 Metadata (dose, SMILES, Plate, etc.)\n", " # 实际情况请根据你的 CSV 调整\n", " metadata_cols = df.columns[:3]\n", " gene_cols = df.columns[3:]\n", " \n", " df_meta = df[metadata_cols]\n", " df_genes = df[gene_cols]\n", " \n", " print(f\"检测到 {len(gene_cols)} 个基因特征。\")\n", "\n", " # ==========================================\n", " # Step 1: 检查是否需要 CPM/TPM 标准化\n", " # ==========================================\n", " # 简单的启发式检查:如果最大值非常大 (>10000) 且是整数,可能是 Raw Counts\n", " if df_genes.max().max() > 10000 and df_genes.dtypes[0] == 'int64':\n", " print(\"检测到 Raw Counts,正在执行 CPM 标准化...\")\n", " # CPM = (counts / total_counts) * 1e6\n", " library_sizes = df_genes.sum(axis=1)\n", " df_genes = df_genes.div(library_sizes, axis=0) * 1e6\n", " \n", " # ==========================================\n", " # Step 2: Log2 变换 (Log2(x+1))\n", " # ==========================================\n", " print(\"Step 2: 执行 Log2 变换 (Log2(x+1))...\")\n", " # 确保没有负数 (基因表达量不应为负,除了已经标准化过的数据)\n", " if df_genes.min().min() >= 0:\n", " df_genes_log = np.log2(df_genes + 1)\n", " else:\n", " print(\"警告:数据中包含负值,跳过 Log 变换(假设已经是 Log 后的数据)。\")\n", " df_genes_log = df_genes\n", "\n", " # ==========================================\n", " # Step 3: Robust Z-score based on DMSO\n", " # ==========================================\n", " print(\"Step 3: 执行基于 DMSO 的 Robust Z-score...\")\n", " \n", " # 寻找 DMSO\n", " dmso_mask = df_meta['SMILES'].astype(str).str.contains('DMSO', case=False, na=False)\n", " \n", " # 如果是 L1000 数据,通常是按 Plate 进行标准化的。\n", " # 为了简化,这里演示全局 DMSO 标准化。\n", " # 进阶建议:如果 Metadata_Plate 存在,最好做一个 groupby('Metadata_Plate') 的循环处理。\n", " \n", " if not dmso_mask.any():\n", " raise ValueError(\"未找到 DMSO 对照组!\")\n", " \n", " dmso_data = df_genes_log.loc[dmso_mask]\n", " \n", " # 计算统计量\n", " medians = dmso_data.median()\n", " mads = (dmso_data - medians).abs().median()\n", " \n", " # 安全处理 MAD=0\n", " mads_safe = mads.replace(0, 1e-6)\n", " \n", " # 标准化\n", " df_genes_scaled = (df_genes_log - medians) / (mads_safe * 1.4826)\n", " \n", " # ==========================================\n", " # Step 4: 极值截断 (Clipping)\n", " # ==========================================\n", " # 基因表达通常不会像图像特征那样爆炸,但为了 Transformer 的稳定性,截断依然是好习惯\n", " # Z-score > 10 意味着极其离谱的表达量变化,通常是噪音\n", " print(\"Step 4: Clipping to [-10, 10]...\")\n", " df_genes_final = df_genes_scaled.clip(-10, 10)\n", "\n", " # 合并保存\n", " df_output = pd.concat([df_meta, df_genes_final], axis=1)\n", " return df_output\n", " # df_output.to_csv(output_file, index=False)\n", " # print(f\"处理完成,保存至: {output_file}\")\n", "\n", "# --- 执行 ---\n", "if __name__ == \"__main__\":\n", " df_GE = process_gene_expression_data(GE_CSV)" ] }, { "cell_type": "code", "execution_count": 13, "metadata": {}, "outputs": [ { "data": { "text/html": [ "
