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README.md

@@ -14,28 +14,30 @@ pretty_name: "Kemmeren, 2014 Overexpression"
 size_categories:
 - 1M<n<10M
 
-environmental_conditions:
-  growth_conditions:
-    temperature_celsius: 30
-    growth_phase_at_harvest:
-      phase: "early_mid_log"
-      od600: 0.6
-      od600_tolerance: 0.1
-    media:
-      name: "synthetic_complete"
-      carbon_source:
-        compound: "D-glucose"
-        concentration_percent: 2.0
-      components:
-        - name: "amino_acid_dropout_mix"
-          concentration_g_per_l: 2.0
-        - name: "yeast_nitrogen_base"
-          concentration_g_per_l: 6.71
-          specifications:
-            - "without_amino_acids"
-            - "without_carbohydrate"
-            - "with_ammonium_sulfate"
+experimental_conditions:
+  temperature_celsius: 30
   cultivation_method: plate
+  growth_phase_at_harvest:
+    phase: "early_mid_log"
+    od600: 0.6
+    od600_tolerance: 0.1
+  media:
+    name: synthetic_complete
+    carbon_source:
+      - compound: D-glucose
+        # Kemmeren et al 2014: 2% D-glucose
+        concentration_percent: 2
+    nitrogen_source:
+      - compound: yeast_nitrogen_base
+        # Kemmeren et al 2014: 6.71 g/l
+        concentration_percent: 0.671
+        specifications:
+          - without_amino_acids
+          - without_carbohydrate
+          - with_ammonium_sulfate
+      - compound: amino_acid_dropout_mix
+        # Kemmeren et al 2014: 2.0 g/l
+        concentration_percent: 0.2
 configs:
 - config_name: kemmeren_2014
   description: >-