diff --git a/ATTRIBUTION.md b/ATTRIBUTION.md index d761c6037d67cc909a914e68ada5dc9922edffa6..64e8f633547559ff71eb87ead15b81cf68e6b1c9 100644 --- a/ATTRIBUTION.md +++ b/ATTRIBUTION.md @@ -56,3 +56,14 @@ Existing data objects were copied byte-for-byte. Their per-task manifests record - [sleep-edf: original data guide](https://huggingface.co/datasets/BrainPilot-Bench/Tasks-Data-Public/blob/a8a8adc87bab8d63253816dad0ae5c435e96a5f6/sleep-edf/README.md) - [tops-fmri: original data guide](https://huggingface.co/datasets/BrainPilot-Bench/Tasks-Data-Public/blob/a8a8adc87bab8d63253816dad0ae5c435e96a5f6/tops-fmri/README.md) - [neuro-rsc-place-cell: original data guide](https://huggingface.co/datasets/BrainPilot-Bench/Tasks-Data-Public/blob/a8a8adc87bab8d63253816dad0ae5c435e96a5f6/neuro-rsc-place-cell/README.md) + +## Mouse behavior tasks + +CalMS21 and MABe22 retain source-specific noncommercial Creative Commons licenses. +These are not Apache-licensed dataset bodies. Each task NOTICE records the original licenses, sources and changes. + +- [calms21-classic-classification](tasks/animal-behavior/calms21-classic-classification/NOTICE.md) +- [calms21-annotation-style-transfer](tasks/animal-behavior/calms21-annotation-style-transfer/NOTICE.md) +- [calms21-few-shot-behavior](tasks/animal-behavior/calms21-few-shot-behavior/NOTICE.md) +- [mabe22-representation-classification](tasks/animal-behavior/mabe22-representation-classification/NOTICE.md) +- [mabe22-supervised-segmentation](tasks/animal-behavior/mabe22-supervised-segmentation/NOTICE.md) diff --git a/tasks/animal-behavior/calms21-annotation-style-transfer/NOTICE.md b/tasks/animal-behavior/calms21-annotation-style-transfer/NOTICE.md new file mode 100644 index 0000000000000000000000000000000000000000..eff3b1e3cc32ee56c96efa3b20c60cd0aeed4bca --- /dev/null +++ b/tasks/animal-behavior/calms21-annotation-style-transfer/NOTICE.md @@ -0,0 +1,52 @@ +# CalMS21 annotation style: data notice + +Task: `calms21-annotation-style-transfer`. +This notice covers the public and evaluator data packages. The repository software license does not replace these data terms. + +## Source and attribution + +Source: [Caltech Mouse Social Interactions (CalMS21) Dataset, version 1.0](https://doi.org/10.22002/D1.1991). +The source record credits Jennifer J. Sun, Tomomi Karigo, David J. Anderson, Pietro Perona, Yisong Yue, and Ann Kennedy. + +Citation: Jennifer J. Sun and coauthors, *The Multi-Agent Behavior Dataset: Mouse Dyadic Social Interactions* (2021). +The [paper](https://arxiv.org/abs/2104.02710) supplies the complete author list and dataset description. + +This package derives from `task2_annotation_styles.zip` at the [official record](https://data.caltech.edu/records/s0vdx-0k302). +Its SHA-256 is `07af9c3a18157a072755c1d1987103f8927e4de5e8996a22a6af25add59b10ab`. +Its published MD5 is `c97e87e13e77ffb80c073e05c05a4683`, and its size is 912,092,847 bytes. +The [pinned source protocol](https://github.com/NeuroAIHub/BrainPilotBench/blob/8b59add4c9d02a324f61606ac8db1ccbe7fbe94e/tasks/animal-behavior/calms21-annotation-style-transfer/protocol.json) records these bindings. + +## License basis + +The [paper's hosting appendix and datasheet](https://arxiv.org/html/2104.02710) specify Creative Commons Attribution-NonCommercial-ShareAlike. +The datasheet links [CC BY-NC-SA 2.0](https://creativecommons.org/licenses/by-nc-sa/2.0/legalcode.en). +This research mirror follows that noncommercial, attribution, and ShareAlike permission. + +On 2026-10-27, the [Caltech record API](https://data.caltech.edu/api/records/s0vdx-0k302) instead listed CC BY 4.0. +We record this difference rather than describe the source as unconditionally commercial or unlicensed. +This notice does not remove any permissions that the original licensors separately granted. + +Original material retains its source terms. +To the extent copyright applies, BrainPilotBench contributes its new dataset adaptations under [CC BY-NC-SA 4.0](https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode.en). +This contribution license does not replace the license of the underlying material. +The [Creative Commons guidance](https://creativecommons.org/faq/#if-i-derive-or-adapt-material-offered-under-a-creative-commons-license-which-cc-licenses-can-i-use) explains