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SMILESMetadata_moaMetadata_mmoles_per_liter2Metadata_PlateCells_AreaShape_CompactnessCells_AreaShape_ExtentCells_AreaShape_FormFactorCells_AreaShape_MaxFeretDiameterCells_AreaShape_MaximumRadiusCells_AreaShape_Solidity...Nuclei_Texture_SumEntropy_DNA_5_0Nuclei_Texture_SumEntropy_ER_3_0Nuclei_Texture_SumEntropy_Mito_3_0Nuclei_Texture_SumEntropy_RNA_5_0Nuclei_Texture_SumVariance_ER_3_0Nuclei_Texture_SumVariance_Mito_5_0Nuclei_Texture_SumVariance_RNA_10_0Nuclei_Texture_Variance_AGP_5_0Nuclei_Texture_Variance_ER_5_0Nuclei_Texture_Variance_RNA_5_0
0CCCOc1cc(N)ccc1C(=O)OCCN(CC)CClocal anesthetic6.05242771.798728-1.067827-1.3908692.3426742.1911470.603093...0.5540602.3499770.0607780.611735-0.5273890.040127-0.110624-2.284495-1.438048-0.403544
1COc1cc(C)cc(OC)c1[C@@H]1C=C(C)CC[C@H]1C(C)=Ccannabinoid receptor antagonist10.00242770.3030870.574654-0.1846270.9679080.6067411.175119...0.1581812.434973-0.1336890.383268-0.312258-0.275593-0.232614-1.437120-0.8580000.206142
2COc1cc(O)cc(\\C=C\\c2ccccc2)c1None10.0024277-0.7811050.5069800.992217-0.0721190.4153980.774680...0.5965721.8004340.2236770.4432260.2202240.476239-0.5825150.397441-0.1360950.428414
3COc1c(O)cc2C(=O)O[C@H]3[C@@H](O)[C@H](O)[C@@H]...interleukin inhibitor10.00242772.918283-2.266905-0.3112732.6589382.0500041.240017...1.8055711.4343230.1651601.5574040.087928-0.0899720.819127-0.750117-0.1980891.703560
4CCOc1ccc2ccccc2c1C(=O)N[C@H]1[C@H]2SC(C)(C)[C@...bacterial cell wall synthesis inhibitor4.39242771.739474-0.1287710.5242322.5953052.7006461.711957...2.4675932.6255430.5831851.8861841.5575830.9697221.797292-0.0857590.7630472.259479
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5 rows × 745 columns

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" ], "text/plain": [ " SMILES \\\n", "0 CCCOc1cc(N)ccc1C(=O)OCCN(CC)CC \n", "1 COc1cc(C)cc(OC)c1[C@@H]1C=C(C)CC[C@H]1C(C)=C \n", "2 COc1cc(O)cc(\\C=C\\c2ccccc2)c1 \n", "3 COc1c(O)cc2C(=O)O[C@H]3[C@@H](O)[C@H](O)[C@@H]... \n", "4 CCOc1ccc2ccccc2c1C(=O)N[C@H]1[C@H]2SC(C)(C)[C@... \n", "\n", " Metadata_moa Metadata_mmoles_per_liter2 \\\n", "0 local anesthetic 6.05 \n", "1 cannabinoid receptor antagonist 10.00 \n", "2 None 10.00 \n", "3 interleukin inhibitor 10.00 \n", "4 bacterial cell wall synthesis inhibitor 4.39 \n", "\n", " Metadata_Plate Cells_AreaShape_Compactness Cells_AreaShape_Extent \\\n", "0 24277 1.798728 -1.067827 \n", "1 24277 0.303087 0.574654 \n", "2 24277 -0.781105 0.506980 \n", "3 24277 2.918283 -2.266905 \n", "4 24277 1.739474 -0.128771 \n", "\n", " Cells_AreaShape_FormFactor Cells_AreaShape_MaxFeretDiameter \\\n", "0 -1.390869 2.342674 \n", "1 -0.184627 0.967908 \n", "2 0.992217 -0.072119 \n", "3 -0.311273 2.658938 \n", "4 0.524232 2.595305 \n", "\n", " Cells_AreaShape_MaximumRadius Cells_AreaShape_Solidity ... \\\n", "0 2.191147 0.603093 ... \n", "1 0.606741 1.175119 ... \n", "2 0.415398 0.774680 ... \n", "3 2.050004 1.240017 ... \n", "4 2.700646 1.711957 ... \n", "\n", " Nuclei_Texture_SumEntropy_DNA_5_0 Nuclei_Texture_SumEntropy_ER_3_0 \\\n", "0 0.554060 2.349977 \n", "1 0.158181 2.434973 \n", "2 0.596572 1.800434 \n", "3 1.805571 1.434323 \n", "4 2.467593 2.625543 \n", "\n", " Nuclei_Texture_SumEntropy_Mito_3_0 Nuclei_Texture_SumEntropy_RNA_5_0 \\\n", "0 0.060778 0.611735 \n", "1 -0.133689 0.383268 \n", "2 0.223677 0.443226 \n", "3 0.165160 1.557404 \n", "4 0.583185 1.886184 \n", "\n", " Nuclei_Texture_SumVariance_ER_3_0 Nuclei_Texture_SumVariance_Mito_5_0 \\\n", "0 -0.527389 0.040127 \n", "1 -0.312258 -0.275593 \n", "2 0.220224 0.476239 \n", "3 0.087928 -0.089972 \n", "4 1.557583 0.969722 \n", "\n", " Nuclei_Texture_SumVariance_RNA_10_0 Nuclei_Texture_Variance_AGP_5_0 \\\n", "0 -0.110624 -2.284495 \n", "1 -0.232614 -1.437120 \n", "2 -0.582515 0.397441 \n", "3 0.819127 -0.750117 \n", "4 1.797292 -0.085759 \n", "\n", " Nuclei_Texture_Variance_ER_5_0 Nuclei_Texture_Variance_RNA_5_0 \n", "0 -1.438048 -0.403544 \n", "1 -0.858000 0.206142 \n", "2 -0.136095 0.428414 \n", "3 -0.198089 1.703560 \n", "4 0.763047 2.259479 \n", "\n", "[5 rows x 745 columns]" ] }, "execution_count": 13, "metadata": {}, "output_type": "execute_result" } ], "source": [ "# SMILES列移动到第一列\n", "\n", "if 'SMILES' in df_CP.columns:\n", " cols = df_CP.columns.tolist()\n", " cols.insert(0, cols.pop(cols.index('SMILES')))\n", " df_CP = df_CP[cols]\n", "\n", "df_CP.head()" ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "# 规范化SMILES" ] }, { "cell_type": "code", "execution_count": 14, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "最终 SMILES 唯一值数量: 20342\n" ] } ], "source": [ "final_smiles = df_CP['SMILES'].unique()\n", "print(f\"最终 SMILES 唯一值数量: {len(final_smiles)}\")" ] }, { "cell_type": "code", "execution_count": 15, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "最终 SMILES 唯一值数量: 20342\n" ] } ], "source": [ "import pandas as pd\n", "from rdkit import Chem\n", "\n", "def canonicalize_smiles(smiles):\n", " \"\"\"尝试将一个 SMILES 转换为规范化形式,忽略 DMSO\"\"\"\n", " if pd.isna(smiles): \n", " return smiles\n", " if str(smiles).upper() == \"DMSO\": # 特殊情况,直接跳过\n", " return \"DMSO\"\n", " try:\n", " mol = Chem.MolFromSmiles(smiles)\n", " if mol is not None:\n", " return Chem.MolToSmiles(mol)\n", " else:\n", " return smiles\n", " except:\n", " return smiles\n", "\n", "# 应用到整列\n", "df_CP['SMILES'] = df_CP['SMILES'].apply(canonicalize_smiles)\n", "\n", "# 查看结果\n", "final_smiles = df_CP['SMILES'].unique()\n", "print(f\"最终 SMILES 唯一值数量: {len(final_smiles)}\")" ] }, { "cell_type": "code", "execution_count": 16, "metadata": {}, "outputs": [], "source": [ "# 假设你想把 'old_name1' 改成 'new_name1','old_name2' 改成 'new_name2'\n", "df_CP = df_CP.rename(columns={\n", " 'Metadata_mmoles_per_liter2': 'dose',\n", " 'Metadata_Plate': 'Plate'\n", "})" ] }, { "cell_type": "code", "execution_count": 17, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "最终 SMILES 唯一值数量: 20342\n" ] }, { "data": { "text/html": [ "
