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scripts/parse_mcisaac_data.R

@@ -86,8 +86,20 @@ mcisaac_GeneName_to_target_locus_tag = mcisaac_for_parquet %>%
   select(GeneName, target_locus_tag) %>%
   distinct()
 
-# mcisaac_for_parquet %>%
-#   select(regulator_locus_tag, time, mechanism, restriction, date, strain,
-#          target_locus_tag, ends_with("median"), starts_with("log2")) %>%
-#   group_by(regulator_locus_tag, time, mechanism, restriction, date, strain) %>%
-#   write_dataset(path = here("data/mcisaac/hf/data"), format = "parquet")
+mcisaac_for_parquet %>%
+    select(regulator_locus_tag, regulator_symbol, target_locus_tag, target_symbol,
+           time, mechanism, restriction, date, strain,
+           ends_with("median"), starts_with("log2")) %>%
+write_parquet("~/code/hf/hackett_2020/hackett_2020.parquet",
+              compression = "zstd",
+              write_statistics = TRUE,
+              use_dictionary = c(
+                regulator_locus_tag = TRUE,
+                regulator_symbol = TRUE,
+                target_locus_tag = TRUE,
+                target_symbol = TRUE,
+                time = TRUE,
+                mechanism = TRUE,
+                restriction = TRUE,
+                date = TRUE,
+                strain = TRUE))