source and adapter obligations. + +## Changes and evaluation roles + +BrainPilotBench converts source JSON into numeric NPZ files and binds each file by size and SHA-256. +It derives Valid from official Train while grouping exact pose repeats within the local Train/Valid partition. +It preserves source annotator roles and official Test. Source recordings can recur across different annotator groups. +It separates public development inputs from evaluator inputs and labels. +The metric averages the three scored behavior classes within each annotator, then averages annotators equally. +The task is a BrainPilotBench adaptation, not an official CalMS21 leaderboard result. + +## Reuse and evaluation integrity + +Keep the attribution, source links, license links, modification notice, and applicable warranty disclaimers with redistributed material. +Use this mirror for noncommercial purposes under the applicable source terms. +The source licenses provide their own warranty disclaimers and limits of liability. +This mirror does not imply endorsement by an original author or institution. + +Evaluator-only access protects experimental integrity. It is not a new copyright restriction on licensed recipients. +The Test labels were publicly available upstream. Their source permissions remain intact. +Access controls do not impose a separate ban on redistribution or another exercise of those rights. diff --git a/tasks/animal-behavior/calms21-annotation-style-transfer/README.md b/tasks/animal-behavior/calms21-annotation-style-transfer/README.md new file mode 100644 index 0000000000000000000000000000000000000000..c3190e504789a62ba0a7dfd38b86a093cc67d496 --- /dev/null +++ b/tasks/animal-behavior/calms21-annotation-style-transfer/README.md @@ -0,0 +1,9 @@ +# CalMS21 annotation-style transfer + +Adapt frame-level social-behavior predictions to five annotator definitions. Score behavior F1 within each annotator, then average annotators. + +This public packet contains 31 files (98,540,258 bytes). +The [task guide](https://github.com/NeuroAIHub/BrainPilotBench/blob/8b59add4c9d02a324f61606ac8db1ccbe7fbe94e/tasks/animal-behavior/calms21-annotation-style-transfer/README.md) defines inputs, splits, metrics and environments. +Fixed-reference interface checks passed. No Agent benchmark results or exact source-leaderboard reproduction are claimed. + +Read [NOTICE.md](NOTICE.md) for source-specific noncommercial licenses, attribution and transformations. diff --git a/tasks/animal-behavior/calms21-annotation-style-transfer/manifest.json b/tasks/animal-behavior/calms21-annotation-style-transfer/manifest.json new file mode 100644 index 0000000000000000000000000000000000000000..85b6dcaab2cc3ddbeb3921782809f7ea7d65f6e3 --- /dev/null +++ b/tasks/animal-behavior/calms21-annotation-style-transfer/manifest.json @@ -0,0 +1,197 @@ +{ + "access_role": "public", + "content_revision": "4e41e730bb39966c2e21e07e5cfb5bb42e4d08dc11005cac06c2637d99dadb3f", + "data_category": "animal-behavior", + "files": [ + { + "bytes": 11921, + "native_path": "manifest.json", + "path": "tasks/animal-behavior/calms21-annotation-style-transfer/public/manifest.json", + "sha256": "45d38990775af55fc30de4e2e4599750cb4a2a15d994f55bd625da40e9e5104b" + }, + { + "bytes": 3186579, + 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The repository software license does not replace these data terms. + +## Source and attribution + +Source: [Caltech Mouse Social Interactions (CalMS21) Dataset, version 1.0](https://doi.org/10.22002/D1.1991). +The source record credits Jennifer J. Sun, Tomomi Karigo, David J. Anderson, Pietro Perona, Yisong Yue, and Ann Kennedy. + +Citation: Jennifer J. Sun and coauthors, *The Multi-Agent Behavior Dataset: Mouse Dyadic Social Interactions* (2021). +The [paper](https://arxiv.org/abs/2104.02710) supplies the complete author list and dataset description. + +This package derives from `task1_classic_classification.zip` at the [official record](https://data.caltech.edu/records/s0vdx-0k302). +Its SHA-256 is `f1cd2f46771cc3834020d187604da53e5ff330121f5a816146f14192fb0bf427`. +Its published MD5 is `8a02654fddae28614ee24a6a082261b8`, and its size is 457,357,950 