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" ], "text/plain": [ " dose Plate \\\n", "0 50.0 PAC001_U2OS_6H_X1_B1_UNI4445L \n", "1 12.7 PAC001_U2OS_6H_X1_B1_UNI4445L \n", "2 50.0 PAC001_U2OS_6H_X1_B1_UNI4445L \n", "3 16.2 PAC001_U2OS_6H_X1_B1_UNI4445L \n", "4 12.5 PAC001_U2OS_6H_X1_B1_UNI4445L \n", "\n", " SMILES 221227_x_at \\\n", "0 CC(C)[C@H](CO)Nc1nc(Nc2cc(N)cc(Cl)c2)c2ncn(C(C... -0.718409 \n", "1 Ic1cccc(CSc2nnc(-c3ccncc3)o2)c1 0.253430 \n", "2 O=C(Nc1ccncc1)Nc1c(Cl)cc(Cl)cc1Cl -0.431849 \n", "3 COc1ccc(CNC(=O)Nc2ncc([N+](=O)[O-])s2)cc1 0.156709 \n", "4 O=C(O)c1ccc2c3c1cccc3c(=O)n1c3ccccc3nc21 1.815569 \n", "\n", " 212345_s_at 218597_s_at 217140_s_at 209253_at 214404_x_at 219888_at \\\n", "0 -1.412662 -1.777799 1.890969 -0.686329 3.356343 1.075315 \n", "1 -1.271711 -0.036673 0.028366 0.739463 -1.707844 0.935368 \n", "2 1.006752 -0.005589 -0.238377 -0.340128 -0.659585 -0.178832 \n", "3 -0.700982 0.994199 -0.620332 -1.406496 -0.690759 -1.306693 \n", "4 1.297062 -0.361718 -0.319951 -0.041302 -0.352507 0.173617 \n", "\n", " ... 218397_at 202996_at 204608_at 211071_s_at 203341_at 202801_at \\\n", "0 ... -1.717976 3.902234 1.456811 -3.779831 -10.000000 1.271066 \n", "1 ... 0.671731 -1.828476 1.888788 0.915792 -0.224897 -0.052488 \n", "2 ... -0.149266 -0.236360 -0.070655 0.173975 0.885048 0.057613 \n", "3 ... -0.092553 -0.844454 0.739464 -0.661288 2.550107 -0.112061 \n", "4 ... -0.214741 -0.933822 0.826746 -0.013567 0.621621 -1.064682 \n", "\n", " 206414_s_at 204978_at 205379_at 203897_at \n", "0 2.485811 1.176754 2.000332 2.497287 \n", "1 -1.118856 1.812681 -0.634178 -1.210292 \n", "2 -2.033094 -0.262186 -0.864318 1.475228 \n", "3 -1.248323 0.082003 0.681632 -0.244761 \n", "4 2.366801 -0.141855 -0.968730 0.305618 \n", "\n", "[5 rows x 980 columns]" ] }, "execution_count": 17, "metadata": {}, "output_type": "execute_result" } ], "source": [ "final_smiles = df_GE['SMILES'].unique()\n", "\n", "# 应用到整列\n", "df_GE['SMILES'] = df_GE['SMILES'].apply(canonicalize_smiles)\n", "\n", "# 查看结果\n", "final_smiles = df_GE['SMILES'].unique()\n", "print(f\"最终 SMILES 唯一值数量: {len(final_smiles)}\")\n", "\n", "df_GE.head()" ] }, { "cell_type": "code", "execution_count": 18, "metadata": {}, "outputs": [ { "data": { "text/html": [ "
