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README.md

@@ -99,59 +99,6 @@ configs:
       dtype: string
       description: Standard gene symbol from yeast_genome_resources dataset
 
-- config_name: mahendrawada_2025_metadata
-  description: Metadata for ChEC-seq experiments describing transcription factors and experimental conditions
-  dataset_type: metadata
-  applies_to: ["chec_seq_genome_map"]
-  data_files:
-  - split: train
-    path: chec_seq_metadata_mahendrawada_2025.parquet
-  dataset_info:
-    features:
-    - name: accession
-      dtype: string
-      description: Unique identifier for each ChEC-seq experiment
-    - name: regulator_locus_tag
-      dtype: string
-      description: Systematic gene name (ORF identifier) of the transcription factor
-    - name: regulator_symbol
-      dtype: string
-      description: Standard gene symbol of the transcription factor
-    - name: strain_background
-      dtype: string
-      description: Yeast strain background used in the experiment
-    - name: experimental_condition
-      dtype: string
-      description: Experimental conditions (e.g., growth media, temperature)
-    - name: publication_doi
-      dtype: string
-      description: DOI of the publication describing this dataset
-    - name: data_processing_method
-      dtype: string
-      description: Method used for data processing and peak calling
-
-- config_name: chec_seq_genome_map
-  description: Raw ChEC-seq signal data partitioned by experiment accession showing genome-wide binding profiles
-  dataset_type: genome_map
-  data_files:
-  - split: train
-    path: chec_seq_genome_map/*/*.parquet
-  dataset_info:
-    features:
-    - name: chr
-      dtype: string
-      description: Chromosome name (e.g., chrI, chrII, etc.)
-    - name: pos
-      dtype: int32
-      description: Genomic position
-    - name: signal
-      dtype: float32
-      description: ChEC signal intensity at this genomic position, normalized to Drosophila spike-in control
-    partitioning:
-      enabled: true
-      partition_by: ["accession"]
-      path_template: "chec_seq_genome_map/accession={accession}/*.parquet"
-
 - config_name: mahendrawada_chec_seq
   description: ChEC-seq transcription factor binding data with peak scores (original authors' processed data)
   default: true
@@ -164,6 +111,11 @@ configs:
     path: chec_mahendrawada_2025.parquet
   dataset_info:
     features:
+    - name: sample_id
+      dtype: integer
+      description: >-
+        unique identifier for a specific sample, which uniquely identifies one of the 178 TFs.
+        Across datasets in this repo, the a given sample_id identifies the same regulator.
     - name: regulator_locus_tag
       dtype: string
       description: Systematic gene name (ORF identifier) of the transcription factor
@@ -191,6 +143,11 @@ configs:
     path: chec_reprocessed_mahendrawada_2025.parquet
   dataset_info:
     features:
+    - name: sample_id
+      dtype: integer
+      description: >-
+        unique identifier for a specific sample, which uniquely identifies one of the 178 TFs.
+        Across datasets in this repo, the a given sample_id identifies the same regulator.
     - name: regulator_locus_tag
       dtype: string
       description: Systematic gene name (ORF identifier) of the transcription factor
@@ -267,6 +224,11 @@ configs:
     path: rnaseq_mahendrawada_2025.parquet
   dataset_info:
     features:
+    - name: sample_id
+      dtype: integer
+      description: >-
+        unique identifier for a specific sample, which uniquely identifies one of the 178 TFs.
+        Across datasets in this repo, the a given sample_id identifies the same regulator.
     - name: regulator_locus_tag
       dtype: string
       description: Systematic gene name (ORF identifier) of the depleted transcription factor