bytes. +The [pinned source protocol](https://github.com/NeuroAIHub/BrainPilotBench/blob/8b59add4c9d02a324f61606ac8db1ccbe7fbe94e/tasks/animal-behavior/calms21-classic-classification/protocol.json) records these bindings. + +## License basis + +The [paper's hosting appendix and datasheet](https://arxiv.org/html/2104.02710) specify Creative Commons Attribution-NonCommercial-ShareAlike. +The datasheet links [CC BY-NC-SA 2.0](https://creativecommons.org/licenses/by-nc-sa/2.0/legalcode.en). +This research mirror follows that noncommercial, attribution, and ShareAlike permission. + +On 2026-10-27, the [Caltech record API](https://data.caltech.edu/api/records/s0vdx-0k302) instead listed CC BY 4.0. +We record this difference rather than describe the source as unconditionally commercial or unlicensed. +This notice does not remove any permissions that the original licensors separately granted. + +Original material retains its source terms. +To the extent copyright applies, BrainPilotBench contributes its new dataset adaptations under [CC BY-NC-SA 4.0](https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode.en). +This contribution license does not replace the license of the underlying material. +The [Creative Commons guidance](https://creativecommons.org/faq/#if-i-derive-or-adapt-material-offered-under-a-creative-commons-license-which-cc-licenses-can-i-use) explains source and adapter obligations. + +## Changes and evaluation roles + +BrainPilotBench converts source JSON into numeric NPZ files and binds each file by size and SHA-256. +It derives a deterministic, whole-sequence Valid partition from official Train and preserves official Test. +It separates public development inputs from evaluator inputs and labels. +The four source behavior classes remain intact. The main metric averages three behavior-class F1 values and excludes only the `other` class average. +The task is a BrainPilotBench adaptation, not an official CalMS21 leaderboard result. + +## Reuse and evaluation integrity + +Keep the attribution, source links, license links, modification notice, and applicable warranty disclaimers with redistributed material. +Use this mirror for noncommercial purposes under the applicable source terms. +The source licenses provide their own warranty disclaimers and limits of liability. +This mirror does not imply endorsement by an original author or institution. + +Evaluator-only access protects experimental integrity. It is not a new copyright restriction on licensed recipients. +The Test labels were publicly available upstream. Their source permissions remain intact. +Access controls do not impose a separate ban on redistribution or another exercise of those rights. diff --git a/tasks/animal-behavior/calms21-classic-classification/README.md b/tasks/animal-behavior/calms21-classic-classification/README.md new file mode 100644 index 0000000000000000000000000000000000000000..782ae7875bb1625aa430e643c7a19eeca8d29b55 --- /dev/null +++ b/tasks/animal-behavior/calms21-classic-classification/README.md @@ -0,0 +1,9 @@ +# CalMS21 social-behavior classification + +Predict attack, investigation, mount or other in every frame from two-mouse pose and confidence. Score mean F1 over the three named behaviors. + +This public packet contains 71 files (85,882,472 bytes). +The [task guide](https://github.com/NeuroAIHub/BrainPilotBench/blob/8b59add4c9d02a324f61606ac8db1ccbe7fbe94e/tasks/animal-behavior/calms21-classic-classification/README.md) defines inputs, splits, metrics and environments. +Fixed-reference interface checks passed. No Agent benchmark results or exact source-leaderboard reproduction are claimed. + +Read [NOTICE.md](NOTICE.md) for source-specific noncommercial licenses, attribution and transformations. diff --git a/tasks/animal-behavior/calms21-classic-classification/manifest.json b/tasks/animal-behavior/calms21-classic-classification/manifest.json new file mode 100644 index 0000000000000000000000000000000000000000..a93269e1233b3675dbec518abae6ab924f4b234b --- /dev/null +++ b/tasks/animal-behavior/calms21-classic-classification/manifest.json @@ -0,0 +1,437 @@ +{ + "access_role": "public", + "content_revision": "67ea0d3a5b0dfd8f374dc6a87512023533b2c65365982ddb2f95a43cf0fae835", + "data_category": "animal-behavior", + "files": [ + { + "bytes": 21550, + "native_path": "manifest.json", + "path": "tasks/animal-behavior/calms21-classic-classification/public/manifest.json", + "sha256": "7028e39cbdc0f4d090e1d7fc18bf482287d52ae93f02e30e08a3c150886a4ae6" + }, + { + "bytes": 1256937, + "native_path": 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The repository software license does not replace these data terms. + +## Source and attribution + +Source: [Caltech Mouse Social Interactions (CalMS21) Dataset, version 1.0](https://doi.org/10.22002/D1.1991). +The source record credits Jennifer J. Sun, Tomomi Karigo, David J. Anderson, Pietro Perona, Yisong Yue, and Ann Kennedy. + +Citation: Jennifer J. Sun and coauthors, *The Multi-Agent Behavior Dataset: Mouse Dyadic Social Interactions* (2021). +The [paper](https://arxiv.org/abs/2104.02710) supplies the complete author list and dataset description. + +This package derives from `task3_new_behaviors.zip` at the [official record](https://data.caltech.edu/records/s0vdx-0k302). +Its SHA-256 is `ed9edd3009b063a8edb4c31b38d4a6773b5d6a1ee80cd57b5df89417ca647821`. +Its published MD5 is `df59df02d069bab1cfc376cdc1a3925b`, and its size is 556,170,163 bytes. +The [pinned source protocol](https://github.com/NeuroAIHub/BrainPilotBench/blob/8b59add4c9d02a324f61606ac8db1ccbe7fbe94e/tasks/animal-behavior/calms21-few-shot-behavior/protocol.json) records these bindings. + +## License basis + +The [paper's hosting appendix and datasheet](https://arxiv.org/html/2104.02710) specify Creative Commons Attribution-NonCommercial-ShareAlike. +The datasheet links [CC BY-NC-SA 2.0](https://creativecommons.org/licenses/by-nc-sa/2.0/legalcode.en). +This research mirror follows that noncommercial, attribution, and ShareAlike permission. + +On 2026-10-27, the [Caltech record API](https://data.caltech.edu/api/records/s0vdx-0k302) instead listed CC BY 4.0. +We record this difference rather than describe the source as unconditionally commercial or unlicensed. +This notice does not remove any permissions that the original licensors separately granted. + +Original material retains its source terms. +To the extent copyright applies, BrainPilotBench contributes its new dataset adaptations under [CC BY-NC-SA 4.0](https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode.en). +This contribution license does not replace the license of the underlying material. +The [Creative Commons guidance](https://creativecommons.org/faq/#if-i-derive-or-adapt-material-offered-under-a-creative-commons-license-which-cc-licenses-can-i-use) explains source and adapter obligations. + +## Changes and evaluation roles + +BrainPilotBench converts source JSON into numeric NPZ files and binds each file by size and SHA-256. +It derives Valid from whole official-Train sequences and preserves the seven source behavior targets and official Test. +The single intromission training sequence stays in Train. It cannot also supply an independent Valid sequence. +The complete seven-target F1 uses the evaluator role, not an incomplete public Valid aggregate. +It separates public development inputs from evaluator inputs and labels. Recordings can recur across different behavior targets. +The task is a BrainPilotBench adaptation, not an official CalMS21 leaderboard result. + +## Reuse and evaluation integrity + +Keep the attribution, source links, license links, modification notice, and applicable warranty disclaimers with redistributed material. +Use this mirror for noncommercial purposes under the applicable source terms. +The source licenses provide their own warranty disclaimers and limits of liability. +This mirror does not imply endorsement by an original author or institution. + +Evaluator-only access protects experimental integrity. It is not a new copyright restriction on licensed recipients. +The Test labels were publicly available upstream. Their source permissions remain intact. +Access controls do not impose a separate ban on redistribution or another exercise of those rights. diff --git a/tasks/animal-behavior/calms21-few-shot-behavior/README.md b/tasks/animal-behavior/calms21-few-shot-behavior/README.md new file mode 100644 index 