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" ], "text/plain": [ " SMILES dose Plate \\\n", "0 CCCOc1cc(N)ccc1C(=O)OCCN(CC)CC 6.05 24277 \n", "1 C=C(C)[C@@H]1CCC(C)=C[C@H]1c1c(OC)cc(C)cc1OC 10.00 24277 \n", "2 COc1cc(O)cc(/C=C/c2ccccc2)c1 10.00 24277 \n", "3 COc1c(O)cc2c(c1O)[C@H]1O[C@H](CO)[C@@H](O)[C@H... 10.00 24277 \n", "4 CCOc1ccc2ccccc2c1C(=O)N[C@@H]1C(=O)N2[C@@H]1SC... 4.39 24277 \n", "\n", " Cells_AreaShape_Compactness Cells_AreaShape_Extent \\\n", "0 1.798728 -1.067827 \n", "1 0.303087 0.574654 \n", "2 -0.781105 0.506980 \n", "3 2.918283 -2.266905 \n", "4 1.739474 -0.128771 \n", "\n", " Cells_AreaShape_FormFactor Cells_AreaShape_MaxFeretDiameter \\\n", "0 -1.390869 2.342674 \n", "1 -0.184627 0.967908 \n", "2 0.992217 -0.072119 \n", "3 -0.311273 2.658938 \n", "4 0.524232 2.595305 \n", "\n", " Cells_AreaShape_MaximumRadius Cells_AreaShape_Solidity \\\n", "0 2.191147 0.603093 \n", "1 0.606741 1.175119 \n", "2 0.415398 0.774680 \n", "3 2.050004 1.240017 \n", "4 2.700646 1.711957 \n", "\n", " Cells_AreaShape_Zernike_0_0 ... Nuclei_Texture_SumEntropy_DNA_5_0 \\\n", "0 -1.579134 ... 0.554060 \n", "1 -0.233026 ... 0.158181 \n", "2 0.685892 ... 0.596572 \n", "3 -2.649614 ... 1.805571 \n", "4 -1.661281 ... 2.467593 \n", "\n", " Nuclei_Texture_SumEntropy_ER_3_0 Nuclei_Texture_SumEntropy_Mito_3_0 \\\n", "0 2.349977 0.060778 \n", "1 2.434973 -0.133689 \n", "2 1.800434 0.223677 \n", "3 1.434323 0.165160 \n", "4 2.625543 0.583185 \n", "\n", " Nuclei_Texture_SumEntropy_RNA_5_0 Nuclei_Texture_SumVariance_ER_3_0 \\\n", "0 0.611735 -0.527389 \n", "1 0.383268 -0.312258 \n", "2 0.443226 0.220224 \n", "3 1.557404 0.087928 \n", "4 1.886184 1.557583 \n", "\n", " Nuclei_Texture_SumVariance_Mito_5_0 Nuclei_Texture_SumVariance_RNA_10_0 \\\n", "0 0.040127 -0.110624 \n", "1 -0.275593 -0.232614 \n", "2 0.476239 -0.582515 \n", "3 -0.089972 0.819127 \n", "4 0.969722 1.797292 \n", "\n", " Nuclei_Texture_Variance_AGP_5_0 Nuclei_Texture_Variance_ER_5_0 \\\n", "0 -2.284495 -1.438048 \n", "1 -1.437120 -0.858000 \n", "2 0.397441 -0.136095 \n", "3 -0.750117 -0.198089 \n", "4 -0.085759 0.763047 \n", "\n", " Nuclei_Texture_Variance_RNA_5_0 \n", "0 -0.403544 \n", "1 0.206142 \n", "2 0.428414 \n", "3 1.703560 \n", "4 2.259479 \n", "\n", "[5 rows x 744 columns]" ] }, "execution_count": 18, "metadata": {}, "output_type": "execute_result" } ], "source": [ "# df_CP 删除 Metadata_moa 这列\n", "df_CP.drop(columns=['Metadata_moa'], inplace=True)\n", "df_CP.head() " ] }, { "cell_type": "code", "execution_count": 19, "metadata": {}, "outputs": [], "source": [ "# save to parquet\n", "\n", "df_CP.to_parquet('Step2_CP_cleaned.parquet', index=False)\n", "df_GE.to_parquet('Step2_GE_cleaned.parquet', index=False)" ] }, { "cell_type": "code", "execution_count": 21, "metadata": {}, "outputs": [ { "data": { "text/html": [ "
