Upload dataset with 3 sub-datasets: ms-dial, mass_spec_gym, gnps_mona_massbank
Browse files- .DS_Store +0 -0
- .gitattributes +1 -0
- README.md +29 -0
- gnps_massbank_mona/gnps_massbank_mona.csv +3 -0
- mass_sepc_gym/MassSpecGym_lipid.csv +3 -0
- ms-dial/.DS_Store +0 -0
- ms-dial/msdial_ms2_lipid.csv +3 -0
.DS_Store
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Binary file (6.15 kB). View file
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.gitattributes
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@@ -57,3 +57,4 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
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# Video files - compressed
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*.mp4 filter=lfs diff=lfs merge=lfs -text
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*.webm filter=lfs diff=lfs merge=lfs -text
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# Video files - compressed
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*.mp4 filter=lfs diff=lfs merge=lfs -text
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*.webm filter=lfs diff=lfs merge=lfs -text
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*.csv filter=lfs diff=lfs merge=lfs -text
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README.md
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#### MS DIAL (only lipidome atlas)
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Source: [Supplementary information](https://www.nature.com/articles/s41587-020-0531-2#Sec17) of Tsugawa, H., Ikeda, K., Takahashi, M. et al. A lipidome atlas in MS-DIAL 4. Nat Biotechnol 38, 1159–1163 (2020). https://doi.org/10.1038/s41587-020-0531-2
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Intruments: TOF
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* Complete MS DIAL DB (not only lipids): https://zenodo.org/records/10953284
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#### MassSpecGym:
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Source: https://huggingface.co/datasets/roman-bushuiev/MassSpecGym
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Instruments: TOF, Orbitrap
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#### GNPS
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Source: https://external.gnps2.org/gnpslibrary
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#### MassBank
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Source: https://external.gnps2.org/gnpslibrary
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#### PNNL-LIPIDS
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Source: https://external.gnps2.org/gnpslibrary
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#### MONA
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Source: https://external.gnps2.org/gnpslibrary
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#### Li Lab Lipid Standrad:
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Source: Li Lab
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gnps_massbank_mona/gnps_massbank_mona.csv
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version https://git-lfs.github.com/spec/v1
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oid sha256:91abe2b08a19886b500e040e2ebaaf999a0d1c4478c0b9a58f5f19b7883d54ef
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size 1456470
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mass_sepc_gym/MassSpecGym_lipid.csv
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version https://git-lfs.github.com/spec/v1
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oid sha256:53361a5cc82c227185bf51fafe54d9f06df712f6576375e8b73e3b1fe18fe1f2
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size 15956302
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ms-dial/.DS_Store
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Binary file (6.15 kB). View file
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ms-dial/msdial_ms2_lipid.csv
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version https://git-lfs.github.com/spec/v1
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oid sha256:fa7c161726ee60a0fdc4c6f80bf6c0764b60336ec98541c41972f97a8376fe34
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size 282358745
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