0000000000000000000000000000000000000000..f54d76141f96ce733e3e5138bd70ce210f8d8f9b --- /dev/null +++ b/tasks/animal-behavior/calms21-few-shot-behavior/README.md @@ -0,0 +1,9 @@ +# CalMS21 few-shot behavior classification + +Learn seven binary behavior targets from limited labeled sequences. Score positive F1 per behavior, then average all seven targets in owner evaluation. + +This public packet contains 18 files (37,710,889 bytes). +The [task guide](https://github.com/NeuroAIHub/BrainPilotBench/blob/8b59add4c9d02a324f61606ac8db1ccbe7fbe94e/tasks/animal-behavior/calms21-few-shot-behavior/README.md) defines inputs, splits, metrics and environments. +Fixed-reference interface checks passed. No Agent benchmark results or exact source-leaderboard reproduction are claimed. + +Read [NOTICE.md](NOTICE.md) for source-specific noncommercial licenses, attribution and transformations. diff --git a/tasks/animal-behavior/calms21-few-shot-behavior/manifest.json b/tasks/animal-behavior/calms21-few-shot-behavior/manifest.json new file mode 100644 index 0000000000000000000000000000000000000000..a76be69ac14c50e720c30f4a37b3de46dc4a771e --- /dev/null +++ b/tasks/animal-behavior/calms21-few-shot-behavior/manifest.json @@ -0,0 +1,119 @@ +{ + "access_role": "public", + "content_revision": "375719eaf2c321f8bee5c0b8a85b87ce1b4bb6d424877c8db740d86c6d981488", + "data_category": "animal-behavior", + "files": [ + { + "bytes": 7420, + "native_path": "manifest.json", + "path": "tasks/animal-behavior/calms21-few-shot-behavior/public/manifest.json", + "sha256": "85d09a80315ed5c847207d2efbe23f997f46420eeba3f1df3d09cf3d909fc226" + }, + { + "bytes": 614568, + "native_path": 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For the avoidance of doubt, this paragraph does not +form part of the public licenses. + +Creative Commons may be contacted at creativecommons.org. diff --git a/tasks/animal-behavior/mabe22-representation-classification/NOTICE.md b/tasks/animal-behavior/mabe22-representation-classification/NOTICE.md new file mode 100644 index 0000000000000000000000000000000000000000..c8f867cb8701f9481d3e14b80ac53b8b1c508312 --- /dev/null +++ b/tasks/animal-behavior/mabe22-representation-classification/NOTICE.md @@ -0,0 +1,68 @@ +# MABe22 representations: data notice + +Task: `mabe22-representation-classification`. +This notice covers the public and evaluator data packages. The repository software license does not replace these data terms. + +## Sources, attribution, and licenses + +### Original MABe22 data + +Source: [MABe22 dataset, CaltechDATA v1](https://doi.org/10.22002/rdsa8-rde65). +Credit: Jennifer J. Sun, Markus Marks, Ann Kennedy, and the MABe22 collaborators. +The official record and paper identify all dataset creators and authors. +Citation: Sun and coauthors, *MABe22: A Multi-Species Multi-Task Benchmark for Learned Representations of Behavior*, ICML, PMLR 202, 32936–32990 (2023). + +The [paper's Mouse datasheet](https://arxiv.org/html/2207.10553v2) specifies [CC BY-NC-SA 2.0](https://creativecommons.org/licenses/by-nc-sa/2.0/legalcode.en). +This covers the original mouse data, including keypoints, condition labels, and UserTrain. +The [Caltech API](https://data.caltech.edu/api/records/rdsa8-rde65) had no rights field on 2026-10-27. This mirror uses the explicit paper license. + +| Source file | Published MD5 | +|---|---| +| `mouse_user_train.npy` | `389bc12c9ad49b7cb50b531707b448a5` | +| `mouse_submission_keypoints.npy` | `68a9fe1fe71225787a4dae6369acc9dc` | +| `mouse_submission_labels.npy` | `7f10c2b676e7dd8b4348423f0ee0aa8a` | +| `mouse_frame_number_map.npy` | `ffc1dcae90176cdac4ff4fe123e18f25` | + +### Manual behavior labels and source splits + +Source: [damaggu/MABe2022](https://github.com/damaggu/MABe2022/tree/234dae7098314d6035066e3028caedee3f3ee379), commit `234dae7098314d6035066e3028caedee3f3ee379`. +Its README credits Jennifer J. Sun, Ann Kennedy, Kristin Branson, Markus Marks, and Dipam Chakraborty. +The pinned [LICENCE](https://github.com/damaggu/MABe2022/blob/234dae7098314d6035066e3028caedee3f3ee379/LICENCE) provides [CC BY-NC 4.0](https://creativecommons.org/licenses/by-nc/4.0/legalcode.en). +The inspected label directories contain no separate license exception. +This notice preserves that