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" ], "text/plain": [ " dose Plate \\\n", "0 50.0 PAC001_U2OS_6H_X1_B1_UNI4445L \n", "1 12.7 PAC001_U2OS_6H_X1_B1_UNI4445L \n", "2 50.0 PAC001_U2OS_6H_X1_B1_UNI4445L \n", "3 16.2 PAC001_U2OS_6H_X1_B1_UNI4445L \n", "4 12.5 PAC001_U2OS_6H_X1_B1_UNI4445L \n", "\n", " SMILES 221227_x_at \\\n", "0 CC(C)[C@H](CO)Nc1nc(Nc2cc(N)cc(Cl)c2)c2ncn(C(C... -0.718409 \n", "1 Ic1cccc(CSc2nnc(-c3ccncc3)o2)c1 0.253430 \n", "2 O=C(Nc1ccncc1)Nc1c(Cl)cc(Cl)cc1Cl -0.431849 \n", "3 COc1ccc(CNC(=O)Nc2ncc([N+](=O)[O-])s2)cc1 0.156709 \n", "4 O=C(O)c1ccc2c3c1cccc3c(=O)n1c3ccccc3nc21 1.815569 \n", "\n", " 212345_s_at 218597_s_at 217140_s_at 209253_at 214404_x_at 219888_at \\\n", "0 -1.412662 -1.777799 1.890969 -0.686329 3.356343 1.075315 \n", "1 -1.271711 -0.036673 0.028366 0.739463 -1.707844 0.935368 \n", "2 1.006752 -0.005589 -0.238377 -0.340128 -0.659585 -0.178832 \n", "3 -0.700982 0.994199 -0.620332 -1.406496 -0.690759 -1.306693 \n", "4 1.297062 -0.361718 -0.319951 -0.041302 -0.352507 0.173617 \n", "\n", " ... 218397_at 202996_at 204608_at 211071_s_at 203341_at 202801_at \\\n", "0 ... -1.717976 3.902234 1.456811 -3.779831 -10.000000 1.271066 \n", "1 ... 0.671731 -1.828476 1.888788 0.915792 -0.224897 -0.052488 \n", "2 ... -0.149266 -0.236360 -0.070655 0.173975 0.885048 0.057613 \n", "3 ... -0.092553 -0.844454 0.739464 -0.661288 2.550107 -0.112061 \n", "4 ... -0.214741 -0.933822 0.826746 -0.013567 0.621621 -1.064682 \n", "\n", " 206414_s_at 204978_at 205379_at 203897_at \n", "0 2.485811 1.176754 2.000332 2.497287 \n", "1 -1.118856 1.812681 -0.634178 -1.210292 \n", "2 -2.033094 -0.262186 -0.864318 1.475228 \n", "3 -1.248323 0.082003 0.681632 -0.244761 \n", "4 2.366801 -0.141855 -0.968730 0.305618 \n", "\n", "[5 rows x 980 columns]" ] }, "execution_count": 21, "metadata": {}, "output_type": "execute_result" } ], "source": [ "df_GE.head()" ] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "正在处理 Cell Painting 数据...\n", "原始形状: (113416, 744)\n", "Cell Painting 处理完毕。最终样本对数量: 86844\n", "CP 数据已保存到 ./Processed_Paired_CP_KeepRep.h5 (包含 dose)\n", "\n", "正在处理 Gene Expression 数据...\n", "原始形状: (61313, 980)\n", "警告: 发现 143 个样本所在的 Plate 没有 DMSO。使用全局 DMSO 中位数填充。\n", "Gene Expression 处理完毕。最终样本对数量: 57835\n", "GE 数据已保存到 ./Processed_Paired_GE_KeepRep.h5 (包含 dose)\n", "------------------------------\n", "最终数据形状检查:\n", "CP Smiles: (86844,), Control: (86844, 741), Target: (86844, 741), Dose: (86844,)\n", "GE Smiles: (57835,), Control: (57835, 977), Target: (57835, 977), Dose: (57835,)\n" ] }, { "ename": "", "evalue": "", "output_type": "error", "traceback": [ "\u001b[1;31m在当前单元格或上一个单元格中执行代码时 Kernel 崩溃。\n", "\u001b[1;31m请查看单元格中的代码,以确定故障的可能原因。\n", "\u001b[1;31m单击此处了解详细信息。\n", "\u001b[1;31m有关更多详细信息,请查看 Jupyter log。" ] } ], "source": [ "import pandas as pd\n", "import numpy as np\n", "import h5py\n", "\n", "# ==========================================\n", "# 通用函数:处理对齐逻辑 (方案 1: 保留 Target 重复 + Control 中位数)\n", "# ==========================================\n", "def process_alignment_keep_replicates(df, data_cols, modality_name):\n", " print(f\"正在处理 {modality_name} 数据...\")\n", " print(f\"原始形状: {df.shape}\")\n", " \n", " # 1. 类型转换 (省内存)\n", " # 也就是除了 Plate, SMILES, pert_dose 之外的所有列\n", " df[data_cols] = df[data_cols].astype(np.float32)\n", "\n", " # 2. 分离 Control (DMSO) 和 Target (非 DMSO)\n", " df_dmso = df[df['SMILES'] == 'DMSO'].copy()\n", " df_target = df[df['SMILES'] != 'DMSO'].copy()\n", " \n", " # 3. 计算 Control 基准向量 (按 Plate 分组取中位数)\n", " # 使用中位数 (median) 比均值 (mean) 更抗干扰\n", " plate_controls = df_dmso.groupby('Plate')[data_cols].median().reset_index()\n", " \n", " # 计算全局 Control 中位数 (用于填补那些没有 DMSO 的板)\n", " if not df_dmso.empty:\n", " global_control = df_dmso[data_cols].median().values.astype(np.float32)\n", " else:\n", " print(f\"警告: {modality_name} 数据中完全没有 DMSO,将使用全 0 填充!\")\n", " global_control = np.zeros(len(data_cols), dtype=np.float32)\n", "\n", " # 4. 执行对齐 (Merge 操作)\n", " # 将计算好的 Plate Control 匹配回每一个 Target 样本\n", " # suffixes=['', '_ctrl'] 表示 Target 数据列名不变,Control 数据列名加后缀\n", " merged_df = pd.merge(\n", " df_target, \n", " plate_controls, \n", " on='Plate', \n", " how='left', \n", " suffixes=('', '_ctrl')\n", " )\n", " \n", " # 5. 处理缺失的 Control (即某些 Plate 没有 DMSO 的情况)\n", " # 找出 Merge 后 Control 列为 NaN 的行\n", " ctrl_cols = [f\"{col}_ctrl\" for col in data_cols]\n", " \n", " # 检查是否有缺失 Control 的行\n", " missing_mask = merged_df[ctrl_cols[0]].isna()\n", " missing_count = missing_mask.sum()\n", " \n", " if missing_count > 0:\n", " print(f\"警告: 发现 {missing_count} 个样本所在的 Plate 没有 DMSO。使用全局 DMSO 中位数填充。\")\n", " # 填充 NaN\n", " # 构建一个临时的 DataFrame 来填充,列名要对应\n", " # global_fill_values = pd.DataFrame([global_control], columns=ctrl_cols, index=[0]) \n", " # 优化:直接定位赋值\n", " for i, col in enumerate(ctrl_cols):\n", " merged_df.loc[missing_mask, col] = global_control[i]\n", "\n", " # 6. 提取最终数组\n", " # Target 数据 (原始特征)\n", " target_data = merged_df[data_cols].values.astype(np.float32)\n", " # Control 数据 (对应的板内中位数)\n", " control_data = merged_df[ctrl_cols].values.astype(np.float32)\n", " # SMILES\n", " smiles_data = merged_df['SMILES'].values.astype('S') # 转为字节串\n", " \n", " # --- [新增] 提取 Dose ---\n", " # 假设 'dose' 列在 df_target 中本身就是数值型。如果含字符串需另行处理。\n", " if 'dose' in merged_df.columns:\n", " dose_data = merged_df['dose'].values.astype(np.float32)\n", " else:\n", " raise ValueError(f\"错误: 在 {modality_name} 数据中找不到 'dose' 列!\")\n", " \n", " print(f\"{modality_name} 处理完毕。最终样本对数量: {len(smiles_data)}\")\n", " \n", " # --- [修改] 返回值增加了 dose_data ---\n", " return smiles_data, control_data, target_data, dose_data\n", "\n", "# ==========================================\n", "# 1. 