repository license and the original MABe22 data attribution and ShareAlike terms. +The delivery includes the unchanged repository license as `LICENSE-MABe-evaluator.txt`. + +| Source asset | SHA-256 | +|---|---| +| `round2/metadata/mouse_new_splits/labels.npy` | `cae4936eee6213f7b5247dd14c021221c9ddbe12df69de7a150d906111ee207f` | +| `round2/metadata/mouse_new_splits/frame_number_map.npy` | `7d4c6f891050ac5e6816a5d501c9bb6ea05b7d5f18bc5018a7981c61b4aee82a` | +| Each selected condition split JSON | `ef306e4f369f72b64a53df8f00b45747b50554678dd08b7300553c36feb22eaf` | +| Each selected manual-behavior split JSON | `049f99e3ffb5b939962654265fda18f01088b6905d1a2f8f237c38df1fe41aa3` | + +The [pinned source fetcher](https://github.com/NeuroAIHub/BrainPilotBench/blob/8b59add4c9d02a324f61606ac8db1ccbe7fbe94e/tasks/animal-behavior/_shared/mabe_fetch_sources.py) records exact source URLs, file sizes, and checksum algorithms. +SHA-256 values for GitHub assets bind the selected files. Caltech supplies the MD5 values above. + +## BrainPilotBench changes + +BrainPilotBench converts source object arrays into numeric NPZ files and retains source sequence memberships. +The public development package contains 784 keypoint-only UserTrain clips and protocol metadata, without source annotations. +The evaluator package contains submission poses, probe-training labels, and Test labels in separate roles. +The task retains strain, lights, and four manual behavior targets. It excludes experiment-day and time-of-day regression. +The evaluation profile fixes three 80% sequence samples with seeds 0, 1, and 2, balanced Ridge probes, and sequence-first F1. +These choices define an explicit BrainPilotBench adaptation, not exact official leaderboard reproduction. + +Original material retains its source terms. +To the extent copyright applies, BrainPilotBench contributes its new dataset adaptations under [CC BY-NC-SA 4.0](https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode.en). +This contribution license does not replace the license of the underlying material. +The [Creative Commons guidance](https://creativecommons.org/faq/#if-i-derive-or-adapt-material-offered-under-a-creative-commons-license-which-cc-licenses-can-i-use) explains source and adapter obligations. + +## Reuse and evaluation integrity + +Keep the attribution, source links, license links, modification notice, and applicable warranty disclaimers with redistributed material. +Use this mirror for noncommercial purposes under the applicable source terms. +The source licenses provide their own warranty disclaimers and limits of liability. +This mirror does not imply endorsement by an original author or institution. + +Evaluator-only access protects experimental integrity. It is not a new copyright restriction on licensed recipients. +The source labels were publicly available upstream. Their source permissions remain intact. +Access controls do not impose a separate ban on redistribution or another exercise of those rights. diff --git a/tasks/animal-behavior/mabe22-representation-classification/README.md b/tasks/animal-behavior/mabe22-representation-classification/README.md new file mode 100644 index 0000000000000000000000000000000000000000..498eb17e34964d53c38cba9be94c19316191b28e --- /dev/null +++ b/tasks/animal-behavior/mabe22-representation-classification/README.md @@ -0,0 +1,9 @@ +# MABe22 learned pose representations + +Learn frame embeddings from unlabeled three-mouse pose. The evaluator fits fixed Ridge probes for two experimental conditions and four manually annotated behaviors. + +This public packet contains 786 files (61,796,624 bytes). +The [task guide](https://github.com/NeuroAIHub/BrainPilotBench/blob/8b59add4c9d02a324f61606ac8db1ccbe7fbe94e/tasks/animal-behavior/mabe22-representation-classification/README.md) defines inputs, splits, metrics and environments. +Fixed-reference interface checks passed. 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b/tasks/animal-behavior/mabe22-supervised-segmentation/LICENSE-ResiFuse.txt @@ -0,0 +1,21 @@ +MIT License + +Copyright (c) 2026 Weihan Li, Jingyang Ke, Qinheng Pu, Yule Wang, Chengrui Li, Anqi Wu + +Permission is hereby granted, free of charge, to any person obtaining a copy +of this software and associated documentation files (the "Software"), to deal +in the Software without restriction, including without limitation the rights +to use, copy, modify, merge, publish, distribute, sublicense, and/or sell +copies of the Software, and to permit persons to whom the Software is +furnished to do so, subject to the following conditions: + +The above copyright notice and this permission notice shall be included in all +copies or substantial portions of the Software. + +THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR +IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, +FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE +AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER +LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, +OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE +SOFTWARE. diff --git a/tasks/animal-behavior/mabe22-supervised-segmentation/NOTICE.md b/tasks/animal-behavior/mabe22-supervised-segmentation/NOTICE.md new file mode 100644 index 0000000000000000000000000000000000000000..5c3018c806bababca7f36824ab34b20959dca4fc --- /dev/null +++ b/tasks/animal-behavior/mabe22-supervised-segmentation/NOTICE.md @@ -0,0 +1,71 @@ +# MABe22 supervised segmentation: data notice + +Task: `mabe22-supervised-segmentation`. +This notice covers the public and evaluator data packages. The repository software license does not replace these data terms. + +## Sources, attribution, and licenses + +### Original MABe22 labels + +Source: [MABe22 dataset, CaltechDATA v1](https://doi.org/10.22002/rdsa8-rde65). +Credit: Jennifer J. Sun, Markus Marks, Ann Kennedy, and the MABe22 collaborators. +The official record and paper identify all dataset creators and authors. +Citation: Sun and coauthors, *MABe22: A Multi-Species Multi-Task Benchmark for Learned Representations of Behavior*, ICML, PMLR 202, 32936–32990 (2023). + +The [paper's Mouse datasheet](https://arxiv.org/html/2207.10553v2) specifies [CC BY-NC-SA 2.0](https://creativecommons.org/licenses/by-nc-sa/2.0/legalcode.en). +The [Caltech API](https://data.caltech.edu/api/records/rdsa8-rde65) had no rights field on 2026-10-27. This mirror uses the explicit paper license. +The source `mouse_submission_labels.npy` has published MD5 `7f10c2b676e7dd8b4348423f0ee0aa8a`. +The source `mouse_frame_number_map.npy` has published MD5 `ffc1dcae90176cdac4ff4fe123e18f25`. + +### Re-estimated pose + +Source and credit: [WeihanLikk/ResiFuse-MABe22](https://huggingface.co/datasets/WeihanLikk/ResiFuse-MABe22/tree/22019237bee137b74f8211977779c822236b8402), revision `22019237bee137b74f8211977779c822236b8402`. +The [pinned dataset card](https://huggingface.co/datasets/WeihanLikk/ResiFuse-MABe22/blob/22019237bee137b74f8211977779c822236b8402/README.md) grants [CC BY-NC-SA 4.0](https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode.en). +It identifies this pose as a derivative of the MABe22 videos. The original MABe22 attribution also remains applicable. + +The ResiFuse repository credits Weihan Li, Jingyang Ke, Qinheng Pu, Yule Wang, Chengrui Li, and Anqi Wu. +Their work is *Learning When Visual Context Matters for Mouse Behavior Analysis*. +The [pinned README](https://github.com/BRAINML-GT/ResiFuse/blob/ae4acf51962b1611656da00d3da92a6b02a56ef4/README.md) supplies the method description and credits. + +All 108 selected H5 files bind to their source LFS SHA-256 values. +The generated `pose_source_manifest.json` records those paths and hashes. +Its SHA-256 is `def7a7b7f2b405bc42a58c696c7be2ebfc4bf9eb6cddf121258d7d9cfe69eb78`. +The [pinned source protocol](https://github.com/NeuroAIHub/BrainPilotBench/blob/8b59add4c9d02a324f61606ac8db1ccbe7fbe94e/tasks/animal-behavior/mabe22-supervised-segmentation/protocol.json) records the preparation bindings. + +### Supervised split metadata + +The split comes from [BRAINML-GT/ResiFuse](https://github.com/BRAINML-GT/ResiFuse/tree/ae4acf51962b1611656da00d3da92a6b02a56ef4), commit `ae4acf51962b1611656da00d3da92a6b02a56ef4`. +The source file is `splits/mabe_finetune_split.json`. +Its SHA-256 is `ebb486c7351eff8c9ae0fcfd2a21423083d06d0795e2febd2677d000ad4bffc9`. +The repository's software and documentation use the [MIT