处理 Cell Painting (CP)\n", "# ==========================================\n", "# 读取清洗后的数据\n", "cp_path = 'Step2_CP_cleaned.parquet'\n", "df_cp = pd.read_parquet(cp_path)\n", "\n", "# 识别特征列 (排除元数据)\n", "cp_meta_cols = ['SMILES', 'Plate', 'dose']\n", "cp_features = [c for c in df_cp.columns if c not in cp_meta_cols]\n", "\n", "# 执行处理 (接收 4 个返回值)\n", "cp_smiles, cp_control, cp_target, cp_dose = process_alignment_keep_replicates(df_cp, cp_features, \"Cell Painting\")\n", "\n", "# 保存 CP 结果\n", "with h5py.File('./Processed_Paired_CP_KeepRep.h5', 'w') as f:\n", " f.create_dataset('canonical_smiles', data=cp_smiles)\n", " f.create_dataset('control', data=cp_control, dtype=np.float32)\n", " f.create_dataset('target', data=cp_target, dtype=np.float32)\n", " f.create_dataset('dose', data=cp_dose, dtype=np.float32) # [新增] 保存 Dose\n", "print(\"CP 数据已保存到 ./Processed_Paired_CP_KeepRep.h5 (包含 dose)\\n\")\n", "\n", "# ==========================================\n", "# 2. 处理 Gene Expression (GE)\n", "# ==========================================\n", "# 读取清洗后的数据\n", "ge_path = './Step2_GE_cleaned.parquet'\n", "df_ge = pd.read_parquet(ge_path)\n", "\n", "# 识别特征列\n", "ge_meta_cols = ['SMILES', 'Plate', 'dose'] \n", "ge_features = [c for c in df_ge.columns if c not in ge_meta_cols]\n", "\n", "# 执行处理 (接收 4 个返回值)\n", "ge_smiles, ge_control, ge_target, ge_dose = process_alignment_keep_replicates(df_ge, ge_features, \"Gene Expression\")\n", "\n", "# 保存 GE 结果\n", "with h5py.File('./Processed_Paired_GE_KeepRep.h5', 'w') as f:\n", " f.create_dataset('canonical_smiles', data=ge_smiles)\n", " f.create_dataset('control', data=ge_control, dtype=np.float32)\n", " f.create_dataset('target', data=ge_target, dtype=np.float32)\n", " f.create_dataset('dose', data=ge_dose, dtype=np.float32) # [新增] 保存 Dose\n", "print(\"GE 数据已保存到 ./Processed_Paired_GE_KeepRep.h5 (包含 dose)\")\n", "\n", "# ==========================================\n", "# 3. 验证数据形状\n", "# ==========================================\n", "print(\"-\" * 30)\n", "print(\"最终数据形状检查:\")\n", "print(f\"CP Smiles: {cp_smiles.shape}, Control: {cp_control.shape}, Target: {cp_target.shape}, Dose: {cp_dose.shape}\")\n", "print(f\"GE Smiles: {ge_smiles.shape}, Control: {ge_control.shape}, Target: {ge_target.shape}, Dose: {ge_dose.shape}\")" ] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [] } ], "metadata": { "kernelspec": { "display_name": "boom", "language": "python", "name": "python3" }, "language_info": { "codemirror_mode": { "name": "ipython", "version": 3 }, "file_extension": ".py", "mimetype": "text/x-python", "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", "version": "3.11.10" } }, "nbformat": 4, "nbformat_minor": 2 }