License](https://github.com/BRAINML-GT/ResiFuse/blob/ae4acf51962b1611656da00d3da92a6b02a56ef4/LICENSE). + +Copyright (c) 2026 Weihan Li, Jingyang Ke, Qinheng Pu, Yule Wang, Chengrui Li, Anqi Wu. + +The delivery includes the full upstream MIT notice as `LICENSE-ResiFuse.txt`. +Its permission notice and warranty disclaimer apply to redistributed source split or software material. +The MIT license does not relicense the pose or behavior labels. + +## BrainPilotBench changes + +BrainPilotBench converts H5 pose and source object labels into numeric NPZ files. +It retains indexed frames 0–1799 and excludes the unlabeled terminal pose row. +It retains the source 54/11/43 video split and separates public development data from evaluator data. +It groups oral-ear and oral-oral contact into oral contact, alongside chases, huddles, and oral-genital contact. +Inference uses label-independent complete clips. The evaluator owns the source-positive and pose-valid eligibility mask. +The resulting pose-only task is a BrainPilotBench adaptation, not an exact ResiFuse or original MABe22 paper reproduction. + +Original material retains its source terms. +To the extent copyright applies, BrainPilotBench contributes its new dataset adaptations under [CC BY-NC-SA 4.0](https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode.en). +This contribution license does not replace the license of the underlying material. +The [Creative Commons guidance](https://creativecommons.org/faq/#if-i-derive-or-adapt-material-offered-under-a-creative-commons-license-which-cc-licenses-can-i-use) explains source and adapter obligations. + +## Reuse and evaluation integrity + +Keep the attribution, source links, license links, modification notice, and applicable warranty disclaimers with redistributed material. +Use this mirror for noncommercial purposes under the applicable source terms. +The source licenses provide their own warranty disclaimers and limits of liability. +This mirror does not imply endorsement by an original author or institution. + +Evaluator-only access protects experimental integrity. It is not a new copyright restriction on licensed recipients. +The source labels were publicly available upstream. Their source permissions remain intact. +Access controls do not impose a separate ban on redistribution or another exercise of those rights. diff --git a/tasks/animal-behavior/mabe22-supervised-segmentation/README.md b/tasks/animal-behavior/mabe22-supervised-segmentation/README.md new file mode 100644 index 0000000000000000000000000000000000000000..323c6d57e2ec9c86c17d8c4983a21a6ab154ba02 --- /dev/null +++ b/tasks/animal-behavior/mabe22-supervised-segmentation/README.md @@ -0,0 +1,9 @@ +# MABe22 supervised pose segmentation + +Predict four grouped social behaviors from re-estimated three-mouse pose. Score macro-F1 on source-positive, pose-valid frames, with Test eligibility kept evaluator-only. + +This public packet contains 68 files (27,713,948 bytes). +The [task guide](https://github.com/NeuroAIHub/BrainPilotBench/blob/8b59add4c9d02a324f61606ac8db1ccbe7fbe94e/tasks/animal-behavior/mabe22-supervised-segmentation/README.md) defines inputs, splits, metrics and environments. +Fixed-reference interface checks passed. No Agent benchmark results or exact source-leaderboard reproduction are claimed. + +Read [NOTICE.md](NOTICE.md) for source-specific noncommercial licenses, attribution and transformations. diff --git a/tasks/animal-behavior/mabe22-supervised-segmentation/manifest.json b/tasks/animal-behavior/mabe22-supervised-segmentation/manifest.json new file mode 100644 index 0000000000000000000000000000000000000000..590f206954978ae05fa8c9b2064f91a2ae234aab --- /dev/null +++ b/tasks/animal-behavior/mabe22-supervised-segmentation/manifest.json @@ -0,0 +1,419 @@ +{ + "access_role": "public", + "content_revision": "545b653c45025b388f2ec0b7f79da68895aa049a188f5970a9462355a6db7716", + "data_category": "animal-behavior", + "files": [ + { + "bytes": 12431, + "native_path": "manifest.json", + "path": "tasks/animal-behavior/mabe22-supervised-segmentation/public/manifest.json", + "sha256": "164196260ac14da6c0f8647dc3a959020db91d3bee3b9996d6d4e35caa73afa5" + }, + { + "bytes": 475274, + "native_path": 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